Citrus Sinensis ID: 015304

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MGGQRVTTVVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNRT
ccccEEEEEccccHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHccccEEEccHHHHHHHHHcccccccEEEccccccHHHHHHHHHccccEEEcccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccHHccccEEEEEEEEEEEEcccEEEEEEEEcccccccHHHcccccccEEEcccccccccccccccccEEEEEccccccccEEEccccccccccccEEEEcccccccccccccccccccccEEEEEEEcccc
cccccEEEEEcccccEEEccccHHHHcccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHccccccEccHHHHHHHHHccccHHHEEEccccccHHHHHHHHHccccEEEEccHHHHHHHHHHcccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHHHHHHHccHHHccccccEEEEccccHHHHcHHHHEEEEEEEEcccccEEEEEEcccccccccccHcccccccEEEcccHHHcccccccccEEEEEEccccccccHEEEcccccccccccEEEEEcccccEEEEcccccccccccEEEEEEccccc
MGGQRVTTVVTKEELTEFVRSTIlkrqefdevpfyILDLGVVVTLYNQMIsklpmihphyavkcnpePALLEALAALGsnfdcasrSEIEAVLAlgvspdriiyanpckpvshikYAANvgvnlttfdSVEELHKIRkwhpkcdllirikppddsgakhpldskygvdhhpqeIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLgnnkmrvldigggfsftnsntKSFQEAASIIKEALHayfpnellpgsslrvisepgrfftySAFTLYTQIIGKRVHGEMRNYwindgkygsfdwvnydEAIAkctpltlasslttskglsrtynskvfgptcdaadevfsghklpelevtdWLVFSEMGaytrargtnfngyntaaiptYVVRSNRT
mggqrvttvvtkeeltefvrstilkrqefdevpfYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTlasslttskglsrtynSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTrargtnfngyntaaiptyvvrsnrt
MGGQRvttvvtkeeltefvRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNpepallealaalGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFaayrgaiaaakaVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCtpltlasslttskglsRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNRT
*******TVVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIK****************VDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVV*****
****R***VVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLAS********SRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSN**
********VVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNRT
***QRVTTVVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVR****
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MGGQRVTTVVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNRT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query409 2.2.26 [Sep-21-2011]
P50134431 Ornithine decarboxylase O N/A no 0.951 0.902 0.555 1e-124
O22616431 Ornithine decarboxylase O N/A no 0.958 0.909 0.553 1e-121
Q8S3N2435 Ornithine decarboxylase O N/A no 0.951 0.894 0.535 1e-119
P07805423 Ornithine decarboxylase O N/A no 0.887 0.858 0.404 2e-78
P27117461 Ornithine decarboxylase O yes no 0.889 0.789 0.421 6e-78
P11926461 Ornithine decarboxylase O yes no 0.870 0.772 0.421 2e-77
P27118450 Ornithine decarboxylase ( yes no 0.870 0.791 0.427 8e-77
P09057461 Ornithine decarboxylase O yes no 0.887 0.787 0.411 1e-76
Q9I8S4456 Ornithine decarboxylase 2 N/A no 0.877 0.787 0.420 4e-76
P27119461 Ornithine decarboxylase O N/A no 0.870 0.772 0.411 5e-76
>sp|P50134|DCOR_DATST Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1 Back     alignment and function desciption
 Score =  446 bits (1148), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/400 (55%), Positives = 288/400 (72%), Gaps = 11/400 (2%)

Query: 5   RVTTVVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKC 64
           R    ++++ L +F+ S I ++ + ++ PFY+LDLG VV+L +Q  + LP I P YAVKC
Sbjct: 36  RKVVPLSRDALQDFMVSIITQKLQDEKQPFYVLDLGEVVSLMDQWNAGLPNIRPFYAVKC 95

Query: 65  NPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL 124
           NPEP+ L  L+A+GSNFDCASR+EIE VL+LG+SPDRI++ANPCKP S I +AA VGVNL
Sbjct: 96  NPEPSFLSMLSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCKPESDIIFAAKVGVNL 155

Query: 125 TTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEAS 184
           TTFDS +E++KIRK HPKC+LL+RIKP DD  A+ P+  KYG    P+E+ PLL  A+A+
Sbjct: 156 TTFDSEDEVYKIRKHHPKCELLLRIKPMDDGNARCPMGPKYGA--LPEEVEPLLRTAQAA 213

Query: 185 GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTK 244
            L+V GV+FHIGS      AY GAIAAAK VFETAAR G +KM VLDIGGGF    ++  
Sbjct: 214 RLTVSGVSFHIGSGDADSKAYLGAIAAAKGVFETAARFGMSKMTVLDIGGGF----TSGH 269

Query: 245 SFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNY 304
            F  A++ ++ AL  +F +E      L +I+EPGRFF  +AFTL T IIGKRV GE+R Y
Sbjct: 270 QFTTASAAVRSALEQHFHDE----QELTIIAEPGRFFAETAFTLATTIIGKRVRGELREY 325

Query: 305 WINDGKYGSFDWVNYDEAIAKCTPLTLASSLTT-SKGLSRTYNSKVFGPTCDAADEVFSG 363
           WINDG YGS + V YD A    TPL   S+ +  + G S+T+ S VFGPTCDA D V   
Sbjct: 326 WINDGLYGSMNCVLYDHATVNATPLACMSNRSNLNCGGSKTFPSTVFGPTCDALDTVLRD 385

Query: 364 HKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYV 403
           ++LPEL+V DWL+F  MGAYT+A G+NFNG+NT+AI T++
Sbjct: 386 YQLPELQVNDWLIFPNMGAYTKAAGSNFNGFNTSAIVTHL 425

