Citrus Sinensis ID: 015457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccHHHHHccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEcccccccccHHHHHHHHccccccEEEccccccccHHHHcccccccccEEEcccccccHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccHHHEccccc
Coil and Loop (DISEMBL)
mtenlsglsnltslsfRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIkwcncitdsdmkplsgltnlkslQISCSKVTDSGIAYLKGLQKLTllnlegcpvtAACLDSLSALGSLFYLnlnrcqlsddgcekfskigslkvlnlgfneITDECLVHLkgltnleslnldscgigdeglvnltglcnlkclelsdtqvgssglrhlsgltnlesinlsftgisdgslrklaglsslkslnldarQITDTGLAALtsltglthldlfgaritDSGAAYLRNFKNLRSLEIcgggltdagvkhikdlssltllnlsqncnltdkTLELISGLTGlvslnvsnsritsaglrhlkplknlrsltlESCKVTANDIkrlqsrdlpnlvsfrpe
Flexible Loop (DISEMBL)
mtenlsglsnltsLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGlvnlkglmkLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSritsaglrhlkplknlrslTLESCKVtandikrlqsrdlpnlvsfrpe
Low Complexity Region (SEG)
MTEnlsglsnltslsFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYlkglqkltllnlEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQItdtglaaltsltglthlDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDlssltllnlsqncnlTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Disordered region (IsUnstruct)
***************FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI*****************
Disordered Region (DISOPRED)
MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP*
Disordered Region (DISEMBL)
********SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Disordered Region (DISPRO)
MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q8BID8	400	F-box/LRR-repeat protein	yes	no	0.714	0.725	0.328	5e-18
Q17R01	400	F-box/LRR-repeat protein	yes	no	0.714	0.725	0.328	5e-18
Q8N1E6	418	F-box/LRR-repeat protein	yes	no	0.741	0.720	0.324	6e-18
Q723K6	800	Internalin-A OS=Listeria	yes	no	0.721	0.366	0.321	3e-13
G2K3G6	800	Internalin-A OS=Listeria	yes	no	0.721	0.366	0.318	5e-13
P0DJM0	800	Internalin-A OS=Listeria	yes	no	0.721	0.366	0.318	7e-13
Q723X5	1775	Internalin-I OS=Listeria	no	no	0.852	0.194	0.283	2e-09
P35859	603	Insulin-like growth facto	no	no	0.938	0.631	0.251	3e-09
P70389	603	Insulin-like growth facto	no	no	0.938	0.631	0.256	2e-08
Q8YA32	1778	Internalin-I OS=Listeria	no	no	0.879	0.200	0.267	2e-08

>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400

Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.
Mus musculus (taxid: 10090)

>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 391
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Bos taurus (taxid: 9913)

>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 184/351 (52%), Gaps = 50/351 (14%)

Query: 79  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 138 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 192
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 193 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 241
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 242 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 296
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 297 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 354
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 355 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           +   +RIT  GL  +  L  L+ L L   ++T  D ++    D   L + R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVR 411

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Homo sapiens (taxid: 9606)

>sp|Q723K6|INLA_LISMF Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ LSNLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLSNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|G2K3G6|INLA_LISM4 Internalin-A OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=inlA PE=3 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|P0DJM0|INLA_LISMO Internalin-A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlA PE=1 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L+ L+NLT L+   NN IT   +     L NL +L+L   T     +  L GL  L+ L+
Sbjct: 138 LANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLS 192

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +TD  +KPL+ LT L+ L IS +KV+D  +     L KLT  NLE    T   +
Sbjct: 193 F--GNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQI 241

Query: 125 DSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L
Sbjct: 242 SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKL 297

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
             L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD
Sbjct: 298 TELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 353

Query: 242 ----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
                SL K                LA L+++  L+    QI+D  L  L +LT +T L 
Sbjct: 354 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLG 411

Query: 282 LFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 323
           L     T++   Y  N       KN+    I    ++D G     D++
Sbjct: 412 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459

Mediates the entry of L.monocytogenes into cells.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 190/423 (44%), Gaps = 77/423 (18%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L  L NLTSL+   NN      +     L+NLV L+L      +  LVNL G      
Sbjct: 173 EGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG------ 219

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
                           + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +   
Sbjct: 220 ----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKTL 262

Query: 123 CLDSLSA--LGSL--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
            LD+ +   L  L  FYL  N   L+D      +K+  LK L +  N  + + L  LKG 
Sbjct: 263 ELDNPAGAILPELETFYLQEN--DLTD--LTSLAKLPKLKNLYIKGN-ASLKSLATLKGA 317

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFT 237
           T L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++  
Sbjct: 318 TKLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITAD 372

Query: 238 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
             +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L 
Sbjct: 373 SCAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LD 428

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC----------------NLTDKT 340
           N   L  L++    LT   +  I DL  L+ L++S N                 N++   
Sbjct: 429 NLPKLEKLDLKENQLT--SISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNR 486

Query: 341 LELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
           L  +S LT   SL   NVSN+ I + G   +  L +L+    ++  V+  DI  +   D+
Sbjct: 487 LSDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNVS--DISMI--HDM 540

Query: 398 PNL 400
           PNL
Sbjct: 541 PNL 543

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 159/402 (39%), Gaps = 21/402 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
             GLS+L  L+   N+ +       F GL NL +L L   + T +   L    GL +L  
Sbjct: 166 FQGLSHLWDLNLGWNSLVVLPD-TVFQGLGNLHELVLAGNKLTYLQPAL--FCGLGELRE 222

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N +          L  L+ L +  + +T        G++ L  L+L    V   
Sbjct: 223 LDLS-RNALRSVKANVFVHLPRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSHNRVAGL 281

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             D+   L  L  L L    ++      F  +  L+ L LG N I        +GL  LE
Sbjct: 282 MEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQLGERTFEGLGQLE 341

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L+   I +  +   +GL N+  + LS   + S   R   GL  L S++L  + +   
Sbjct: 342 VLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHV 401

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L   AGLS L+ L L    I+     +L  L+ L  LDL   R+T       +   +L 
Sbjct: 402 RLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLFQGLGHLE 461

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L +    LT    + +  L     L++S N +L      L S L  +  L++ N+ + +
Sbjct: 462 YLLLSYNQLTTLSAEVLGPLQRAFWLDISHN-HLETLAEGLFSSLGRVRYLSLRNNSLQT 520

Query: 363 ----AGLRHLK----------PLKNLRSLTLESCKVTANDIK 390
                GL  L           PLK LR   L++  V    ++
Sbjct: 521 FSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 154/402 (38%), Gaps = 21/402 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
             GLS+L  L+   N+ +       F GL NL +L L   + T +   L  L GL +L  
Sbjct: 166 FRGLSHLWDLNLGWNSLVVLPD-TVFQGLGNLHELVLAGNKLTYLQPAL--LCGLGELRE 222

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N +          L  L+ L +  + +T        G++ L  L+L    V   
Sbjct: 223 LDLS-RNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGL 281

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             D+   L  L  L L    ++      F  +  L+ L LG N I        +GL  LE
Sbjct: 282 LEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLE 341

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L+   I +  +    GL N+  + LS   + S       GL  L S++L  + +   
Sbjct: 342 VLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLGRI 401

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L   AGLS L+ L L    I+     +L  L+ L  LDL   ++T       +    L 
Sbjct: 402 RLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLE 461

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN----S 358
            L +    LT      +  L     L+LS N  L      L S L  L  LN+ N    +
Sbjct: 462 YLLLSNNQLTMLSEDVLGPLQRAFWLDLSHN-RLETPAEGLFSSLGRLRYLNLRNNSLQT 520

Query: 359 RITSAGLRHLK----------PLKNLRSLTLESCKVTANDIK 390
            +   GL  L           PLK LR   L++  V    ++
Sbjct: 521 FVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 196/468 (41%), Gaps = 111/468 (23%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LMK 59
           E L  L NLTSL+   NN      +     L+NLV L+L      +  LVNL G   L+ 
Sbjct: 176 EGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLVN 228

Query: 60  LESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI--------------------- 90
           L+ LN+     + D S +  L  L        N+K+L++                     
Sbjct: 229 LQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDL 288

Query: 91  ----SCSKVTDSGIAYLKGLQKL-TLLNLEGCP----VTAACLDSLSALGSLFYLN-LNR 140
               S +K+      Y+KG   L +L  L G      + A+    L  LG +  L+ L  
Sbjct: 289 TNLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQLIDASNCTDLETLGDISGLSELEM 348

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 200
            QLS  GC K  +I S                  LK L NL ++  DSC I D G +N  
Sbjct: 349 IQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLGTLN-- 386

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN-LSFTGISDGSLRKLAGLSSLKSLNLD 259
            L  L+ L LSD +     L +++ +T+L  +  L+  G    S+  L  L  L+ L+L 
Sbjct: 387 NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLK 442

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
             QI  T ++ +T L  L++LD+    +T  G   L+    L  L +    L+D  V  +
Sbjct: 443 ENQI--TSISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD--VSTL 496

Query: 320 KDLSSLTLLNLS---------------------QNCNLTDKTLELISGLTGLVSLNVSNS 358
            +  SL  +N+S                     QN +++D  + +I  +  L  ++ SN+
Sbjct: 497 TNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISD--ISMIHDMPNLRKVDASNN 554

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            IT+ G      L  L+SL + S ++T+  +      DLP+L +F  +
Sbjct: 555 LITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
449436168	578	PREDICTED: F-box/LRR-repeat protein 14-l	0.982	0.690	0.796	1e-170
359484681	578	PREDICTED: insulin-like growth factor-bi	0.992	0.697	0.772	1e-170
225463572	578	PREDICTED: F-box/LRR-repeat protein 14 [	0.982	0.690	0.809	1e-168
356519276	577	PREDICTED: F-box/LRR-repeat protein 14-l	0.980	0.689	0.803	1e-165
357468127	573	F-box/LRR-repeat protein [Medicago trunc	0.982	0.696	0.766	1e-164
357458869	585	F-box/LRR-repeat protein [Medicago trunc	0.995	0.690	0.75	1e-163
388500850	577	unknown [Medicago truncatula]	0.980	0.689	0.752	1e-162
182407840	580	F-box-containing protein 1 [Malus x dome	0.995	0.696	0.752	1e-161
224120462	576	predicted protein [Populus trichocarpa]	0.992	0.699	0.737	1e-160
356550632	565	PREDICTED: F-box/LRR-repeat protein 14-l	0.985	0.707	0.757	1e-158

>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus] gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 321/403 (79%), Positives = 363/403 (90%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           ++ G S LTSLSFR+N+ ITAQGM  FA L+NL++LDLE+C  IHGGLV+L+GL KLESL
Sbjct: 176 HIGGFSRLTSLSFRKNSEITAQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESL 235

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           NIKWCNCITDSD+KPLSGLTNLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAAC
Sbjct: 236 NIKWCNCITDSDIKPLSGLTNLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAAC 295

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
           L +LSALG+L YLNL+RC ++DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLES
Sbjct: 296 LYTLSALGALQYLNLSRCHITDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLES 355

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LNLDSC I D+GLVNL  L  LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D  
Sbjct: 356 LNLDSCRIEDDGLVNLKALHRLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIG 415

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
           L+KL+GLSSLKSLNLD RQITD GLA+LT L GLTHLDLFGARITDSG  YLRNFKNL+S
Sbjct: 416 LKKLSGLSSLKSLNLDTRQITDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQS 475

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           LEICGGGLTDAGVK+IKDLSSL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSA
Sbjct: 476 LEICGGGLTDAGVKNIKDLSSLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSA 535

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           GLRHLK LKNL+ LTLE+C+V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 536 GLRHLKTLKNLKQLTLEACRVSASDIKKLQSTDLPNLVSFRPE 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera] gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 312/404 (77%), Positives = 362/404 (89%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +N+SGLSNLTSLSF+++N +TA+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLES
Sbjct: 175 KNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLES 234

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI++C CITDSD+K LSGLT+LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +
Sbjct: 235 LNIRYCKCITDSDLKALSGLTSLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTS 294

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSLSAL +L YLNLNRC LSD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLE
Sbjct: 295 CLDSLSALVALSYLNLNRCGLSDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLE 354

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC I DEGL NLTGL  LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D 
Sbjct: 355 SLNLDSCSIEDEGLANLTGLSLLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDS 414

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L+KL GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+D+G   LR+FKNL+
Sbjct: 415 GLKKLCGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQ 474

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           +LEICGGGLTDAGVK+IK L+SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+
Sbjct: 475 TLEICGGGLTDAGVKNIKGLASLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITN 534

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GL+HLKPLKNL SL+LESCKVTA++I++LQS  LPNLVSFRPE
Sbjct: 535 NGLQHLKPLKNLLSLSLESCKVTASEIRKLQSTALPNLVSFRPE 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera] gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 327/404 (80%), Positives = 367/404 (90%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGLSNLT+LSFRRNNAITAQGM AF+ L+NLVKLDLERC  IHGGL++LKGL KLES
Sbjct: 175 KHISGLSNLTTLSFRRNNAITAQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLES 234

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI  C+CITD+D+KPLSGLTNLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAA
Sbjct: 235 LNINMCHCITDADLKPLSGLTNLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAA 294

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL+SLS L SL  LNLNR  LSDDGCE F++  +L+VLNLGFN++TD CLVHLKGLTNLE
Sbjct: 295 CLESLSDLPSLLSLNLNRSMLSDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLE 354

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC I DEGL NLTGL +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D 
Sbjct: 355 SLNLDSCRICDEGLANLTGLRHLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDS 414

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL+ LSSLKSLNLDARQITD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+
Sbjct: 415 GLRKLSALSSLKSLNLDARQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQ 474

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+
Sbjct: 475 SLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITN 534

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNLVSFRPE
Sbjct: 535 AGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLVSFRPE 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 324/403 (80%), Positives = 357/403 (88%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNLTSLSFRRN++I+AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLES
Sbjct: 174 ECISGLSNLTSLSFRRNDSISAQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+KWCNCITD DMKPLS L +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAA
Sbjct: 234 LNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSL+ L +L  LNLNRC LSD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LE
Sbjct: 294 CLDSLAELPALSNLNLNRCNLSDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGLVNL GL  L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD 
Sbjct: 354 SLNLDSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDS 413

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           SLRKL+GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR
Sbjct: 414 SLRKLSGLSSLKSLNLDAYQITDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLR 473

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGG LTDAGVK+IK+LSSL  LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+
Sbjct: 474 SLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITN 533

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 405
           AGL+HLK LKNLRSLTLESCKVTANDIK+L+S  LPNLVSFRP
Sbjct: 534 AGLQHLKTLKNLRSLTLESCKVTANDIKKLKSIYLPNLVSFRP 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 306/399 (76%), Positives = 343/399 (85%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           LSNLTSLSFRRN++I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KW
Sbjct: 175 LSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKW 234

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
           CNCITDSD+KPLS L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSL
Sbjct: 235 CNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSL 294

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
           S L +L  LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLD
Sbjct: 295 SELPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLD 354

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
           SC IGDEGL NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL
Sbjct: 355 SCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKL 414

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 307
            GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC
Sbjct: 415 CGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEIC 474

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 367
            GGLTDAGVK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+H
Sbjct: 475 SGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQH 534

Query: 368 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           LK LKNLRSLTLESCKVTANDIK+ +   LPNLVSFRPE
Sbjct: 535 LKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 573

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 309/412 (75%), Positives = 347/412 (84%), Gaps = 8/412 (1%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNLTSLSFRRN++I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLES
Sbjct: 174 ECISGLSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+KWCNCITDSD+KPLS L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+A
Sbjct: 234 LNMKWCNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSA 293

Query: 123 CLDSLSA--------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
           CLDSLS         L +L  LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H
Sbjct: 294 CLDSLSGCHEHTIPKLPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAH 353

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +KGLT LESLNLDSC IGDEGL NL G   L CLELSDT+VG+ GL HLSGL++LE INL
Sbjct: 354 MKGLTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINL 413

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           SFT +SD  LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  Y
Sbjct: 414 SFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNY 473

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L+ FKNLRSLEIC GGLTDAGVK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN
Sbjct: 474 LKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLN 533

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           +SN+RITSAGL+HLK LKNLRSLTLESCKVTANDIK+ +   LPNLVSFRPE
Sbjct: 534 LSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 304/404 (75%), Positives = 342/404 (84%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNLTSLSFRRN++I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLES
Sbjct: 174 ECISGLSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+KWCNCITDSD+KPLS L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+A
Sbjct: 234 LNMKWCNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSLS L +L  LNLNRC +S  GCE+FS++  LKVLNLGFN+I D CL H+KGLT LE
Sbjct: 294 CLDSLSELPALSNLNLNRCNISGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGL NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD 
Sbjct: 354 SLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDS 413

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR
Sbjct: 414 GLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLR 473

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            LEIC GGLTDAGVK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT 
Sbjct: 474 PLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITF 533

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           AGL+HLK LKNLR LTLESCKVT NDIK+ +   LPNLVSFRPE
Sbjct: 534 AGLQHLKTLKNLRFLTLESCKVTVNDIKKFKLIHLPNLVSFRPE 577

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 304/404 (75%), Positives = 363/404 (89%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           +++SGLSNLTSLSF+R++AI+A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+S
Sbjct: 177 KHISGLSNLTSLSFKRSDAISAEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKS 236

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN++ C CITDSD+K +SGL +L  LQ+S   +TDSGI+YLKGL KL +LNLEGC VTA+
Sbjct: 237 LNVRCCRCITDSDLKTISGLIDLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTAS 296

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CL S+SAL +L YLNLNRC LSD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LE
Sbjct: 297 CLQSISALVALAYLNLNRCSLSDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLE 356

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEGL NL GL +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D 
Sbjct: 357 SLNLDSCKIGDEGLANLAGLTHLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDS 416

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           SL++L+GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+
Sbjct: 417 SLKRLSGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQ 476

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+IKDL  LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+
Sbjct: 477 SLEICGGGLTDAGVKNIKDLVCLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITN 536

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GL+HLKPLKNLRSLTLESCKVTA++I++LQS  LPNLVSFRPE
Sbjct: 537 EGLQHLKPLKNLRSLTLESCKVTASEIRKLQSDALPNLVSFRPE 580

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa] gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/404 (73%), Positives = 351/404 (86%), Gaps = 1/404 (0%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++LSGL+N+TSLS +++ ++TA+GM+AF+ L+NL  LD+ERC+ IHGGLV+LKGL KLES
Sbjct: 174 KHLSGLTNITSLSLKKSCSVTAEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLES 233

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LNI+ C CITD DMK +SGLTNLK LQIS + VTD G++YL+GLQKL +LNLEGC +T A
Sbjct: 234 LNIRCCKCITDMDMKAISGLTNLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTA 293

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDS+SAL +L YLNLNRC L DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLE
Sbjct: 294 CLDSISALATLAYLNLNRCHLPDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLE 353

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC IGDEG+ NL GL  LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG
Sbjct: 354 SLNLDSCRIGDEGIANLAGL-PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDG 412

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            LRKL+GL+SL+SLNLDARQITD GL ALTSLTGLT LDLFGARITDSG   L+ FKNL+
Sbjct: 413 GLRKLSGLTSLRSLNLDARQITDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLK 472

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
           SLEICGGGLTDAGVK+IKDL  LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+
Sbjct: 473 SLEICGGGLTDAGVKNIKDLVHLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITN 532

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
            GLR+LKPLKNLR+LTLESCKVTA++IK+LQS +LPNL S RPE
Sbjct: 533 EGLRYLKPLKNLRALTLESCKVTASEIKKLQSTELPNLASVRPE 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 306/404 (75%), Positives = 344/404 (85%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E +SGLSNL SLSFRRN AI+AQG+  F+GLINLVKLDLERC  IHG LV+++GL  LES
Sbjct: 162 ECISGLSNLASLSFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLES 221

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+ WCNC+ D DMKPLS LTNLKSL+IS +KVTD GI++LKGLQKL LLNLEGC VT A
Sbjct: 222 LNLNWCNCLVDVDMKPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTA 281

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
           CLDSL  L +L  LNL+RC LS+DGCEKFS++ +LKVLNLGFN+ITD CL HLKGLT L+
Sbjct: 282 CLDSLEELPALSNLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLK 341

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SLNLDSC I DEGLV+L G   L CLELSDT +GS+GL HLSGL+NLE INLSFT ++D 
Sbjct: 342 SLNLDSCRIEDEGLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSNLEKINLSFTFVNDS 401

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L KL GLSSLKSLNLDARQ+TDTGLA+LTSLTGLT LDLFGARITD G  YL+ FKNLR
Sbjct: 402 GLSKLCGLSSLKSLNLDARQVTDTGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLR 461

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            LEICGG LTD GVK+IK+LSSL  LNLSQNCNLTD TLELISGLT L+SLNVSNS IT+
Sbjct: 462 LLEICGGELTDDGVKNIKELSSLKSLNLSQNCNLTDTTLELISGLTDLISLNVSNSGITN 521

Query: 363 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           AGL+HLK LKNLRSL+LESCKVTAN IK+LQS DLPNLVSFRP+
Sbjct: 522 AGLQHLKTLKNLRSLSLESCKVTANGIKKLQSTDLPNLVSFRPQ 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2036199	585	AT1G15740 [Arabidopsis thalian	0.963	0.668	0.678	1.7e-137
TAIR|locus:2138131	597	AT4G23840 "AT4G23840" [Arabido	0.573	0.390	0.314	5.3e-18
UNIPROTKB|F1NMM1	345	FBXL14 "Uncharacterized protei	0.726	0.855	0.272	8.6e-15
UNIPROTKB|Q17R01	400	FBXL14 "F-box/LRR-repeat prote	0.726	0.737	0.272	2.8e-14
MGI|MGI:2141676	400	Fbxl14 "F-box and leucine-rich	0.726	0.737	0.272	2.8e-14
RGD|1305523	400	Fbxl14 "F-box and leucine-rich	0.726	0.737	0.272	2.8e-14
UNIPROTKB|Q8N1E6	418	FBXL14 "F-box/LRR-repeat prote	0.726	0.705	0.272	3.2e-14
ZFIN|ZDB-GENE-030131-3556	400	fbxl14b "F-box and leucine-ric	0.726	0.737	0.272	8.3e-14
ZFIN|ZDB-GENE-030131-5920	411	fbxl14a "F-box and leucine-ric	0.817	0.807	0.255	1.8e-12
FB|FBgn0020257	538	ppa "partner of paired" [Droso	0.440	0.332	0.306	1.2e-11

TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
 Identities = 266/392 (67%), Positives = 308/392 (78%)

Query:    16 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
             FRRN AITAQGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESLNIKWCNCITD+D
Sbjct:   194 FRRNAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDAD 253

Query:    76 MKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCP-VTAACLDSLSALGSLF 134
             M+PLS LTNL+SLQI CSK+TD GI+Y            EGC  VTAACLD+L+AL  L 
Sbjct:   254 MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 313

Query:   135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
             YLNLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDE
Sbjct:   314 YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 373

Query:   195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
             GLV+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL+
Sbjct:   374 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 433

Query:   255 SLNLDARQIXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
             +LNLDAR +                 DLFGARITDSG  +LRN K L+SLEICGGGLTD 
Sbjct:   434 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 493

Query:   315 GVKHIKDXXXXXXXXXXXXXXXTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
             GVK+IKD               TDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNL
Sbjct:   494 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNL 553

Query:   375 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
             RSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct:   554 RSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 77/245 (31%), Positives = 120/245 (48%)

Query:    17 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSD 75
             R  +++ A+ M    G +NL+ L+L  C RI+   L  + GL  L  L++  C  +TD+ 
Sbjct:    69 RGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVTDAG 128

Query:    76 MKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFY 135
             MK L  + NLK L IS + VT+ GI+              G PVT   L SL AL  L Y
Sbjct:   129 MKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTKLEY 188

Query:   136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
             L++    +++ G     K  +L  LNL +  IT         + +LE L++++C I  E 
Sbjct:   189 LDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQT-----PNIPHLECLHMNTCTIVSEP 243

Query:   196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
               + + L +LK L LS     S+    LS  TN   I  ++  +S  SL+  + L ++ +
Sbjct:   244 KTH-SSLASLKKLVLSGANF-SAETESLS-FTNKSCI--TYLDVSKTSLKNFSFLETMFN 298

Query:   256 L-NLD 259
             L +LD
Sbjct:   299 LEHLD 303

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 8.6e-15, P = 8.6e-15
 Identities = 89/327 (27%), Positives = 145/327 (44%)

Query:    79 LSGLTNLKSLQIS-CSKVTDSGI--AYXXXXXXXXXXXXEGCP-VTAACLDSLSA-LGSL 133
             + G+ +++SL +S C  +TD+G+  A+              C  +T + L  ++  L  L
Sbjct:    19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78

Query:   134 FYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG 190
               L L  C  +++ G    +  +  LK LNL     ++D  + HL G+T   +       
Sbjct:    79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA------- 131

Query:   191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA 248
                EG + L  L    C +LSD  +     +HL+ GL  L  +NLSF G ISD  L  L+
Sbjct:   132 ---EGCLGLEQLTLQDCQKLSDLSI-----KHLARGLGRLRQLNLSFCGGISDAGLLHLS 183

Query:   249 GLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RNFKNLRSL 304
              +SSL+SLNL +                     L   F  ++ D   AY+ +    LRSL
Sbjct:   184 HMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSL 243

Query:   305 EICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNVSN-SRIT 361
              +C   ++D G+   ++                TDK LELI+  L+ L  +++   +RIT
Sbjct:   244 SLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRIT 303

Query:   362 SAGLRHLKPLKNLRSLTLESCKVTAND 388
               GL  +  L  L+ L L   ++T ++
Sbjct:   304 KRGLERITQLPCLKVLNLGLWEMTESE 330

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 89/327 (27%), Positives = 145/327 (44%)

Query:    79 LSGLTNLKSLQIS-CSKVTDSGI--AYXXXXXXXXXXXXEGCP-VTAACLDSLSA-LGSL 133
             + G+ N++SL +S C  +TD+G+  A+              C  +T + L  ++  L  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   134 FYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG 190
               L L  C  +++ G    +  +  LK LNL     ++D  + HL G+T   +       
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA------- 198

Query:   191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA 248
                EG + L  L    C +L+D       L+H+S GLT L  +NLSF G ISD  L  L+
Sbjct:   199 ---EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250

Query:   249 GLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RNFKNLRSL 304
              + SL+SLNL +                     L   F  ++ D   AY+ +    L+SL
Sbjct:   251 HMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSL 310

Query:   305 EICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNVSN-SRIT 361
              +C   ++D G+   ++                TDK LELI+  L+ L  +++   +RIT
Sbjct:   311 SLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRIT 370

Query:   362 SAGLRHLKPLKNLRSLTLESCKVTAND 388
               GL  +  L  L+ L L   ++T ++
Sbjct:   371 KRGLERITQLPCLKVLNLGLWQMTDSE 397

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 89/327 (27%), Positives = 145/327 (44%)

Query:    79 LSGLTNLKSLQIS-CSKVTDSGI--AYXXXXXXXXXXXXEGCP-VTAACLDSLSA-LGSL 133
             + G+ N++SL +S C  +TD+G+  A+              C  +T + L  ++  L  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   134 FYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG 190
               L L  C  +++ G    +  +  LK LNL     ++D  + HL G+T   +       
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA------- 198

Query:   191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA 248
                EG + L  L    C +L+D       L+H+S GLT L  +NLSF G ISD  L  L+
Sbjct:   199 ---EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250

Query:   249 GLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RNFKNLRSL 304
              + SL+SLNL +                     L   F  ++ D   AY+ +    L+SL
Sbjct:   251 HMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSL 310

Query:   305 EICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNVSN-SRIT 361
              +C   ++D G+   ++                TDK LELI+  L+ L  +++   +RIT
Sbjct:   311 SLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRIT 370

Query:   362 SAGLRHLKPLKNLRSLTLESCKVTAND 388
               GL  +  L  L+ L L   ++T ++
Sbjct:   371 KRGLERITQLPCLKVLNLGLWQMTDSE 397

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

RGD|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 89/327 (27%), Positives = 145/327 (44%)

Query:    79 LSGLTNLKSLQIS-CSKVTDSGI--AYXXXXXXXXXXXXEGCP-VTAACLDSLSA-LGSL 133
             + G+ N++SL +S C  +TD+G+  A+              C  +T + L  ++  L  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   134 FYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG 190
               L L  C  +++ G    +  +  LK LNL     ++D  + HL G+T   +       
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA------- 198

Query:   191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA 248
                EG + L  L    C +L+D       L+H+S GLT L  +NLSF G ISD  L  L+
Sbjct:   199 ---EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250

Query:   249 GLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RNFKNLRSL 304
              + SL+SLNL +                     L   F  ++ D   AY+ +    L+SL
Sbjct:   251 HMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSL 310

Query:   305 EICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNVSN-SRIT 361
              +C   ++D G+   ++                TDK LELI+  L+ L  +++   +RIT
Sbjct:   311 SLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRIT 370

Query:   362 SAGLRHLKPLKNLRSLTLESCKVTAND 388
               GL  +  L  L+ L L   ++T ++
Sbjct:   371 KRGLERITQLPCLKVLNLGLWQMTDSE 397

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|Q8N1E6 FBXL14 "F-box/LRR-repeat protein 14" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 89/327 (27%), Positives = 145/327 (44%)

Query:    79 LSGLTNLKSLQIS-CSKVTDSGI--AYXXXXXXXXXXXXEGCP-VTAACLDSLSA-LGSL 133
             + G+ N++SL +S C  +TD+G+  A+              C  +T + L  ++  L  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   134 FYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG 190
               L L  C  +++ G    +  +  LK LNL     ++D  + HL G+T   +       
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA------- 198

Query:   191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA 248
                EG + L  L    C +L+D       L+H+S GLT L  +NLSF G ISD  L  L+
Sbjct:   199 ---EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250

Query:   249 GLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RNFKNLRSL 304
              + SL+SLNL +                     L   F  ++ D   AY+ +    L+SL
Sbjct:   251 HMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSL 310

Query:   305 EICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNVSN-SRIT 361
              +C   ++D G+   ++                TDK LELI+  L+ L  +++   +RIT
Sbjct:   311 SLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRIT 370

Query:   362 SAGLRHLKPLKNLRSLTLESCKVTAND 388
               GL  +  L  L+ L L   ++T ++
Sbjct:   371 KRGLERITQLPCLKVLNLGLWQMTDSE 397

GO:0005515 "protein binding" evidence=IPI

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

ZFIN|ZDB-GENE-030131-3556 fbxl14b "F-box and leucine-rich repeat protein 14b" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 89/327 (27%), Positives = 148/327 (45%)

Query:    79 LSGLTNLKSLQIS-CSKVTDSGI--AYXXXXXXXXXXXXEGCP-VTAACLDSLSA-LGSL 133
             + G+ N++SL +S C  +TD+G+  A+              C  +T + L  ++  L +L
Sbjct:    86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 145

Query:   134 FYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG 190
               L L  C  +++ G    +  +  LK LNL     ++D  + HL G+T   +       
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAA------- 198

Query:   191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA 248
                EG ++L  L    C +L+D       L+H+S GLT L+ +NLSF G ISD  +  L+
Sbjct:   199 ---EGCLSLEYLTLQDCQKLTDLS-----LKHISKGLTKLKVLNLSFCGGISDAGMIHLS 250

Query:   249 GLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDL---FGARITDSGAAYL-RNFKNLRSL 304
              ++SL SLNL +                     L   F  +I D   AY+ +    L+SL
Sbjct:   251 HMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSL 310

Query:   305 EICGGGLTDAGVKH-IKDXXXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNVSN-SRIT 361
              +C   ++D G+   ++                TDK LELI+  LT L  +++   ++IT
Sbjct:   311 SLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKIT 370

Query:   362 SAGLRHLKPLKNLRSLTLESCKVTAND 388
               GL  +  L  L+ L L   ++T ++
Sbjct:   371 KRGLERITQLPCLKVLNLGLWQMTESE 397

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IC

ZFIN|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 95/372 (25%), Positives = 165/372 (44%)