Datura stramonium (taxid: 4076)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7
>sp|O22616|DCOR_SOLLC Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2 Back     alignment and function description
>sp|Q8S3N2|DCOR_CAPAN Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1 Back     alignment and function description
>sp|P07805|DCOR_TRYBB Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2 Back     alignment and function description
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1 Back     alignment and function description
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2 Back     alignment and function description
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1 Back     alignment and function description
>sp|P09057|DCOR_RAT Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1 Back     alignment and function description
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc1-b PE=2 SV=1 Back     alignment and function description
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
224085964416 predicted protein [Populus trichocarpa] 0.958 0.942 0.641 1e-142
124298701411 putative ornithine decarboxylase [Theobr 0.955 0.951 0.624 1e-138
349617697413 ornithine decarboxylase [Erythroxylum co 0.958 0.949 0.611 1e-137
359491943411 PREDICTED: LOW QUALITY PROTEIN: ornithin 0.958 0.953 0.590 1e-128
224061945381 predicted protein [Populus trichocarpa] 0.921 0.989 0.618 1e-126
334351366455 lysine/ornithine decarboxylase [Echinoso 0.963 0.865 0.564 1e-125
334351364457 lysine/ornithine decarboxylase [Sophora 0.963 0.862 0.562 1e-125
1706323431 RecName: Full=Ornithine decarboxylase; S 0.951 0.902 0.555 1e-123
159031805433 ornithine decarboxylase [Nicotiana benth 0.963 0.909 0.555 1e-122
7230377433 ornithine decarboxylase [Nicotiana tabac 0.963 0.909 0.553 1e-122
>gi|224085964|ref|XP_002307756.1| predicted protein [Populus trichocarpa] gi|222857205|gb|EEE94752.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/407 (64%), Positives = 310/407 (76%), Gaps = 15/407 (3%)

Query: 3   GQRVTTVVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAV 62
           G+RVTT+ +K  LTEF+ S I K+QE  E PFY+LDLG V  L ++ +  LPM+HP YAV
Sbjct: 21  GKRVTTI-SKNGLTEFMLSIISKKQETKE-PFYVLDLGEVTALMDKWLMTLPMVHPFYAV 78

Query: 63  KCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGV 122
           KCNP+PALL +LAALGSNFDCASR+EIE+VL+LGVSP+RI+YANPCK  SHIKYAA+VGV
Sbjct: 79  KCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNRIVYANPCKQESHIKYAASVGV 138

Query: 123 NLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAE 182
           NLTTFDS EEL KIRKWH KC LLIRIK PDDSGA+ PL  KYG    P E+ PLL+AA+
Sbjct: 139 NLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPLGPKYGA--LPDEVTPLLQAAQ 196

Query: 183 ASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN 242
            + L+VVGV+FHIGS AT+  AY GAIA+AK+VFE A RLG   M++L+IGGGF+  +  
Sbjct: 197 TAQLNVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVRLGMPGMKILNIGGGFTAGS-- 254

Query: 243 TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMR 302
              F EAA+ IK AL AYFPNE  PG  L VISEPGRFF  SAFTL T IIGKRV G++R
Sbjct: 255 --QFDEAATTIKSALQAYFPNE--PG--LTVISEPGRFFAESAFTLATNIIGKRVRGDLR 308

Query: 303 NYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLT--TSKGLSRTYNSKVFGPTCDAADEV 360
            YWINDG YGS + + YD A   CTPL   S+    T KGL R Y+S VFGPTCDA D V
Sbjct: 309 EYWINDGIYGSMNCILYDHATITCTPLACNSNHANLTCKGL-RAYSSTVFGPTCDALDTV 367

Query: 361 FSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSN 407
            +GH+LPEL++ DWLVF  MGAYT A G++FNG+NTAAI T++  SN
Sbjct: 368 LTGHQLPELQINDWLVFPNMGAYTAAAGSSFNGFNTAAILTHLASSN 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|124298701|gb|ABN04356.1| putative ornithine decarboxylase [Theobroma cacao] Back     alignment and taxonomy information
>gi|349617697|gb|AEQ02350.1| ornithine decarboxylase [Erythroxylum coca] Back     alignment and taxonomy information
>gi|359491943|ref|XP_003634343.1| PREDICTED: LOW QUALITY PROTEIN: ornithine decarboxylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061945|ref|XP_002300677.1| predicted protein [Populus trichocarpa] gi|222842403|gb|EEE79950.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|334351366|dbj|BAK32801.1| lysine/ornithine decarboxylase [Echinosophora koreensis] Back     alignment and taxonomy information
>gi|334351364|dbj|BAK32800.1| lysine/ornithine decarboxylase [Sophora flavescens] Back     alignment and taxonomy information
>gi|1706323|sp|P50134.1|DCOR_DATST RecName: Full=Ornithine decarboxylase; Short=ODC gi|871008|emb|CAA61121.1| ornithine decarboxylase [Datura stramonium] Back     alignment and taxonomy information
>gi|159031805|dbj|BAF91874.1| ornithine decarboxylase [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|7230377|gb|AAF42973.1|AF127242_1 ornithine decarboxylase [Nicotiana tabacum] gi|13171237|gb|AAK13622.1|AF233849_1 ornithine decarboxylase [Nicotiana tabacum] gi|1754522|dbj|BAA14049.1| ornithine decarboxylase [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
UNIPROTKB|P27117461 ODC1 "Ornithine decarboxylase" 0.889 0.789 0.401 6.5e-67
UNIPROTKB|I3LTY3449 ODC1 "Uncharacterized protein" 0.889 0.810 0.401 2.2e-66
UNIPROTKB|P11926461 ODC1 "Ornithine decarboxylase" 0.882 0.783 0.398 3.6e-66
UNIPROTKB|E2R8D9461 ODC1 "Uncharacterized protein" 0.889 0.789 0.398 5.8e-66
RGD|3227461 Odc1 "ornithine decarboxylase 0.882 0.783 0.398 1.2e-65
MGI|MGI:97402461 Odc1 "ornithine decarboxylase, 0.882 0.783 0.391 4.1e-65
UNIPROTKB|P27118450 ODC1 "Ornithine decarboxylase" 0.880 0.8 0.398 5.2e-65
UNIPROTKB|F1NKA3450 ODC1 "Ornithine decarboxylase" 0.880 0.8 0.395 8.5e-65
UNIPROTKB|F1NT03460 ODC1 "Ornithine decarboxylase" 0.880 0.782 0.395 8.5e-65
ZFIN|ZDB-GENE-010816-1461 odc1 "ornithine decarboxylase 0.887 0.787 0.397 1.1e-64
UNIPROTKB|P27117 ODC1 "Ornithine decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 158/394 (40%), Positives = 214/394 (54%)

Query:    30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEI 89
             D+  FY+ DLG ++  + + +  LP + P YAVKCN            G+ FDCAS++EI
Sbjct:    36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEI 95

Query:    90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRI 149
             + V +LGV P+RIIYANPCK VS IKYAAN GV + TFDS  EL K+ + HPK  L++RI
Sbjct:    96 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 155

Query:   150 KPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXX 209
                DDS A   L  K+G       +  LLE A+   + V+GV+FH+GS  T         
Sbjct:   156 AT-DDSKAVCRLSVKFGATLKTSRL--LLERAKELDIDVIGVSFHVGSGCTDPETFVQAI 212

Query:   210 XXXXXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
                  VF+  A +G N M +LDIGGGF  +      F+E  S+I  AL  YFP++    S
Sbjct:   213 SDARCVFDMGAEVGFN-MYLLDIGGGFPGSEDVKLKFEEITSVINPALDKYFPSD----S 267

Query:   270 SLRVISEPGRFFTYSAFTLYTQIIGKRV----------HGEMRN----YWINDGKYGSFD 315
              +R+I+EPGR++  SAFTL   II K++            E  +    Y++NDG YGSF+
Sbjct:   268 GVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDEEESTDRTFMYYVNDGVYGSFN 327

Query:   316 WVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
              + YD A  K                 + Y+S ++GPTCD  D +     LPE+ V DW+
Sbjct:   328 CILYDHAHVK------PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWM 381

Query:   376 VFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNRT 409
             +F  MGAYT A  + FNG+    I  Y V S  T
Sbjct:   382 LFENMGAYTVAAASTFNGFQRPTI--YYVMSGPT 413
GO:0033387 "putrescine biosynthetic process from ornithine" evidence=IEA
GO:0004586 "ornithine decarboxylase activity" evidence=IEA
UNIPROTKB|I3LTY3 ODC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P11926 ODC1 "Ornithine decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8D9 ODC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|3227 Odc1 "ornithine decarboxylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:97402 Odc1 "ornithine decarboxylase, structural 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P27118 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKA3 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NT03 ODC1 "Ornithine decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010816-1 odc1 "ornithine decarboxylase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22616DCOR_SOLLC4, ., 1, ., 1, ., 1, 70.55330.95840.9095N/Ano
P41931DCOR_CAEEL4, ., 1, ., 1, ., 1, 70.37440.93640.9075yesno
P40807DCOR1_DROME4, ., 1, ., 1, ., 1, 70.38350.84840.8807yesno
Q8S3N2DCOR_CAPAN4, ., 1, ., 1, ., 1, 70.5350.95110.8942N/Ano
Q9UQW9DCOR_SCHPO4, ., 1, ., 1, ., 1, 70.40350.89240.8449yesno
P50134DCOR_DATST4, ., 1, ., 1, ., 1, 70.5550.95110.9025N/Ano
O50657DCLO_SELRU4, ., 1, ., 1, ., 1, 80.35300.85570.8905yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.10.963
4th Layer4.1.1.170.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 1e-159
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 6e-83
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 1e-78
pfam02784245 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent deca 4e-77
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 1e-68
cd06828373 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-pho 2e-42
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 2e-38
TIGR01048414 TIGR01048, lysA, diaminopimelate decarboxylase 3e-37
cd06841379 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5 6e-32
cd06839382 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5 2e-28
PRK08961861 PRK08961, PRK08961, bifunctional aspartate kinase/ 2e-23
cd06840368 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyrido 3e-23
TIGR03099398 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decar 5e-23
cd06836379 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri 3e-22
cd06842423 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5 6e-22
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 1e-19
PLN02537410 PLN02537, PLN02537, diaminopimelate decarboxylase 1e-16
cd06830409 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosp 9e-16
cd06843377 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5 1e-15
COG1166 652 COG1166, SpeA, Arginine decarboxylase (spermidine 2e-07
TIGR01273 624 TIGR01273, speA, arginine decarboxylase, biosynthe 4e-07
PRK11165420 PRK11165, PRK11165, diaminopimelate decarboxylase; 1e-05
PLN02439 559 PLN02439, PLN02439, arginine decarboxylase 4e-05
cd06829346 cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-ph 0.004
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information 
 Score =  452 bits (1165), Expect = e-159
 Identities = 181/377 (48%), Positives = 232/377 (61%), Gaps = 20/377 (5%)

Query: 31  EVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIE 90
           E PF ++DLG VV  Y +    LP + P YAVKCNP+PA+L  LAALG+ FDCAS+ EIE
Sbjct: 1   ETPFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIE 60