Query:    38 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 96
             KL L R        +  +G+ K++ L+++       S    + G+ N++SL +S C  +T
Sbjct:    51 KLHLRRANPSLFPSLQTRGIKKVQILSLR------RSLSYVIQGMPNIESLNLSGCYNLT 104

Query:    97 DSGI--AYXXXXXXXXXXXXEGCP-VTAACLDSLSA-LGSLFYLNLNRCQ-LSDDGCEKF 151
             D+G+  A+              C  +T + L  ++  L +L  L+L  C  +++ G    
Sbjct:   105 DNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLI 164

Query:   152 S-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 209
             +  + +LK LNL     ++D  + HL G+T   +          EG + L  L    C +
Sbjct:   165 AWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAA----------EGCLTLEHLTLQDCQK 214

Query:   210 LSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQIXXXX 267
             L+D       L+H+S GL  L+ +NLSF G ISD  +  L+ ++ L +LNL +       
Sbjct:   215 LTDLS-----LKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDT 269

Query:   268 XXXXXXXXXXXXXDL---FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKH-IKDX 322
                           L   F  ++ D   AY+ +    L+SL +C   ++D G+   ++  
Sbjct:   270 GIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQM 329

Query:   323 XXXXXXXXXXXXXXTDKTLELISG-LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 380
                           TDK LELI+  LT L  +++   ++IT  GL  +  L  L+ L L 
Sbjct:   330 HELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLG 389

Query:   381 SCKVTANDIKRL 392
               ++T  ++K L
Sbjct:   390 LWQMT--EVKGL 399

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IC

FB|FBgn0020257 ppa "partner of paired" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 58/189 (30%), Positives = 100/189 (52%)

Query:    32 GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
             G + L  L L+ C R+    +    +GL  L+S+N+ +C  +TDS +K L+ +  L+ L 
Sbjct:   344 GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLN 403

Query:    90 I-SCSKVTDSGIAYXXXXXXXXXXXXEG-CP-VTAACLDSLS-ALGSLFYLNLNRCQLSD 145
             + SC  ++D G+AY               C  ++   L  ++  L  L  L+LN+CQ++D
Sbjct:   404 LRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITD 463

Query:   146 DGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTG 201
              G  K +K +  L+ LN+G  + ITD+ L  L + LTNL++++L  C  +  +G+  +  
Sbjct:   464 HGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMK 523

Query:   202 LCNLKCLEL 210
             L  L+ L L
Sbjct:   524 LPKLQKLNL 532

GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003249001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (578 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037306001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (446 aa)			•						0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	6e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	8e-04
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 74/260 (28%), Positives = 103/260 (39%), Gaps = 34/260 (13%)

Query: 109 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGF 164
           L+L      P    + L  L+    L  L+L+   L  DGC   E   +  SL+ L L  
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 165 NEITDECLVHL-KGLT----NLESLNLDSCGIGDEGLVNLTGL----CNLKCLELSDTQV 215
           N + D  L  L KGL      LE L L    +       L        +LK L L++  +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 216 GSSGLRHL----SGLTNLESINLSFTGISDGSLRKLAG----LSSLKSLNLDARQITDTG 267
           G +G+R L        NLE ++L+  G++D     LA     L SL+ LNL    +TD G
Sbjct: 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237

Query: 268 LAALTS-----LTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKH 318
            AAL S        L  L L    ITD GA      L   ++L  L++ G    + G   
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG--- 294

Query: 319 IKDLSSLTLLNLSQNCNLTD 338
              L + +LL          
Sbjct: 295 -AQLLAESLLEPGNELESLW 313

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 62/235 (26%), Positives = 105/235 (44%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           P   + NL++L +S + ++      +     L +L+L G  +     +SL+ L SL +L 
Sbjct: 135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L   QL      +  ++ SLK + LG+N ++ E    + GLT+L  L+L    +      
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 257
           +L  L NL+ L L   ++       +  L  L S++LS   +S      +  L +L+ L+
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L +   T     ALTSL  L  L L+  + +      L    NL  L++    LT
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 62/254 (24%), Positives = 121/254 (47%), Gaps = 3/254 (1%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           SL YLNL+    +  G      I +L+ L+L  N ++ E    +   ++L+ L+L    +
Sbjct: 119 SLRYLNLSNNNFT--GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 251
             +   +LT L +L+ L L+  Q+     R L  + +L+ I L +  +S     ++ GL+
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 311
           SL  L+L    +T    ++L +L  L +L L+  +++      + + + L SL++    L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 371
           +    + +  L +L +L+L  N N T K    ++ L  L  L + +++ +    ++L   
Sbjct: 297 SGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 372 KNLRSLTLESCKVT 385
            NL  L L +  +T
Sbjct: 356 NNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 83/364 (22%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 4   NLSG-----LSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 56
           NL+G     L NL +L   F   N ++     +   L  L+ LDL     + G +  L  
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPEL-- 303

Query: 57  LMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           +++L++L I   + N  T      L+ L  L+ LQ+  +K +      L     LT+L+L
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
               +T    + L + G+LF L L    L  +  +      SL+ + L  N  + E    
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
              L  +  L++ +         NL G  N +  ++                 +L+ ++L
Sbjct: 424 FTKLPLVYFLDISNN--------NLQGRINSRKWDM----------------PSLQMLSL 459

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +      G L    G   L++L+L   Q +      L SL+ L  L L   +++      
Sbjct: 460 ARNKFF-GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           L + K L SL++    L+        ++  L+ L+LSQN  L+ +  + +  +  LV +N
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN-QLSGEIPKNLGNVESLVQVN 577

Query: 355 VSNS 358
           +S++
Sbjct: 578 ISHN 581

Length = 968

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA- 260
            L+ LEL    +    L  LS    L+ + L     I D  L  LA    +L+ L+L A 
Sbjct: 29  GLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRAC 88

Query: 261 RQITDTGLAAL-TSLTGLTHLDL----FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 314
             ITD+G+ AL T+   L  ++L     G  ITD   + L +N   L+++   G  +TD 
Sbjct: 89  ENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDK 148

Query: 315 GVKHIKDLSSLTLLNLSQN-C-NLTDKTLELISGLTGLVSLNV 355
           GV  +    S +L  LS N C NLTD+++  I       +L+V
Sbjct: 149 GVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 93  SKVTDSGIAYLKGL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
            ++T S I+ L  +    L  L L  CP++   LD LS    L  L L   +L       
Sbjct: 12  GQITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKL------- 64

Query: 151 FSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKC 207
                           I DE L+ L +   NL+ L+L +C  I D G+V L   C  L+ 
Sbjct: 65  ----------------IDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQT 108

Query: 208 LELSDTQVGSS----GLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSS--LKSLNLD- 259
           + L   + G       L  L    T L+++  +   ++D  + +LA   S  L+ L+L+ 
Sbjct: 109 INLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNN 168

Query: 260 ARQITDTGLAALTSLTGLTHLDLF----GARITD 289
            R +TD  + A+ +     +L +        ITD
Sbjct: 169 CRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 36/254 (14%)

Query: 174 HLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGS---------SGL 220
            L  L  L+ L L+   +G+E        L    +LK L LS  + G           GL
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA----ALTSLT- 275
               GL  L+  + +      G L  L   SSL+ L L+   + D GL      L  L  
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 276 GLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTL 327
            L  L L   R+  +     A  LR  ++L+ L +   G+ DAG++ +    K   +L +
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 328 LNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLT 378
           L+L  N  LTD+      E ++ L  L  LN+ ++ +T AG   L      P  +L +L+
Sbjct: 198 LDL-NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 379 LESCKVTANDIKRL 392
           L    +T +  K L
Sbjct: 257 LSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 43/218 (19%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGL---INLVKLDLERCTRIHGGLVNL-KGL- 57
           + L+    L  L    +NA+   G      L    +L +L L        GL  L KGL 
Sbjct: 75  QGLTKGCGLQELD-LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133

Query: 58  ---MKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLT 110
                LE L +   N +  +  + L+       +LK L ++ + + D+GI  L       
Sbjct: 134 DLPPALEKL-VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA------ 186

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNE 166
                         + L A  +L  L+LN   L+D+G     E  + + SL+VLNLG N 
Sbjct: 187 --------------EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232

Query: 167 ITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNL 199
           +TD     L         +L +L+L    I D+G  +L
Sbjct: 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 71  ITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 127
           IT S++  L  +  + L+ L++    ++D  +  L    KL  L L G   +    L +L
Sbjct: 14  ITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIAL 73

Query: 128 -SALGSLFYLNLNRC-QLSDDG-------CEKFSKIGSLKVLNLGFNE----ITDECLVH 174
             +  +L  L+L  C  ++D G       C K      L+ +NLG +     ITD  L  
Sbjct: 74  AQSCPNLQVLDLRACENITDSGIVALATNCPK------LQTINLGRHRNGHLITDVSLSA 127

Query: 175 L-KGLTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELS 211
           L K  T L+++    C + D+G+  L   C  +L+ L L+
Sbjct: 128 LGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLN 167

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SC 92
            L  L+L  C      L  L    KL+ L +     I D  +  L     NL+ L + +C
Sbjct: 29  GLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRAC 88

Query: 93  SKVTDSGIAYLKG-LQKLTLLNL----EGCPVTAACLDSLSALGS----LFYLNLNRCQL 143
             +TDSGI  L     KL  +NL     G  +T     SLSALG     L  +    C +
Sbjct: 89  ENITDSGIVALATNCPKLQTINLGRHRNGHLITDV---SLSALGKNCTFLQTVGFAGCDV 145

Query: 144 SDDG 147
           +D G
Sbjct: 146 TDKG 149

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDA 260
           LK   L   +        L  L  L+ + L    + + + +     L    SLK L L  
Sbjct: 5   LKGELLKTERAT----ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL 60

Query: 261 RQ------ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC---GGGL 311
            +         + L  LT   GL  LDL    +   G   L +     SL+       GL
Sbjct: 61  NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120

Query: 312 TDAGVKHI----KDLS-SLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSRITS 362
            D G++ +    KDL  +L  L L +N  L   + E ++        L  LN++N+ I  
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGD 179

Query: 363 AGLRHLKP----LKNLRSLTLESCKVT 385
           AG+R L        NL  L L +  +T
Sbjct: 180 AGIRALAEGLKANCNLEVLDLNNNGLT 206

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.49
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.36
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.34
KOG4341	483	consensus F-box protein containing LRR [General fu	99.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
KOG4341	483	consensus F-box protein containing LRR [General fu	99.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.62
PLN03150	623	hypothetical protein; Provisional	98.62
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.55
PLN03150	623	hypothetical protein; Provisional	98.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.91
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.61
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.45
PRK15386	426	type III secretion protein GogB; Provisional	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
PRK15386	426	type III secretion protein GogB; Provisional	96.93
KOG4308	478	consensus LRR-containing protein [Function unknown	96.91
KOG4308	478	consensus LRR-containing protein [Function unknown	95.98
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.51
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.85
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.63
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.73
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.11
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.55
smart00370	26	LRR Leucine-rich repeats, outliers.	87.55
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.26
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.24

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-40  Score=330.60  Aligned_cols=392  Identities=22%  Similarity=0.232  Sum_probs=194.8

Q ss_pred             CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457            7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK   86 (406)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   86 (406)
                      .+++|++|++++|. +....+..+..+++|++|++++|......+..+.++++|++|++++|. +....+..+..+++|+
T Consensus       138 ~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        138 SIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLK  215 (968)
T ss_pred             ccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCcc
Confidence            34555555555554 223334445555555555555554333334445555555555555433 2222334444455555


Q ss_pred             EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc
Q 015457           87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  166 (406)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (406)
                      +|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            55555554444444444445555555555544444444444444445555444444443333444444444444444444


Q ss_pred             ------------------------cchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHh
Q 015457          167 ------------------------ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH  222 (406)
Q Consensus       167 ------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  222 (406)
                                              +.+..|..+..+++|+.|++.+|.+....+..+..+++|+.+++++|.+....+..
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence                                    44333444444444444444444443333333444444444444444433322233


Q ss_pred             hcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcC----
Q 015457          223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF----  298 (406)
Q Consensus       223 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----  298 (406)
                      +..+++|+.+++.+|.+....+..+..+++|+.|++++|.+++..+..+..++.|+.+++++|.+++..+..+..+    
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence            3333333444443333333333344445555555555555544333444444555555555544443333322233    


Q ss_pred             -------------------CCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457          299 -------------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  359 (406)
Q Consensus       299 -------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  359 (406)
                                         ++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.
T Consensus       456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCc
Confidence                               44555555555555555555666667777777776 5555566666677777777777777


Q ss_pred             cChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCCCcccc
Q 015457          360 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF  403 (406)
Q Consensus       360 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l  403 (406)
                      +++..+..+..+++|+.|++++|+++......+  ..++.|+.+
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~l  576 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL--GNVESLVQV  576 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhH--hcCcccCEE
Confidence            776666666777777777777777664333333  234444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-40  Score=329.73  Aligned_cols=356  Identities=19%  Similarity=0.187  Sum_probs=237.5

Q ss_pred             HHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCC
Q 015457           28 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ  107 (406)
Q Consensus        28 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  107 (406)
                      ..+.++++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+.+++
T Consensus       206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  284 (968)
T PLN00113        206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ  284 (968)
T ss_pred             hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc
Confidence            333444444444444443322333334445555555555432 2223344455556666666665555544455555666


Q ss_pred             CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457          108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  187 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  187 (406)
                      +|+.|++++|.+.+..|..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.++++
T Consensus       285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls  364 (968)
T PLN00113        285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS  364 (968)
T ss_pred             CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence            66666666666665556666666777777777776666566667777888888888887776677777777778888887


Q ss_pred             CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCC------------------------CCCcEEeccCCCCChhH
Q 015457          188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL------------------------TNLESINLSFTGISDGS  243 (406)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~------------------------~~L~~L~l~~~~~~~~~  243 (406)
                      +|.+....+..+..+++|+.+++.+|.+....+..++.+                        ++|+.+++++|.++...
T Consensus       365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  444 (968)
T PLN00113        365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI  444 (968)
T ss_pred             CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence            776654444444444555555555554444334444444                        44455555444444433


Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  323 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  323 (406)
                      +..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++
T Consensus       445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        445 NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence            3334445555556665555544322222 346788888888888877777888899999999999999988888899999


Q ss_pred             CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      +|+.|++++| .+....+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|++..
T Consensus       524 ~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        524 KLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CCCEEECCCC-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999 7888888899999999999999999998888888899999999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-38  Score=271.55  Aligned_cols=370  Identities=23%  Similarity=0.310  Sum_probs=318.4

Q ss_pred             CCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEE
Q 015457           10 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ   89 (406)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   89 (406)
                      .-+.|++++|. +..+.+..|..+++|+++++..|. ....|...+...+|+.|++.+ +.++....+.++.++.|+.|+
T Consensus        79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhh
Confidence            45679999887 677788889999999999998876 444455555566799999998 567777778888899999999


Q ss_pred             eccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch
Q 015457           90 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD  169 (406)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  169 (406)
                      ++.|.++......|..-.++++|++++|.++..-.+.|..+.+|..|.++.|.++......|.++++|+.|++..|.+..
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            99999887777777777889999999999988877888889999999999999998888889999999999999998864


Q ss_pred             hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhC
Q 015457          170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG  249 (406)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~  249 (406)
                      .-...|..+++|+.+.+..|.+......+|..+.+++++++..|.+......++-++..|+.|++++|.+.......+..
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            44567888999999999999988888888888999999999999988777777788899999999999998888888999


Q ss_pred             CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChH---HHHhhhcCCCCC
Q 015457          250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GVKHIKDLSSLT  326 (406)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~  326 (406)
                      +++|+.|+++.|.++......+..+..|++|+++.|.++......+..+++|++|++++|.+...   ....|..+++|+
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            99999999999999998888888889999999999999988888888999999999999876532   344577799999


Q ss_pred             EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCC
Q 015457          327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  384 (406)
Q Consensus       327 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~  384 (406)
                      .|.+.+| .+....-..+.++++|++|++.+|.|..+.+.+|..+ .|++|.+..-.+
T Consensus       396 kL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  396 KLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             heeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            9999999 8888888899999999999999999998889999888 888888876543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-35  Score=255.06  Aligned_cols=369  Identities=23%  Similarity=0.245  Sum_probs=314.0

Q ss_pred             eeccCCccCCHHHHHHHhcC--CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEec
Q 015457           14 LSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS   91 (406)
Q Consensus        14 L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   91 (406)
                      |+.++.. +..+....+.++  +.-+.|++++|..-...+..|.++++|+.+++..+ .++. .+.......+|+.|++.
T Consensus        57 ldcs~~~-lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~-IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   57 LDCSDRE-LEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTR-IPRFGHESGHLEKLDLR  133 (873)
T ss_pred             eecCccc-cccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhh-cccccccccceeEEeee
Confidence            3444433 333333444443  34456999998866666677899999999999874 3332 34445566789999999


Q ss_pred             cCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhH
Q 015457           92 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC  171 (406)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  171 (406)
                      +|.|+......++.++.|++||++.|.+.......+..-.++++|++++|.++....+.|..+.+|-.|.++.|.++...
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            99999888888999999999999999888765555666688999999999999888889999999999999999999777


Q ss_pred             HhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCC
Q 015457          172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS  251 (406)
Q Consensus       172 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~  251 (406)
                      +..|.++++|+.|++..|++.......|.++++|+.+.+..|.+.......|-.+.++++|++..|.+......++.+++
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence            78888899999999999988766677889999999999999998887777788899999999999999888888888999


Q ss_pred             CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEecc
Q 015457          252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  331 (406)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  331 (406)
                      .|+.|+++.|.+.......+.-+++|+.|++++|.++...+..+..+..|++|.+++|.+.......|..+.+|+.|+++
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            99999999999999888888889999999999999999889999999999999999999988877778889999999999


Q ss_pred             CCCCCChhHH---HHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          332 QNCNLTDKTL---ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       332 ~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      .| .+.+.+.   ..+.++++|+.|++.||++..+.-.+|.+++.|+.|++.+|.+-.
T Consensus       374 ~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  374 SN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             CC-eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence            99 6665433   456789999999999999999888999999999999999998765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=5.9e-29  Score=217.41  Aligned_cols=347  Identities=22%  Similarity=0.218  Sum_probs=216.8

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG   81 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   81 (406)
                      |.....+++++.|.+..+. + ...|+.++.+.+|+.|.+.+|... ..-..+..+|.|+++.+++++.-..-.+..+..
T Consensus        25 P~~v~qMt~~~WLkLnrt~-L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~  101 (1255)
T KOG0444|consen   25 PHDVEQMTQMTWLKLNRTK-L-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR  101 (1255)
T ss_pred             chhHHHhhheeEEEechhh-h-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence            5555667777777776664 2 334666777777777777776522 223346667777777777765555555666677


Q ss_pred             CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457           82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN  161 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  161 (406)
                      +..|+.|+++.|.+. +.+..+...+++-+|++++|.+..+....+..++.|-.|++++|++.. .|..+..+.+|++|.
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLK  179 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhh
Confidence            777777777777766 345566667777777777777776655556667777777777777653 444556667777777


Q ss_pred             ecCCccchhHHhhhcCCCCCCeEEccCCCCC-hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCC
Q 015457          162 LGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  240 (406)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  240 (406)
                      +++|++...-...+..+.+|+.|.+++.+-+ ...|..+..+.+|..++++.|.+... +..+.++++|+.|++++|.++
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCcee
Confidence            7777765433333445555666666655322 23444555666777777777666543 445556677777777777666


Q ss_pred             hhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChh-HHHHhhcCCCCCEEEccCCCCChHHHHhh
Q 015457          241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHI  319 (406)
Q Consensus       241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  319 (406)
                      +... ......+|++|+++.|+++.. +.++.++++|++|.+.+|+++-. .|+.++.+.+|+.+..++|.+.-. |+.+
T Consensus       259 eL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-PEgl  335 (1255)
T KOG0444|consen  259 ELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-PEGL  335 (1255)
T ss_pred             eeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-chhh
Confidence            5322 122345667777777776665 35556666777776666666532 344566666666666666655444 5566


Q ss_pred             hcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457          320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  359 (406)
Q Consensus       320 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  359 (406)
                      ..|+.|+.|.++.|. +. ..|+.+.-++.|+.||+..|+
T Consensus       336 cRC~kL~kL~L~~Nr-Li-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNR-LI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhHHHHHhcccccc-ee-echhhhhhcCCcceeeccCCc
Confidence            666777777666662 22 245555566666777776665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=3.1e-29  Score=219.11  Aligned_cols=366  Identities=22%  Similarity=0.228  Sum_probs=297.7

Q ss_pred             CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457            7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK   86 (406)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   86 (406)
                      =+|=+|-.++++|..-.+.-|..+..+..++-|.+.... ....|+.++.+++|++|.+.+++.++  ..+.++.+|.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhH
Confidence            355667788999885545667888999999999997644 55678889999999999999976544  446678899999


Q ss_pred             EEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457           87 SLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN  165 (406)
Q Consensus        87 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (406)
                      .+.+..|.+... .+..+..+..|..|++++|.+... |..+....++-.|++++|.+..+....|.++..|-.|++++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            999988876443 356678899999999999998775 888888999999999999998776667778899999999999


Q ss_pred             ccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc-hhHHhhcCCCCCcEEeccCCCCChhHH
Q 015457          166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSL  244 (406)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~  244 (406)
                      .+. ..|..++.+.+|+.|.+++|.+.......+..+.+|+.|.+++..-+- ..+..+..+.+|..++++.|.+.. .+
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vP  238 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VP  238 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-ch
Confidence            988 555557889999999999998765555556667788888888765322 234456677899999999998876 67


Q ss_pred             HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCC
Q 015457          245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLS  323 (406)
Q Consensus       245 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  323 (406)
                      +.+..+++|+.|++++|++++... ......+|++|++++|+++. .|.++..++.|+.|.+.+|.++-.+ |..++++.
T Consensus       239 ecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            788899999999999999988532 23345689999999999986 4777889999999999999866443 66788999


Q ss_pred             CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCC
Q 015457          324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  383 (406)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~  383 (406)
                      .|+.+...+|  .....|+.+++|..|+.|.++.|++.. .++++.-++.|+.|++..|+
T Consensus       317 ~Levf~aanN--~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  317 QLEVFHAANN--KLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhHHHHhhcc--ccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence            9999999998  455678999999999999999999655 56777788999999999996

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=8.6e-28  Score=199.03  Aligned_cols=375  Identities=21%  Similarity=0.219  Sum_probs=232.8

Q ss_pred             ccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcC------------
Q 015457            5 LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT------------   72 (406)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------   72 (406)
                      +.++..+.+|++.+++.  ...|+++.....++.++++++. ....++++...++++.++++.+...+            
T Consensus        64 l~nL~~l~vl~~~~n~l--~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~  140 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKL--SQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE  140 (565)
T ss_pred             hhcccceeEEEeccchh--hhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence            34455555666655542  1223444444455555555443 22334444444444444444432211            


Q ss_pred             ---------cCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccC
Q 015457           73 ---------DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL  143 (406)
Q Consensus        73 ---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  143 (406)
                               ...+..+.++.++..+++.++++...++..+. ++.|++++...|.+... |..++++.+|+.|++..|++
T Consensus       141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki  218 (565)
T KOG0472|consen  141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKI  218 (565)
T ss_pred             hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhccc
Confidence                     11334445556666666666666654444333 67777777777665553 66778888888888888887


Q ss_pred             ChhhhhhccCCCCccEEEecCCccchhHHh-hhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHh
Q 015457          144 SDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH  222 (406)
Q Consensus       144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  222 (406)
                      .. .| .|..+..|+.++++.|.+. ..|. ...+++++..|++.+|++.. .|..+..+.+|.+|++++|.++.. +..
T Consensus       219 ~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~L-p~s  293 (565)
T KOG0472|consen  219 RF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSL-PYS  293 (565)
T ss_pred             cc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccC-Ccc
Confidence            64 33 6777888888888888876 4444 44588899999999998854 455666788899999999988654 456


Q ss_pred             hcCCCCCcEEeccCCCCChhHH-----------HHhh------------------------------CCCCCcEEECCCC
Q 015457          223 LSGLTNLESINLSFTGISDGSL-----------RKLA------------------------------GLSSLKSLNLDAR  261 (406)
Q Consensus       223 l~~~~~L~~L~l~~~~~~~~~~-----------~~l~------------------------------~~~~L~~L~l~~~  261 (406)
                      ++++ +|+.|.+.+|.+...-.           ..+.                              ..-+.+.|.+++-
T Consensus       294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~  372 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK  372 (565)
T ss_pred             cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence            7777 88888887775421100           0000                              0113444555554


Q ss_pred             CCChHHHHHHhc--CCCCCEEEccCCCCChh-----------------------HHHHhhcCCCCCEEEccCCCCChHHH
Q 015457          262 QITDTGLAALTS--LTGLTHLDLFGARITDS-----------------------GAAYLRNFKNLRSLEICGGGLTDAGV  316 (406)
Q Consensus       262 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~~L~~L~l~~~~~~~~~~  316 (406)
                      +++..+.+.|..  -.-...+++++|++.+.                       .+..+..+++|..|++++|.+.+. |
T Consensus       373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P  451 (565)
T KOG0472|consen  373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-P  451 (565)
T ss_pred             ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-c
Confidence            454443333321  12245556666554432                       123345677888888888766655 5


Q ss_pred             HhhhcCCCCCEEeccCCC----------------------CCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCc
Q 015457          317 KHIKDLSSLTLLNLSQNC----------------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL  374 (406)
Q Consensus       317 ~~~~~~~~L~~L~l~~~~----------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  374 (406)
                      ..++.+..|+.|+++.|.                      .+....++.+.++++|..||+.+|.+..+ |..+++|.+|
T Consensus       452 ~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL  530 (565)
T KOG0472|consen  452 EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNL  530 (565)
T ss_pred             hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-Chhhccccce
Confidence            556667778888887773                      23333445678899999999999998764 4467999999


Q ss_pred             cEEEccCCCCChhhHHHH
Q 015457          375 RSLTLESCKVTANDIKRL  392 (406)
Q Consensus       375 ~~l~l~~~~~~~~~~~~~  392 (406)
                      +.++++||++..+.-+-+
T Consensus       531 ~hLeL~gNpfr~Pr~~iL  548 (565)
T KOG0472|consen  531 RHLELDGNPFRQPRHQIL  548 (565)
T ss_pred             eEEEecCCccCCCHHHHh
Confidence            999999999987765544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=1.5e-25  Score=185.93  Aligned_cols=347  Identities=23%  Similarity=0.255  Sum_probs=212.3

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG   81 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   81 (406)
                      |.+++.+.++..+++.++. +...++..+. ++.|+.|+..++. ....|+.++.+.+|+.|+++.+. +..  ...|..
T Consensus       153 p~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk-i~~--lPef~g  226 (565)
T KOG0472|consen  153 PEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK-IRF--LPEFPG  226 (565)
T ss_pred             chHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc-ccc--CCCCCc
Confidence            4455555555666666554 2333334444 6666666665554 33455566677777777777643 332  225666


Q ss_pred             CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457           82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN  161 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  161 (406)
                      |..|+++.+..|.+...+....++++++.+||+.+|++... |+.+..+.+|++|++++|.++. .|..++++ +|+.|.
T Consensus       227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLA  303 (565)
T ss_pred             cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehh
Confidence            77777777777776654445556777777777777777664 6677777777778877777764 45566666 777777


Q ss_pred             ecCCccchhHHhhhcCCC--CCCeEE-------ccCCCCC--------hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhc
Q 015457          162 LGFNEITDECLVHLKGLT--NLESLN-------LDSCGIG--------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS  224 (406)
Q Consensus       162 l~~~~~~~~~~~~~~~~~--~L~~L~-------l~~~~~~--------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~  224 (406)
                      +.+|++...--+.+...+  -|++|.       ++..+-.        ...........+.+.|+++.-.++..+...|.
T Consensus       304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe  383 (565)
T KOG0472|consen  304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE  383 (565)
T ss_pred             hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence            777765421111111000  011110       0000000        00001111223455555555554444333332


Q ss_pred             CC--CCCcEEeccCCCC-----------------------ChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCE
Q 015457          225 GL--TNLESINLSFTGI-----------------------SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH  279 (406)
Q Consensus       225 ~~--~~L~~L~l~~~~~-----------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  279 (406)
                      ..  .-++.++++.|.+                       .+..+..++.+++|..|++++|.+...+ ..++.+..|+.
T Consensus       384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP-~e~~~lv~Lq~  462 (565)
T KOG0472|consen  384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP-EEMGSLVRLQT  462 (565)
T ss_pred             HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc-hhhhhhhhhhe
Confidence            11  1233344443322                       2234455677889999999998887764 44455677999


Q ss_pred             EEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457          280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  359 (406)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  359 (406)
                      ++++.|++.. .|.++.....++.+-.++|++....+..+..+.+|++|++.+| .+ ..+|..++++.+|++|+++||+
T Consensus       463 LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dl-q~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  463 LNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DL-QQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             eccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-ch-hhCChhhccccceeEEEecCCc
Confidence            9999998865 3555555666777777889998887777889999999999998 34 4567788999999999999999


Q ss_pred             cC
Q 015457          360 IT  361 (406)
Q Consensus       360 ~~  361 (406)
                      |.
T Consensus       540 fr  541 (565)
T KOG0472|consen  540 FR  541 (565)
T ss_pred             cC
Confidence            87

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.88  E-value=8.3e-25  Score=199.25  Aligned_cols=370  Identities=21%  Similarity=0.236  Sum_probs=250.2

Q ss_pred             CcccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCcccccc
Q 015457            1 MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS   80 (406)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   80 (406)
                      +|..++.+++|+.|+++.+.. .+ .+....++.+|+++.|.++. ....|..+..+.+|+.|+++.+....  .+..+.
T Consensus        60 fp~~it~l~~L~~ln~s~n~i-~~-vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~  134 (1081)
T KOG0618|consen   60 FPIQITLLSHLRQLNLSRNYI-RS-VPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGP--IPLVIE  134 (1081)
T ss_pred             CCchhhhHHHHhhcccchhhH-hh-Cchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCC--CchhHH
Confidence            366778888999999998863 33 34667788999999998876 55567778888899999998864432  112222


Q ss_pred             CCCC-------------------ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHh-------------
Q 015457           81 GLTN-------------------LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-------------  128 (406)
Q Consensus        81 ~~~~-------------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------  128 (406)
                      .+..                   ++.+++..+.+.+.....+..+.+  .|++.+|.+.......+.             
T Consensus       135 ~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls  212 (1081)
T KOG0618|consen  135 VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLS  212 (1081)
T ss_pred             hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccc
Confidence            2222                   333333333333333333333333  367776655421111111             


Q ss_pred             ----cCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCC
Q 015457          129 ----ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN  204 (406)
Q Consensus       129 ----~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  204 (406)
                          .-++++.++...|.+.....  -....++++++++++.+. ..|+++..+.+|+.+....|.++ ..+..+....+
T Consensus       213 ~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~  288 (1081)
T KOG0618|consen  213 ELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS  288 (1081)
T ss_pred             eEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh
Confidence                12444455555554442111  112357889999998887 55688888899999999888774 33445556667


Q ss_pred             CCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhh-------------------------CCCCCcEEECC
Q 015457          205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-------------------------GLSSLKSLNLD  259 (406)
Q Consensus       205 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-------------------------~~~~L~~L~l~  259 (406)
                      |+.+.+..|.+... +.......+|++|++..|.+.......+.                         ..+.|+.|.+.
T Consensus       289 L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  289 LVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            77777777776543 34455567777777777765432211110                         12457777888


Q ss_pred             CCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChh
Q 015457          260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  339 (406)
Q Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  339 (406)
                      +|.+++.....+..+++|+.|++++|++...+...+.+++.|++|+++||.++.. +..+..++.|++|...+| .+...
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN-~l~~f  445 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSN-QLLSF  445 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCC-ceeec
Confidence            8888887777888889999999999999888888889999999999999999887 577888999999998888 45443