Query: 91  AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIK 150
            VL LGVSP+RII+ANPCK +S I+YAA +GV L TFDS +EL KI K  P   LL+RI 
Sbjct: 61  LVLGLGVSPERIIFANPCKSISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIA 120

Query: 151 PPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIA 210
             DDSGA  PL  K+G    P+E   LL  A+  GL+VVGV+FH+GS  T  +AY  AIA
Sbjct: 121 -TDDSGALCPLSRKFGA--DPEEARELLRRAKELGLNVVGVSFHVGSQCTDPSAYVDAIA 177

Query: 211 AAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTK-SFQEAASIIKEALHAYFPNELLPGS 269
            A+ VF+ AA LG  K+++LDIGGGF  +      SF+E A++I  AL  YFP+E     
Sbjct: 178 DAREVFDEAAELG-FKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPDE----- 231

Query: 270 SLRVISEPGRFFTYSAFTLYTQIIGKRVHGE---MRNYWINDGKYGSFDWVNYDEAIAKC 326
            +R+I+EPGR+   SAFTL   +I KR  G+    R Y++NDG YGSF+ + +D      
Sbjct: 232 GVRIIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPP 291

Query: 327 TPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPE-LEVTDWLVFSEMGAYTR 385
                   L         Y S ++GPTCD+ D ++    LPE L V DWL+F  MGAYT 
Sbjct: 292 RV------LKDGGRDGELYPSSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTT 345

Query: 386 ARGTNFNGYNTAAIPTY 402
           A  + FNG+    I   
Sbjct: 346 AYASTFNGFPPPKIVYV 362

This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein. Length = 362
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|233248 TIGR01048, lysA, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>gnl|CDD|143506 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>gnl|CDD|143507 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase A system-associated Back     alignment and domain information
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>gnl|CDD|143510 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic Back     alignment and domain information
>gnl|CDD|236867 PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase Back     alignment and domain information
>gnl|CDD|143502 cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 409
KOG0622448 consensus Ornithine decarboxylase [Amino acid tran 100.0
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 100.0
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 100.0
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 100.0
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 100.0
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 100.0
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 100.0
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 100.0
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 100.0
PRK11165420 diaminopimelate decarboxylase; Provisional 100.0
PLN02537410 diaminopimelate decarboxylase 100.0
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 100.0
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 100.0
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 100.0
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 100.0
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 100.0
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 100.0
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 100.0
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 100.0
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 100.0
PRK05354634 arginine decarboxylase; Provisional 100.0
TIGR01273624 speA arginine decarboxylase, biosynthetic. A disti 100.0
PLN02439559 arginine decarboxylase 100.0
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 100.0
cd00430367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 100.0
TIGR00492367 alr alanine racemase. This enzyme interconverts L- 100.0
PRK00053363 alr alanine racemase; Reviewed 100.0
cd06827354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 100.0
cd06826365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 100.0
PRK13340406 alanine racemase; Reviewed 100.0
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 99.98
cd06825368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 99.97
COG0787360 Alr Alanine racemase [Cell envelope biogenesis, ou 99.97
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.97
PRK03646355 dadX alanine racemase; Reviewed 99.96
cd06819358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.96
cd06815353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.95
cd06812374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.95
PRK11930822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.95
cd06811382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.94
cd06818382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.93
cd06821361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.92
cd06813388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.92
cd06820353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.91
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.88
cd07376345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.86
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.83
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.81
cd06817389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.81
cd06814379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.8
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 99.65
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 99.58
COG3616368 Predicted amino acid aldolase or racemase [Amino a 99.5
COG3457353 Predicted amino acid racemase [Amino acid transpor 99.41
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 98.81
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 98.43
PF00842129 Ala_racemase_C: Alanine racemase, C-terminal domai 98.21
KOG3157244 consensus Proline synthetase co-transcribed protei 96.76
PF07745332 Glyco_hydro_53: Glycosyl hydrolase family 53; Inte 95.29
COG3867403 Arabinogalactan endo-1,4-beta-galactosidase [Carbo 94.62
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 91.16
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 90.83
PRK02308303 uvsE putative UV damage endonuclease; Provisional 89.48
PRK01060281 endonuclease IV; Provisional 89.46
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 87.88
TIGR03234254 OH-pyruv-isom hydroxypyruvate isomerase. This enzy 84.57
PRK12677384 xylose isomerase; Provisional 83.67
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 82.18
PRK13210284 putative L-xylulose 5-phosphate 3-epimerase; Revie 80.33
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-77  Score=561.81  Aligned_cols=375  Identities=44%  Similarity=0.761  Sum_probs=337.3

Q ss_pred             HHHHHHHH--Hhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHH
Q 015304           15 LTEFVRST--ILKR--QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIE   90 (409)
Q Consensus        15 ~~~~~~~~--~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~   90 (409)
                      ...+|++.  +..+  ..... ||||+|+++|.+++++|++.+|+++++||||||++|.|++.|++.|+||+|+|..|++
T Consensus        36 ~r~~i~e~~~~~~~~~~~e~~-aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~  114 (448)
T KOG0622|consen   36 LRNLIEEGTLVAERMETGEKQ-AFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELD  114 (448)
T ss_pred             HHHHHHHhhhhhhhccccccC-ceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHH
Confidence            34444444  4433  33456 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCC
Q 015304           91 AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHH  170 (409)
Q Consensus        91 ~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~  170 (409)
                      +++.+|++|+||||++|+|+.+.|++|.++||...++||.+||.++.+.+|+++++|||++. ++.+.+..+.|||++  
T Consensus       115 lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatd-ds~a~~~l~~KFG~~--  191 (448)
T KOG0622|consen  115 LVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATD-DSTATCRLNLKFGCS--  191 (448)
T ss_pred             HHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccC-CCcccccccCccCCC--
Confidence            99999999999999999999999999999999988999999999999999999999999984 445566677899999  


Q ss_pred             cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHH
Q 015304          171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAA  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~  250 (409)
                      .+++..+++.+++++++++|+|||+||.+.+++.|.+++..++.+++.+.++|+ .+.+||+||||++.+.....|++++
T Consensus       192 ~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf-~m~~LdiGGGf~g~~~~~~~fe~i~  270 (448)
T KOG0622|consen  192 LDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGF-EMDILDIGGGFPGDEGHAVVFEEIA  270 (448)
T ss_pred             HHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcCc-eEEEeecCCCCCCccchhhhhhhHH
Confidence            899999999999999999999999999999999999999999999999999999 8999999999999765446799999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCC------------eeEEEEeCCcCCCccccc
Q 015304          251 SIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE------------MRNYWINDGKYGSFDWVN  318 (409)
Q Consensus       251 ~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~------------~~~~~i~~g~~~~~~~~~  318 (409)
                      +.|+.++.+||+..     ++++++|||||+|++|++|++.|+++|+.+.            +..|+++||+|++|+|.+
T Consensus       271 ~~In~ald~~Fp~~-----~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL  345 (448)
T KOG0622|consen  271 DVINTALDLYFPSG-----GVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCIL  345 (448)
T ss_pred             HHHHHHHHHhCCCC-----CceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhh
Confidence            99999999999752     6889999999999999999999999998432            347999999999999999


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCc
Q 015304          319 YDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAA  398 (409)
Q Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~  398 (409)
                      |+++++.+.+..+..      .+.+.++.+|+||||++.|++.++..||.+.+||||+|.+|||||++++|.||++++| 
T Consensus       346 ~D~~~~i~~~~~~~~------e~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p-  418 (448)
T KOG0622|consen  346 FDHQHPIPLVVKDPS------EEEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRP-  418 (448)
T ss_pred             hcccCCcccccCCCc------cccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCC-
Confidence            999998865444322      1224688999999999999999999999999999999999999999999999999999 


Q ss_pred             EEEEEecC
Q 015304          399 IPTYVVRS  406 (409)
Q Consensus       399 ~v~~~~~~  406 (409)
                      ..+|+.+.
T Consensus       419 ~~~y~~s~  426 (448)
T KOG0622|consen  419 KIYYVMSD  426 (448)
T ss_pred             ceEEEecc
Confidence            56777653

>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5 Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK02308 uvsE putative UV damage endonuclease; Provisional Back     alignment and domain information
>PRK01060 endonuclease IV; Provisional Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase Back     alignment and domain information
>PRK12677 xylose isomerase; Provisional Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
1njj_A425 Crystal Structure Determination Of T. Brucei Ornith 4e-72
1qu4_A425 Crystal Structure Of Trypanosoma Brucei Ornithine D 4e-72
2on3_A461 A Structural Insight Into The Inhibition Of Human A 6e-72
2oo0_A471 A Structural Insight Into The Inhibition Of Human A 7e-72
1d7k_A421 Crystal Structure Of Human Ornithine Decarboxylase 1e-71
1szr_C425 A Dimer Interface Mutant Of Ornithine Decarboxylase 1e-71
2tod_A425 Ornithine Decarboxylase From Trypanosoma Brucei K69 2e-71
7odc_A424 Crystal Structure Ornithine Decarboxylase From Mous 2e-70
2nv9_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 7e-54
2nva_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 7e-54
3btn_A448 Crystal Structure Of Antizyme Inhibitor, An Ornithi 2e-53
4aib_A395 Crystal Structure Of Ornithine Decarboxylase From E 5e-47
2plj_A419 Crystal Structure Of LysineORNITHINE DECARBOXYLASE 3e-36
3c5q_A425 Crystal Structure Of Diaminopimelate Decarboxylase 1e-17
2qgh_A425 Crystal Structure Of Diaminopimelate Decarboxylase 1e-17
3n2b_A441 1.8 Angstrom Resolution Crystal Structure Of Diamin 2e-12
2p3e_A420 Crystal Structure Of Aq1208 From Aquifex Aeolicus L 7e-10
1knw_A425 Crystal Structure Of Diaminopimelate Decarboxylase 2e-08
2yxx_A386 Crystal Structure Analysis Of Diaminopimelate Decar 5e-08
3vab_A443 Crystal Structure Of Diaminopimelate Decarboxylase 6e-07
2j66_A428 Structural Characterisation Of Btrk Decarboxylase F 3e-06
1twi_A434 Crystal Structure Of Diaminopimelate Decarboxylase 4e-04
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine Decarboxylase Bound To D-ornithine And To G418 Length = 425 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (685), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 218/398 (54%), Gaps = 35/398 (8%)
Query: 33  PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAV 92
           PF++ DLG +V  +      LP + P YAVKCN            G+ FDCAS +EI+ V
Sbjct: 39  PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 93  LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPP 152
             +GV P++IIYANPCK +SHI+YA + GV++ TFD V+EL K+ K HPK  +++RI   
Sbjct: 99  RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIS-T 157
Query: 153 DDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXX 212
           DDS A+  L  K+G     ++   +LE A+   + V GV+FH+GS +T            
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 213 XXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLR 272
             VF+    LG N M +LDIGGGF  T      F+E A +I  AL  +FP +L     L 
Sbjct: 216 RFVFDMGTELGFN-MHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDL----KLT 270
Query: 273 VISEPGRFFTYSAFTLYTQIIGKRV----------HGEMRN----YWINDGKYGSFDWVN 318
           +++EPGR++  SAFTL   +I K+V          H E       Y++NDG YGSF+ + 
Sbjct: 271 IVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCIL 330
Query: 319 YDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFS 378
           YD A+ +                 + Y S V+GPTCD  D++   + LPE++V +WL+F 
Sbjct: 331 YDHAVVR------PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFE 384
Query: 379 EMGAYTRARGTNFNGYNTAAI-------PTYVVRSNRT 409
           +MGAYT    ++FNG+ +  I       P +VVR  ++
Sbjct: 385 DMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine Decarboxylase Length = 425 Back     alignment and structure
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy- 1-Aminopropane Length = 461 Back     alignment and structure
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy-1-Aminopropane Length = 471 Back     alignment and structure
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals Structure Of Gem Diamine Intermediate Length = 425 Back     alignment and structure
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a Mutant In Complex With Alpha-Difluoromethylornithine Length = 425 Back     alignment and structure
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse, Truncated 37 Residues From The C-Terminus, To 1.6 Angstrom Resolution Length = 424 Back     alignment and structure
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Length = 372 Back     alignment and structure
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Bound To Agmatine Length = 372 Back     alignment and structure
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine Decarboxylase Homologous Protein Length = 448 Back     alignment and structure
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From Entamoeba Histolytica. Length = 395 Back     alignment and structure
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE COMPLEXED WITH Putrescine From Vibrio Vulnificus Length = 419 Back     alignment and structure
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l Mutant) From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. Length = 441 Back     alignment and structure
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus Length = 420 Back     alignment and structure
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase Length = 425 Back     alignment and structure
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate Decarboxylate (Lysa) Length = 386 Back     alignment and structure
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Brucella Melitensis Bound To Plp Length = 443 Back     alignment and structure
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From Butirosin Biosynthesis Length = 428 Back     alignment and structure
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M. Jannaschii In Co-Complex With L-Lysine Length = 434 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 1e-158
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 1e-153
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 1e-153
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 1e-152
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 1e-152
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 1e-146
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 7e-40
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 4e-39
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 2e-38
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 4e-37
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 2e-36
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 6e-36
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 2e-35
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 3e-34
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 6e-34
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 7e-34
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 1e-31
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 3e-30
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 4e-28
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 4e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
 Score =  448 bits (1155), Expect = e-158
 Identities = 134/390 (34%), Positives = 203/390 (52%), Gaps = 18/390 (4%)