Q ss_pred             HHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       340 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      +  .+..++.|+.+|++.|.++..........++|++|+++||....
T Consensus       446 P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  446 P--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             h--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            3  67788999999999999988776665566899999999998543

>PLN03210 Resistant to P

Probab=99.88  E-value=7.6e-22  Score=198.08  Aligned_cols=308  Identities=21%  Similarity=0.176  Sum_probs=147.8

Q ss_pred             CCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEe
Q 015457           35 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  114 (406)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (406)
                      +|+.|.+.++. ....|..+ ...+|+.|++.++. +.. .+..+..+++|+.|+++++...... +.+..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEK-LWDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccc-cccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEe
Confidence            35555555543 22222222 24555666665532 221 2233445566666666544311111 12445556666666


Q ss_pred             cCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChh
Q 015457          115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE  194 (406)
Q Consensus       115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  194 (406)
                      ++|......|..+..+++|+.|++.+|......|..+ .+++|+.|++++|.....+|.   ...+|+.|++.++.+...
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l  740 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF  740 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc
Confidence            6554434445555556666666666554322233222 455566666655543322222   124555666655554322


Q ss_pred             hhHhhhCCCCCCEEEcCCCcCCc-------hhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457          195 GLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  267 (406)
Q Consensus       195 ~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (406)
                       +..+ .+++|+.|.+.++....       ........+++|+.|++++|......+..++++++|+.|++++|......
T Consensus       741 -P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        741 -PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             -cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence             1111 34455555554422110       00111122356666666665444444555666666666666665322211


Q ss_pred             HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457          268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  347 (406)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  347 (406)
                      +... .+++|+.|++++|......+.   ..++|+.|++++|.+... |..+..+++|+.|++++|.++.. .+.....+
T Consensus       819 P~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L  892 (1153)
T PLN03210        819 PTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKL  892 (1153)
T ss_pred             CCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccc
Confidence            1111 456666666666543322211   134566666666666544 44556666666666666654443 23334455


Q ss_pred             CCccEEEeeCCc
Q 015457          348 TGLVSLNVSNSR  359 (406)
Q Consensus       348 ~~L~~L~l~~~~  359 (406)
                      ++|+.+++++|.
T Consensus       893 ~~L~~L~l~~C~  904 (1153)
T PLN03210        893 KHLETVDFSDCG  904 (1153)
T ss_pred             cCCCeeecCCCc
Confidence            666666666664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=3.5e-21  Score=193.37  Aligned_cols=341  Identities=20%  Similarity=0.142  Sum_probs=241.7

Q ss_pred             HHHHHhcCCCCcEeeccCccc------ccCccccccCCC-CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChh
Q 015457           26 GMKAFAGLINLVKLDLERCTR------IHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS   98 (406)
Q Consensus        26 ~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   98 (406)
                      ....|.++++|+.|.+.+...      ....+..+..++ +|+.|++.+++. .. .+..+ ...+|+.|++.++.+.. 
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~-lP~~f-~~~~L~~L~L~~s~l~~-  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RC-MPSNF-RPENLVKLQMQGSKLEK-  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CC-CCCcC-CccCCcEEECcCccccc-
Confidence            356789999999999975421      111233444544 699999988643 22 22233 56899999999988764 


Q ss_pred             HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCC
Q 015457           99 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL  178 (406)
Q Consensus        99 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  178 (406)
                      .+..+..+++|+.|+++++......| .+..+++|++|++.+|......|..+..+++|+.|++++|.....+|..+ .+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            34556789999999999875444444 47788999999999987666677888899999999999875444556544 68


Q ss_pred             CCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh-------hHHHHhhCCC
Q 015457          179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-------GSLRKLAGLS  251 (406)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~  251 (406)
                      ++|+.|++++|......+.   ...+|+.|++.++.+...+ .. ..+++|+.|.+.++....       ..+.....++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP-~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP-SN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc-cc-ccccccccccccccchhhccccccccchhhhhccc
Confidence            8999999999854333222   2467899999998875432 22 246788888876642211       1111223457


Q ss_pred             CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEecc
Q 015457          252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  331 (406)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  331 (406)
                      +|+.|++++|......+..+..+++|+.|++++|......|..+ .+++|++|++++|......+.   ..++|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence            89999999987665556678899999999999986544334333 688999999999864433222   24689999999


Q ss_pred             CCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCC
Q 015457          332 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  383 (406)
Q Consensus       332 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~  383 (406)
                      +| .+.. .+..+..+++|+.|++++|+-....+..+..+++|+.+++++|.
T Consensus       855 ~n-~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RT-GIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CC-CCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            98 5654 56678899999999999987333344455678899999999995

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=2.5e-24  Score=196.18  Aligned_cols=380  Identities=22%  Similarity=0.235  Sum_probs=272.6

Q ss_pred             cCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCc
Q 015457            6 SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL   85 (406)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   85 (406)
                      .++-+|++|+++++..  +.-|..+..+++|+.|+++.+. +...+....++.+|+++.+.++..  ...+..+..+.+|
T Consensus        42 ~~~v~L~~l~lsnn~~--~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl  116 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQI--SSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNL  116 (1081)
T ss_pred             hheeeeEEeecccccc--ccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcc
Confidence            4455699999999874  2335667889999999999876 445567788999999999987532  3356778889999


Q ss_pred             cEEEeccCccChhHHHhhhcCC-------------------CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChh
Q 015457           86 KSLQISCSKVTDSGIAYLKGLQ-------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD  146 (406)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~l~-------------------~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  146 (406)
                      ++|++++|.+...+. .+..+.                   .++.+++..+.+....+..+..+..  .+++..|.+...
T Consensus       117 ~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~  193 (1081)
T KOG0618|consen  117 QYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL  193 (1081)
T ss_pred             cccccchhccCCCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence            999999998764332 121111                   2445555555555555555555544  588888776522


Q ss_pred             hhhhcc-----------------CCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEE
Q 015457          147 GCEKFS-----------------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE  209 (406)
Q Consensus       147 ~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  209 (406)
                      ....+.                 ..++++.|+..+|.+....+  .....+|++++++.+.+.... ..+..+.+|..++
T Consensus       194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~  270 (1081)
T KOG0618|consen  194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALN  270 (1081)
T ss_pred             hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcch-HHHHhcccceEec
Confidence            221111                 11456666666666652211  123468999999999886554 8889999999999


Q ss_pred             cCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh-----------------
Q 015457          210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-----------------  272 (406)
Q Consensus       210 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----------------  272 (406)
                      ..+|.+... +..+....+|+.+.+..|.+.. .+......+.|++|++..|++...+...+.                 
T Consensus       271 ~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~  348 (1081)
T KOG0618|consen  271 ANHNRLVAL-PLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS  348 (1081)
T ss_pred             ccchhHHhh-HHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence            999998543 5566677889999998888766 344456689999999999987764332211                 


Q ss_pred             --------cCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHH
Q 015457          273 --------SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  344 (406)
Q Consensus       273 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  344 (406)
                              .++.|+.|.+.+|.+++.....+..+++|+.|++++|.+.......+.+++.|+.|++++| +++.. +..+
T Consensus       349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~L-p~tv  426 (1081)
T KOG0618|consen  349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTL-PDTV  426 (1081)
T ss_pred             ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhh-hHHH
Confidence                    1234666777788888776777788889999999998888776777788888999999998 66654 4777


Q ss_pred             HcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457          345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  404 (406)
Q Consensus       345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~  404 (406)
                      ..++.|+.|...+|.+...+  .+...+.|+.++++.|.++.-.+...  ..+|+|+.|.
T Consensus       427 a~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLd  482 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLD  482 (1081)
T ss_pred             HhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhh--CCCcccceee
Confidence            78888999988888887644  66788999999999999998666554  3568888765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.85  E-value=2.1e-19  Score=157.78  Aligned_cols=277  Identities=27%  Similarity=0.341  Sum_probs=133.2

Q ss_pred             EEeccCccC-hhHHHhhhcCCCCCEEEecCCCCChh----hHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           88 LQISCSKVT-DSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        88 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      |++.++.++ ......+..++.|+.++++++.++..    .+..+...+.++++++.++.+... +              
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~--------------   67 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P--------------   67 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c--------------
Confidence            444444444 22233445555566666666655432    122233344555555555443310 0              


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCC---CCCEEEcCCCcCCchhH----HhhcCC-CCCcEEec
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC---NLKCLELSDTQVGSSGL----RHLSGL-TNLESINL  234 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~l~l~~~~~~~~~~----~~l~~~-~~L~~L~l  234 (406)
                         ......+..+..+++|++|+++++.+....+..+..+.   +|+.|+++++.+.....    ..+..+ ++|+.+++
T Consensus        68 ---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L  144 (319)
T cd00116          68 ---RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL  144 (319)
T ss_pred             ---hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence               00012233344455555555555554432222222222   25555555555442111    222333 56666666


Q ss_pred             cCCCCChh----HHHHhhCCCCCcEEECCCCCCChHHH----HHHhcCCCCCEEEccCCCCChhHH----HHhhcCCCCC
Q 015457          235 SFTGISDG----SLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLR  302 (406)
Q Consensus       235 ~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~  302 (406)
                      ++|.++..    ....+..+++|++|++++|.+.+...    ..+..+++|+.|++++|.+++...    ..+..+++|+
T Consensus       145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~  224 (319)
T cd00116         145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE  224 (319)
T ss_pred             CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence            66665522    22234445566666666666654322    223344566666666666654332    2234456666


Q ss_pred             EEEccCCCCChHHHHhhhc-----CCCCCEEeccCCCCCChh----HHHHHHcCCCccEEEeeCCccChhHH----HhcC
Q 015457          303 SLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGL----RHLK  369 (406)
Q Consensus       303 ~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~  369 (406)
                      +|++++|.+.+.....+..     .+.|+.|++++| .+.+.    ....+..+++|+.+++++|.+++...    ..+.
T Consensus       225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~  303 (319)
T cd00116         225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL  303 (319)
T ss_pred             EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence            6666666666543333321     256666666666 44422    22333445566666666666664422    2233


Q ss_pred             CC-CCccEEEccCCC
Q 015457          370 PL-KNLRSLTLESCK  383 (406)
Q Consensus       370 ~~-~~L~~l~l~~~~  383 (406)
                      .. +.|+++++.+++
T Consensus       304 ~~~~~~~~~~~~~~~  318 (319)
T cd00116         304 EPGNELESLWVKDDS  318 (319)
T ss_pred             hcCCchhhcccCCCC
Confidence            33 456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.84  E-value=1.1e-18  Score=153.19  Aligned_cols=278  Identities=27%  Similarity=0.304  Sum_probs=158.0

Q ss_pred             EEeecCCCCcCcCccccccCCCCccEEEeccCccChhHH----HhhhcCCCCCEEEecCCCCCh------hhHHHHhcCC
Q 015457           62 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGCPVTA------ACLDSLSALG  131 (406)
Q Consensus        62 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~  131 (406)
                      .|++..+..-.......+..+++|++|.+.++.+++...    ..+...+.++.++++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            355654333223334455677889999999999865433    345677889999999887662      2234455677


Q ss_pred             CCcEEEcCCccCChhhhhhccCC---CCccEEEecCCccch----hHHhhhcCC-CCCCeEEccCCCCChhhhHhhhCCC
Q 015457          132 SLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFNEITD----ECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLC  203 (406)
Q Consensus       132 ~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~  203 (406)
                      +|++++++++.+....+..+..+   ++|+.|++++|.+..    .....+..+ ++|+.+++++|.++......     
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-----  156 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA-----  156 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH-----
Confidence            88888887777654333333333   236666666665542    112223333 55555555555544211111     


Q ss_pred             CCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH----HHHhhCCCCCcEEECCCCCCChHHH----HHHhcCC
Q 015457          204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGL----AALTSLT  275 (406)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~  275 (406)
                                     ....+..+++|+.|++++|.+++..    ...+...++|+.|++++|.+++...    ..+..++
T Consensus       157 ---------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         157 ---------------LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             ---------------HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence                           1122334455666666655555322    1223344566666666666654332    2334566


Q ss_pred             CCCEEEccCCCCChhHHHHhh-c----CCCCCEEEccCCCCChHHH----HhhhcCCCCCEEeccCCCCCChhHH----H
Q 015457          276 GLTHLDLFGARITDSGAAYLR-N----FKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTL----E  342 (406)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~~~-~----~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~  342 (406)
                      +|++|++++|.+++.....+. .    .+.|++|++++|.+++...    ..+..+++|+.+++++| .+.....    .
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~  300 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAE  300 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHH
Confidence            677777777776653333322 1    3677777777777763322    23445677888888888 6665533    3


Q ss_pred             HHHcC-CCccEEEeeCCcc
Q 015457          343 LISGL-TGLVSLNVSNSRI  360 (406)
Q Consensus       343 ~l~~~-~~L~~L~l~~~~~  360 (406)
                      .+... +.++.+++.++++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         301 SLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHhhcCCchhhcccCCCCC
Confidence            33344 6788888877753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=4.9e-21  Score=158.89  Aligned_cols=132  Identities=23%  Similarity=0.251  Sum_probs=95.0

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCC-ccCChhhhhhccCCCCccEEE
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLN  161 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~  161 (406)
                      +.-+.+.+..|.|+..++..|+.+++|+.|++++|.++.+.|+.|.++.++..+.+.+ |++++...+.|..+..++.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4556677777877777777788888888888888888777788888777777666655 777776667777777777777


Q ss_pred             ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc
Q 015457          162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  214 (406)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  214 (406)
                      +..+.+.....+.+..++++..|.+.+|.+.......+..+..++.+.+..+.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            77777776667777777777777777776654444455556666666655544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=6.8e-20  Score=152.17  Aligned_cols=276  Identities=22%  Similarity=0.245  Sum_probs=184.2

Q ss_pred             CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC-CccchhHHhhhcCCCCCCeEEc
Q 015457          108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL  186 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l  186 (406)
                      .-..|++..|.++...+..|..+++|+.++++.|.+..+.++.|..++++-.|-+.+ |.++......|..+..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            455678888888888777888888888888888888888888888887777766655 6777555566777777777777


Q ss_pred             cCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCC-h-----------hHHHHhhCCCCCc
Q 015457          187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-D-----------GSLRKLAGLSSLK  254 (406)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~-----------~~~~~l~~~~~L~  254 (406)
                      .-+++.......+..++++..|.+.++.+.......+..+..++.+.+..+.+. +           ..+.+++.+.-..
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            777776666777777888888888777765554445555666666655444311 0           0111111111111


Q ss_pred             EEECCCCCCChHHHHHHhcCCCCCEE--Ec-cCC-CCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEec
Q 015457          255 SLNLDARQITDTGLAALTSLTGLTHL--DL-FGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  330 (406)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~~~~L~~L--~l-~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  330 (406)
                      ...+....+.......+..  .++.+  .+ +.+ .....+...|..+++|++|++++|.++.....+|.....++.|.+
T Consensus       228 p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             hHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            1111111111111111110  01111  11 122 222334556788899999999999888888888888888999999


Q ss_pred             cCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       331 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ..| ++.......+.++..|+.|++.+|+|+-..+.+|....+|.+|++-.|++..
T Consensus       306 ~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  306 TRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             Ccc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence            888 7777777888888889999999999888888888888889999988888665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=3.3e-16  Score=147.14  Aligned_cols=242  Identities=21%  Similarity=0.120  Sum_probs=105.8

Q ss_pred             CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457          108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  187 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  187 (406)
                      +|+.|++.+|.++.. |.   ..++|++|++++|.+... +.   ..++|+.|++++|.+. .+|..   .++|+.|++.
T Consensus       223 ~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            455555555544442 21   234555555555544432 11   1234555555555443 22221   1344555555


Q ss_pred             CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457          188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  267 (406)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (406)
                      +|.+.....    ..++|+.|++++|.+.....    ...+|+.|++++|.++.. +.   ..++|+.|++++|.++..+
T Consensus       291 ~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~LP  358 (788)
T PRK15387        291 GNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLASLP  358 (788)
T ss_pred             CCccccccc----cccccceeECCCCccccCCC----CcccccccccccCccccc-cc---cccccceEecCCCccCCCC
Confidence            554432211    12445555555554443211    112344555555544431 10   1134555555555555432


Q ss_pred             HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457          268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  347 (406)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  347 (406)
                      .    ..++|+.|++++|.+...+ .   ...+|+.|++++|.+... +.   ..++|+.|++++| .+...+ ..   .
T Consensus       359 ~----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~L-P~---l~s~L~~LdLS~N-~LssIP-~l---~  421 (788)
T PRK15387        359 T----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV---LPSELKELMVSGN-RLTSLP-ML---P  421 (788)
T ss_pred             C----CCcccceehhhccccccCc-c---cccccceEEecCCcccCC-CC---cccCCCEEEccCC-cCCCCC-cc---h
Confidence            1    1234555555555554321 1   123455555555555432 11   1245555555555 333321 11   1


Q ss_pred             CCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHH
Q 015457          348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR  391 (406)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~  391 (406)
                      .+|+.|++++|+++. .+..+..+++|+.+++++|+++......
T Consensus       422 ~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        422 SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHH
Confidence            244555555555553 2333445555555566665555544433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.67  E-value=4.5e-16  Score=146.28  Aligned_cols=243  Identities=20%  Similarity=0.123  Sum_probs=129.1

Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      +|+.|.+.+|.++..+.    ..++|++|++++|.++.. |.   ..++|+.|++.+|.+... +.   ..++|+.|+++
T Consensus       223 ~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~~L-p~---lp~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchhhh-hh---chhhcCEEECc
Confidence            55666666555553221    235566666666655543 21   134566666666555432 11   12345566666


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  243 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  243 (406)
                      +|.+. .+|.   .+++|+.|++++|.+.....    ....|+.|++.+|.+...+ .   ...+|+.|++++|.++...
T Consensus       291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~LP  358 (788)
T PRK15387        291 GNQLT-SLPV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLASLP  358 (788)
T ss_pred             CCccc-cccc---cccccceeECCCCccccCCC----CcccccccccccCcccccc-c---cccccceEecCCCccCCCC
Confidence            66555 2232   23456666666665543211    1234555666666554321 1   1135666666666665421


Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  323 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  323 (406)
                       .   ..++|+.|++++|.+...+.    ...+|+.|++++|.++..+.    ..++|+.|++++|.+... +..   +.
T Consensus       359 -~---lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssI-P~l---~~  422 (788)
T PRK15387        359 -T---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSL-PML---PS  422 (788)
T ss_pred             -C---CCcccceehhhccccccCcc----cccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCC-Ccc---hh
Confidence             1   13456666666666664321    12456777777776664221    135677777777776653 221   23


Q ss_pred             CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhc
Q 015457          324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL  368 (406)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  368 (406)
                      +|+.|++++| .+.. .+..+..+++|+.|++++|++++..+..+
T Consensus       423 ~L~~L~Ls~N-qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        423 GLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhccC-cccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            5666777776 4553 45556677777777777777776555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.60  E-value=1.4e-14  Score=119.06  Aligned_cols=192  Identities=23%  Similarity=0.304  Sum_probs=123.5

Q ss_pred             CCCCCCEEEcCCCcCCchhHHh----hcCCCCCcEEeccCCCCChhHHHH-------------hhCCCCCcEEECCCCCC
Q 015457          201 GLCNLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDARQI  263 (406)
Q Consensus       201 ~~~~L~~l~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~  263 (406)
                      .++.|+.+++++|.++...+..    +..+..|++|.+.+|++.......             .+..+.|+.+.+..|.+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            3445555555555554433322    234555666666555554332222             23457788888888777


Q ss_pred             ChHHH----HHHhcCCCCCEEEccCCCCChhH----HHHhhcCCCCCEEEccCCCCChHHHH----hhhcCCCCCEEecc
Q 015457          264 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLS  331 (406)
Q Consensus       264 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~  331 (406)
                      ...+.    ..+...+.|+.+.+..|.+...+    ...+.++++|+.|++.+|.++..+..    .++.+|+|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            65433    34556678888888888776433    34467788888888888887765543    34567888999999


Q ss_pred             CCCCCChhHHHHHH-----cCCCccEEEeeCCccChhHHHh----cCCCCCccEEEccCCCC--ChhhHHHHh
Q 015457          332 QNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKV--TANDIKRLQ  393 (406)
Q Consensus       332 ~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~l~l~~~~~--~~~~~~~~~  393 (406)
                      +| .+.......+.     ..|+|+++.+.+|.++......    +...|.|+.|++++|++  ....+..+.
T Consensus       250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~  321 (382)
T KOG1909|consen  250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA  321 (382)
T ss_pred             cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence            98 77765544332     4688999999999887544433    34578899999999998  444455443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=6.1e-15  Score=139.50  Aligned_cols=254  Identities=19%  Similarity=0.192  Sum_probs=158.6

Q ss_pred             CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457          108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  187 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  187 (406)
                      +...|++++..++.. |..+  .++++.|++++|.+... +..+.  ++|+.|++++|.+. .+|..+.  ++|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            456777777766654 4333  24677888888777643 33222  47888888887776 3344332  467888888


Q ss_pred             CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457          188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  267 (406)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (406)
                      +|.+... +..+  ..+|+.|++++|.+... +..+  +++|+.|++++|.++.. +..+  .++|+.|++++|.++..+
T Consensus       250 ~N~L~~L-P~~l--~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        250 INRITEL-PERL--PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTALP  320 (754)
T ss_pred             CCccCcC-ChhH--hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccccCC
Confidence            8776533 2222  24678888887776643 2222  25788888888877653 2212  246777788887777543


Q ss_pred             HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457          268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  347 (406)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  347 (406)
                      .. +  .++|+.|++++|.++..+ ..+  +++|+.|++++|.+... +..+  .++|+.|++++| .+...+. .+.  
T Consensus       321 ~~-l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N-~Lt~LP~-~l~--  387 (754)
T PRK15370        321 ET-L--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRN-ALTNLPE-NLP--  387 (754)
T ss_pred             cc-c--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCC-cCCCCCH-hHH--
Confidence            21 1  257888888888776532 222  36788888888877654 3333  367888888888 5654332 332  


Q ss_pred             CCccEEEeeCCccChhH---HHhcCCCCCccEEEccCCCCChhhHHHH
Q 015457          348 TGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTANDIKRL  392 (406)
Q Consensus       348 ~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~l~l~~~~~~~~~~~~~  392 (406)
                      ..|+.|++++|++...+   +......+++..+++.+|+++...+..+
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L  435 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM  435 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence            35778888888876432   2223445778888888888887666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.57  E-value=9.1e-15  Score=138.31  Aligned_cols=251  Identities=22%  Similarity=0.245  Sum_probs=137.8

Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      +...|.+++..++..+ ..+  .+.++.|++++|.+... |..+.  ++|++|++++|.+... +..+.  ++|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccccC-Chhhh--ccccEEECc
Confidence            4455666655554322 112  13566666666666653 33222  4666777766665532 22221  356667777


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  243 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  243 (406)
                      +|.+. .+|..+.  .+|+.|++++|.+... +..+  .++|+.|++++|.+..... .+  .++|+.|++++|.++.. 
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~L-  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLTAL-  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccccC-
Confidence            66665 3343332  3567777776665432 2222  2367777777766554321 11  13566677777766542 


Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  323 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  323 (406)
                      +..+  .++|+.|.+++|.++..+ ..+  .++|+.|++++|.++.. +..+  .++|+.|++++|.+... +..+.  +
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~  388 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNL-PENLP--A  388 (754)
T ss_pred             Cccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCC-CHhHH--H
Confidence            1111  256777777777766543 222  25777777777777643 2222  35777777777777654 33332  3


Q ss_pred             CCCEEeccCCCCCChh---HHHHHHcCCCccEEEeeCCccChhHH
Q 015457          324 SLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITSAGL  365 (406)
Q Consensus       324 ~L~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~  365 (406)
                      .|+.|++++| .+...   .+.....++++..+++.+|++.....
T Consensus       389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl  432 (754)
T PRK15370        389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTI  432 (754)
T ss_pred             HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccHHHH
Confidence            5777777777 44432   22233345677778888887765333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.49  E-value=4.9e-13  Score=110.21  Aligned_cols=133  Identities=23%  Similarity=0.304  Sum_probs=62.7

Q ss_pred             CCCcEEeccCCCCChhHH----HHhhCCCCCcEEECCCCCCChHH----HHHHhcCCCCCEEEccCCCCChhHHH----H
Q 015457          227 TNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITDSGAA----Y  294 (406)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~  294 (406)
                      +.|+.+....|.+.+...    ..+...+.|+.++++.|.+...+    ...+..+++|+.|++.+|.++..+..    .
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            445555555444333211    22233455555555555443322    13344555555555555555543322    2


Q ss_pred             hhcCCCCCEEEccCCCCChHHHHhhh-----cCCCCCEEeccCCCCCChhHHH----HHHcCCCccEEEeeCCcc
Q 015457          295 LRNFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRI  360 (406)
Q Consensus       295 ~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~  360 (406)
                      +..+++|+.|++.+|.+...+...+.     ..|+|+.+.+.+| .++.....    .+...|.|+.|++++|.+
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            33445555555555555544443331     2456666666665 33332221    122345566666666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.36  E-value=4.1e-15  Score=109.86  Aligned_cols=156  Identities=18%  Similarity=0.177  Sum_probs=93.7

Q ss_pred             cCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCE
Q 015457           32 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL  111 (406)
Q Consensus        32 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  111 (406)
                      .+.++.+|.++++.. ...++.++.+.+|+.|++.+++. + ..+..++.+++|+.|++.-|.+. ..+..|+.+|.|++
T Consensus        31 ~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqi-e-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQI-E-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchh-h-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            345566666666653 33444566666777777665432 2 24455666677777766655544 34455666677777


Q ss_pred             EEecCCCCCh-hhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCC
Q 015457          112 LNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG  190 (406)
Q Consensus       112 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  190 (406)
                      |+++++.+.. ..|+.|..+..|+.|++.+|.+. ..|..++++++|+.|.+..|.+. ..|..++.+..|+.|.+.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            7776665543 34555666666666666666654 34555666666666666666655 455556666666666666666


Q ss_pred             CCh
Q 015457          191 IGD  193 (406)
Q Consensus       191 ~~~  193 (406)
                      ++.
T Consensus       185 l~v  187 (264)
T KOG0617|consen  185 LTV  187 (264)
T ss_pred             eee
Confidence            543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.34  E-value=6.5e-15  Score=108.83  Aligned_cols=156  Identities=24%  Similarity=0.279  Sum_probs=85.8

Q ss_pred             CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457           81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  160 (406)
Q Consensus        81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  160 (406)
                      .+.+++.|.+++|+++. .+..++.+.+|+.|++.++.+... |..++.+++|+.|++.-|++. ..|..|+.+|.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            44555666666666653 334456666666666666666554 555666666666666665543 345566666666666


Q ss_pred             EecCCccch-hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCC
Q 015457          161 NLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI  239 (406)
Q Consensus       161 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  239 (406)
                      ++.+|++.+ ..|..|-.+..|+.|.+++|.+. ..+..++++.+|+.|.+.++.+-. .+..++.+..|+.|.+.+|.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccccee
Confidence            666665543 23333444455555555555442 334445555555555555555432 234444445555555555544


Q ss_pred             Ch
Q 015457          240 SD  241 (406)
Q Consensus       240 ~~  241 (406)
                      +.
T Consensus       186 ~v  187 (264)
T KOG0617|consen  186 TV  187 (264)
T ss_pred             ee
Confidence            43

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.32  E-value=3.7e-12  Score=107.58  Aligned_cols=301  Identities=27%  Similarity=0.402  Sum_probs=140.3

Q ss_pred             CccEEeecCCCCcCcCcccccc-CCCCccEEEeccCc-cChhHHHhh-hcCCCCCEEEecCC-CCChhhHHH-HhcCCCC
Q 015457           59 KLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDS-LSALGSL  133 (406)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~~~~~~~~~-~~~l~~L  133 (406)
                      .|+.|.+++|..+.......+. +||++++|.+.++. +++.....+ ..+++|+++++..| .++...... ..++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            4566666666555544444443 56666666666543 343332222 45566666666664 334333332 2345666


Q ss_pred             cEEEcCCcc-CChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCC-CChhhhHh-hhCCCCCCEEEc
Q 015457          134 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVN-LTGLCNLKCLEL  210 (406)
Q Consensus       134 ~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~l~l  210 (406)
                      +++++++|. +.+.....                       ..+.+..++.+...||. ........ -..+..+..+++
T Consensus       219 ~~lNlSwc~qi~~~gv~~-----------------------~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQA-----------------------LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL  275 (483)
T ss_pred             HHhhhccCchhhcCcchH-----------------------HhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence            666666553 11111100                       11223334444444431 11111110 111223333333


Q ss_pred             CCCc-CCchh-HHhhcCCCCCcEEeccCC-CCChhHHHHhh-CCCCCcEEECCCCC-CChHHHHHHh-cCCCCCEEEccC
Q 015457          211 SDTQ-VGSSG-LRHLSGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFG  284 (406)
Q Consensus       211 ~~~~-~~~~~-~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~  284 (406)
                      ..+. ++... ...-..+..|+.+..+++ .+++.....++ ++++|+.+-+.+|+ ++......++ +++.|+.+++.+
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence            3332 11111 111123455555555544 33443333333 35666666666553 3333333332 455666666666


Q ss_pred             CCCChhH--HHHhhcCCCCCEEEccCCC-CChHHHHhhh----cCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeC
Q 015457          285 ARITDSG--AAYLRNFKNLRSLEICGGG-LTDAGVKHIK----DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN  357 (406)
Q Consensus       285 ~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  357 (406)
                      +......  ...-..++.|+.+.++.|. +++.+...+.    ....|..+.+++|+.+.+...+-+..+++|+.+++-+
T Consensus       356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            5543222  1112345666666666553 3333222222    2356666666777666666666666666777766666


Q ss_pred             Cc-cChhHHHhc-CCCCCccEEEccCC
Q 015457          358 SR-ITSAGLRHL-KPLKNLRSLTLESC  382 (406)
Q Consensus       358 ~~-~~~~~~~~l-~~~~~L~~l~l~~~  382 (406)
                      |+ +++.....+ ..+|++++..+.+-
T Consensus       436 ~q~vtk~~i~~~~~~lp~i~v~a~~a~  462 (483)
T KOG4341|consen  436 CQDVTKEAISRFATHLPNIKVHAYFAP  462 (483)
T ss_pred             hhhhhhhhhHHHHhhCccceehhhccC
Confidence            65 444444444 35666665555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=3e-12  Score=103.37  Aligned_cols=179  Identities=23%  Similarity=0.258  Sum_probs=88.6

Q ss_pred             CCEEEcCCCcCCchh-HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCC-CCChHHH-HHHhcCCCCCEEE
Q 015457          205 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGL-AALTSLTGLTHLD  281 (406)
Q Consensus       205 L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~L~~L~  281 (406)
                      |++++++...++... ...+..|..|+.|.+.+..+.+.....++...+|+.++++.+ .++.... ..+.+|+.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            444555444443322 122344455555555555555554455555555555555543 3333322 2234555555555


Q ss_pred             ccCCCCChhHHHH-hh-cCCCCCEEEccCCC--CChHHHH-hhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457          282 LFGARITDSGAAY-LR-NFKNLRSLEICGGG--LTDAGVK-HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  356 (406)
Q Consensus       282 l~~~~~~~~~~~~-~~-~~~~L~~L~l~~~~--~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  356 (406)
                      +++|......... +. --++|+.|+++|+.  +...... ....||+|..|++++|..++......+-+|+.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            5555544322111 11 12455555555542  2111122 224566666666666655665555566666666666666


Q ss_pred             CCc-cChhHHHhcCCCCCccEEEccCCC
Q 015457          357 NSR-ITSAGLRHLKPLKNLRSLTLESCK  383 (406)
Q Consensus       357 ~~~-~~~~~~~~l~~~~~L~~l~l~~~~  383 (406)
                      .|. +.....-.+...|+|.+|++.||-
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEecccc
Confidence            665 222233344566677777776664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.6e-12  Score=110.30  Aligned_cols=211  Identities=25%  Similarity=0.277  Sum_probs=125.4