Query: 15  LTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEAL 74
           +   V + ILK        FY+    +V  L +Q     P + PHYAVKCN +  LL+ +
Sbjct: 1   MNSVVNN-ILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTM 59

Query: 75  AALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELH 134
                NFDCAS SEI+ V+ +GVSP RII+A+  K +  + +A + GV++ TFDS  EL 
Sbjct: 60  CDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELD 119

Query: 135 KIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194
           KI  +HP C +++RI+  DD  A   L +K+G +    EI  LLE A+   + V+G++FH
Sbjct: 120 KIHTYHPNCKMILRIR-CDDPNATVQLGNKFGAN--EDEIRHLLEYAKQLDIEVIGISFH 176

Query: 195 IGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIK 254
           +GS +    AY  AI ++K  F  A  +G+    +LDIGGG        +     +  I 
Sbjct: 177 VGSGSRNPEAYYRAIKSSKEAFNEAISVGHK-PYILDIGGGLHADIDEGELSTYMSDYIN 235

Query: 255 EALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSF 314
           +A+  +FP +     ++ +++EPGRFF      L TQ+IGKRV   +  Y+ N+  YG F
Sbjct: 236 DAIKDFFPED-----TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGF 290

Query: 315 DWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDW 374
             V +++++           L           S ++G TCD  D +     LPEL + DW
Sbjct: 291 SNVIFEKSVPTPQL------LRDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDW 344

Query: 375 LVFSEMGAYTRARGTNFNGYNTAAIPTYVV 404
           + F   GAYT    T+FNG+    +  Y +
Sbjct: 345 VYFPSWGAYTNVLTTSFNGFGEYDV--YYI 372
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Length = 420 Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425 Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Length = 443 Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Length = 386 Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Length = 434 Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441 Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Length = 467 Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Length = 666 Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Length = 648 Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 100.0
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 100.0
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 100.0
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 100.0
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 100.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 100.0
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 100.0
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 100.0
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 100.0
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 100.0
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 100.0
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 100.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 100.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 100.0
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 100.0
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 100.0
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 100.0
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 100.0
3nzq_A666 ADC, biosynthetic arginine decarboxylase; alpha-be 100.0
3n2o_A648 ADC, biosynthetic arginine decarboxylase; lyase; H 100.0
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 100.0
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 100.0
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 100.0
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 100.0
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 100.0
3co8_A380 Alanine racemase; protein structure initiative II, 100.0
1rcq_A357 Catabolic alanine racemase DADX; alpha-beta barrel 100.0
2rjg_A379 Alanine racemase; alpha/beta barrel, cell shape, c 100.0
4ecl_A374 Serine racemase, vantg; antibiotic resistance, van 100.0
3e5p_A371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.98
3kw3_A376 Alanine racemase; niaid, ssgcid, seattle structura 99.97
4a3q_A382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.97
3mub_A367 Alanine racemase; alpha/beta barrel, extended beta 99.97
3anu_A376 D-serine dehydratase; PLP-dependent fold-type III 99.97
3hur_A395 Alanine racemase; structural genomics, isomerase, 99.96
3llx_A376 Predicted amino acid aldolase or racemase; structu 99.93
3gwq_A426 D-serine deaminase; structural genomics, joint cen 99.92
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 99.84
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 99.64
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 99.55
3r79_A244 Uncharacterized protein; PSI-biology, structural g 99.43
1i60_A278 IOLI protein; beta barrel, structural genomics, PS 89.53
3m0m_A438 L-rhamnose isomerase; beta/alpha barrel, HOMO-tetr 89.48
3qc0_A275 Sugar isomerase; TIM barrel, structural genomics, 88.88
1ur4_A399 Galactanase; hydrolase, beta-1, glycoside hydrolas 88.44
3obe_A305 Sugar phosphate isomerase/epimerase; structural ge 87.97
3tva_A290 Xylose isomerase domain protein TIM barrel; struct 86.5
3vni_A294 Xylose isomerase domain protein TIM barrel; D-psic 86.24
3ktc_A333 Xylose isomerase; putative sugar isomerase, struct 85.96
3ngf_A269 AP endonuclease, family 2; structural genomics, se 85.78
3cqj_A295 L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre 85.77
3kws_A287 Putative sugar isomerase; structural genomics, joi 84.9
2x7v_A287 Probable endonuclease 4; DNA repair protein, metal 84.04
1fob_A334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 83.82
1k77_A260 EC1530, hypothetical protein YGBM; TIM barrel, str 82.53
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 81.22
2q02_A272 Putative cytoplasmic protein; structural genomics, 80.38
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
Probab=100.00  E-value=7.5e-76  Score=586.94  Aligned_cols=387  Identities=40%  Similarity=0.691  Sum_probs=335.4

Q ss_pred             eeEEEeeccccHHHHHHHHHhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcE
Q 015304            4 QRVTTVVTKEELTEFVRSTILKR--QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNF   81 (409)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~   81 (409)
                      .++.-++...+++++|++++.+.  ++.+| |+|+||+++|++|+++|++++|+++++||+|||+++.|++.+.+.|+||
T Consensus         9 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t-P~~v~dl~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~   87 (424)
T 7odc_A            9 FDCHILDEGFTAKDILDQKINEVSSSDDKD-AFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGF   87 (424)
T ss_dssp             EEEEEECSSCCHHHHHHHHHC------CCC-CEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEE
T ss_pred             ccEEEecCCCCHHHHHHHHHhhcccCCCCC-cEEEeeHHHHHHHHHHHHHhCCCCeEEEEeccCCcHHHHHHHHHcCCcE
Confidence            35666777899999999999876  34799 9999999999999999999999999999999999999999999999999


Q ss_pred             EEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCC
Q 015304           82 DCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPL  161 (409)
Q Consensus        82 ~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~  161 (409)
                      +|+|.+|++.++++|+++++|+|+||+|++++|+.|+++|+..++|||++||++|.+.+++.+++||||++.. ......
T Consensus        88 dvaS~~E~~~~~~~G~~~~~Ii~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~~~~-~~~~~~  166 (424)
T 7odc_A           88 DCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDS-KAVCRL  166 (424)
T ss_dssp             EECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC----------
T ss_pred             EECCHHHHHHHHHcCCChhhEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECCCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999976799999999999999999999999998532 222334


Q ss_pred             CCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC
Q 015304          162 DSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS  241 (409)
Q Consensus       162 ~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~  241 (409)
                      ++|||++  ++++.++++.+++.++++.|||||+||++.+.+.|.++++++.++++.+++.|+ ++++||+||||++.+.
T Consensus       167 ~skfG~~--~~~~~~~~~~~~~~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~-~~~~ldiGGG~~~~~~  243 (424)
T 7odc_A          167 SVKFGAT--LKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF-SMHLLDIGGGFPGSED  243 (424)
T ss_dssp             --CCCBC--HHHHHHHHHHHHHTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTC-CCCEEECCCCCCCSSS
T ss_pred             CCCCCCC--HHHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCCcCCCCC
Confidence            5999999  999999999888889999999999999999999999999999999998899998 9999999999998765


Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeC--------------CeeEEEEe
Q 015304          242 NTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHG--------------EMRNYWIN  307 (409)
Q Consensus       242 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g--------------~~~~~~i~  307 (409)
                      ..++++++++.|++.++++|+..    ++++|++|||||++++||+|+|+|+++|+..              ..++|+++
T Consensus       244 ~~~~~~~~a~~i~~~~~~~~~~~----~~~~ii~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~  319 (424)
T 7odc_A          244 TKLKFEEITSVINPALDKYFPSD----SGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVN  319 (424)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSCGG----GTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEES
T ss_pred             CCCCHHHHHHHHHHHHHHHhccc----CCcEEEECCCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEe
Confidence            56799999999999999998632    3578999999999999999999999999743              14678999


Q ss_pred             CCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCcccccc
Q 015304          308 DGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRAR  387 (409)
Q Consensus       308 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~  387 (409)
                      +|+++++++.+|+++++.|.......      ...+.++++|+||+|+++|++.+++.||++++||||+|.++|||+++|
T Consensus       320 ~g~~~~~~~~ly~~~~~~p~~~~~~~------~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~  393 (424)
T 7odc_A          320 DGVYGSFNCILYDHAHVKALLQKRPK------PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAA  393 (424)
T ss_dssp             CCTTTTTHHHHHSCCCCCCEESSCCC------TTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGG
T ss_pred             CCcCCChhhHhhccCccceeeecCCC------CCCCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhh
Confidence            99999999999998875432222111      112457899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcEEEEEec
Q 015304          388 GTNFNGYNTAAIPTYVVR  405 (409)
Q Consensus       388 ~~~fn~~~~p~~v~~~~~  405 (409)
                      +|+||++++|+++++..+
T Consensus       394 ss~fN~~~~p~~v~~~~~  411 (424)
T 7odc_A          394 ASTFNGFQRPNIYYVMSR  411 (424)
T ss_dssp             CCCGGGCCCCEEEEEEEH
T ss_pred             ccCCCCCCCCeEEEEEcc
Confidence            999999999987766543
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Back     alignment and structure
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A* Back     alignment and structure
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} Back     alignment and structure
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} Back     alignment and structure
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* Back     alignment and structure
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 Back     alignment and structure
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A Back     alignment and structure
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 409
d7odca2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 1e-40
d1f3ta2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 1e-35
d1f3ta1169 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine 3e-27
d1hkva2265 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase L 3e-27
d7odca1177 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine d 1e-22
d1twia2264 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase L 1e-22
d1knwa2247 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase L 9e-22
d1knwa1174 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarb 3e-10
d1hkva1181 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarb 1e-06
d1twia1170 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decar 2e-05
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Length = 240 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  142 bits (358), Expect = 1e-40
 Identities = 109/248 (43%), Positives = 154/248 (62%), Gaps = 8/248 (3%)