Q ss_pred             cCCCCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCCcCCchh--HHhhcCCCCCcEEeccCCCCChhHHHHh-hCCC
Q 015457          176 KGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKL-AGLS  251 (406)
Q Consensus       176 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~  251 (406)
                      +++.+|+.+.+.++.....+. .....+++++.|+++.|-+....  ......+|+|+.|+++.|.+........ ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            355677777777775543322 34456778888888877654432  3444567888888887775543211111 1456


Q ss_pred             CCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCCCCCEEe
Q 015457          252 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN  329 (406)
Q Consensus       252 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  329 (406)
                      .|+.|.+++|.++.... ..+..+|+|+.|.+.+|...........-+..|++|+|++|.+-+.. ....+.+|.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            77778888887775432 34456777888888777422111122233566777888777655432 23345677777777


Q ss_pred             ccCCCCCChhH-H-----HHHHcCCCccEEEeeCCccChhH-HHhcCCCCCccEEEccCCCCChh
Q 015457          330 LSQNCNLTDKT-L-----ELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       330 l~~~~~~~~~~-~-----~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~l~l~~~~~~~~  387 (406)
                      ++.| .+.... +     .....+++|+.|++..|++.+.. ...+...++|+.+.+..+.+..+
T Consensus       278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            7777 343322 1     11235677888888877765422 24445566777777777766653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.21  E-value=1.3e-11  Score=104.28  Aligned_cols=302  Identities=24%  Similarity=0.299  Sum_probs=176.4

Q ss_pred             CCCcEeeccCcccccCcc--ccccCCCCccEEeecCCCCcCcCcccccc-CCCCccEEEecc-CccChhHHHh-hhcCCC
Q 015457           34 INLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISC-SKVTDSGIAY-LKGLQK  108 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~-~~~l~~  108 (406)
                      ..||.|.++||..+...+  .....||++++|++.+|..+++.....++ .|++|++|++.. ..+++....+ ...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            468899999887544332  22457899999999999888877666665 789999999987 4566666553 467899


Q ss_pred             CCEEEecCCC-CChhhH-HHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEc
Q 015457          109 LTLLNLEGCP-VTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  186 (406)
Q Consensus       109 L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  186 (406)
                      |++|+++.+. +.+... ....++..++.+...+|.-..  .+.+.                    ..-...+-+.++++
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~--------------------~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALL--------------------KAAAYCLEILKLNL  275 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHH--------------------HHhccChHhhccch
Confidence            9999998873 222111 122334445555444443111  11110                    00011222333333


Q ss_pred             cCC-CCChhhhHhh-hCCCCCCEEEcCCCcCCc-hhHHhh-cCCCCCcEEeccCC-CCChhHHHHhh-CCCCCcEEECCC
Q 015457          187 DSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGS-SGLRHL-SGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDA  260 (406)
Q Consensus       187 ~~~-~~~~~~~~~~-~~~~~L~~l~l~~~~~~~-~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~  260 (406)
                      ..| .+++.....+ ..+..|+.++.+++.... .....+ ..+++|+.+.+..+ .+++.....++ +++.|+.+++.+
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence            333 2222221111 234456666665544322 112222 35677777777766 35555555555 467777777777


Q ss_pred             CCCChHH-H-HHHhcCCCCCEEEccCCCCC-hhHHHHh----hcCCCCCEEEccCCC-CChHHHHhhhcCCCCCEEeccC
Q 015457          261 RQITDTG-L-AALTSLTGLTHLDLFGARIT-DSGAAYL----RNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQ  332 (406)
Q Consensus       261 ~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~  332 (406)
                      +...... . ..-.+++.|+.+.++.|... +.+...+    ..+..|+.+.++++. +++...+.+..|++|+.+++-+
T Consensus       356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            6544322 1 22236778888888877543 3322222    345778888888886 4455566777888999999988


Q ss_pred             CCCCChhHHHHHH-cCCCccEEEeeC
Q 015457          333 NCNLTDKTLELIS-GLTGLVSLNVSN  357 (406)
Q Consensus       333 ~~~~~~~~~~~l~-~~~~L~~L~l~~  357 (406)
                      |..+.......+. ++|+++..-+-.
T Consensus       436 ~q~vtk~~i~~~~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  436 CQDVTKEAISRFATHLPNIKVHAYFA  461 (483)
T ss_pred             hhhhhhhhhHHHHhhCccceehhhcc
Confidence            8777766655554 678776655544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.7e-11  Score=99.11  Aligned_cols=197  Identities=24%  Similarity=0.285  Sum_probs=136.4

Q ss_pred             CCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHH-HHhhCCCCCcE
Q 015457          179 TNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSL-RKLAGLSSLKS  255 (406)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~l~~~~~L~~  255 (406)
                      ..+++++++...++.... ..++.+.+|+.+.+.+..+.+.....+++-.+|+.++++.+ ++++... -.+.+++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            457888888777765433 35567888888888888888777777888888999988876 5665443 34567889999


Q ss_pred             EECCCCCCChHHH-HHHh-cCCCCCEEEccCCCCC---hhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhcCCCCCEEe
Q 015457          256 LNLDARQITDTGL-AALT-SLTGLTHLDLFGARIT---DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLN  329 (406)
Q Consensus       256 L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~  329 (406)
                      |+++.|.+..... ..+. --++|+.|+++|+.-.   .........+|+|.+|++++|. +.......|.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            9999887665322 1111 2267888999887532   1223334679999999999874 5555566778899999999


Q ss_pred             ccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhc-CCCCCccE
Q 015457          330 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRS  376 (406)
Q Consensus       330 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~  376 (406)
                      ++.|..+.....-.+...|+|.+|++-||--.. ..+.+ ..+++|+.
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt-~mel~~e~~~~lki  391 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT-TMELLKEMLSHLKI  391 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccccCch-HHHHHHHhCccccc
Confidence            999955555444456678999999999885322 23333 34566654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=4e-12  Score=107.96  Aligned_cols=230  Identities=20%  Similarity=0.200  Sum_probs=158.2

Q ss_pred             CCCCccEEEecCCccchhHH-hhhcCCCCCCeEEccCCCCChh--hhHhhhCCCCCCEEEcCCCcCCchhHH-hhcCCCC
Q 015457          153 KIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTN  228 (406)
Q Consensus       153 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~  228 (406)
                      ++++|+...+.++.+..... .....+++++.|+++.|-+...  .......+|+|+.|+++.|.+...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            56788999998887653221 3556889999999999865443  233456799999999999886543221 1235689


Q ss_pred             CcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhH-HHHhhcCCCCCEEEc
Q 015457          229 LESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEI  306 (406)
Q Consensus       229 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l  306 (406)
                      ++.|.++.|+++.... ..+..+|+|+.|.+.+|...........-+..|+.|++++|.+.+.. ....+.++.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999999986433 33457899999999998522211222234467999999999876532 344678999999999


Q ss_pred             cCCCCChHHHHhh------hcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHH----HhcCCCCCccE
Q 015457          307 CGGGLTDAGVKHI------KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRS  376 (406)
Q Consensus       307 ~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~  376 (406)
                      +.|.+........      ..+|+|++|++..|....+.....+..+++|+.|.+..+.++...-    ..++..+.|..
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~  358 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVK  358 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhh
Confidence            9998876432222      3479999999999954445556666778899999999988764322    12344555555


Q ss_pred             EEccCC
Q 015457          377 LTLESC  382 (406)
Q Consensus       377 l~l~~~  382 (406)
                      |+=.++
T Consensus       359 LN~~di  364 (505)
T KOG3207|consen  359 LNDVDI  364 (505)
T ss_pred             hccccc
Confidence            444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=2.6e-11  Score=93.68  Aligned_cols=130  Identities=27%  Similarity=0.344  Sum_probs=48.1

Q ss_pred             CCCCCcEEECCCCCCChHHHHHHh-cCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCE
Q 015457          249 GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  327 (406)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  327 (406)
                      ++.++++|++.++.++..  ..+. .+.+|+.|++++|.++..  ..+..+++|++|++++|.++.........+|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            455678888888888774  3343 467788888888888753  23556788888888888887653322245788888


Q ss_pred             EeccCCCCCCh-hHHHHHHcCCCccEEEeeCCccChhH---HHhcCCCCCccEEEccCCC
Q 015457          328 LNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCK  383 (406)
Q Consensus       328 L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~l~l~~~~  383 (406)
                      |++++| .+.. .....++.+++|+.|++.+|++.+..   ...+..+|+|+.||-....
T Consensus        93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             EECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            888888 4443 23355667788888888888876422   2334567888877665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.14  E-value=2.1e-11  Score=117.63  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=60.1

Q ss_pred             CCCccEEEeccCc--cChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccE
Q 015457           82 LTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV  159 (406)
Q Consensus        82 ~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  159 (406)
                      +++|+.|-+..+.  +.......|..+|.|++|++++|.-....|..++.+-+|++|+++++.+. ..|..+.++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            4456666665553  33333444566666666666665444445666666666666666666655 34555666666666


Q ss_pred             EEecCCccchhHHhhhcCCCCCCeEEccCC
Q 015457          160 LNLGFNEITDECLVHLKGLTNLESLNLDSC  189 (406)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (406)
                      |++..+......+.....+++|++|.+...
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeecc
Confidence            666655433233333344666666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=4.8e-11  Score=92.20  Aligned_cols=130  Identities=28%  Similarity=0.338  Sum_probs=45.7

Q ss_pred             CCCCCcEEeccCCCCChhHHHHhh-CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457          225 GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  303 (406)
Q Consensus       225 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  303 (406)
                      ++..++.|+++++.++..  +.++ .+.+|+.|++++|.++..  ..+..++.|+.|++++|.++.........+|+|++
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            445677777877777652  3344 467778888888877763  45566777888888888777653333345777888


Q ss_pred             EEccCCCCChHH-HHhhhcCCCCCEEeccCCCCCCh--hHHHHHHcCCCccEEEeeCC
Q 015457          304 LEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNS  358 (406)
Q Consensus       304 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~  358 (406)
                      |++++|.+.+.. ...+..+|+|+.|++.+|+....  .-...+..+|+|+.||-...
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            888877765532 23456677888888887753222  12344556777777776544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.03  E-value=1e-10  Score=113.00  Aligned_cols=181  Identities=24%  Similarity=0.250  Sum_probs=97.7

Q ss_pred             cCCCCcEeeccCcc--cccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCC
Q 015457           32 GLINLVKLDLERCT--RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL  109 (406)
Q Consensus        32 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (406)
                      .++.|++|-+..+.  ........|..+|.|++||+++|.... ..|..++.+-+||+|+++++.+. ..|..+.+++.|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            44567777776654  222223336667777777777654433 34566777777777777777776 455667777777


Q ss_pred             CEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCC--hhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCC----e
Q 015457          110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE----S  183 (406)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~  183 (406)
                      .+|++..+......+.....+++|++|.+......  ......+..+.+|+.+.......  .....+..+..|.    .
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS  698 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence            77777766443333555556777777777654311  11223344556666665544332  1111112222222    2


Q ss_pred             EEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc
Q 015457          184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS  217 (406)
Q Consensus       184 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  217 (406)
                      +.+.++.. ......+..+.+|+.|.+.++....
T Consensus       699 l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  699 LSIEGCSK-RTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence            22222211 1223344556677777777766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=1.7e-10  Score=93.62  Aligned_cols=128  Identities=27%  Similarity=0.368  Sum_probs=65.8

Q ss_pred             CCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEec
Q 015457          251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  330 (406)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  330 (406)
                      +.|+++++++|.++... ....-.|.++.|++++|.+.....  ++.+++|+.|++++|.++.. ..+-.++-+.++|.+
T Consensus       284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence            44555666666555542 233334556666666666554322  45556666666666555443 222234455666666


Q ss_pred             cCCCCCChhHHHHHHcCCCccEEEeeCCccChhH-HHhcCCCCCccEEEccCCCCC
Q 015457          331 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVT  385 (406)
Q Consensus       331 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~l~l~~~~~~  385 (406)
                      ++| .+.  ....+.++=+|..||+++|+|...- .+.++++|.|+.+.+.+|++.
T Consensus       360 a~N-~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQN-KIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhh-hHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            655 222  2233444555666666666654322 234455666666666666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.98  E-value=3.9e-09  Score=84.59  Aligned_cols=45  Identities=20%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             hhcCCCCCCeEEccCCCCChhhhH----hhhCCCCCCEEEcCCCcCCch
Q 015457          174 HLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSS  218 (406)
Q Consensus       174 ~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~  218 (406)
                      ++..+|+|+.+++++|.+....+.    .++....|.+|.+.+|.++..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            345566666666666655433222    234445666666666665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=2e-10  Score=93.24  Aligned_cols=59  Identities=12%  Similarity=0.001  Sum_probs=34.8

Q ss_pred             CCCCceeeccCCcc-------CCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecC
Q 015457            8 LSNLTSLSFRRNNA-------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW   67 (406)
Q Consensus         8 ~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   67 (406)
                      |.+|.+|.+++...       .....+..+.-|++|+.+.++.|.-- ........-|.|+++....
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~  246 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHN  246 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeec
Confidence            56777888776532       11222334567889999999988621 1111122346777777764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.84  E-value=1.3e-07  Score=76.16  Aligned_cols=90  Identities=21%  Similarity=0.300  Sum_probs=49.1

Q ss_pred             cCCCCCCeEEccCCCCChhhhHhhh----CCCCCCEEEcCCCcCCc----------hhHHhhcCCCCCcEEeccCCCCCh
Q 015457          176 KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLELSDTQVGS----------SGLRHLSGLTNLESINLSFTGISD  241 (406)
Q Consensus       176 ~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~l~l~~~~~~~----------~~~~~l~~~~~L~~L~l~~~~~~~  241 (406)
                      ..+..+..+++++|.+.......++    +-.+|+...+++-..+.          ...+.+.+||+|+.+++++|-+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3466777778888777655444433    33456666555432221          112344566777777776665543


Q ss_pred             hHH----HHhhCCCCCcEEECCCCCCCh
Q 015457          242 GSL----RKLAGLSSLKSLNLDARQITD  265 (406)
Q Consensus       242 ~~~----~~l~~~~~L~~L~l~~~~~~~  265 (406)
                      ..+    ..++....|.+|.+.+|.+..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            322    233455666666666665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=1.8e-09  Score=68.53  Aligned_cols=61  Identities=34%  Similarity=0.438  Sum_probs=41.3

Q ss_pred             CCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCC
Q 015457          323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  384 (406)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~  384 (406)
                      |+|++|++++| .+.......+.++++|++|++++|.+....+..|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45666666666 56666556666667777777777777666666667777777777777654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=1.7e-08  Score=82.06  Aligned_cols=204  Identities=24%  Similarity=0.245  Sum_probs=124.1

Q ss_pred             CCCCCCeEEccCCCCChhh--hHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCC
Q 015457          177 GLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSL  253 (406)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L  253 (406)
                      ..+.++.+++.+|.+++..  ...+.++|.|+.|+++.|.+.......-....+|+.+.+.+..+.-... ..+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            3456666666666665432  2334566777777777766654321111234577777777776654332 334567788


Q ss_pred             cEEECCCCCCChHHH--HHHh-cCCCCCEEEccCCCCCh--hHHHHhhcCCCCCEEEccCCCCChHHH-HhhhcCCCCCE
Q 015457          254 KSLNLDARQITDTGL--AALT-SLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTL  327 (406)
Q Consensus       254 ~~L~l~~~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~  327 (406)
                      ++|+++.|.......  .... .-+.++++...+|...-  .....-..+|++..+.+++|.+..... .....+|.+-.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            888887773322100  1111 12356666666665321  111223457999999999998765432 23455677878


Q ss_pred             EeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHH----Hh--cCCCCCccEEEcc
Q 015457          328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL----RH--LKPLKNLRSLTLE  380 (406)
Q Consensus       328 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~--l~~~~~L~~l~l~  380 (406)
                      |+++.+..-.+...+.+.+|+.|..|.++++++.+..-    ..  ++.+++++.|+=+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            89988855666788899999999999999999754221    11  2567788877654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=1.1e-08  Score=64.89  Aligned_cols=9  Identities=33%  Similarity=0.663  Sum_probs=3.2

Q ss_pred             CCCccEEEe
Q 015457          154 IGSLKVLNL  162 (406)
Q Consensus       154 l~~L~~L~l  162 (406)
                      +++|+.|++
T Consensus        48 l~~L~~L~l   56 (61)
T PF13855_consen   48 LPNLRYLDL   56 (61)
T ss_dssp             STTESEEEE
T ss_pred             CCCCCEEeC
Confidence            333333333

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.63  E-value=1.1e-07  Score=89.99  Aligned_cols=153  Identities=25%  Similarity=0.339  Sum_probs=83.0

Q ss_pred             CCCcEEeccCCC-CChhHHHHhh-CCCCCcEEECCCCCCChHH-HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457          227 TNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  303 (406)
Q Consensus       227 ~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  303 (406)
                      .+|++|++++.. +....+..++ -+|+|++|.+.+-.+.... .....++|+|..||+++++++..  ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            456666665532 1222233333 2566666666665554432 23445666777777777666653  44556666666


Q ss_pred             EEccCCCCCh-HHHHhhhcCCCCCEEeccCCCCCChh--HHHHH---HcCCCccEEEeeCCccChhHHHhc-CCCCCccE
Q 015457          304 LEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDK--TLELI---SGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRS  376 (406)
Q Consensus       304 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~  376 (406)
                      |.+.+-.+.. .....+-.+.+|+.||++........  ..+.+   ..+|+|+.||.++..+.+...+.+ ...|+|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            6666654443 22334445677777777665333322  12222   146777777777777766666554 34555665


Q ss_pred             EEccC
Q 015457          377 LTLES  381 (406)
Q Consensus       377 l~l~~  381 (406)
                      +..-+
T Consensus       280 i~~~~  284 (699)
T KOG3665|consen  280 IAALD  284 (699)
T ss_pred             hhhhh
Confidence            55443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.62  E-value=1.4e-07  Score=89.30  Aligned_cols=151  Identities=22%  Similarity=0.274  Sum_probs=113.7

Q ss_pred             CCCCcEEECCCCCCChH-HHHHH-hcCCCCCEEEccCCCCCh-hHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCC
Q 015457          250 LSSLKSLNLDARQITDT-GLAAL-TSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  326 (406)
Q Consensus       250 ~~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  326 (406)
                      -.+|++|+++|...-.. .+..+ .-+|+|++|.+.|-.+.. ........+|+|..||+++++++..  ..++.+.+|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            46899999998654332 23333 367999999999976643 4455567899999999999999875  6678899999


Q ss_pred             EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC------hhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCCCc
Q 015457          327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT------SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL  400 (406)
Q Consensus       327 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l  400 (406)
                      .|.+.+-..-.......+-.+++|+.||++.....      ....+.-..+|.|+-|+.++..+....++.+.. .-|+|
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L  277 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNL  277 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccH
Confidence            99999874444455666778999999999976632      222333356899999999999999988888865 66665


Q ss_pred             ccc
Q 015457          401 VSF  403 (406)
Q Consensus       401 ~~l  403 (406)
                      +.+
T Consensus       278 ~~i  280 (699)
T KOG3665|consen  278 QQI  280 (699)
T ss_pred             hhh
Confidence            543

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=6e-08  Score=91.99  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=70.5

Q ss_pred             CCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457          277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  356 (406)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  356 (406)
                      ++.|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence            556677777666656666667777777777777776665666667777777777777 6666666667777777777777


Q ss_pred             CCccChhHHHhcCC-CCCccEEEccCCC
Q 015457          357 NSRITSAGLRHLKP-LKNLRSLTLESCK  383 (406)
Q Consensus       357 ~~~~~~~~~~~l~~-~~~L~~l~l~~~~  383 (406)
                      +|.+.+..+..+.. ..++..+++.+|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            77766655555533 2345566666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.55  E-value=1.3e-07  Score=85.61  Aligned_cols=61  Identities=30%  Similarity=0.526  Sum_probs=25.7

Q ss_pred             CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCC
Q 015457          249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  312 (406)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  312 (406)
                      .++++..+.+.++.+... ...++.++.++.|++++|.++....  +....+++.|+++++.+.
T Consensus       230 ~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         230 NLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             hcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence            334444444444433332 1233334445555555544443222  344444555555444433

>PLN03150 hypothetical protein; Provisional

Probab=98.54  E-value=1.8e-07  Score=88.83  Aligned_cols=106  Identities=23%  Similarity=0.280  Sum_probs=79.7

Q ss_pred             CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457          109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  188 (406)
Q Consensus       109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (406)
                      ++.|+++++.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66778888877777777788888888888888887777777777888888888888888777777788888888888888


Q ss_pred             CCCChhhhHhhhCC-CCCCEEEcCCCc
Q 015457          189 CGIGDEGLVNLTGL-CNLKCLELSDTQ  214 (406)
Q Consensus       189 ~~~~~~~~~~~~~~-~~L~~l~l~~~~  214 (406)
                      |.+....+..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            87766666555442 345566666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=5.3e-08  Score=79.32  Aligned_cols=185  Identities=16%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             CCCCCEEEcCCCcCCch--hHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCC
Q 015457          202 LCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT  278 (406)
Q Consensus       202 ~~~L~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  278 (406)
                      +..++.+++..|.++..  ....+..+|.|+.|+++.|.+....-..-....+|++|.+.+..+..... ..+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            45566666666665442  23344566666666666665543221110234566666666655443222 2333455556


Q ss_pred             EEEccCCCCChhH--HHHh-hcCCCCCEEEccCCCCChHHH-Hhh-hcCCCCCEEeccCCCCCChhHHHHHHcCCCccEE
Q 015457          279 HLDLFGARITDSG--AAYL-RNFKNLRSLEICGGGLTDAGV-KHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL  353 (406)
Q Consensus       279 ~L~l~~~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  353 (406)
                      .|.++.|.+....  .... ...+.++++++..|...-..- ..+ ..+|++..+.+..|+.-+....+....+|.+--|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            6655555322100  0001 112344445554443221100 011 2356777777777754444444555566666677


Q ss_pred             EeeCCccChh-HHHhcCCCCCccEEEccCCCCCh
Q 015457          354 NVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       354 ~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      +++.+++... ...++..++.|..+.+.++++.+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            7777776542 34566677777777777777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.53  E-value=1.2e-07  Score=85.90  Aligned_cols=198  Identities=29%  Similarity=0.383  Sum_probs=132.6

Q ss_pred             EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCC-CCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457           87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN  165 (406)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (406)
                      .+....+.+.. ....+...+.+..+++.++.++.. +....... +|+.++++++.+... +..+..+++|+.|+++.|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence            45555555421 223344557788888888877775 33444453 788888888887643 245667788888888888


Q ss_pred             ccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHH
Q 015457          166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR  245 (406)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  245 (406)
                      ++. ..+......+.|+.++++++.+..... .......|+.+.+.++.... ....+..+.++..+.+..+.+... +.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-cc
Confidence            887 444444467888888888887754433 22344558888888875322 234456667777777777665542 44


Q ss_pred             HhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHH
Q 015457          246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  293 (406)
Q Consensus       246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  293 (406)
                      .++.++.++.|++++|.++....  ++...+++.++++++.+....+.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            56677889999999998888643  77788899999998887765433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=1.1e-08  Score=93.17  Aligned_cols=128  Identities=25%  Similarity=0.292  Sum_probs=76.9

Q ss_pred             CcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccC
Q 015457          253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  332 (406)
Q Consensus       253 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (406)
                      |.+.+++.|.+...+ ..+.-++.|+.|++++|+++...  .+..++.|++|||+.|.+.-..--....|. |..|.++|
T Consensus       166 L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            445555555554432 34444567777777777776532  566677777777777766554222222343 77777777


Q ss_pred             CCCCChhHHHHHHcCCCccEEEeeCCccChhHH-HhcCCCCCccEEEccCCCCChh
Q 015457          333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~  387 (406)
                      | .++.  ...+.++.+|+.||+++|-+.+... ..+-.+..|+.|++.||++...
T Consensus       242 N-~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  242 N-ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             c-HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            7 4443  3345677777788888776654332 2233456677888888876653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.38  E-value=1.6e-08  Score=89.40  Aligned_cols=171  Identities=19%  Similarity=0.186  Sum_probs=89.1

Q ss_pred             EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc
Q 015457           87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  166 (406)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (406)
                      ..+++.|.+.. .+..+..+..|+.+.+..|.+... |..+..+..|.+++++.|.+.. .|..++.++ |+.|.+++|.
T Consensus        79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhcccccccc-CchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCc
Confidence            34444444442 222333334455555555544332 4455566666666666665542 334444444 6666666666


Q ss_pred             cchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHH
Q 015457          167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  246 (406)
Q Consensus       167 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  246 (406)
                      ++ ..|..++..+.|..++.+.|++... +..+..+.+|+.+.+..|++.... ..+. .-.|..|+++.|++.. .+..
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScNkis~-iPv~  229 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCNKISY-LPVD  229 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccCceee-cchh
Confidence            55 4455555556666666666655322 333445555666666655554332 2333 3345666666666554 3444


Q ss_pred             hhCCCCCcEEECCCCCCChH
Q 015457          247 LAGLSSLKSLNLDARQITDT  266 (406)
Q Consensus       247 l~~~~~L~~L~l~~~~~~~~  266 (406)
                      |.++..|++|.+.+|.++..
T Consensus       230 fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhhhheeeeeccCCCCCC
Confidence            55666666666666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=1.8e-08  Score=91.77  Aligned_cols=126  Identities=29%  Similarity=0.328  Sum_probs=53.8

Q ss_pred             ccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccC
Q 015457          157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF  236 (406)
Q Consensus       157 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  236 (406)
                      |...+.++|.+. .+...+.-++.++.|++++|++.+..  .+..++.|++|++++|.+.....-...+|. |..|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            444444444444 33444444455555555555443222  344455555555555544332211111222 45555554


Q ss_pred             CCCChhHHHHhhCCCCCcEEECCCCCCChH-HHHHHhcCCCCCEEEccCCCCC
Q 015457          237 TGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARIT  288 (406)
Q Consensus       237 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  288 (406)
                      |.++.  ...+.++.+|+.|+++.|-+.+. ....+..+..|+.|.+.||.+-
T Consensus       242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            44432  22233444555555544433331 1122223334445555554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.29  E-value=3.7e-08  Score=89.18  Aligned_cols=245  Identities=28%  Similarity=0.346  Sum_probs=157.3

Q ss_pred             hcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCE
Q 015457          128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC  207 (406)
Q Consensus       128 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  207 (406)
                      ..+..++.+.+..+.+.. ....+..+.+++.+++..|.+.. +...+..+++|+.+++++|.++...  .+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhh
Confidence            345566666677766554 22346677889999999988864 2222667889999999999876543  3445667899


Q ss_pred             EEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCC
Q 015457          208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  286 (406)
Q Consensus       208 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  286 (406)
                      |++.+|.+...  ..+..++.|+.++++++.+..... . ...+.+++.+.+.++.+.....  +..+..+..+++..+.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK  219 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence            99999887654  334457888888888888776444 2 4667888888888887776422  2222233344666666


Q ss_pred             CChhHHHHhhcCC--CCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChh-
Q 015457          287 ITDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA-  363 (406)
Q Consensus       287 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-  363 (406)
                      ++....  +....  .|+.+++.++.+.... ..+..++.+..+++.++ .+..  ...+...+.+..+....+.+... 
T Consensus       220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  293 (414)
T KOG0531|consen  220 ISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSN-RISN--LEGLERLPKLSELWLNDNKLALSE  293 (414)
T ss_pred             ceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhc-cccc--cccccccchHHHhccCcchhcchh
Confidence            654211  11222  3788888888877642 34556778888888877 3333  22334456666777777775421 


Q ss_pred             -HHHh--cCCCCCccEEEccCCCCChh
Q 015457          364 -GLRH--LKPLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       364 -~~~~--l~~~~~L~~l~l~~~~~~~~  387 (406)
                       ..+.  ....+.++.+.+.++++...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  294 AISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             hhhccccccccccccccccccCccccc
Confidence             1111  35667888899998886653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.28  E-value=3e-08  Score=89.79  Aligned_cols=245  Identities=31%  Similarity=0.334  Sum_probs=164.4

Q ss_pred             hcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCe
Q 015457          104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES  183 (406)
Q Consensus       104 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  183 (406)
                      ..+..++.+.+..+.+... ...+..+.+|+.+++.++.+..... .+..+++|+.|++++|.+..  ...+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheecccccccc--ccchhhccchhh
Confidence            3455666666777766652 2346778999999999999875432 26678999999999999875  334567778999


Q ss_pred             EEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhH-HhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCC
Q 015457          184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ  262 (406)
Q Consensus       184 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  262 (406)
                      |++.+|.+....  .+..++.|+.++++++.+..... . ...+.+++.+.+.++.+.....  +.....+..+.+..+.
T Consensus       145 L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  145 LNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK  219 (414)
T ss_pred             heeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence            999999875432  34458899999999999876544 2 4677899999999887765321  2223334444666666


Q ss_pred             CChHHHHHHhcCC--CCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCCh-h
Q 015457          263 ITDTGLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-K  339 (406)
Q Consensus       263 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~  339 (406)
                      +...  ..+..+.  .|+.+.++++.+.... ..+..+..+..+++.++.+...  ..+...+.+..+....+..... .
T Consensus       220 i~~~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  294 (414)
T KOG0531|consen  220 ISKL--EGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA  294 (414)
T ss_pred             ceec--cCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence            6653  2222223  3889999999887532 3456678888999988877653  2234455666666666632211 1


Q ss_pred             HHHH--HHcCCCccEEEeeCCccCh
Q 015457          340 TLEL--ISGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       340 ~~~~--l~~~~~L~~L~l~~~~~~~  362 (406)
                      ..+.  ....+.+..+.+.++++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  295 ISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hhccccccccccccccccccCcccc
Confidence            1111  4456788889999888543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.26  E-value=3.8e-08  Score=87.15  Aligned_cols=135  Identities=24%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             HhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCC
Q 015457          172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS  251 (406)
Q Consensus       172 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~  251 (406)
                      |..+.++..|.+++++.|+++.. +..+..++ |+.+-+++|+++.. +..++..+.|..|+.+.|.+.. .+..++++.
T Consensus       114 p~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~s-lpsql~~l~  189 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLT  189 (722)
T ss_pred             chhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCccccC-CcccccchhHHHhhhhhhhhhh-chHHhhhHH
Confidence            33334444444444444443221 22222222 44444444443322 2223333444444444444332 223334444


Q ss_pred             CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457          252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  313 (406)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  313 (406)
                      +|+.|.+..|.+...+.+. ..+ .|.+|+++.|++.. .|..|.+|+.|++|-|.+|.+..
T Consensus       190 slr~l~vrRn~l~~lp~El-~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  190 SLRDLNVRRNHLEDLPEEL-CSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHHHhhhhhhhCCHHH-hCC-ceeeeecccCceee-cchhhhhhhhheeeeeccCCCCC
Confidence            4444444444444432222 222 24445555544443 23344445555555555544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.26  E-value=1e-06  Score=82.31  Aligned_cols=239  Identities=29%  Similarity=0.309  Sum_probs=123.7

Q ss_pred             HhcCCCCcEeeccCcccccCc--cccccCCCCccEEeecCC-CCcCcCc---cccccCCCCccEEEeccCc-cChhHHHh
Q 015457           30 FAGLINLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWC-NCITDSD---MKPLSGLTNLKSLQISCSK-VTDSGIAY  102 (406)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~  102 (406)
                      ...++.|+.+.+.+|......  ......+++|+.|++++| .......   ......+++|+.++++++. +++.....
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            445778888887777655542  234566778888887762 2222221   1223356778888887666 66666665


Q ss_pred             hhc-CCCCCEEEecCCC-CChhhHHHH-hcCCCCcEEEcCCccCC-hh-hhhhccCCCCccEEEecCCccchhHHhhhcC
Q 015457          103 LKG-LQKLTLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQLS-DD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKG  177 (406)
Q Consensus       103 ~~~-l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~-~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  177 (406)
                      +.. +++|+.|.+.++. ++......+ ..++.|+++++++|... +. .......+++++.+.+.....          
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------  333 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------  333 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence            543 7788888877665 444433333 34677888888876543 11 112223355555544332211          


Q ss_pred             CCCCCeEEccCCCC---ChhhhHhhhCCCCCCEEEcCCCcCCchh-HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCC
Q 015457          178 LTNLESLNLDSCGI---GDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL  253 (406)
Q Consensus       178 ~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  253 (406)
                      ++.++.+.+.+...   ..........++.++.+.+..+...... ...+.+|+.|+ ..+.         ........+
T Consensus       334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~---------~~~~~~~~l  403 (482)
T KOG1947|consen  334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE---------LRLCRSDSL  403 (482)
T ss_pred             CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH---------HHhccCCcc
Confidence            23333333332211   0122233455677777777766633333 23445556552 1111         111122237


Q ss_pred             cEEECCCCCCCh-HHHHHHhc-CCCCCEEEccCCCCC
Q 015457          254 KSLNLDARQITD-TGLAALTS-LTGLTHLDLFGARIT  288 (406)
Q Consensus       254 ~~L~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~  288 (406)
                      +.|.+..+.... ........ +..++.+++.++...
T Consensus       404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            777777764332 22222222 566777777776543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.22  E-value=4e-06  Score=78.27  Aligned_cols=132  Identities=33%  Similarity=0.366  Sum_probs=77.1

Q ss_pred             CCCCCCeEEccCCC-CChh-hhHhhhCCCCCCEEEcCCC-cC-Cc---hhHHhhcCCCCCcEEeccCCC-CChhHHHHhh
Q 015457          177 GLTNLESLNLDSCG-IGDE-GLVNLTGLCNLKCLELSDT-QV-GS---SGLRHLSGLTNLESINLSFTG-ISDGSLRKLA  248 (406)
Q Consensus       177 ~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~l~l~~~-~~-~~---~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~  248 (406)
                      ..+.|+.+.+.++. +... .......++.|+.++++++ .. ..   ........+++|+.++++++. +++.....++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            45777777777662 3222 2334455677787777652 11 11   112233456778888887776 6666666665


Q ss_pred             C-CCCCcEEECCCCC-CChHHHHHH-hcCCCCCEEEccCCCCC-hh-HHHHhhcCCCCCEEEccC
Q 015457          249 G-LSSLKSLNLDARQ-ITDTGLAAL-TSLTGLTHLDLFGARIT-DS-GAAYLRNFKNLRSLEICG  308 (406)
Q Consensus       249 ~-~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~~L~~L~l~~  308 (406)
                      . +++|+.|.+..|. +++.+...+ ..++.|++|++++|... +. .......+++++.|.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            4 7788888877666 566555443 45777888888877653 22 222234466666655443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.91  E-value=2.1e-06  Score=61.81  Aligned_cols=133  Identities=17%  Similarity=0.193  Sum_probs=86.7

Q ss_pred             CCCcEEECCCCCCChHH--HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEE
Q 015457          251 SSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  328 (406)
Q Consensus       251 ~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  328 (406)
                      ..+..++++.|++....  ...+.....|+..++++|.+...++..-..++.+++|++++|++.+. |..++.+|.|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence            34556677777766432  23334456677788888888776666666778888889988888887 4458888889999


Q ss_pred             eccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChh
Q 015457          329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       329 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~  387 (406)
                      +++.| .+... +..+..+.++-.|+..++.+..+....+.. ...-.+++.+.++...
T Consensus       106 Nl~~N-~l~~~-p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  106 NLRFN-PLNAE-PRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDE  161 (177)
T ss_pred             ccccC-ccccc-hHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCccccc
Confidence            99888 34433 344445777888888888766655443321 2222334455555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=1.1e-05  Score=62.37  Aligned_cols=130  Identities=18%  Similarity=0.203  Sum_probs=91.6

Q ss_pred             cEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       254 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      +++++.+.++....- .-........+++++|.+..  ...+.+++.|.+|.+.+|.++...+..-.-+|+|+.|.+.+|
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            445555554444221 11123466788888887753  334677899999999999998876654455789999999999


Q ss_pred             CCCCh-hHHHHHHcCCCccEEEeeCCccChhHH---HhcCCCCCccEEEccCCCCChh
Q 015457          334 CNLTD-KTLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       334 ~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~  387 (406)
                       .+.. .....+..||.|+.|.+-+|+++...-   ..+..+|+|+.|++++-...++
T Consensus        99 -si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER  155 (233)
T KOG1644|consen   99 -SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKER  155 (233)
T ss_pred             -chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHH
Confidence             4544 345667789999999999999765333   2346789999999988765553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=1.6e-05  Score=61.43  Aligned_cols=109  Identities=22%  Similarity=0.288  Sum_probs=84.0

Q ss_pred             CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCCCCCEE
Q 015457          250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL  328 (406)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L  328 (406)
                      ..+...+++.+|.+..  ...++.++.|..|.+.+|+++...+..-.-+++|+.|.+.+|.+...+ ..-+..||.|++|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4577888999988877  467778899999999999999876666666899999999999887654 2346789999999


Q ss_pred             eccCCCCCChhH--HHHHHcCCCccEEEeeCCcc
Q 015457          329 NLSQNCNLTDKT--LELISGLTGLVSLNVSNSRI  360 (406)
Q Consensus       329 ~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~  360 (406)
                      .+-+|+.-...-  ...+..+|+|+.||+.+-..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999984222111  12345789999999988764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=2.5e-05  Score=45.17  Aligned_cols=38  Identities=32%  Similarity=0.433  Sum_probs=25.9

Q ss_pred             CCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ++|++|++++|++++..+ .+.++++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            467778888888776433 46778888888888887763

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=1.6e-05  Score=61.52  Aligned_cols=83  Identities=23%  Similarity=0.297  Sum_probs=56.7

Q ss_pred             CCEEEccCCCCChhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhc-CCCCCEEeccCCCCCChhHHHHHHcCCCccEEE
Q 015457          277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN  354 (406)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  354 (406)
                      ++.++-+++.+..++...+..++.++.|.+.+|. +.+.....++. .|+|+.|++++|+.+++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            5666667777777777777777777777777764 44444444432 477777777777777777777777777777777


Q ss_pred             eeCCc
Q 015457          355 VSNSR  359 (406)
Q Consensus       355 l~~~~  359 (406)
                      +.+-+
T Consensus       183 l~~l~  187 (221)
T KOG3864|consen  183 LYDLP  187 (221)
T ss_pred             hcCch
Confidence            77665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.71  E-value=1.4e-05  Score=59.66  Aligned_cols=10  Identities=10%  Similarity=0.401  Sum_probs=3.8

Q ss_pred             cCCCCCEEec
Q 015457          321 DLSSLTLLNL  330 (406)
Q Consensus       321 ~~~~L~~L~l  330 (406)
                      .+++++.+.+
T Consensus        79 ~~~~l~~i~~   88 (129)
T PF13306_consen   79 NCTNLKNIDI   88 (129)
T ss_dssp             T-TTECEEEE
T ss_pred             cccccccccc
Confidence            3344444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=8e-06  Score=66.32  Aligned_cols=80  Identities=18%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             CCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCCh-hHHHHHHcCCCccEE
Q 015457          275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSL  353 (406)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L  353 (406)
                      .+.++|++.||.+++.  .....++.|+.|.++-|.++..  ..+..|.+|+.|+|..| .+.+ .-...+.++|+|+.|
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence            4556677777776653  2345667777777777766653  33556677777777766 3333 233556666777777


Q ss_pred             EeeCCc
Q 015457          354 NVSNSR  359 (406)
Q Consensus       354 ~l~~~~  359 (406)
                      .+..|+
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.62  E-value=8.2e-05  Score=55.50  Aligned_cols=82  Identities=24%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             ccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCC
Q 015457            5 LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN   84 (406)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~   84 (406)
                      |.++++|+.+.+...  +..+....|..+++|+.+.+.+. ........+.+++.|+.+.+..  .+.......+..+++
T Consensus         8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence            445555555555432  22333344555555555555442 1111122344444455555532  122222233344445


Q ss_pred             ccEEEec
Q 015457           85 LKSLQIS   91 (406)
Q Consensus        85 L~~L~l~   91 (406)
                      |+.+.+.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            5554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.61  E-value=9.8e-06  Score=58.50  Aligned_cols=86  Identities=20%  Similarity=0.176  Sum_probs=40.8

Q ss_pred             cCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457          224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  303 (406)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  303 (406)
                      ..-..|+..++++|.+.+.....-..++..+.+++.+|++.+.+.+ ++.++.|+.++++.|.+...+ ..+..+.++-.
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l~~  127 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP-RVIAPLIKLDM  127 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch-HHHHHHHhHHH
Confidence            3344455555555555443333333344555555555555554333 555555555555555554332 22223444444


Q ss_pred             EEccCCCC
Q 015457          304 LEICGGGL  311 (406)
Q Consensus       304 L~l~~~~~  311 (406)
                      |+..+|..
T Consensus       128 Lds~~na~  135 (177)
T KOG4579|consen  128 LDSPENAR  135 (177)
T ss_pred             hcCCCCcc
Confidence            44444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=1.1e-05  Score=65.48  Aligned_cols=78  Identities=24%  Similarity=0.275  Sum_probs=34.8

Q ss_pred             CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH-HHhhhcCCCCCEEec
Q 015457          252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNL  330 (406)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l  330 (406)
                      +.+.|++.||.+++  ......|+.|+.|.++-|.++..  ..+..|++|++|++..|.|.+.. ...+..+|+|+.|.|
T Consensus        20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccH--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            33444444444444  23334455555555555554432  22344455555555544444321 122334455555555


Q ss_pred             cCC
Q 015457          331 SQN  333 (406)
Q Consensus       331 ~~~  333 (406)
                      ..|
T Consensus        96 ~EN   98 (388)
T KOG2123|consen   96 DEN   98 (388)
T ss_pred             ccC
Confidence            544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=4.9e-05  Score=58.86  Aligned_cols=82  Identities=32%  Similarity=0.475  Sum_probs=38.9

Q ss_pred             CCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHc-CCCccEEEeeCCc-cChhHHHhcCCCCCccEEE
Q 015457          301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT  378 (406)
Q Consensus       301 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~l~  378 (406)
                      ++.++-+++.+...+.+.+..++.++.|.+.+|..+.+-..+.+.+ .++|+.|++++|+ |++.....+..+++|+.+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            3444444444444444445555555555555554444443333332 3455555555544 4444444444455555554


Q ss_pred             ccCC
Q 015457          379 LESC  382 (406)
Q Consensus       379 l~~~  382 (406)
                      +.+=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            4443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.45  E-value=0.00029  Score=40.68  Aligned_cols=35  Identities=43%  Similarity=0.539  Sum_probs=14.2

Q ss_pred             CccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      +|++|++++|.+. .++..++.+++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            3444444444444 2222344444444444444444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00068  Score=59.78  Aligned_cols=136  Identities=19%  Similarity=0.228  Sum_probs=75.1

Q ss_pred             HHhcCCCCcEeeccCcccccCccccccCCC-CccEEeecCCCCcCcCccccccCCCCccEEEeccC-ccChhHHHhhhcC
Q 015457           29 AFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGL  106 (406)
Q Consensus        29 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l  106 (406)
                      .+..++++++|++++|. +...+    .+| +|++|.+++|..++... ..+  .++|++|.+++| .+.. .      .
T Consensus        47 r~~~~~~l~~L~Is~c~-L~sLP----~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s-L------P  111 (426)
T PRK15386         47 QIEEARASGRLYIKDCD-IESLP----VLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG-L------P  111 (426)
T ss_pred             HHHHhcCCCEEEeCCCC-CcccC----CCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc-c------c
Confidence            34557888888888874 33333    233 58888888877654322 222  357888888876 3431 1      1


Q ss_pred             CCCCEEEecCCCCChhhHHHHhcC-CCCcEEEcCCccCChhhhhhcc-CC-CCccEEEecCCccchhHHhhhcCCCCCCe
Q 015457          107 QKLTLLNLEGCPVTAACLDSLSAL-GSLFYLNLNRCQLSDDGCEKFS-KI-GSLKVLNLGFNEITDECLVHLKGLTNLES  183 (406)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~-~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  183 (406)
                      +.|+.|++..+....     +..+ ++|+.|.+.+....  ....+. .+ ++|+.|++++|... ..|..+.  .+|+.
T Consensus       112 ~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~  181 (426)
T PRK15386        112 ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQS  181 (426)
T ss_pred             cccceEEeCCCCCcc-----cccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcc-cCccccc--ccCcE
Confidence            357777776544322     1222 35666666432211  000011 12 57888888877654 3333322  57788


Q ss_pred             EEccCC
Q 015457          184 LNLDSC  189 (406)
Q Consensus       184 L~l~~~  189 (406)
                      |.++.+
T Consensus       182 L~ls~n  187 (426)
T PRK15386        182 ITLHIE  187 (426)
T ss_pred             EEeccc
Confidence            887654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.00015  Score=58.64  Aligned_cols=14  Identities=36%  Similarity=0.551  Sum_probs=6.5

Q ss_pred             CCCCEEEccCCCCC
Q 015457          275 TGLTHLDLFGARIT  288 (406)
Q Consensus       275 ~~L~~L~l~~~~~~  288 (406)
                      |+|+++++++|++.
T Consensus        91 P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIK  104 (260)
T ss_pred             CceeEEeecCCccc
Confidence            44444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00014  Score=58.92  Aligned_cols=63  Identities=24%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             hcCCCCCEEEecCC--CCChhhHHHHhcCCCCcEEEcCCccCChh-hhhhccCCCCccEEEecCCc
Q 015457          104 KGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNE  166 (406)
Q Consensus       104 ~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~  166 (406)
                      ..+++|+.|.++.|  .+...+......+|+|+++++++|++... ....+..+++|..|++.+|.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            34445555555555  33332222233346666666666555421 11223344455555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.93  E-value=0.0027  Score=56.15  Aligned_cols=78  Identities=17%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             HhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCC-CCChhHHHHhhcCC
Q 015457          221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFK  299 (406)
Q Consensus       221 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~  299 (406)
                      ..+..+..++.|++++|.++...    .-.++|++|.+++|.-....+..+.  ++|++|.+++| .+.. .      .+
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s-L------P~  112 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG-L------PE  112 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc-c------cc
Confidence            33456789999999999776642    1235799999988644322223332  58999999998 4432 1      35


Q ss_pred             CCCEEEccCCCC
Q 015457          300 NLRSLEICGGGL  311 (406)
Q Consensus       300 ~L~~L~l~~~~~  311 (406)
                      +|+.|++.++..
T Consensus       113 sLe~L~L~~n~~  124 (426)
T PRK15386        113 SVRSLEIKGSAT  124 (426)
T ss_pred             ccceEEeCCCCC
Confidence            677787766543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.91  E-value=0.00024  Score=64.89  Aligned_cols=182  Identities=27%  Similarity=0.397  Sum_probs=88.0

Q ss_pred             ccEEEeccCccChhHH----HhhhcCCCCCEEEecCCCCChhhHHHHh----cC-CCCcEEEcCCccCChhh----hhhc
Q 015457           85 LKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGCPVTAACLDSLS----AL-GSLFYLNLNRCQLSDDG----CEKF  151 (406)
Q Consensus        85 L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~----~~~~  151 (406)
                      +..+.+.+|.+.+...    ..+...+.|..|+++++.+.......+.    .. ..++++++..|.+....    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4444555554443322    2334455566666666655432221111    11 33455555555544332    2233


Q ss_pred             cCCCCccEEEecCCccch----hHHhhhc----CCCCCCeEEccCCCCChhhh----HhhhCCCC-CCEEEcCCCcCCch
Q 015457          152 SKIGSLKVLNLGFNEITD----ECLVHLK----GLTNLESLNLDSCGIGDEGL----VNLTGLCN-LKCLELSDTQVGSS  218 (406)
Q Consensus       152 ~~l~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~l~l~~~~~~~~  218 (406)
                      .....++.++++.|.+..    ..+..+.    ...+++.+.+.+|.++....    ..+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            334556666666655432    1122222    34566667776665543222    22233333 55566666666544


Q ss_pred             hHHhh----cCC-CCCcEEeccCCCCChhHH----HHhhCCCCCcEEECCCCCCChH
Q 015457          219 GLRHL----SGL-TNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDT  266 (406)
Q Consensus       219 ~~~~l----~~~-~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~  266 (406)
                      ....+    ..+ +.++.+++..|.+++...    ..+..+++++++.+..|.+...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            32222    223 455677777776655433    2333456777777777766654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.98  E-value=0.0012  Score=60.33  Aligned_cols=181  Identities=30%  Similarity=0.430  Sum_probs=82.5

Q ss_pred             CCeEEccCCCCChhhhH----hhhCCCCCCEEEcCCCcCCchhHHhhcC----C-CCCcEEeccCCCCChhH----HHHh
Q 015457          181 LESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLSG----L-TNLESINLSFTGISDGS----LRKL  247 (406)
Q Consensus       181 L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~----~~~l  247 (406)
                      +..+.+.+|.+......    .+...+.|..+++..+.++......+..    . ..++.|.+..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55666666665443332    2334566777777777666443333321    1 23444555555544332    2233


Q ss_pred             hCCCCCcEEECCCCCCChHHH----HHHh----cCCCCCEEEccCCCCChhHHH----HhhcCCC-CCEEEccCCCCChH
Q 015457          248 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA  314 (406)
Q Consensus       248 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~~~  314 (406)
                      .....++.+++..|.+...+.    ..+.    ...++++|.+++|.++.....    .+...++ +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            345556666666665543211    1111    234555666666655532221    1223333 44455555555544


Q ss_pred             HHHhh----hcC-CCCCEEeccCCCCCChhHHH----HHHcCCCccEEEeeCCccCh
Q 015457          315 GVKHI----KDL-SSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       315 ~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~  362 (406)
                      +...+    ..+ +.++.++++.| .+.+....    .+..++.++.+.++.|++.+
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            33221    122 34455555555 33332222    22234455555555555443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.51  E-value=0.056  Score=26.94  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=18.3

Q ss_pred             CCCCceeeccCCccCCHHHHHHHh
Q 015457            8 LSNLTSLSFRRNNAITAQGMKAFA   31 (406)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~   31 (406)
                      |++|++|++++|..+++.....++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            578888999888877777665554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.85  E-value=0.055  Score=26.32  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=9.9

Q ss_pred             CCccEEEccCCCCChhhHHHH
Q 015457          372 KNLRSLTLESCKVTANDIKRL  392 (406)
Q Consensus       372 ~~L~~l~l~~~~~~~~~~~~~  392 (406)
                      ++|+.|++++|+++..+...+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            455555555555555544443

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.63  E-value=0.12  Score=25.72  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=12.3

Q ss_pred             CCCCCEEeccCCCCCChhHHHHH
Q 015457          322 LSSLTLLNLSQNCNLTDKTLELI  344 (406)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~l  344 (406)
                      ||+|+.|++++|..+++.....+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            35556666666655555544433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.25  E-value=0.052  Score=26.42  Aligned_cols=15  Identities=33%  Similarity=0.647  Sum_probs=5.2

Q ss_pred             CCCEEEccCCCCChH
Q 015457          300 NLRSLEICGGGLTDA  314 (406)
Q Consensus       300 ~L~~L~l~~~~~~~~  314 (406)
                      +|++|++++|.+++.
T Consensus         3 ~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    3 NLETLDLSNNQITDE   17 (24)
T ss_dssp             T-SEEE-TSSBEHHH
T ss_pred             CCCEEEccCCcCCHH
Confidence            334444444443333

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.73  E-value=0.04  Score=26.18  Aligned_cols=14  Identities=36%  Similarity=0.475  Sum_probs=8.2

Q ss_pred             CccEEEeeCCccCh
Q 015457          349 GLVSLNVSNSRITS  362 (406)
Q Consensus       349 ~L~~L~l~~~~~~~  362 (406)
                      +|++|++++|.++.
T Consensus         1 ~L~~Ldls~n~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS   14 (22)
T ss_dssp             TESEEEETSSEESE
T ss_pred             CccEEECCCCcCEe
Confidence            35666666666553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.11  E-value=0.09  Score=23.12  Aligned_cols=10  Identities=50%  Similarity=0.770  Sum_probs=3.4

Q ss_pred             ccEEEeeCCc
Q 015457          350 LVSLNVSNSR  359 (406)
Q Consensus       350 L~~L~l~~~~  359 (406)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.55  E-value=0.43  Score=23.62  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=11.7

Q ss_pred             CCccEEEeeCCccChhHHHhc
Q 015457          348 TGLVSLNVSNSRITSAGLRHL  368 (406)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~l  368 (406)
                      ++|+.|++++|.+.......|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666555444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.55  E-value=0.43  Score=23.62  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=11.7

Q ss_pred             CCccEEEeeCCccChhHHHhc
Q 015457          348 TGLVSLNVSNSRITSAGLRHL  368 (406)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~l  368 (406)
                      ++|+.|++++|.+.......|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666555444443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.26  E-value=0.95  Score=22.94  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=12.9

Q ss_pred             CCccEEEccCCCCChhhHHHH
Q 015457          372 KNLRSLTLESCKVTANDIKRL  392 (406)
Q Consensus       372 ~~L~~l~l~~~~~~~~~~~~~  392 (406)
                      ++|++|++++|.+...+...+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            356666666666666655544

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.24  E-value=1.4  Score=40.55  Aligned_cols=65  Identities=18%  Similarity=0.189  Sum_probs=38.2

Q ss_pred             hcCCCCCEEEccCCCCChHHH-Hh-hhcCCCCCEEeccCCCCCChhHHHHHH--cCCCccEEEeeCCccC
Q 015457          296 RNFKNLRSLEICGGGLTDAGV-KH-IKDLSSLTLLNLSQNCNLTDKTLELIS--GLTGLVSLNVSNSRIT  361 (406)
Q Consensus       296 ~~~~~L~~L~l~~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~  361 (406)
                      .+.+.+..+++++|.+..... .. -...|+|+.|+|++|....... ..+.  +...|++|-+.||++.
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLC  283 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccc
Confidence            356778888888887654321 11 2346888888888872222211 1222  2345778888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-09
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-09
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-08
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-08
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-08
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-08
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		3e-07
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-04
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		5e-04
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		5e-04
2y5q_A	362	Listeria Monocytogenes Inlb (Internalin B) Residues		7e-04
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		9e-04

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN IT   +     L NL +L+L   T     +  L GL  L+ LN  + N +TD  +KP
Sbjct: 116 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKP 167
Query: 79  LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
           L+ LT L+ L IS +KV+D  +              E    T   +  ++ LG   +L  
Sbjct: 168 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 274
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ 
Sbjct: 275 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 330
Query: 256 L 256
           L
Sbjct: 331 L 331

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 28/241 (11%)
Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN IT   +     L NL +L+L   T     +  L GL  L+ LN  + N +TD  +KP
Sbjct: 116 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKP 167
Query: 79  LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
           L+ LT L+ L IS +KV+D  +              E    T   +  ++ LG   +L  
Sbjct: 168 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  
Sbjct: 221 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 274
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ 
Sbjct: 275 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 330
Query: 256 L 256
           L
Sbjct: 331 L 331

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 28/241 (11%)
Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KP
Sbjct: 121 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKP 172
Query: 79  LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
           L+ LT L+ L IS +KV+D  +              E    T   +  ++ LG   +L  
Sbjct: 173 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  
Sbjct: 226 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 279
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ 
Sbjct: 280 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 335
Query: 256 L 256
           L
Sbjct: 336 L 336

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 28/241 (11%)
Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           NN IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KP
Sbjct: 120 NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKP 171
Query: 79  LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFY 135
           L+ LT L+ L IS +KV+D  +              E    T   +  ++ LG   +L  
Sbjct: 172 LANLTTLERLDISSNKVSDISV-------LAKLTNLESLIATNNQISDITPLGILTNLDE 224
Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  
Sbjct: 225 LSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 278
Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 255
           +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ 
Sbjct: 279 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQR 334
Query: 256 L 256
           L
Sbjct: 335 L 335

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           +   A L NL  L     T  +  + ++  L  L +LN    +  T SD+  LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87  SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
            L  S ++VTD                          L  L+ L +L  L+++  ++SD 
Sbjct: 155 QLNFSSNQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 187
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
                +K+ +L+ L    N+I+D  +  L  LTNL+ L+L+   + D G   L  L NL 
Sbjct: 188 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 242
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L+L++ Q+  S L  LSGLT L  + L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 243 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           +   A L NL  L     T  +  + ++  L  L +LN    +  T SD+  LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87  SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
            L  S ++VTD                          L  L+ L +L  L+++  ++SD 
Sbjct: 155 QLSFSSNQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 187
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
                +K+ +L+ L    N+I+D  +  L  LTNL+ L+L+   + D G   L  L NL 
Sbjct: 188 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 242
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L+L++ Q+  S L  LSGLT L  + L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 243 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 27  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 86
           +   A L NL  L     T  +  + ++  L  L +LN    +  T SD+  LSGLT+L+
Sbjct: 100 ITPLANLTNLTGL-----TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 87  SLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 146
            L  S ++VTD                          L  L+ L +L  L+++  ++SD 
Sbjct: 155 QLSFSSNQVTD--------------------------LKPLANLTTLERLDISSNKVSD- 187
Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
                +K+ +L+ L    N+I+D  +  L  LTNL+ L+L+   + D G   L  L NL 
Sbjct: 188 -ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLT 242
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            L+L++ Q+  S L  LSGLT L  + L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 243 DLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 35/231 (15%)
Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYXXXXXXXXXX 112
           L  L K  SLN+   + +  SD+ PLS  T L  L ++ SKV D + IA           
Sbjct: 128 LANLTKXYSLNLGANHNL--SDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185
Query: 113 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV------------ 159
             +   ++      L++L SL Y      Q++D       +++ SLK+            
Sbjct: 186 YNQIEDISP-----LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLA 240
Query: 160 -------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
                  L +G N+I+D   V  K LT L+ LN+ S  I D  ++N   L  L  L L++
Sbjct: 241 NLSQLTWLEIGTNQISDINAV--KDLTKLKXLNVGSNQISDISVLN--NLSQLNSLFLNN 296
Query: 213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            Q+G+     + GLTNL ++ LS   I+D  +R LA LS   S +  A Q+
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQNHITD--IRPLASLSKXDSADF-ANQV 344

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 76  MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 125
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 180
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 181 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 218
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 219 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 260
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 76  MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 125
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 180
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 440
Query: 181 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 218
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 219 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 260
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 16  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 76  MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 125
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 180
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 181 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 218
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 219 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 260
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           LVHL     LESL L +  I D  +  L+ L  L  L L D Q+  S +  L+GLT L++
Sbjct: 127 LVHL---PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 179
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
           + LS   ISD  LR LAGL +L  L L +++
Sbjct: 180 LYLSKNHISD--LRALAGLKNLDVLELFSQE 208

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 73  DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 128
           +SD+K + G   L NL SL +S +++TD S I Y            +   +    L +L 
Sbjct: 53  NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            LG LF L+ N+ +      +           N G ++I    LVHL     LESL L +
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLP---QLESLYLGN 163
Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
             I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++ LS   ISD  LR LA
Sbjct: 164 NKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALA 217
Query: 249 GLSSLKSLNLDARQ 262
           GL +L  L L +++
Sbjct: 218 GLKNLDVLELFSQE 231

>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 Length = 362

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           LVHL     LESL L +  I D  +  L+ L  L  L L D Q+  S +  L+GLT L++
Sbjct: 130 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182
Query: 232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
           + LS   ISD  LR LAGL +L  L L +++
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQE 211

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 151 FSKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 206
           F+++ SL+ L+LG       I++      +GL NL  LNL  C + D  + NLT L  L+
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAF---EGLVNLRYLNLGMCNLKD--IPNLTALVRLE 181
Query: 207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
            LELS  ++         GLT+L  + L    ++         L SL+ LNL
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	406
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-28
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-26
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-34
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-28
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-32
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-30
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-23
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-21
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-23
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-20
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  163 bits (414), Expect = 4e-45
 Identities = 91/440 (20%), Positives = 160/440 (36%), Gaps = 49/440 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLE 61
            S  + L  +  +R   +T   ++  A    N   L L  C      GL  +      L+
Sbjct: 101 SSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159

Query: 62  SLNIKWCNC--ITDSDMKPLS-GLTNLKSLQISC--SKVTDSGIAYL-KGLQKLTLLNLE 115
            L+++  +   ++   +       T+L SL ISC  S+V+ S +  L      L  L L 
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIGSLKVLNLGFNEITD 169
                      L     L  L                     S    L+ L+ GF +   
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVP 278

Query: 170 ECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHL-SGL 226
             L  +    + L +LNL    +    LV L   C  L+ L + D  +  +GL  L S  
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-YIEDAGLEVLASTC 337

Query: 227 TNLESINLS---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL-TSLT 275
            +L  + +             +++  L  ++ G   L+S+    RQ+T+  L  +  +  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 276 GLTHLDLFG----------ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 323
            +T   L                D G   +  + K+LR L +  G LTD   ++I     
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAK 456

Query: 324 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLES 381
            + +L+++     +D  +  ++SG   L  L + +       L  +   L+ +RSL + S
Sbjct: 457 KMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 382 CKVTANDIKRLQSRDLPNLV 401
           C V+    K L  + +P L 
Sbjct: 516 CSVSFGACKLLGQK-MPKLN 534

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  124 bits (313), Expect = 3e-31
 Identities = 74/450 (16%), Positives = 139/450 (30%), Gaps = 59/450 (13%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------HGGLV 52
           +           N               +  ++L+                         
Sbjct: 40  IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA 99

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 109
                  LE + +K    +TD  ++ ++    N K L +S C   +  G+A +    + L
Sbjct: 100 MSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 110 TLLNLEGCPVTAACLDSLSALG----SLFYLNLNRC--QLSDDGCEKFSK-IGSLKVLNL 162
             L+L    V       LS       SL  LN++    ++S    E+      +LK L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD----TQVGS 217
                 ++    L+    LE L            + +   +    C EL           
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 218 SGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTS-L 274
           + L  + S  + L ++NLS+  +    L KL      L+ L +    I D GL  L S  
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTC 337

Query: 275 TGLTHLDLFG---------ARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLS 323
             L  L +F            +T+ G  +       L S+      +T+A +  I ++  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 324 SLTLLNLS---------QNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLK 372
           ++T   L                D     ++     L  L++S   +T     ++    K
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAK 456

Query: 373 NLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
            +  L++     +   +  +      +L  
Sbjct: 457 KMEMLSVAFAGDSDLGMHHV-LSGCDSLRK 485

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 95.7 bits (238), Expect = 1e-21
 Identities = 54/280 (19%), Positives = 105/280 (37%), Gaps = 28/280 (10%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           +    S  S LT+L+       +   +K       L +L +       G  V       L
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340

Query: 61  ESLNIKWCNC--------ITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL-KGLQKLT 110
             L +             +T+  +  +S G   L+S+   C ++T++ +  + +    +T
Sbjct: 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
              L      A    +L  L   F   +  C+              L+ L+L    +TD+
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-------------DLRRLSLSGL-LTDK 446

Query: 171 CLVHL-KGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLR-HLSGLT 227
              ++      +E L++   G  D G+ ++ +G  +L+ LE+ D   G   L  + S L 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506

Query: 228 NLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDT 266
            + S+ +S   +S G+ + L   +  L    +D R   D+
Sbjct: 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDS 546

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL-KGLMKLES 62
           +    +L  LS      +T +  +        +  L +        G+ ++  G   L  
Sbjct: 428 VEHCKDLRRLSLS--GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPV 119
           L I+ C     + +   S L  ++SL +S   V+      L        + +++  G P 
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545

Query: 120 TAACLDSLSAL 130
           +      +  +
Sbjct: 546 SRPESCPVERV 556

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  157 bits (398), Expect = 2e-43
 Identities = 109/401 (27%), Positives = 186/401 (46%), Gaps = 34/401 (8%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T + + L  +T+L   R   I    +     L NL +++     ++   +  LK L KL 
Sbjct: 39  TVSQTDLDQVTTLQADRLG-IK--SIDGVEYLNNLTQINF-SNNQLT-DITPLKNLTKLV 93

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            + +   N I   D+ PL+ LTNL  L +  +++TD  I  LK L  L  L L    ++ 
Sbjct: 94  DILMNN-NQIA--DITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 148

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
             + +LS L SL  L+              + + +L+ L++  N+++D  +  L  LTNL
Sbjct: 149 --ISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSD--ISVLAKLTNL 201

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           ESL   +  I    +  L  L NL  L L+  Q+    +  L+ LTNL  ++L+   IS+
Sbjct: 202 ESLIATNNQI--SDITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN 257

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
             L  L+GL+ L  L L A QI++  ++ L  LT LT+L+L   ++ D   + + N KNL
Sbjct: 258 --LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI--SPISNLKNL 311

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
             L +    ++D  +  +  L+ L  L    N  ++D  +  ++ LT +  L+  +++I+
Sbjct: 312 TYLTLYFNNISD--ISPVSSLTKLQRLFFYNN-KVSD--VSSLANLTNINWLSAGHNQIS 366

Query: 362 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
              L  L  L  +  L L     T   +    +  +PN V 
Sbjct: 367 D--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 2e-35
 Identities = 98/360 (27%), Positives = 163/360 (45%), Gaps = 30/360 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
             L+ L+NLT L+   N  IT   +     L NL +L+L     I   +  L GL  L+ 
Sbjct: 106 TPLANLTNLTGLTLFNNQ-IT--DIDPLKNLTNLNRLELSSN-TISD-ISALSGLTSLQQ 160

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L+    N +TD   KPL+ LT L+ L IS +KV+D  I+ L  L  L  L      ++  
Sbjct: 161 LSFG--NQVTDL--KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD- 213

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  L  L +L  L+LN  QL D      + + +L  L+L  N+I++  L  L GLT L 
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTKLT 268

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L +  I    +  L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD 
Sbjct: 269 ELKLGANQI--SNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD- 323

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            +  ++ L+ L+ L     +++D  +++L +LT +  L     +I+D     L N   + 
Sbjct: 324 -ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
            L +     T+     +   +++++ N  +N          IS        +++ +  + 
Sbjct: 379 QLGLNDQAWTN---APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 2e-35
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 29/333 (8%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
               L +     +   N    +D    + L  + +LQ     +    I  ++ L  LT +
Sbjct: 19  TDTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 73

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
           N     +T   +  L  L  L  + +N  Q++D      + + +L  L L  N+ITD  +
Sbjct: 74  NFSNNQLT--DITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITD--I 127

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             LK LTNL  L L S  I D  +  L+GL +L+ L   +          L+ LT LE +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERL 182

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           ++S   +SD  +  LA L++L+SL     QI+D  +  L  LT L  L L G ++ D G 
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT 238

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
             L +  NL  L++    +++  +  +  L+ LT L L  N  +++  +  ++GLT L +
Sbjct: 239 --LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGAN-QISN--ISPLAGLTALTN 291

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           L ++ +++    +  +  LKNL  LTL    ++
Sbjct: 292 LELNENQLED--ISPISNLKNLTYLTLYFNNIS 322

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  155 bits (393), Expect = 3e-42
 Identities = 79/418 (18%), Positives = 143/418 (34%), Gaps = 46/418 (11%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL----KGLMKL 60
           +   +L +L   + +  T  G+ +       +  L +E  +        L    +    L
Sbjct: 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194

Query: 61  ESLNIKWCNC--ITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLE 115
           E LN        I+  D++ +     +L S+++     +   G       L++    +L 
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLV 173
                     +L     L  L L+      +           ++ L+L +    T++   
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESI 232
            ++   NLE L   +  IGD GL  L   C  LK L              +    + + +
Sbjct: 313 LIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRL-------------RIERGADEQGM 358

Query: 233 NLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG----AR 286
                 +S   L  LA G   L+ + +    IT+  L ++ T L  L    L       R
Sbjct: 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418

Query: 287 ITDSG-----AAYLRNFKNLRSLEI--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTD 338
           ITD        + L   K LR        GGLTD G+ +I +   ++  + L      +D
Sbjct: 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVGESD 477

Query: 339 KTL-ELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 394
           + L E   G   L  L +     +   +      L +LR L ++  + +      +Q 
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  116 bits (291), Expect = 2e-28
 Identities = 77/459 (16%), Positives = 146/459 (31%), Gaps = 77/459 (16%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
           + + T          TA   +      NL  L L+   R             + +L  + 
Sbjct: 47  IDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAA-----------MFNLIPEN 95

Query: 68  CNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCP-VTAAC 123
                   +  +S  L  LKS+      V+D  +  L       L  L L+ C   T   
Sbjct: 96  WGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG 155

Query: 124 LDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG----SLKVLNL---GFNEITDECLVHL 175
           L S+      +  L +     S+   +   ++     SL+VLN     F +I+ + L  +
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215

Query: 176 -KGLTNLESLNLDSCGIGD--------EGLVNLTGLCNLKCLELSDTQVGSSGLRHL--- 223
            +   +L S+ +    I +          L    G    + + + +  +     R L   
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 224 --------------SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGL 268
                              +  ++L +    ++     +    +L+ L      I D GL
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL 334

Query: 269 AALTSL-TGLTHLDLFG-----------ARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 315
             L      L  L +               ++  G   L +  + L  + +    +T+  
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394

Query: 316 VKHI----KDLSSLTLLNLSQNCNLTDKTLE-----LISGLTGLVSLNVSN--SRITSAG 364
           ++ I    K+L    L+ L +   +TD  L+     L+ G   L           +T  G
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454

Query: 365 LRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           L ++ +   N+R + L     +   +    SR  PNL  
Sbjct: 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQK 492

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  111 bits (278), Expect = 1e-26
 Identities = 59/349 (16%), Positives = 115/349 (32%), Gaps = 37/349 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
                +L S+       +   G   F    NL +          G       L+    L 
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 65  IKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
               + +  ++M  L      ++ L +      T+     ++    L +L      +   
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDR 332

Query: 123 CLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG------------SLKVLNLGFNEITD 169
            L+ L+     L  L + R        ++   +              L+ + +  ++IT+
Sbjct: 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392

Query: 170 ECLVHL----KGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLKCLELSD--TQVGS 217
           E L  +    K L +   + LD    I D  L N     L G   L+          +  
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 218 SGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL-TSL 274
            GL ++     N+  + L + G SD  L + + G  +L+ L +     ++  +AA  T L
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512

Query: 275 TGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICG-GGLTDAGVKHI 319
             L +L + G R + +G   +   R + N+  +       +   G    
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE 561

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  102 bits (256), Expect = 8e-24
 Identities = 45/274 (16%), Positives = 91/274 (33%), Gaps = 30/274 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
               + +  L        T           NL  L+        G  V  +   +L+ L 
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348

Query: 65  IKWC----------NCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL----KGLQKL 109
           I+              ++   +  L+ G   L+ + +  S +T+  +  +    K L   
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408

Query: 110 TLLNLEGCP-VTAACLDS-----LSALGSLFYLNLNRC--QLSDDGCEKFSKIG-SLKVL 160
            L+ L+    +T   LD+     L     L           L+D G     +   +++ +
Sbjct: 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468

Query: 161 NLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSS 218
            LG+   +DE L+   +G  NL+ L +  C   +  +    T L +L+ L +   +   +
Sbjct: 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528

Query: 219 GLRHLS---GLTNLESINLSF-TGISDGSLRKLA 248
           G   +       N+E I       ++     +  
Sbjct: 529 GQDLMQMARPYWNIELIPSRRVPEVNQQGEIREM 562

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 6e-39
 Identities = 95/359 (26%), Positives = 167/359 (46%), Gaps = 28/359 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
              + L+       ++ + +T   +     L ++ KL +    ++   +  ++ L  LE 
Sbjct: 16  FPDADLAEGIRAVLQKAS-VT--DVVTQEELESITKLVV-AGEKVAS-IQGIEYLTNLEY 70

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           LN+   N ITD  + PLS L  L +L I  +K+TD  I+ L+ L  L  L L    ++  
Sbjct: 71  LNLNG-NQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD- 124

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  L+ L  ++ LNL       D     S +  L  L +  +++ D  +  +  LT+L 
Sbjct: 125 -ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLY 180

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL+L+   I  E +  L  L +L        Q+  + +  ++ +T L S+ +    I+D 
Sbjct: 181 SLSLNYNQI--EDISPLASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKITD- 235

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
            L  LA LS L  L +   QI+D  + A+  LT L  L++   +I+D     L N   L 
Sbjct: 236 -LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLN 290

Query: 303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           SL +    L +  ++ I  L++LT L LSQN ++TD  +  ++ L+ + S + +N  I 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 6e-39
 Identities = 85/335 (25%), Positives = 159/335 (47%), Gaps = 25/335 (7%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
           +     L +     ++  +    +D+     L ++  L ++  KV    I  ++ L  L 
Sbjct: 15  IFPDADLAEGIRAVLQKAS---VTDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLE 69

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            LNL G  +T   +  LS L  L  L +   +++D        + +L+ L L  + I+D 
Sbjct: 70  YLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD- 124

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            +  L  LT + SLNL +       L  L+ +  L  L +++++V    +  ++ LT+L 
Sbjct: 125 -ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV--KDVTPIANLTDLY 180

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           S++L++  I D  +  LA L+SL        QITD  +  + ++T L  L +   +ITD 
Sbjct: 181 SLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL 236

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
               L N   L  LEI    ++D  +  +KDL+ L +LN+  N  ++D  + +++ L+ L
Sbjct: 237 SP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQL 289

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            SL ++N+++ +  +  +  L NL +L L    +T
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 6e-19
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 17/216 (7%)

Query: 2   TENLSGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 59
             +LS LSN+T L+      + +    +   A L +L  L L    +I   +  L  L  
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVK--DVTPIANLTDLYSLSLNY-NQIE-DISPLASLTS 200

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L      + N IT  D+ P++ +T L SL+I  +K+TD  ++ L  L +LT L +    +
Sbjct: 201 LHYFTA-YVNQIT--DITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI 255

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           +   ++++  L  L  LN+   Q+SD      + +  L  L L  N++ +E +  + GLT
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           NL +L L    I D  +  L  L  +   + ++  +
Sbjct: 312 NLTTLFLSQNHITD--IRPLASLSKMDSADFANQVI 345

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  130 bits (329), Expect = 6e-34
 Identities = 86/417 (20%), Positives = 154/417 (36%), Gaps = 61/417 (14%)

Query: 35  NLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQ 89
           ++  LD++           L   L + + + +  C  +T++  K +S        L  L 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELN 62

Query: 90  ISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAACLDSLSAL----GSLFYLNLNR 140
           +  +++ D G+  + +GLQ    K+  L+L+ C +T A    LS+      +L  L+L+ 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 141 CQLSDDGCEKFSKIG-----SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGI 191
             L D G +   +        L+ L L +  ++          L+   + + L + +  I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 192 GDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----TNLESINLSFTGISDG 242
            + G+  L        C L+ L+L    V S   R L G+     +L  + L    + D 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 243 SLRKLA-----GLSSLKSLNLDARQITDTGLAALTSL----TGLTHLDLFGARITDSGAA 293
            + +L        S L++L +    IT  G   L  +      L  L L G  + D GA 
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 294 YL-----RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLELI 344
            L          L SL +     T A   H          L  L +S N  L D  +  +
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL 361

Query: 345 S-----GLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKVTANDIKRL 392
                   + L  L +++  ++ +        L    +LR L L +  +    I +L
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  121 bits (307), Expect = 6e-31
 Identities = 80/413 (19%), Positives = 147/413 (35%), Gaps = 66/413 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK 59
           L     L  L+  R+N +   G+      +      + KL L+ C     G   L   ++
Sbjct: 52  LRVNPALAELNL-RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 60  ----LESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAY----LKGL 106
               L+ L++   N + D+ ++ L          L+ LQ+    ++ +        L+  
Sbjct: 111 TLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169

Query: 107 QKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKI----GSL 157
                L +    +  A +  L          L  L L  C ++ D C     I     SL
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 158 KVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCL 208
           + L LG N++ D  +  L        + L +L +  CGI  +G  +L        +LK L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 209 ELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLD 259
            L+  ++G  G R L          LES+ +     +       + +      L  L + 
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 260 ARQITDTGLAAL-----TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGG 310
             ++ D G+  L        + L  L L    ++DS  +     L    +LR L++    
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 311 LTDAGVKHIKDL-----SSLTLLNLSQNCNLTDKTLELISGL----TGLVSLN 354
           L DAG+  + +        L  L L  +   +++  + +  L      L  ++
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLY-DIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  115 bits (289), Expect = 2e-28
 Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 47/332 (14%)

Query: 107 QKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLN 161
             +  L+++   ++ A    L   L     + L+ C L++  C+  S       +L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 162 LGFNEITDECLVHL-KGL----TNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSD 212
           L  NE+ D  +  + +GL      ++ L+L +C +   G       L  L  L+ L LSD
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 213 TQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQI 263
             +G +GL+ L          LE + L +  +S  S   LA         K L +    I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 264 TDTGLAAL-----TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDA 314
            + G+  L      S   L  L L    +T          + +  +LR L +    L D 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 315 GVKHI-----KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLNVSNSRITSAGL 365
           G+  +        S L  L +   C +T K    +         L  L+++ + +   G 
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 366 RHL-----KPLKNLRSLTLESCKVTANDIKRL 392
           R L     +P   L SL ++SC  TA      
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  127 bits (320), Expect = 3e-32
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 18/260 (6%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
             + P           +    VTD        L  +  +      + +  +  +  L ++
Sbjct: 12  KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNV 67

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L LN  +L+D   +  + + +L  L L  N+I D  L  LK L  L+SL+L+  GI D
Sbjct: 68  TKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD 123

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L  L  L+ L L + ++  + +  LS LT L++++L    ISD  +  LAGL+ L
Sbjct: 124 --INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKL 177

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
           ++L L    I+D  L AL  L  L  L+LF     +    +  N     +++   G  + 
Sbjct: 178 QNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--SL 233

Query: 314 AGVKHIKDLSSLTLLNLSQN 333
              + I D       N+  +
Sbjct: 234 VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  112 bits (281), Expect = 4e-27
 Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 20/243 (8%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 78
           +  I    +         +K +L++   +    V    L  ++ +     + I    ++ 
Sbjct: 8   STPIKQ--IFPDDAFAETIKDNLKK-KSV-TDAVTQNELNSIDQIIANNSD-IK--SVQG 60

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           +  L N+  L ++ +K+TD  I  L  L+ L  L L+   +    L SL  L  L  L+L
Sbjct: 61  IQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSL 116

Query: 139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 198
               +SD        +  L+ L LG N+ITD  +  L  LT L++L+L+   I D  +V 
Sbjct: 117 EHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVP 170

Query: 199 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-N 257
           L GL  L+ L LS   +    LR L+GL NL+ + L      +  +   + L    ++ N
Sbjct: 171 LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 258 LDA 260
            D 
Sbjct: 229 TDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  103 bits (258), Expect = 4e-24
 Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 45/244 (18%)

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           +         I    +            NL    + D   V    L ++  +  +++ + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
           S  ++ +  L N+  + L+   ++D  ++ L  L +L  L LD  +I D  L++L  L  
Sbjct: 57  S--VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKK 110

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  L L    I+D                          +  +  L  L  L L  N  +
Sbjct: 111 LKSLSLEHNGISD--------------------------INGLVHLPQLESLYLGNN-KI 143

Query: 337 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 396
           TD  + ++S LT L +L++ +++I+   +  L  L  L++L L    ++  D++ L    
Sbjct: 144 TD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAG-- 195

Query: 397 LPNL 400
           L NL
Sbjct: 196 LKNL 199

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  103 bits (257), Expect = 5e-24
 Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 18/234 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
              + L+++  +    ++ I +  ++    L N+ KL L    ++   +  L  L  L  
Sbjct: 37  VTQNELNSIDQIIANNSD-IKS--VQGIQYLPNVTKLFLNG-NKLTD-IKPLTNLKNLGW 91

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +   N I D  +  L  L  LKSL +  + ++D  I  L  L +L  L L    +T  
Sbjct: 92  LFLD-ENKIKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT-- 144

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  LS L  L  L+L   Q+SD      + +  L+ L L  N I+D  L  L GL NL+
Sbjct: 145 DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLD 200

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
            L L S    ++ + + + L     ++ +D  + +     +S   + E  N+ +
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKW 252

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (320), Expect = 6e-32
 Identities = 86/444 (19%), Positives = 146/444 (32%), Gaps = 50/444 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKL 60
            N +  S LTSL    N  I+    +    L  L  L+L+    +++            L
Sbjct: 43  ANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNL 99

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
             L++   N I      P     NL +L +S + ++ + +     L+ L  L L    + 
Sbjct: 100 TELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 121 AACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHL 175
           A   + L      SL  L L+  Q+ +     F  IG L  L L   ++     E L   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
              T++ +L+L +  +         GL   NL  L+LS   +   G    + L  LE   
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLD---------ARQITDTGLAALTSLTGLTHLDLFG 284
           L +  I       L GL +++ LNL             +      +   L  L HL++  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 285 ARITDSGAAYLRNFKNLRSL----------EICGGGLTDAGVKHIK-------------- 320
             I    +       NL+ L           +            +               
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 321 ----DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 376
                L  L +L+L  N    + T +   GL  +  + +S ++           + +L+ 
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 377 LTLESCKVTANDIKRLQSRDLPNL 400
           L L    +   D      + L NL
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (315), Expect = 2e-31
 Identities = 84/414 (20%), Positives = 159/414 (38%), Gaps = 26/414 (6%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 65
            +N+T L+   N  +       F     L  LD+     +++   L   + L  L+ LN+
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNL 80

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
           +    ++    K  +  TNL  L +  + +           + L  L+L    +++  L 
Sbjct: 81  QHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLES 183
           +   L +L  L L+  ++     E+       SLK L L  N+I +        +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 184 LNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTG 238
           L L++  +G    E L       +++ L LS++Q+ ++      GL  TNL  ++LS+  
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL---------FGARITD 289
           ++       A L  L+   L+   I      +L  L  + +L+L           A +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGL- 347
                 +  K L  L +    +          L +L  L+LS +  +L   T E    L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 348 -TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            + L  LN++ ++I+         L +L  L L   ++   ++   + R L N+
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (259), Expect = 5e-24
 Identities = 69/361 (19%), Positives = 121/361 (33%), Gaps = 39/361 (10%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           P    TN+  L ++ +++     A      +LT L++    ++    +    L  L  LN
Sbjct: 20  PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L   +LS    + F+   +L  L+L  N I            NL +L+L   G+    L 
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 198 NLTGLCNLKCLELSD-----------TQVGSSGLRHL---------------SGLTNLES 231
               L NL+ L LS+               +S L+ L                 +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 232 INLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL--TGLTHLDLFGAR 286
           + L+           L      +S+++L+L   Q++ T       L  T LT LDL    
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--------CNLTD 338
           +   G         L    +    +       +  L ++  LNL ++         +L  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 398
                   L  L  LN+ ++ I          L NL+ L+L +   +   +       L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 399 N 399
           +
Sbjct: 380 H 380

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 64/328 (19%), Positives = 122/328 (37%), Gaps = 29/328 (8%)

Query: 5   LSGLSNLTSLSFRRN--------NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNL 54
           L GL N+  L+ +R+         ++      +F  L  L  L++E      I   +   
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--F 349

Query: 55  KGLMKLESLNIKWCNCITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKGLQKLT 110
            GL+ L+ L++   +  +   +   +      + L  L ++ +K++         L  L 
Sbjct: 350 TGLINLKYLSLSN-SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 111 LLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT- 168
           +L+L    +           L ++F + L+  +        F+ + SL+ L L    +  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 169 -DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--------VGSSG 219
            D      + L NL  L+L +  I +     L GL  L+ L+L                 
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +  L GL++L  +NL   G  +  +     L  LK ++L    +     +   +   L  
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 280 LDLFGARITD-SGAAYLRNFKNLRSLEI 306
           L+L    IT      +   F+NL  L++
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 9/254 (3%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           S +V +    ++T    V     TN+  LNL    +      N T    L  L++    +
Sbjct: 5   SHEVADCSHLKLTQ---VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
                     L  L+ +NL    +S  S +  A  ++L  L+L +  I            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 333
            L  LDL    ++ +        +NL+ L +    +    +    I   SSL  L LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 334 CNLTDKTLELISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSLTLESCKVTANDIK 390
             + + +      +  L  L ++N ++       L       ++R+L+L + +++     
Sbjct: 182 -QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 391 RLQSRDLPNLVSFR 404
                   NL    
Sbjct: 241 TFLGLKWTNLTMLD 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  118 bits (298), Expect = 1e-30
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 21/291 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           + + P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNL 65

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L L   Q++D        +  +  L L  N + +  +  + GL ++++L+L S  I D
Sbjct: 66  IGLELKDNQITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +  L GL NL+ L L   Q+  + +  L+GLTNL+ +++    +SD  L  LA LS L
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKL 175

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 313
            +L  D  +I+D  ++ L SL  L  + L   +I+D     L N  NL  + +    +T+
Sbjct: 176 TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 314 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 364
              + +   ++L + N+ +  +        IS      S N++ +  +   
Sbjct: 232 ---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  112 bits (281), Expect = 3e-28
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 19/247 (7%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           +   +  G + +TD   V    L  + +L+    G+    +  +  L NL  LEL D Q+
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
             + L  L  LT +  + LS   + +  +  +AGL S+K+L+L + QITD  +  L  L+
Sbjct: 76  --TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLS 129

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L  L L   +IT+     L    NL+ L I    ++D  +  + +LS LT L    N  
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDN-K 184

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
           ++D  +  ++ L  L+ +++ N++I+   +  L    NL  +TL +  +T   +    + 
Sbjct: 185 ISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 396 DLPNLVS 402
            +PN+V 
Sbjct: 241 VVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (275), Expect = 2e-27
 Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 19/249 (7%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
               L     +     N    +D    + L  + +L    + VT   I  ++ L  L  L
Sbjct: 14  PDPALANAIKIAAGKSN---VTDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGL 68

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
            L+   +T   L  L  L  +  L L+   L +      + + S+K L+L   +ITD  +
Sbjct: 69  ELKDNQITD--LAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--V 122

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             L GL+NL+ L LD   I +  +  L GL NL+ L + + QV  S L  L+ L+ L ++
Sbjct: 123 TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTL 178

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
                 ISD  +  LA L +L  ++L   QI+D  ++ L + + L  + L    IT+   
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPV 234

Query: 293 AYLRNFKNL 301
            Y  N    
Sbjct: 235 FYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.3 bits (227), Expect = 6e-21
 Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 18/231 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
              + L  +T+LS      +T   ++    L NL+ L+L +  +I   L  LK L K+  
Sbjct: 35  VTQADLDGITTLSAFGTG-VTT--IEGVQYLNNLIGLEL-KDNQITD-LAPLKNLTKITE 89

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +   N + +  +  ++GL ++K+L ++ +++TD  +  L GL  L +L L+   +T  
Sbjct: 90  LEL-SGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN- 143

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  L+ L +L YL++   Q+SD      + +  L  L    N+I+D  +  L  L NL 
Sbjct: 144 -ISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD--ISPLASLPNLI 198

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            ++L +  I D  +  L    NL  + L++  + +  + + + L     + 
Sbjct: 199 EVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
             L+GL+NL  LS   N  ++   +   A L  L  L  +        + ++  L  L +
Sbjct: 145 SPLAGLTNLQYLSIG-NAQVS--DLTPLANLSKLTTLKAD-----DNKISDISPLASLPN 196

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCPVT 120
           L          SD+ PL+  +NL  + ++   +T+  + Y   L     +    G P+ 
Sbjct: 197 LIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (305), Expect = 6e-30
 Identities = 81/441 (18%), Positives = 148/441 (33%), Gaps = 46/441 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
              L  L  L             +AF  L NL  LDL       +H      +GL  L  
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA--FQGLFHLFE 101

Query: 63  LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPV 119
           L + +   ++D+ +K      L  L  L +S +++    +      L  L  ++     +
Sbjct: 102 LRLYF-CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 120 TAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIG------SLKVLNLGFNEITDE- 170
              C   L  L   +L + +L    L       + K         L++L++  N  T + 
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 171 -----------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGS 217
                          L    ++         I D       GL   +++ L+LS   V S
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 277
              R    L +L+ +NL++  I+  +     GL +L+ LNL    + +   +    L  +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 278 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLS------------- 323
            ++DL    I        +  + L++L++    LT    +  I D+              
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 324 -SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLES 381
            +  L++LS+N       L  +  +  L  L ++ +R +S           +L  L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 382 CKVTANDIKRLQSRDLPNLVS 402
             +       L       L  
Sbjct: 461 NMLQLAWETELCWDVFEGLSH 481

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (287), Expect = 1e-27
 Identities = 69/418 (16%), Positives = 147/418 (35%), Gaps = 36/418 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
              L  LT L   +N   +     +F  L +L  +D        +    +       L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-----------------CSKVTDSGIAYLKG 105
            ++   +  +   +     +   +++ +                   + ++ S    L  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
              +         +     ++ + L   S+ +L+L+   +       F  +  LKVLNL 
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
           +N+I         GL NL+ LNL    +G+    N  GL  +  ++L    +     +  
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
             L  L++++L    ++      +  + S+  + L   ++       LT       + L 
Sbjct: 359 KFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLS 409

Query: 284 GARITD-SGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQN----CNLT 337
             R+ +     +L    +L+ L +     +  +G +   +  SL  L L +N       T
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 338 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 395
           +   ++  GL+ L  L ++++ + S        L  LR L+L S ++T      L + 
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (281), Expect = 7e-27
 Identities = 76/402 (18%), Positives = 132/402 (32%), Gaps = 44/402 (10%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
             L+    L    N  I      +F  L  L  L+L                        
Sbjct: 21  QVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGS---------------------- 57

Query: 66  KWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
                   + D +    L NL+ L +  SK+        +GL  L  L L  C ++ A L
Sbjct: 58  ---QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 125 --DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-- 179
                  L +L  L+L++ Q+        F K+ SLK ++   N+I   C   L+ L   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 180 NLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            L   +L +  +     +     +   + + L    V  +G         ++        
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW-------TVDITGNFSNA 227

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL--TGLTHLDLFGARITDSGAAYLR 296
           IS      L     +         I D        L  + + HLDL    +    +    
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
             K+L+ L +    +     +    L +L +LNLS N  L +       GL  +  +++ 
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQ 346

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDL 397
            + I     +  K L+ L++L L    +T  + I  +    L
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.9 bits (249), Expect = 7e-23
 Identities = 76/394 (19%), Positives = 140/394 (35%), Gaps = 29/394 (7%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERC--TRIHGGLVNLKGLMK 59
           +L    ++    F  +N I       FAGL   ++  LDL       ++  +   + L  
Sbjct: 235 SLILAHHIMGAGFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV--FETLKD 291

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ LN+ + N I     +   GL NL+ L +S + + +   +   GL K+  ++L+   +
Sbjct: 292 LKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
                 +   L  L  L+L    L+         I S+  + L  N++       L  + 
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-----TLPKIN 400

Query: 180 -NLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSF 236
                ++L    +   + L  L  + +L+ L L+  +  S       S   +LE + L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 237 TGISDGSLRKL-----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
             +      +L      GLS L+ L L+   +        + LT L  L L   R+T   
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGL 350
              L    NL  L+I    L          LS L + +    C     T    ++     
Sbjct: 521 HNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVT 578

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 384
           ++   ++             L +L +   +  +V
Sbjct: 579 IAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 78.7 bits (194), Expect = 8e-16
 Identities = 56/301 (18%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNL 186
             L +   L L+   +       F  +  L++L LG             + L NL  L+L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINLSFTGISDGSL 244
            S  I         GL +L  L L    +  + L+      L  L  ++LS   I    L
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 245 RK-LAGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL------ 295
                 L+SLKS++  + QI       L  L G  L+   L    +    +         
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 296 ------------RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
                        N   +         ++ +    +     +       + N+ D     
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH-NIKDPDQNT 259

Query: 344 ISGL--TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
            +GL  + +  L++S+  + S   R  + LK+L+ L L       N I ++       L 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-----NKINKIADEAFYGLD 314

Query: 402 S 402
           +
Sbjct: 315 N 315

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.6 bits (186), Expect = 7e-15
 Identities = 51/273 (18%), Positives = 84/273 (30%), Gaps = 26/273 (9%)

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLE 209
              + + + L L FN I          L  L+ L L S              L NL+ L+
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDARQITDTG 267
           L  +++         GL +L  + L F G+SD  L+      L +L  L+L   QI    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 268 L-AALTSLTGLTHLDLFGARITDSGAAYLRNF--KNLRSLEICGGGLTD------AGVKH 318
           L  +   L  L  +D    +I       L     K L    +    L            +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 319 IKDLSSLTLLNLSQNCNLTDKTLELISGLTG-----------LVSLNVSNSRITSAGLRH 367
                 L +L++S N    D T    + ++            ++        I       
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP---D 256

Query: 368 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
                 L   ++    ++   +  L SR    L
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 26/208 (12%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGL--- 57
            N  GL  +  +  ++N+ I     + F  L  L  LDL     T IH  + ++  +   
Sbjct: 332 SNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF-IPSIPDIFLS 389

Query: 58  -----------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKG 105
                      +    +++          +  L  + +L+ L ++ ++ +  SG      
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 106 LQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
              L  L L          T  C D    L  L  L LN   L+      FS + +L+ L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDS 188
           +L  N +T   L H     NLE L++  
Sbjct: 510 SLNSNRLT--VLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 14/170 (8%)

Query: 239 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAA 293
           I+      L      L++ + L L    I     ++   L  L  L+L       +    
Sbjct: 8   IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLV 351
             RN  NLR L++    +        + L  L  L L     L+D  L+      L  L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALT 126

Query: 352 SLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            L++S ++I S  L      L +L+S+   S     N I  +   +L  L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-----NQIFLVCEHELEPL 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (300), Expect = 2e-29
 Identities = 86/433 (19%), Positives = 143/433 (33%), Gaps = 43/433 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LSG   L  L F +   I++           L  L L         L       KL+ L+
Sbjct: 101 LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 65  IKWCN--CITDSDMKPLSGLTNLK---------------------------SLQISCSKV 95
            +      ++  DM  L   TNL                              Q      
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 96  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 155
                + ++ L   T  +++   ++ A  + L  + S+  +NL +    +     F    
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFS 278

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQ 214
            L+ L+L    ++ E    L GL+ L+ L L +    +   ++ +   +L  L +   T+
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDARQITDTGLAALT 272
               G   L  L NL  ++LS   I         L  LS L+SLNL   +       A  
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 273 SLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
               L  LDL   R+    A +  +N   L+ L +    L  +  +    L +L  LNL 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 332 QN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 389
            N       +    +  L  L  L +S   ++S        LK +  + L       N +
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH-----NRL 512

Query: 390 KRLQSRDLPNLVS 402
                  L +L  
Sbjct: 513 TSSSIEALSHLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (296), Expect = 5e-29
 Identities = 88/410 (21%), Positives = 153/410 (37%), Gaps = 21/410 (5%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKL 60
              S L NLT L   R   I       F     L  L L       +      L G   L
Sbjct: 51  TTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKAL 107

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           + L       I+  D  PL     L+SL +  + ++   +      +KL +L+ +   + 
Sbjct: 108 KHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 121 AACLDSLSALGSL--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG- 177
               + +S+L       LNLN   ++      F      + LN G  +        LK  
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNS 225

Query: 178 -LTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
            + +L     +     D       GLC  +++ + L      +         + L+ ++L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 293
           + T +S+     L GLS+LK L L A +  +    + ++   LTHL + G  +  + G  
Sbjct: 286 TATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
            L N +NLR L++    +  +   +  +++LS L  LNLS N        E       L 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLE 403

Query: 352 SLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            L+++ +R+     +   + L  L+ L L    +  +  +      LP L
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--LPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (291), Expect = 2e-28
 Identities = 84/391 (21%), Positives = 139/391 (35%), Gaps = 17/391 (4%)

Query: 3   ENLSGLSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG--LMK 59
           E++S L   T+LS     N I      AF        L+      +      LK   +  
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 60  LESLNIKWCNCITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           L     +  +   D       GL   +++S+ +      +           L  L+L   
Sbjct: 230 LWLGTFEDMD-DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLK 176
            ++      L  L +L  L L+  +  +      S   SL  L++  N    +     L+
Sbjct: 289 HLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 177 GLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
            L NL  L+L    I      N  L  L +L+ L LS  +  S           LE ++L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 235 SFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           +FT +    +      L  LK LNL    +  +       L  L HL+L G         
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 294 YLRNFKNLRSLE---ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
              + + L  LE   +    L+         L  +  ++LS N  LT  ++E +S L G+
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI 526

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
             LN++++ I+      L  L   R++ L  
Sbjct: 527 Y-LNLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (291), Expect = 3e-28
 Identities = 89/403 (22%), Positives = 142/403 (35%), Gaps = 17/403 (4%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 65
            ++   L F  N  +       F+ LINL  LDL RC    IH      +   +L++L +
Sbjct: 32  PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVL 88

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
              N +       LSG   LK L    + ++      L   + L  L L    +++  L 
Sbjct: 89  TA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITDECLVHLKGLTNLES 183
                  L  L+     +     E  S +       LNL  N+I              +S
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQS 206

Query: 184 LNLDSCGIGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGI 239
           LN             L    + +L      D            GL   ++ESINL     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
            + S       S L+ L+L A  +++   + L  L+ L  L L   +  +       NF 
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 300 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGLVSLNVSN 357
           +L  L I G     + G   +++L +L  L+LS +    +D     +  L+ L SLN+S 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           +   S      K    L  L L   ++   D +     +L  L
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLHLL 427

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (268), Expect = 2e-25
 Identities = 71/368 (19%), Positives = 146/368 (39%), Gaps = 14/368 (3%)

Query: 4   NLSGLSNLTSLSFRRN-NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKL 60
                +   SL+F    N +        + + +L     E      I   +      M +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           ES+N++  +   +         + L+ L ++ + ++    + L GL  L  L L      
Sbjct: 257 ESINLQ-KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 121 AACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKG 177
             C  S S   SL +L++    +  + G      + +L+ L+L  ++I   D C + L+ 
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-LSGLTNLESINLSF 236
           L++L+SLNL                  L+ L+L+ T++     +     L  L+ +NLS 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGLTHLDLFGARITDSGAA 293
           + +   S +   GL +L+ LNL              +L +L  L  L L    ++     
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
              + K +  +++    LT + ++ +  L  +  LNL+ N +++     L+  L+   ++
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASN-HISIILPSLLPILSQQRTI 552

Query: 354 NVSNSRIT 361
           N+  + + 
Sbjct: 553 NLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 49/249 (19%), Positives = 76/249 (30%), Gaps = 5/249 (2%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           S + L   FN +          L NL  L+L  C I             L  L L+   +
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
                  LSG   L+ +    TGIS      L    +L+SL L +  I+   L       
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNC 334
            L  LD     I       + + +   +L +   G   AG+     D +    LN     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 335 NLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
           NL      L  S +  L      +           + L     +++ES  +  +    + 
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE---MSVESINLQKHYFFNIS 270

Query: 394 SRDLPNLVS 402
           S        
Sbjct: 271 SNTFHCFSG 279

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 9/172 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
                 L  L               F  L  L  L+L           L    GL  L+ 
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL--FDGLPALQH 453

Query: 63  LNIKWCNCITDSDMKP---LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           LN++  N     +++    L  L  L+ L +S   ++         L+ +  ++L    +
Sbjct: 454 LNLQG-NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
           T++ +++LS L  + YLNL    +S         +   + +NL  N +   C
Sbjct: 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (285), Expect = 2e-27
 Identities = 75/395 (18%), Positives = 130/395 (32%), Gaps = 27/395 (6%)

Query: 3   ENLSGLSNLTSLSFR---RNNAITAQGMKAFAGLINLVKLDLERCTRI-------HGGLV 52
            +L  L     ++       N I     +AF G+  L +L L                L 
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLT 110
            L    +L     K    +   +   + GL ++   +   +   D          L  ++
Sbjct: 230 GLHVH-RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
            ++L G  +    L+ +        L++ RCQL          +  LK L L  N+ +  
Sbjct: 289 AMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSI- 342

Query: 171 CLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
                  L +L  L+L    +        +  G  +L+ L+LS          +  GL  
Sbjct: 343 -SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEE 400

Query: 229 LESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           L+ ++   + +           L  L  L++               LT L  L + G   
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 288 TDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
            D+  +    N  NL  L++    L          L  L LLN+S N NL        + 
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQ 519

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L  L +L+ S +RI ++        K+L    L +
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (277), Expect = 2e-26
 Identities = 81/415 (19%), Positives = 137/415 (33%), Gaps = 33/415 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGL-MKL 60
           +  L  L  L+   N   + +    F+ L NLV +DL       I    L  L+      
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEG 116
            SL++     I     +   G+  L  L +      S +  + +  L GL    L+  E 
Sbjct: 184 LSLDMSLNP-IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 117 CPVTAACLDSLSALGSLF-----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
                  +   S +  L         L       D   KF  + ++  ++L    I    
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-- 299

Query: 172 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
           L  +      +SL++  C +          L  LK L L+  +   S       L +L  
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSY 354

Query: 232 INLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           ++LS    +     S   L G +SL+ L+L          A    L  L HLD   + + 
Sbjct: 355 LDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLK 412

Query: 289 DSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
                    + + L  L+I               L+SL  L ++ N    +    + +  
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           T L  L++S  ++          L  L+ L +       N++  L S     L S
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH-----NNLLFLDSSHYNQLYS 522

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 3e-22
 Identities = 82/435 (18%), Positives = 146/435 (33%), Gaps = 46/435 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKL 60
            + S  S L  L   R   I     KA+ GL +L  L L          G     GL  L
Sbjct: 50  YSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGS--FSGLTSL 106

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPV 119
           E+L       +   +  P+  L  LK L ++ + +    + AY   L  L  ++L    +
Sbjct: 107 ENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 120 TAACLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VH 174
               ++ L  L         L+++   +     + F  I  L  L L  N  +   +   
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTC 224

Query: 175 LKGLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLELSDT--QVGSSGLRHLSGL 226
           L+ L  L    L      DE  +       + GLC++   E   T     S  +     L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-------------------TG 267
            N+ +++L+   I    L  +      +SL++   Q+                     + 
Sbjct: 285 ANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSL 325
                +L  L++LDL    ++ SG     +    +LR L++   G       +   L  L
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEEL 401

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L+   +             L  L+ L++S +            L +L +L +      
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 386 ANDIKRLQSRDLPNL 400
            N +  + + +  NL
Sbjct: 462 DNTLSNVFA-NTTNL 475

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 17/339 (5%)

Query: 3   ENLSGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVK--LDLERCTRIHGGLVNLKGLM 58
           +NL+GL    L    F+    +         GL ++      L         +V    L 
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            + ++++     I    ++ +      +SL I   ++       L  L+ LTL   +G  
Sbjct: 286 NVSAMSLAG-VSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG-- 340

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLK 176
              +      AL SL YL+L+R  LS  GC  +S +G  SL+ L+L FN        +  
Sbjct: 341 ---SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFM 396

Query: 177 GLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           GL  L+ L+     +           L  L  L++S T           GLT+L ++ ++
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 236 FTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
                D +L    A  ++L  L+L   Q+         +L  L  L++    +    +++
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
                +L +L+     +  +         SL   NL+ N
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 82/435 (18%), Positives = 141/435 (32%), Gaps = 58/435 (13%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIH----GGLVNLK------- 55
           S+  ++    N  +      +F+    L  LDL RC    I      GL +L        
Sbjct: 32  SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 56  -----------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYL 103
                      GL  LE+L       +   +  P+  L  LK L ++ + +    + AY 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 104 KGLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGSLKV 159
             L  L  ++L    +    ++ L  L         L+++   +     + F  I  L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHE 208

Query: 160 LNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLELSD 212
           L L  N  +   +   L+ L  L    L      DE  +       + GLC++   E   
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 213 T--QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 270
           T     S  +     L N+ +++L+   I    L  +      +SL++   Q+       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQF---P 323

Query: 271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSSLTLL 328
              L  L  L L   + + S         +L  L++    L+            +SL  L
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTAN 387
           +LS N      +     GL  L  L+  +S +           L+ L  L +        
Sbjct: 382 DLSFN-GAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY-----T 434

Query: 388 DIKRLQSRDLPNLVS 402
           + K         L S
Sbjct: 435 NTKIDFDGIFLGLTS 449

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 5/214 (2%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMK 59
           +     L +L+ L   RN  ++  G  +++  G  +L  LDL           N  GL +
Sbjct: 343 SFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEE 400

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L+ +       ++      L  L  L IS +           GL  L  L + G   
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 120 TAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
                 +  +   +L +L+L++CQL       F  +  L++LN+  N +      H   L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            +L +L+     I     +      +L    L++
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 2e-27
 Identities = 72/282 (25%), Positives = 109/282 (38%), Gaps = 6/282 (2%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
            +   +L  L    N  ++A    AF  L NL  L L       I  G+    GL  L  
Sbjct: 52  FASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV--FTGLSNLTK 108

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L+I   N I          L NLKSL++  + +         GL  L  L LE C +T+ 
Sbjct: 109 LDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             ++LS L  L  L L    ++      F ++  LKVL +      D    +     NL 
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
           SL++  C +     + +  L  L+ L LS   + +     L  L  L+ I L    ++  
Sbjct: 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
                 GL+ L+ LN+   Q+T    +   S+  L  L L  
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (281), Expect = 2e-27
 Identities = 69/300 (23%), Positives = 112/300 (37%), Gaps = 6/300 (2%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
           +    L   +N  I       FA   +L +L+L     + +  G      L  L +L ++
Sbjct: 32  TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGA--FNNLFNLRTLGLR 88

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
             N +    +   +GL+NL  L IS +K+        + L  L  L +    +      +
Sbjct: 89  S-NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
            S L SL  L L +C L+    E  S +  L VL L    I        K L  L+ L +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
                 D    N     NL  L ++   + +     +  L  L  +NLS+  IS      
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           L  L  L+ + L   Q+      A   L  L  L++ G ++T    +   +  NL +L +
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 4e-27
 Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 1/289 (0%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I   +    +   +L+ L+++ + V+         L  L  L L    +    L   +
Sbjct: 42  NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L +L  L+++  ++       F  + +LK L +G N++         GL +LE L L+ 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 248
           C +       L+ L  L  L L    + +        L  L+ + +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
              +L SL++    +T     A+  L  L  L+L    I+    + L     L+ +++ G
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
           G L        + L+ L +LN+S N  LT     +   +  L +L + +
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 5e-26
 Identities = 66/278 (23%), Positives = 104/278 (37%), Gaps = 1/278 (0%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
             LL+L    +     D  ++   L  L LN   +S      F+ + +L+ L L  N + 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
              L    GL+NL  L++    I          L NLK LE+ D  +     R  SGL +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
           LE + L    ++      L+ L  L  L L    I      +   L  L  L++      
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
           D+         NL SL I    LT      ++ L  L  LNLS N  ++     ++  L 
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELL 272

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            L  + +   ++        + L  LR L +   ++T 
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (260), Expect = 1e-24
 Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 6/270 (2%)

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L+L + ++     ++F+    L+ L L  N ++         L NL +L L S  +   
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 254
            L   TGL NL  L++S+ ++          L NL+S+ +    +   S R  +GL+SL+
Sbjct: 96  PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 314
            L L+   +T     AL+ L GL  L L    I        +    L+ LEI      D 
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 374
              +     +LT L+++   NLT      +  L  L  LN+S + I++     L  L  L
Sbjct: 216 MTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 375 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
           + + L         +  ++      L   R
Sbjct: 275 QEIQLVG-----GQLAVVEPYAFRGLNYLR 299

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 1/182 (0%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
             + L+L   ++ +      +   +LE + L+   +S         L +L++L L + ++
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
               L   T L+ LT LD+   +I        ++  NL+SLE+    L     +    L+
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
           SL  L L +  NLT    E +S L GL+ L + +  I +      K L  L+ L +    
Sbjct: 153 SLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 384 VT 385
             
Sbjct: 212 YL 213

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           T    ++L    I   +  + A    L+ L L+   ++     A  +L  L  L L   R
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           +            NL  L+I    +        +DL +L  L +  N +L   +    SG
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG 150

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS---RDLPNL 400
           L  L  L +    +TS     L  L  L  L L        +I  ++    + L  L
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-----LNINAIRDYSFKRLYRL 202

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           +  + L+L   +I         S   L  L+L    ++        N  NLR+L +    
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           L    +     LS+LT L++S+N  +      +   L  L SL V ++ +     R    
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 371 LKNLRSLTLESCKVTANDIKRLQS---RDLPNLVSFR 404
           L +L  LTLE       ++  + +     L  L+  R
Sbjct: 151 LNSLEQLTLEK-----CNLTSIPTEALSHLHGLIVLR 182

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 2/167 (1%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           LS L  L  L  R  N I A    +F  L  L  L++     +     N    + L SL+
Sbjct: 172 LSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           I  CN +T      +  L  L+ L +S + ++    + L  L +L  + L G  +     
Sbjct: 231 ITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
            +   L  L  LN++  QL+      F  +G+L+ L L  N +  +C
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLM 58
           MT N     NLTSLS    N +TA    A   L+ L  L+L     + I G +  L  L+
Sbjct: 216 MTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM--LHELL 272

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           +L+ + +     +   +     GL  L+ L +S +++T    +    +  L  L L+  P
Sbjct: 273 RLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  108 bits (272), Expect = 7e-27
 Identities = 60/305 (19%), Positives = 104/305 (34%), Gaps = 19/305 (6%)

Query: 41  LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVT 96
           L     +    V  K   +L S    W                 L S  +          
Sbjct: 24  LCLPELLKVSGVC-KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82

Query: 97  DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIG 155
           D  +A      ++  ++L    +  + L  + S    L  L+L   +LSD      +K  
Sbjct: 83  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 156 SLKVLNL-GFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC--NLKCLEL 210
           +L  LNL G +  ++  L  L    + L+ LNL  C    ++ +          +  L L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202

Query: 211 SD--TQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 265
           S     +  S L  L     NL  ++LS    + +   ++   L+ L+ L+L     I  
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
             L  L  +  L  L +FG  + D     L+  + L  L+I     T      I +  + 
Sbjct: 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQ 319

Query: 326 TLLNL 330
            +  +
Sbjct: 320 EIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  106 bits (267), Expect = 3e-26
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 15/260 (5%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L    L  D   +    G +           D+ L        ++ ++L +  I    
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 196 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSS 252
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS  +G S+ +L+ L    S 
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 253 LKSLNL-DARQITDTGLAALTS--LTGLTHLDLFG--ARITDSGAAYL-RNFKNLRSLEI 306
           L  LNL      T+  +    +     +T L+L G    +  S  + L R   NL  L++
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229

Query: 307 CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 288

Query: 366 RHLKPLKNLRSLTLESCKVT 385
           + L   + L  L +     T
Sbjct: 289 QLL--KEALPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 98.4 bits (245), Expect = 4e-23
 Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 13/235 (5%)

Query: 7   GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 66
               +  +    +    +      +    L  L LE        +  L     L  LN+ 
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 67  WCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYL--KGLQKLTLLNLEGCP--VT 120
            C+  ++  ++ L S  + L  L +S C   T+  +        + +T LNL G    + 
Sbjct: 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210

Query: 121 AACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKG 177
            + L +L     +L +L+L+    L +D  ++F ++  L+ L+L    +I  E L+ L  
Sbjct: 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLC---NLKCLELSDTQVGSSGLRHLSGLTNL 229
           +  L++L +    + D  L  L        + C   +     + G +    +  +
Sbjct: 271 IPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 64
               NL  L    +  +     + F  L  L  L L RC  I    L+ L  +  L++L 
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 114
           +     + D  ++ L     L  LQI+CS  T      +   +   +  +
Sbjct: 279 V--FGIVPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGL 365
           C     D  +        +  ++LS N  +   TL  ++S  + L +L++   R++   +
Sbjct: 77  CPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135

Query: 366 RHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 400
             L    NL  L L  C   +   ++ L S     L
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRL 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  101 bits (255), Expect = 1e-25
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 15/190 (7%)

Query: 101 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
           +  K      L       +T A ++SL+      Y+ L    ++D          ++K L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLT------YITLANINVTD--LTGIEYAHNIKDL 71

Query: 161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 220
            +     T+     + GL+NLE L +    +  + + NL+GL +L  L++S +    S L
Sbjct: 72  TINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 221 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
             ++ L  + SI+LS+   I+D  +  L  L  LKSLN+    + D     +     L  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQ 185

Query: 280 LDLFGARITD 289
           L  F   I  
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 98.9 bits (247), Expect = 1e-24
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           + + +L  I L+   ++D  L  +    ++K L ++    T+     ++ L+ L  L + 
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 343
           G  +T      L    +L  L+I      D+ +  I  L  +  ++LS N  +TD  +  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMP 154

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +  L  L SLN+    +     R ++    L  L   S  + 
Sbjct: 155 LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 89
            A + +L  + L         + +L G+    ++     N I  ++  P+SGL+NL+ L+
Sbjct: 40  EAQMNSLTYITLANI-----NVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLR 94

Query: 90  ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 149
           I    VT   I  L GL  LTLL++       + L  ++ L  +  ++L+      D   
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM 153

Query: 150 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
               +  LK LN+ F+ + D     ++    L  L   S  IG +
Sbjct: 154 PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
             +SGLSNL  L     + +T+  +   +GL +L  LD+         L  +  L K+ S
Sbjct: 82  NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +++ +   IT  D+ PL  L  LKSL I    V D     ++   KL  L      + 
Sbjct: 141 IDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
              +L  + +    +TD  +  I+   ++  L ++   + T+     ISGL+ L  L + 
Sbjct: 42  QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIM 96

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
              +TS  + +L  L +L  L +       + + ++    LP + S
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNS 140

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  105 bits (263), Expect = 2e-25
 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 50/323 (15%)

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-----K 176
            S    +  L+L+   L      +  +       S+  LNL  N +  +    L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----- 226
              N+ SLNL    +  +    L          +  L+L      S              
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 227 TNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSL-----TG 276
            ++ S+NL    +   S  +L  +     +++ SLNL    +     A L          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 277 LTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL----SSLTL 327
           +T LDL    +     A L         ++ SL +C   L    ++++K L      L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 328 LNLSQN--CNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRS 376
           + L  +   N++ +           +  ++ ++ +   I  +    +     +       
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 377 LTLESCKVTANDIKRLQSRDLPN 399
            +L +  +      +    DL  
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNI 340

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 96.3 bits (240), Expect = 2e-22
 Identities = 57/336 (16%), Positives = 108/336 (32%), Gaps = 57/336 (16%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL----- 103
                 + SL++   N +       L         ++ SL +S + +       L     
Sbjct: 18  TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 104 KGLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKI---- 154
                +T LNL G  ++    D L         ++  L+L     S     +F +     
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 155 -GSLKVLNLGFNEITDECLVHL-KGL----TNLESLNLDSCGIGDEGLVNLTGL-----C 203
             S+  LNL  N++  +    L + L     N+ SLNL    +  +    L         
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 204 NLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLK 254
           ++  L+LS   +G      L+ +      ++ S+NL    +   SL  L  L      L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 255 SLNLDARQITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNF-----KNLR 302
           ++ LD   + +          AA  ++  +  +D  G  I  S +  + N          
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 303 SLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQN 333
              +    L  A      ++ +     L     +  
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 44/305 (14%), Positives = 91/305 (29%), Gaps = 51/305 (16%)

Query: 138 LNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDS 188
           +N       G     +       +  L+L  N +     V L         ++ SLNL  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 189 CGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTG 238
             +G +    L  +      N+  L LS   +       L          +  ++L +  
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 239 ISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSL-----TGLTHLDLFGARIT 288
            S  S  +         +S+ SLNL    +       L  +       +  L+L G  + 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 289 DSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL-----SSLTLLNLSQNCNLTD 338
               A L         ++ SL++    L       +  +     + +  LNL  N  L  
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHG 239

Query: 339 KTLELISGL----TGLVSLNVSNSRITSAG-------LRHLKPLKNLRSLTLESCKVTAN 387
            +LE +  L      L ++ +    + +               ++ +  +     ++  +
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

Query: 388 DIKRL 392
               +
Sbjct: 300 HSIPI 304

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 36/245 (14%), Positives = 74/245 (30%), Gaps = 43/245 (17%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK---- 59
           +N+TSL+   N  ++ +        +      +  LDL             K        
Sbjct: 80  ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 60  -LESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGL----QK 108
            + SLN+   N +       L  +      N+ SL +  + +     A L K L      
Sbjct: 139 SITSLNL-RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 109 LTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIG----SLKV 159
           +T L+L    +       L+ +       +  LNL    L     E    +      L+ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 160 LNLGFN---EITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKC 207
           + L ++    ++ E           +  +  ++ +   I     + ++ L          
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 208 LELSD 212
             L +
Sbjct: 318 PSLLN 322

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  103 bits (260), Expect = 2e-25
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 112
           +     +    N+K    +TD      + L ++  +  + S +    +  ++ L  +T L
Sbjct: 19  SDDAFAETIKDNLKK-KSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKL 73

Query: 113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
            L G  +T   +  L+ L +L +L L+  ++ D        +  LK L+L  N I+D  +
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--I 127

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
             L  L  LESL L +  I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 183

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 289
            LS   ISD  LR LAGL +L  L L +++  +  +   ++L     +      +  
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 18/250 (7%)

Query: 31  AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 90
                 +K +L++ +      V    L  ++ +     + I    ++ +  L N+  L +
Sbjct: 21  DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN-SDIKS--VQGIQYLPNVTKLFL 75

Query: 91  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
           + +K+TD  I  L  L+ L  L L+   V    L SL  L  L  L+L    +SD     
Sbjct: 76  NGNKLTD--IKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISD--ING 129

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
              +  L+ L LG N+ITD  +  L  LT L++L+L+   I D  +V L GL  L+ L L
Sbjct: 130 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYL 185

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQITDTGLA 269
           S   +  S LR L+GL NL+ + L      +  +   + L    ++ N D   +T   ++
Sbjct: 186 SKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

Query: 270 ALTSLTGLTH 279
                     
Sbjct: 244 DDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.3 bits (240), Expect = 8e-23
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 23/232 (9%)

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
               NL    +TD   V    L +++ +  ++  I    +  +  L N+  L L+  ++ 
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT 81

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
              ++ L+ L NL  + L    + D  L  L  L  LKSL+L+   I+D  +  L  L  
Sbjct: 82  D--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQ 135

Query: 277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
           L  L L   +ITD     L     L +L +    ++D  +  +  L+ L  L LS+N ++
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN-HI 190

Query: 337 TDKTLELISGLTG---LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           +D     +  L G   L  L + +    +  + H   L    ++      + 
Sbjct: 191 SD-----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 18/238 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
              + L+++  +    ++ I +  ++    L N+ KL L    ++   +  L  L  L  
Sbjct: 40  VTQNELNSIDQIIANNSD-IKS--VQGIQYLPNVTKLFLNG-NKLTD-IKPLANLKNLGW 94

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +   N + D  +  L  L  LKSL +  + ++D  I  L  L +L  L L    +T  
Sbjct: 95  LFLD-ENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT-- 147

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +  LS L  L  L+L   Q+SD      + +  L+ L L  N I+D  L  L GL NL+
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLD 203

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 240
            L L S    ++ + + + L     ++ +D  + +     +S   + E  N+ +    
Sbjct: 204 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.5 bits (212), Expect = 6e-19
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 45/236 (19%)

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
             I    +            NL    + D   V    L ++  +  +++ + S  ++ + 
Sbjct: 12  TPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQ 65

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            L N+  + L+   ++D  ++ LA L +L  L LD  ++ D  L++L  L  L  L L  
Sbjct: 66  YLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEH 121

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             I+D                          +  +  L  L  L L  N  +TD  + ++
Sbjct: 122 NGISD--------------------------INGLVHLPQLESLYLGNN-KITD--ITVL 152

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           S LT L +L++ +++I+   +  L  L  L++L L    ++  D++ L    L NL
Sbjct: 153 SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALA--GLKNL 202

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  102 bits (255), Expect = 3e-24
 Identities = 51/307 (16%), Positives = 95/307 (30%), Gaps = 60/307 (19%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVH----LKGLTNLES 183
           S+   +L    ++ +  +    +     S+K + L  N I  E        +    +LE 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 184 LNLDSCGIGDEGLVNLTGL----------CNLKCLELSDTQVGSSGLRHLSGL----TNL 229
                   G         L            L  + LSD   G +    L       T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 230 ESINLSFTGISDGSLRKLA-------------GLSSLKSLNLDARQITDTGLAA----LT 272
           E + L   G+   +  K+A                 L+S+     ++ +  +        
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 273 SLTGLTHLDLFGARITDSGAAY-----LRNFKNLRSLEICGGGLTDAGVKHI----KDLS 323
           S   L  + +    I   G  +     L   + L+ L++     T  G   +    K   
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 324 SLTLLNLSQNCNLTDKTLELIS------GLTGLVSLNVSNSRITSAGLRHL-----KPLK 372
           +L  L L+ +C L+ +    +          GL +L +  + I    +R L     + + 
Sbjct: 245 NLRELGLN-DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303

Query: 373 NLRSLTL 379
           +L  L L
Sbjct: 304 DLLFLEL 310

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 98.2 bits (245), Expect = 8e-23
 Identities = 52/332 (15%), Positives = 97/332 (29%), Gaps = 65/332 (19%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLI----NLVKLDLERCTRIHGGLVN----LKGLMKLES 62
           +   S + +  IT +  K+   ++    ++ ++ L   T            +     LE 
Sbjct: 6   IEGKSLKLDA-ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-- 120
                         +    L  L              +  L    KL  + L        
Sbjct: 65  AEF-SDIFTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPT 109

Query: 121 --AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-------------GSLKVLNLGFN 165
                +D LS    L +L L+   L      K ++                L+ +  G N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 166 EITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN-----LTGLCNLKCLELSDTQVG 216
            + +  +       +    L ++ +   GI  EG+ +     L     LK L+L D    
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 217 SSGLRHLS----GLTNLESINLSFTGISDGSLRKLA------GLSSLKSLNLDARQITDT 266
             G   L+       NL  + L+   +S      +           L++L L   +I   
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 267 GLAAL-----TSLTGLTHLDLFGARITDSGAA 293
            +  L       +  L  L+L G R ++    
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 321

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 89.4 bits (222), Expect = 7e-20
 Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 53/269 (19%)

Query: 156 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKC 207
           S++  +L  + IT E        L    +++ + L    IG E        +    +L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
            E SD   G         L  L              L+ L     L ++ L       T 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTA 110

Query: 268 LAALTSL----TGLTHLDLFGARITDSGAAYL-------------RNFKNLRSLEICGGG 310
              L       T L HL L    +     A +             +N   LRS+      
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 311 LTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL-----ELISGLTGLVSLNVSNSRIT 361
           L +  +K      +    L  + + QN  +  + +     E ++    L  L++ ++  T
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 362 SAGLRH----LKPLKNLRSLTLESCKVTA 386
             G       LK   NLR L L  C ++A
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSA 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 57/294 (19%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLI----NLVKLDLERCTRIHGGLVNLKGLM 58
             L    ++  +     N I  +  +  +  I    +L   +              + L 
Sbjct: 26  AVLLEDDSVKEIVLS-GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84

Query: 59  ----------KLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYL- 103
                     KL ++ +   N    +  +PL       T L+ L +  + +     A + 
Sbjct: 85  LLLQALLKCPKLHTVRL-SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 104 ------------KGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQLSDDG 147
                       K    L  +      +    +     +  +   L  + + +  +  +G
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 148 CEK-----FSKIGSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN 198
            E       +    LKVL+L  N  T          LK   NL  L L+ C +   G   
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 199 L------TGLCNLKCLELSDTQVGSSGLRHL-----SGLTNLESINLSFTGISD 241
           +           L+ L L   ++    +R L       + +L  + L+    S+
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (256), Expect = 9e-24
 Identities = 84/415 (20%), Positives = 146/415 (35%), Gaps = 32/415 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGL-MKL 60
           +  L  L  L+   N   + +  + F+ L NL  LDL      +     L  L  + +  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEG 116
            SL++   N +          +  L  L +  +     V  + I  L GL+   L+  E 
Sbjct: 180 LSLDLSL-NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITDE 170
                      SAL  L  L +   +L+      DD  + F+ + ++   +L    I   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER- 296

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            +         + L L +C  G         L       L+ T            L +LE
Sbjct: 297 -VKDFSYNFGWQHLELVNCKFG-----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

Query: 231 SINLSFTGISDGSL--RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
            ++LS  G+S      +   G +SLK L+L    +     +    L  L HLD   + + 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLK 409

Query: 289 D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 347
             S  +   + +NL  L+I       A       LSSL +L ++ N    +   ++ + L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 348 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
             L  L++S  ++          L +L+ L +       N+   L +     L S
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-----NNFFSLDTFPYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 3e-23
 Identities = 77/396 (19%), Positives = 141/396 (35%), Gaps = 28/396 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINL----VKLDLERCTRIHGGLVNLKGLM 58
           E  S L+NL  L    N  I +        L  +    + LDL     ++         +
Sbjct: 143 EYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI 200

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS------CSKVTDSGIAYLKGLQKLTLL 112
           +L  L ++      +     + GL  L+  ++          +     + L+GL  LT+ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 113 NLEGCPVTA---ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
                 +       +D  + L ++   +L    +     + FS     + L L   +   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--RVKDFSYNFGWQHLELVNCKFGQ 318

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLT 227
              + LK L  L   +            +   L +L+ L+LS   +   G       G T
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGAR 286
           +L+ ++LSF G+         GL  L+ L+     +      +   SL  L +LD+    
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS 345
              +         +L  L++ G    +  +  I  +L +LT L+LSQ   L   +    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN 491

Query: 346 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
            L+ L  LN+S++   S      K L +L+ L    
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 80/395 (20%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
            +  +L    N  +   G  +F     L  LDL RC    I  G    + L  L +L + 
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILT 84

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-D 125
             N I    +   SGL++L+ L    + +       +  L+ L  LN+    + +  L +
Sbjct: 85  G-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV----LNLGFNEITDECLVHLKGLTNL 181
             S L +L +L+L+  ++    C     +  + +    L+L  N +        K +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 182 ESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSG------LRHLSGLTNLESINL 234
             L L +       +   + GL  L+   L   +  + G         L GL NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 235 SFTGIS---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
               +    D  +     L+++ S +L +  I    +   +   G  HL+L   +     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-CNLTDKTLELISGLTGL 350
              L++ K L      GG           DL SL  L+LS+N  +      +   G T L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L++S + + +    +   L+ L  L  +   + 
Sbjct: 376 KYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 59/310 (19%), Positives = 95/310 (30%), Gaps = 16/310 (5%)

Query: 4   NLSGLSNLT--SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
            L GL NLT         +      +  F  L N+    L   T     + +       +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQ 307

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L +  C          L  L  L                    L  L  L+L    ++ 
Sbjct: 308 HLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSF 361

Query: 122 --ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGL 178
              C  S     SL YL+L+   +       F  +  L+ L+   + +           L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT 237
            NL  L++              GL +L+ L+++      +      + L NL  ++LS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            +   S      LSSL+ LN+               L  L  LD     I  S    L++
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 298 -FKNLRSLEI 306
              +L  L +
Sbjct: 541 FPSSLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 7/230 (3%)

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            + ++L+L    +   G  +      L+ L+LS  ++ +        L++L ++ L+   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRN 297
           I   +L   +GLSSL+ L      +       +  L  L  L++    I       Y  N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS---QNCNLTDKTLELISGLTGLVSLN 354
             NL  L++    +       ++ L  + LLNLS       +          +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 355 VSNSRITSAGLRH-LKPLKNLRSLTLESCKVT-ANDIKRLQSRDLPNLVS 402
           + N+  +   ++  ++ L  L    L   +     ++++     L  L +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 27/190 (14%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M+ N  GL  L  L F+ +N         F  L NL+ LD+                   
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH----------------- 430

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPV 119
                        +     +GL++L+ L+++ +   ++ +      L+ LT L+L  C +
Sbjct: 431 --------THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL- 178
                 + ++L SL  LN++           +  + SL+VL+   N I       L+   
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

Query: 179 TNLESLNLDS 188
           ++L  LNL  
Sbjct: 543 SSLAFLNLTQ 552

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (253), Expect = 2e-23
 Identities = 73/420 (17%), Positives = 148/420 (35%), Gaps = 38/420 (9%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 65
            + + SL    N  IT  G        NL  L L+      I G       L  LE L++
Sbjct: 25  TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDL 81

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACL 124
              N ++         L++LK L +  +     G+ +    L  L  L +      +   
Sbjct: 82  SD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 125 -DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
               + L SL  L +    L +   +    I  +  L L  +E      +    L+++  
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS----------SGLRHLSGLTNLESIN 233
           L L    +       L        ++    +               LR++  L+ +E  +
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 234 LSFTGI---SDGSLRKLAGLSSLKSLNLDARQITDTGL-----AALTSLTGLTHLDLFGA 285
            +  G+   +      ++ L  ++++ +    I    L        + L  +  + +  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---IKDLSSLTLLNLSQNCNLTD--KT 340
           ++     ++ ++ K+L  L++    + +  +K+        SL  L LSQN +L    KT
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKT 379

Query: 341 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            E++  L  L SL++S +          +  + +R L L S       I+ +++     L
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSS-----TGIRVVKTCIPQTL 433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 5e-20
 Identities = 62/402 (15%), Positives = 140/402 (34%), Gaps = 39/402 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
              L+NL +L        +      FAGL +L +L+++             LK +  +  
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHH 176

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +                L++++ L++  + +     + L   +  + +       +  
Sbjct: 177 LTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGC-------------EKFSKIGSLKVLNLGFNEITD 169
             +S + L  L    L   ++  D C             +  S++G ++ + +    I  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 170 ECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-- 222
             L +        L  ++ + +++  +          L +L+ L+LS+  +    L++  
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 223 -LSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
                 +L+++ LS   +     +   L  L +L SL++           +      +  
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L+L    I           + L  L++    L    +     L  L  L +S+N  L   
Sbjct: 415 LNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRN-KLK-- 464

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           TL   S    L+ + +S +++ S        L +L+ + L +
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 69/343 (20%), Positives = 132/343 (38%), Gaps = 20/343 (5%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           P      +KSL +S +K+T  G   L+    L +L L+   +     D+  +LGSL +L+
Sbjct: 21  PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEG 195
           L+   LS      F  + SLK LNL  N      +  L   LTNL++L + +     +  
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 196 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSS 252
            ++  GL +L  LE+    + +   + L  + ++  + L       + +     L+ +  
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL----RNFKNLRSLEICG 308
           L+  + +  +   + L      + +  L   G+ +TD     L    R    L  +E   
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 309 ------GGLTDAGVKHIKDLSSLTLLNLSQN----CNLTDKTLELISGLTGLVSLNVSNS 358
                 G    +    + +L  +  + + +       L      + S L  +  + V NS
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 359 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD-LPNL 400
           ++        + LK+L  L L    +    +K    +   P+L
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.0 bits (195), Expect = 4e-16
 Identities = 53/355 (14%), Positives = 112/355 (31%), Gaps = 37/355 (10%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKL 60
           ++L  + ++  L+   +             L ++  L+L      R     + +  +   
Sbjct: 166 QSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 61  ESLNIKWCNCITDSDMKPLSGLTN--LKSLQISCSKVTDSGIAYLKGLQ----------- 107
                   + +TD     L  L    L+  ++     T +G+      +           
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 108 --KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
              +  L++    +        S L  +  + +   ++    C     + SL+ L+L  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 166 EITDECLVH---LKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGL 220
            + +E L +        +L++L L    +         L  L NL  L++S         
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP- 403

Query: 221 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 280
                   +  +NLS TGI    ++      +L+ L++    +          L  L  L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR--VVKT-CIPQTLEVLDVSNNNLDSFS----LFLPRLQEL 456

Query: 281 DLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            +   ++      +     F  L  ++I    L          L+SL  + L  N
Sbjct: 457 YISRNKLKTLPDAS----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 3/201 (1%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            +K L+LS  ++   G   L    NL+ + L  + I+         L SL+ L+L    +
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 264 TDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKD 321
           +    +    L+ L +L+L G         +   N  NL++L I      ++        
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L+SL  L +    +L +   + +  +  +  L +  S            L ++R L L  
Sbjct: 147 LTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 382 CKVTANDIKRLQSRDLPNLVS 402
             +       L   ++ + + 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMK 226

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 309
            +++KSL+L   +IT  G   L +   L  L L  +RI         +  +L  L++   
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHL 368
            L+         LSSL  LNL  N   T     L   LT L +L + N    +       
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 369 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
             L +L  L +++       ++  QS+ L ++    
Sbjct: 145 AGLTSLNELEIKA-----LSLRNYQSQSLKSIRDIH 175

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 61/372 (16%), Positives = 118/372 (31%), Gaps = 48/372 (12%)

Query: 11  LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 70
           L  L    N A+ AQ       + NL  L+  +  +   G +  + L   E L+  + + 
Sbjct: 3   LVGLLSAHNRAVLAQ---LGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHY 59

Query: 71  ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAACLD 125
              +       L++L+ L ++  ++T      +   L      L  +NL  C +  A L 
Sbjct: 60  EFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR 119

Query: 126 SL-SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH----L 175
           +L         L L    L  + C+    +       +  L L  N +T   +      L
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 176 KGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSGL----T 227
            G T++  L+L   G+GDEGL      L     L+ L ++    G +    L+       
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239

Query: 228 NLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTS-LTGLTH 279
           +LE ++L F  +S    + L        G + +     +   +++     L+     L  
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNS 299

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN 335
            D             ++    L   ++                 +    +  L      +
Sbjct: 300 WDRAR----------VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Query: 336 LTDKTLELISGL 347
            +          
Sbjct: 350 GSPSGSWSHPQF 361

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 63/357 (17%), Positives = 116/357 (32%), Gaps = 54/357 (15%)

Query: 76  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 135
             P+  L  L++ Q    K+   G   L   + L  L             S   L SL  
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE--FQNQRFSAEVLSSLRQ 76

Query: 136 LNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC 189
           LNL   +++   C   + +      +L  +NL   ++    L  L         L L   
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 190 GIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----TNLESINLSFTGIS 240
            +G E   +L  L     C +  L LS+  + ++G+  L       T++  ++L  TG+ 
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 241 DGSLRKLAGL----SSLKSLNLDARQITDTGLAALTSL----TGLTHLDLFGARITDSGA 292
           D  L  LA        L+ LN+      DT   AL         L  L L+   ++  G 
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256

Query: 293 AYL-------RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL 341
             L            +      G  +++     +    ++L+S     + ++  L     
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELL---- 312

Query: 342 ELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTANDIKRLQS 394
                       ++ +SR  +       + L+    +R+L  +     +        
Sbjct: 313 ----------LRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 41/300 (13%), Positives = 84/300 (28%), Gaps = 75/300 (25%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
           L        L  + N+ +  +  K    L     L  ++C               + +L 
Sbjct: 122 LPVFLRARKLGLQLNS-LGPEACKDLRDL-----LLHDQCQ--------------ITTLR 161

Query: 65  IKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           +   N +T + +  L       T++  L +  + + D G+  L                 
Sbjct: 162 L-SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL----------------- 203

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITD------- 169
                 L     L  LN+      D      ++      SL++L+L FNE++        
Sbjct: 204 ---AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260

Query: 170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +     +G   +     +   + +   V L+    NL   + +  Q              
Sbjct: 261 DLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH----------LE 310

Query: 229 LESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTG----LAALTSLTGLTHL 280
           L   +L  +  +  +  + A L      +++L                       G  H 
Sbjct: 311 LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHH 370

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.1 bits (242), Expect = 5e-22
 Identities = 89/418 (21%), Positives = 157/418 (37%), Gaps = 38/418 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
           +  L  L  L+   N   + +  + F+ L NL  LDL       I+    +L+ L ++  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPL 177

Query: 63  LNIKW---CNCITDSDMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLE 115
           LN+      N +          +  L  L +  +     V  + I  L GL+   L+  E
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 116 GCPVTAACLDSLSALGSLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITD 169
                       SAL  L  L +   +L+      DD  + F+ + ++   +L    I  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 170 -ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
            +   +  G  +LE +N          L       +LK L  +  + G+        L +
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLK------SLKRLTFTSNKGGN--AFSEVDLPS 348

Query: 229 LESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           LE ++LS  G+S       +  G +SLK L+L    +     +    L  L HLD   + 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSN 407

Query: 287 ITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELI 344
           +   S  +   + +NL  L+I       A       LSSL +L ++ N +  +  L ++ 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIF 466

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           + L  L  L++S  ++          L +L+ L + S     N +K +       L S
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS-----NQLKSVPDGIFDRLTS 519

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.3 bits (240), Expect = 8e-22
 Identities = 87/460 (18%), Positives = 145/460 (31%), Gaps = 74/460 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
                 L  L   R   I      A+  L +L  L L       +  G     GL  L+ 
Sbjct: 48  FFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQK 104

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTA 121
           L     N +   +  P+  L  LK L ++ + +    +  Y   L  L  L+L    + +
Sbjct: 105 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 122 ACLDSLSALGSL----FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLK 176
                L  L  +      L+L+   ++      F +I  L  L L  N  +   +   ++
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ 222

Query: 177 GLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLELSDTQVGSSGLR--------- 221
           GL  LE   L      +EG +       L GLCNL   E     +               
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 222 -------------------HLSGLTNLESINLSFTGISDGSLRKL--------------- 247
                              +  G  +LE +N  F       L+ L               
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 248 -AGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
              L SL+ L+L    ++  G    +    T L +LDL    +    +      + L  L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401

Query: 305 EICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           +     L   +       L +L  L++S   +       + +GL+ L  L ++ +     
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 364 GLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
            L      L+NL  L L         +++L      +L S
Sbjct: 461 FLPDIFTELRNLTFLDLSQ-----CQLEQLSPTAFNSLSS 495

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 8e-19
 Identities = 80/395 (20%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
            +  +L    N  +   G  +F     L  LDL RC    I  G    + L  L +L + 
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILT 84

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-D 125
             N I    +   SGL++L+ L    + +       +  L+ L  LN+    + +  L +
Sbjct: 85  G-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV----LNLGFNEITDECLVHLKGLTNL 181
             S L +L +L+L+  ++    C     +  + +    L+L  N +        K +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 182 ESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSG------LRHLSGLTNLESINL 234
             L L +       +   + GL  L+   L   +  + G         L GL NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 235 SFTGI---SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
               +    D  +     L+++ S +L +  I    +   +   G  HL+L   +     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGL 350
              L++ K L      GG           DL SL  L+LS+N  +      +   G T L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSE-----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 351 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             L++S + + +    +   L+ L  L  +   + 
Sbjct: 376 KYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 66/344 (19%), Positives = 114/344 (33%), Gaps = 18/344 (5%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N +             L+ L +S  ++        + L  L+ L L G P+ +  L + S
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLD 187
            L SL  L      L+         + +LK LN+  N I    L      LTNLE L+L 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 188 SCGIGDEGLVNLTGLCNLKC----LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           S  I      +L  L  +      L+LS   +          +  L  + L     S   
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216

Query: 244 LRK-LAGLSSLKSLNL------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           ++  + GL+ L+   L      +   +     +AL  L  LT  +   A +       + 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
            F  L ++      L    ++ +KD S        +  N        +  L  L  L  +
Sbjct: 277 LFNCLTNVSS--FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFT 333

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           +++  +        L +L  L L    ++             +L
Sbjct: 334 SNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 69/337 (20%), Positives = 114/337 (33%), Gaps = 22/337 (6%)

Query: 10  NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--------RCTRIHGGLVNLKGLMKLE 61
            L  L+ R N            GL  L    L            +     +     + +E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 120
              + + +   D  +   + LTN+ S  +    +      +Y  G Q L L+N +     
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGL 178
              L SL        L     +  +        + SL+ L+L  N ++    C     G 
Sbjct: 321 TLKLKSLK------RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFT 237
           T+L+ L+L   G+      N  GL  L+ L+   + +   S       L NL  +++S T
Sbjct: 373 TSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLR 296
                      GLSSL+ L +      +  L    T L  LT LDL   ++         
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +  +L+ L +    L          L+SL  + L  N
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 51/239 (21%), Positives = 88/239 (36%), Gaps = 16/239 (6%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           ++ S       L                  L +L +L         G   +   L  LE 
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEF 351

Query: 63  LNIKWCNCITDSDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 120
           L++   N ++       S  G T+LK L +S + V     +   GL++L  L+ +   + 
Sbjct: 352 LDLS-RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLK 409

Query: 121 AACLDSLSA---LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LK 176
              +   S    L +L YL+++           F+ + SL+VL +  N   +  L     
Sbjct: 410 Q--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
            L NL  L+L  C +          L +L+ L ++  Q+ S        LT+L+ I L 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 7/230 (3%)

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            + ++L+L    +   G  +      L+ L+LS  ++ +        L++L ++ L+   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRN 297
           I   +L   +GLSSL+ L      +       +  L  L  L++    I       Y  N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS---QNCNLTDKTLELISGLTGLVSLN 354
             NL  L++    +       ++ L  + LLNLS       +          +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 355 VSNSRITSAGLRH-LKPLKNLRSLTLESCKVT-ANDIKRLQSRDLPNLVS 402
           + N+  +   ++  ++ L  L    L   +     ++++     L  L +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           M+ N  GL  L  L F+ +N         F  L NL+ LD+                   
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH----------------- 430

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPV 119
                        +     +GL++L+ L+++ +   ++ +      L+ LT L+L  C +
Sbjct: 431 --------THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 171
                 + ++L SL  LN+   QL       F ++ SL+ + L  N     C
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 3e-21
 Identities = 69/408 (16%), Positives = 137/408 (33%), Gaps = 35/408 (8%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAG-----LINLVKLDLERC--TRIHGGLVNLKGLMKLE 61
           SNL       +  I  Q    + G     L N   +  +     ++   L  L    ++E
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQVE 78

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            LN+     I + D    +    ++ L +  + +        + +  LT+L LE   +++
Sbjct: 79  LLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                      L  L+++   L     + F    SL+ L L  N +T    V L  + +L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSL 194

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
              N+    +       L     ++ L+ S   +             L  + L    ++D
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTD 246

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
                L     L  ++L   ++          +  L  L +   R+  +   Y +    L
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 361
           + L++    L     ++      L  L L  N ++   TL+ +S    L +L +S++   
Sbjct: 304 KVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SIV--TLK-LSTHHTLKNLTLSHNDWD 358

Query: 362 SAGLRHLKPLKNLRSLTLE----SCKVTANDIKRLQSRDLPNLVSFRP 405
              LR L   +N+    ++     CK+       L  ++       R 
Sbjct: 359 CNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 9e-19
 Identities = 54/334 (16%), Positives = 109/334 (32%), Gaps = 25/334 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
           L     +  L+   +  I      AFA    + KL +       +   +   + +  L  
Sbjct: 71  LDSFRQVELLNL-NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTV 127

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L ++  N ++            L +L +S + +        +    L  L L    +T  
Sbjct: 128 LVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
               LS + SLF+ N++   LS       +   +++ L+   N I     V       L 
Sbjct: 187 ---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV---VRGPVNVELT 235

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            L L    + D     L     L  ++LS  ++          +  LE + +S   +   
Sbjct: 236 ILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 302
           +      + +LK L+L    +             L +L L    I       L     L+
Sbjct: 294 N-LYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVT---LKLSTHHTLK 348

Query: 303 SLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCN 335
           +L +       ++     ++++   + +  Q+C 
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCK 382

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 54/393 (13%), Positives = 120/393 (30%), Gaps = 60/393 (15%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
              +  LT L     N +++     F     L  L +                       
Sbjct: 119 FQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSN--------------------- 156

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               N +   +       T+L++LQ+S +++T   ++ +  L    +            L
Sbjct: 157 ----NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL--------L 204

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +L+   ++  L+ +   ++            L +L L  N +TD     L     L  +
Sbjct: 205 STLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLVEV 259

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           +L    +          +  L+ L +S+ ++  +   +   +  L+ ++LS   +     
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVE- 317

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRS 303
           R       L++L LD   I       L++   L +L L       +S  A  RN      
Sbjct: 318 RNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 374

Query: 304 LEI---------------CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
            +                C         + ++ ++  +++   Q         + I+ + 
Sbjct: 375 DDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQ 434

Query: 349 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
            L         +   G   L+   N     ++ 
Sbjct: 435 SLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 16/218 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           + + P  GL N     +    VTD  +   K L  +   N +   + +  L  +    +L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNL 65

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L+L+  Q+SD        +  L+ L++  N + +  L  +     L  L LD+  + D
Sbjct: 66  KELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSA-CLSRLFLDNNELRD 120

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
               +L  L NL+ L + + ++    +  L  L+ LE ++L    I++     L  L  +
Sbjct: 121 --TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKV 174

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHL-DLFGARITDS 290
             ++L  ++  +  +     L     + D  G  I+  
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 87.4 bits (217), Expect = 7e-20
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 42/237 (17%)

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 224
             I    +    GL N    NL    + D  LV+   L  ++     ++ + S  L  + 
Sbjct: 7   TPINQ--VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQ 60

Query: 225 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
             TNL+ ++LS   ISD  L  L  L+ L+ L+++  ++ +  L  + S   L+ L L  
Sbjct: 61  FFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFLDN 115

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             + D                             +  L +L +L++  N  L    + ++
Sbjct: 116 NELRD--------------------------TDSLIHLKNLEILSIRNN-KLKS--IVML 146

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
             L+ L  L++  + IT+     L  LK +  + L   K     +K      + N V
Sbjct: 147 GFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 42/210 (20%), Positives = 87/210 (41%), Gaps = 17/210 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
               GL+N    +  + + +T   + +   L  +   + +  + I   L  ++    L+ 
Sbjct: 13  FPDPGLANAVKQNLGKQS-VTD--LVSQKELSGVQNFNGD-NSNIQS-LAGMQFFTNLKE 67

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N I+D  + PL  LT L+ L ++ +++ +  +  +     L+ L L+   +   
Sbjct: 68  LHL-SHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSA-CLSRLFLDNNELR-- 119

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
             DSL  L +L  L++   +L          +  L+VL+L  NEIT+     L  L  + 
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVN 175

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSD 212
            ++L      +E +     L     ++  D
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 31/158 (19%)

Query: 3   ENLSGLSNLTSLSFRRN--------------------NAITAQGMKAFAGLINLVKLDLE 42
             L  L+ L  LS  RN                    N +      +   L NL  L + 
Sbjct: 79  SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR--DTDSLIHLKNLEILSIR 136

Query: 43  RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 102
              ++   +V L  L KLE L++   N IT+     L+ L  +  + ++  K  +  + Y
Sbjct: 137 NN-KLKS-IVMLGFLSKLEVLDL-HGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKY 191

Query: 103 LKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNLN 139
              L    T+ + +G  ++      +S  GS     + 
Sbjct: 192 QPELYITNTVKDPDGRWIS---PYYISNGGSYVDGCVL 226

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 6e-21
 Identities = 54/328 (16%), Positives = 102/328 (31%), Gaps = 24/328 (7%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 65
           L+N   ++F+ +  +             +  L+L       I            ++ L +
Sbjct: 44  LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYM 100

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
              N I          +  L  L +  + ++           KLT L++    +     D
Sbjct: 101 -GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +  A  SL  L L+  +L+       S I SL   N+ +N ++      L     +E L+
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELD 211

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 245
                I     V       L  L+L    +  +    L     L  ++LS+  +      
Sbjct: 212 ASHNSINV---VRGPVNVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYH 266

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
               +  L+ L +   ++          +  L  LDL    +          F  L +L 
Sbjct: 267 PFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLY 324

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
           +    +       +    +L  L LS N
Sbjct: 325 LDHNSIVTL---KLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 54/305 (17%), Positives = 109/305 (35%), Gaps = 25/305 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
            +    +  L     NAI       F  +  L  L LER   + +  G+       KL +
Sbjct: 89  FAYAHTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTT 145

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N +   +       T+L++LQ+S +++T   ++ +  L    +           
Sbjct: 146 LSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL------- 197

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            L +L+   ++  L+ +   ++            L +L L  N +TD     L     L 
Sbjct: 198 -LSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLV 251

Query: 183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            ++L    +          +  L+ L +S+ ++  +   +   +  L+ ++LS   +   
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHV 310

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNL 301
             R       L++L LD   I    L+   +   L +L L       +S  A  RN    
Sbjct: 311 E-RNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARP 366

Query: 302 RSLEI 306
              + 
Sbjct: 367 AVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 18/226 (7%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L N + +   +  +       L     ++ L L+D Q+        +    ++ + + F 
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I          +  L  L L+   ++        +   LT L +    +        + 
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
             +L++L++    LT      +  + SL   N+S N       L  ++    +  L+ S+
Sbjct: 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASH 214

Query: 358 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVS 402
           + I             L  L L+      N++       + P LV 
Sbjct: 215 NSINVV---RGPVNVELTILKLQH-----NNLTDTAWLLNYPGLVE 252

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 14/226 (6%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           L+       +++D              L N K +   ++ +       L     +E +NL
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 294
           +   I +      A   +++ L +    I         ++  LT L L    ++      
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
             N   L +L +    L        +  +SL  L LS N  LT   L   S +  L   N
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL---SLIPSLFHAN 192

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           VS + +++     L     +  L         N I  ++      L
Sbjct: 193 VSYNLLST-----LAIPIAVEELDASH-----NSINVVRGPVNVEL 228

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 6/180 (3%)

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           L        +++           +   L++ K +      +     A L S   +  L+L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
              +I +           ++ L +    +        +++  LT+L L +N +L+     
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRG 135

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           +      L +L++SN+ +        +   +L++L L S     N +  +    +P+L  
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-----NRLTHVDLSLIPSLFH 190

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 68/359 (18%), Positives = 120/359 (33%), Gaps = 33/359 (9%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
            S L +L  L   +           F GL +L+ L L+     ++  G     GL  LE 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA--FNGLANLEV 107

Query: 63  LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPV 119
           L +     +  + +       LT+L+ L +  + +      ++   +++  +L+L    V
Sbjct: 108 LTLTQ-CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 120 TAACLDSLSALGSLF----------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT- 168
            + C + L                   ++N   L  + C    K  S+  L+L  N    
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 169 --DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC------------NLKCLELSDTQ 214
              +        T ++SL L +         +                  +K  +LS ++
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           + +      S  T+LE + L+   I+        GL+ L  LNL    +         +L
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             L  LDL    I   G        NL+ L +    L          L+SL  + L  N
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 63/389 (16%), Positives = 129/389 (33%), Gaps = 30/389 (7%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLESLNI 65
           +++  +    N+ I      +F+ L +L  L +E+      I       +GL  L  L +
Sbjct: 30  AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT--FRGLSSLIILKL 86

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAAC 123
            + N     +    +GL NL+ L ++   +  + +   + K L  L +L L    +    
Sbjct: 87  DY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 124 LDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK------ 176
             S    +     L+L   ++     E            L  + IT + +          
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 177 ----GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
                 T++ +L+L   G  +              ++        +           +  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
           N +F G+           S +K+ +L   +I     +  +  T L  L L    I     
Sbjct: 266 NFTFKGLE---------ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
                  +L  L +    L     +  ++L  L +L+LS N ++     +   GL  L  
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKE 375

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L +  +++ S        L +L+ + L +
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 56/291 (19%), Positives = 95/291 (32%), Gaps = 29/291 (9%)

Query: 126 SLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           S S L  L +L + +           F  + SL +L L +N+          GL NLE L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 185 NLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---FTG 238
            L  C +    L       L +L+ L L D  +           +     ++L+      
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 239 ISDGSLRKLAG-------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 291
           I +  L    G       LSS+   +++   +           T +T LDL G    +S 
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 292 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 351
           A    +      ++      +                +     N T K LE     +G+ 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSY---NMGSSFGHTNFKDPD---NFTFKGLEA----SGVK 278

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           + ++S S+I +          +L  LTL       N+I ++       L  
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-----NEINKIDDNAFWGLTH 324

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 5/182 (2%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGA 285
            ++  ++LS   I++ +    + L  L+ L ++ +             L+ L  L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 286 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQNCNLTDKTLEL 343
           +             NL  L +    L  A +     K L+SL +L L  N N+       
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS 148

Query: 344 I-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
               +     L+++ +++ S     L   +      L    +T  D+             
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 403 FR 404
           F+
Sbjct: 209 FK 210

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 4e-20
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 4/227 (1%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           + ++LNL  N+I    +   K L +LE L L    I    +    GL NL  LEL D ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 274
            +        L+ L+ + L    I          + SL+ L+L + ++++     A   L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           + L +L+L    + +     L     L  L++ G  L+       + L  L  L + Q+ 
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
            +          L  LV +N++++ +T        PL +L  + L  
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 4e-19
 Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 3/226 (1%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
             LLNL    +    ++S   L  L  L L+R  +       F+ + +L  L L  N +T
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLT 227
                    L+ L+ L L +  I          + +L+ L+L +  ++         GL+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
           NL  +NL+   +    +  L  L  L  L+L    ++     +   L  L  L +  ++I
Sbjct: 186 NLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
                    N ++L  + +    LT         L  L  ++L  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I    +     L +L+ LQ+S + +    I    GL  L  L L    +T     +  
Sbjct: 74  NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD 187
            L  L  L L    +       F++I SL+ L+LG    ++       +GL+NL  LNL 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
            C + +  + NLT L  L  L+LS   + +       GL +L+ + +  + I        
Sbjct: 194 MCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
             L SL  +NL    +T       T L  L  + L  
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 7/186 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
            +GL+NL +L    N  +T     AF  L  L +L L       I         +  L  
Sbjct: 108 FNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--FNRIPSLRR 164

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++     ++        GL+NL+ L ++   + +  I  L  L KL  L+L G  ++A 
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAI 222

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
              S   L  L  L + + Q+       F  + SL  +NL  N +T         L +LE
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 183 SLNLDS 188
            ++L  
Sbjct: 283 RIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 9/230 (3%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
           +N   L+   N  I    + +F  L +L  L L R     I  G     GL  L +L + 
Sbjct: 64  TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA--FNGLANLNTLELF 120

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 125
             N +T         L+ LK L +  + +          +  L  L+L     ++     
Sbjct: 121 D-NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +   L +L YLNL  C L +      + +  L  L+L  N ++       +GL +L+ L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           +    I          L +L  + L+   +        + L +LE I+L 
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 12/201 (5%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           N + L L + Q+    +     L +LE + LS   I    +    GL++L +L L   ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDL 322
           T     A   L+ L  L L    I    +       +LR L++     L+       + L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           S+L  LNL+   NL    +  ++ L  L  L++S + +++      + L +L+ L +   
Sbjct: 185 SNLRYLNLAMC-NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ- 240

Query: 383 KVTANDIKRLQS---RDLPNL 400
               + I+ ++     +L +L
Sbjct: 241 ----SQIQVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           TN   +NL    I    +     L  L+ L L    I    + A   L  L  L+LF  R
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           +T            L+ L +    +          + SL  L+L +   L+  +     G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           L+ L  LN++   +    + +L PL  L  L L       N +  ++      L+ 
Sbjct: 184 LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSG-----NHLSAIRPGSFQGLMH 232

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 8e-20
 Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 8/229 (3%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 213
           + + LNL  N I        + L +LE L L    I   + G     GL +L  LEL D 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDN 133

Query: 214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 272
            +          L+ L  + L    I          + SL  L+L + +++      A  
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
            L  L +L+L    I D     L     L  LE+ G    +        LSSL  L +  
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           +  ++        GL  LV LN++++ ++S       PL+ L  L L  
Sbjct: 252 S-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N I          L +L+ LQ+  + +    +    GL  L  L L    +T     +  
Sbjct: 85  NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD 187
            L  L  L L    +       F+++ SL  L+LG   ++        +GL NL+ LNL 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 247
            C I D  + NLT L  L+ LE+S             GL++L+ + +  + +S       
Sbjct: 205 MCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
            GL+SL  LNL    ++       T L  L  L L  
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 50/211 (23%), Positives = 77/211 (36%), Gaps = 15/211 (7%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
            + L  L +L L    +    + + + L SL  L L    L+      F  +  L+ L L
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNLKCLELSDTQVGSS 218
             N I          + +L  L+L        I +     L    NLK L L    +   
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF---NLKYLNLGMCNI--K 209

Query: 219 GLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
            + +L+ L  LE + +S   F  I  GS     GLSSLK L +   Q++     A   L 
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
            L  L+L    ++          + L  L +
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 6e-16
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 9/230 (3%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
           SN   L+   NN I       F  L +L  L L R    +I  G     GL  L +L + 
Sbjct: 75  SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELF 131

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 125
             N +T         L+ L+ L +  + +          +  L  L+L     +      
Sbjct: 132 D-NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
           +   L +L YLNL  C + D      + +  L+ L +  N   +       GL++L+ L 
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           + +  +         GL +L  L L+   + S      + L  L  ++L 
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 15/190 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
              L +L  L   RN+ I    + AF GL +L  L+L     T I  G    + L KL  
Sbjct: 95  FRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGA--FEYLSKLRE 151

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           L ++  N I        + + +L  L +    K+        +GL  L  LNL  C +  
Sbjct: 152 LWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---LKGL 178
             + +L+ L  L  L ++     +     F  + SLK L +  ++++    +      GL
Sbjct: 211 --MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL---IERNAFDGL 265

Query: 179 TNLESLNLDS 188
            +L  LNL  
Sbjct: 266 ASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 12/201 (5%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           N + L L +  +          L +LE + L    I    +    GL+SL +L L    +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDL 322
           T     A   L+ L  L L    I    +       +L  L++     L        + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
            +L  LNL    N+ D  +  ++ L GL  L +S +            L +L+ L + + 
Sbjct: 196 FNLKYLNLGMC-NIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN- 251

Query: 383 KVTANDIKRLQS---RDLPNL 400
               + +  ++      L +L
Sbjct: 252 ----SQVSLIERNAFDGLASL 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 7/176 (3%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
           +N   +NL    I          L  L+ L L    I    + A   L  L  L+LF   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           +T   +        LR L +    +          + SL  L+L +   L   +     G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           L  L  LN+    I    + +L PL  L  L +       N    ++      L S
Sbjct: 195 LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSG-----NHFPEIRPGSFHGLSS 243

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
            + + +L  L       +      AF GL NL  L+L  C    +     NL  L+ LE 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEE 222

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L +   N   +       GL++LK L +  S+V+        GL  L  LNL    +++ 
Sbjct: 223 LEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 123 CLDSLSALGSLFYLNLN 139
             D  + L  L  L+L+
Sbjct: 282 PHDLFTPLRYLVELHLH 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 9e-20
 Identities = 51/274 (18%), Positives = 100/274 (36%), Gaps = 16/274 (5%)

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
           +            +    L            ++K L+L  N ++      L   T LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
           NL S  +     ++L  L  L+ L+L++       ++ L    ++E+++ +   IS  S 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 303
            +       K++ L   +IT          + + +LDL    I   + A    +   L  
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L +    + D  VK     + L  L+LS N  L     E      G+  +++ N+++   
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLI 229

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 397
             + L+  +NL    L         ++   S++ 
Sbjct: 230 E-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 53/300 (17%), Positives = 110/300 (36%), Gaps = 19/300 (6%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
             +  +  +    +  A      +  