Query: 38  DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGV 97
           DLG ++  + + +  LP + P YAVKCN   A++  LAA+G+ FDCAS++EI+ V  LGV
Sbjct: 1   DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGV 60

Query: 98  SPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGA 157
             +R+IYANPCK VS IKYAA+ GV + TFDS  EL K+ + HPK  L++RI   DDS A
Sbjct: 61  PAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKA 119

Query: 158 KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFE 217
              L  K+G          LLE A+   + V+GV+FH+GS  T    +  A++ A+ VF+
Sbjct: 120 VCRLSVKFGATLK--TSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFD 177

Query: 218 TAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEP 277
            A  +G + M +LDIGGGF  +      F+E  S+I  AL  YFP++    S +R+I+EP
Sbjct: 178 MATEVGFS-MHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSD----SGVRIIAEP 232

Query: 278 GRFFTYSA 285
           GR++  SA
Sbjct: 233 GRYYVASA 240
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Length = 240 Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Length = 169 Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 265 Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 177 Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 264 Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 100.0
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 100.0
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 100.0
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 100.0
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 100.0
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.96
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.95
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.93
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.92
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.91
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.86
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 99.77
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 99.75
d1rcqa1131 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 98.42
d1vfsa1145 Alanine racemase {Streptomyces lavendulae [TaxId: 98.35
d1bd0a1148 Alanine racemase {Bacillus stearothermophilus [Tax 98.19
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 97.58
d1i60a_278 Hypothetical protein IolI {Bacillus subtilis [TaxI 91.68
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=1e-49  Score=367.09  Aligned_cols=240  Identities=43%  Similarity=0.761  Sum_probs=218.2

Q ss_pred             eHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHH
Q 015304           38 DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYA  117 (409)
Q Consensus        38 d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a  117 (409)
                      |++.|.+++++|+++||+++++||+|||+++.|++.+.++|+|+||+|.+|++.|+++|+++++|+|+||.|+.++|+.|
T Consensus         1 dl~~i~~~~~~~~~~~p~v~~~YA~KaN~~~~il~~l~~~g~g~dv~S~~El~~al~~G~~~~~Iif~g~~k~~~ei~~a   80 (240)
T d1f3ta2           1 DLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYA   80 (240)
T ss_dssp             EHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEeccCCCHHHHHHHHHcCCCeEeccchhHHHHHHcCCCccceeeccccchhHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCC
Q 015304          118 ANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGS  197 (409)
Q Consensus       118 ~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs  197 (409)
                      +++|+.++++||++|++++.+.++..++.+|+++... .......+|||++  .+++.++++.++..++++.|||+|+||
T Consensus        81 ~~~g~~~~~~ds~~el~~i~~~~~~~~~~~ri~~~~~-~~~~~~~~kFGi~--~~~~~~~~~~~~~~~~~l~GlH~H~GS  157 (240)
T d1f3ta2          81 RDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDS-LARCRLSVKFGAK--VEDCRFILEQAKKLNIDVTGVSFHVGS  157 (240)
T ss_dssp             HHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------CCSCBC--HHHHHHHHHHHHHTTCEEEEEECCCCS
T ss_pred             HHhcccceeeeehhhhhhhhhhccccccccccccccc-cccccccccchhh--HHHHHHHHHHHhccccceeeeeeehhh
Confidence            9999987899999999999999999999999998432 1122234899999  999999999988889999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304          198 AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEP  277 (409)
Q Consensus       198 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep  277 (409)
                      +..+.+.|.++++.+..+++.+++.|+ ++.+||+||||++.|...++++++++.|.+.++++++..    .+++|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~l~~EP  232 (240)
T d1f3ta2         158 GSTDASTFAQAISDSRFVFDMGTELGF-NMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPD----LKLTIVAEP  232 (240)
T ss_dssp             CCSCTHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCCCCSSTTSSSCHHHHHHHHHHHHHHHSCCC----TTCEEEECC
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCC-CceeeeccCccCCCCCCCCCHHHHHHHHHHHHHHhcCcC----CCCEEEEec
Confidence            999999999999888889998889998 999999999999999878899999999999999998643    357899999


Q ss_pred             Cceeeecc
Q 015304          278 GRFFTYSA  285 (409)
Q Consensus       278 GR~lv~~a  285 (409)
                      |||+|++|
T Consensus       233 GR~lva~A  240 (240)
T d1f3ta2         233 GRYYVASA  240 (240)
T ss_dssp             SHHHHGGG
T ss_pred             CHHHhcCC
Confidence            99999986
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rcqa1 b.49.2.2 (A:1-7,A:234-357) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a1 b.49.2.2 (A:2-11,A:245-382) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure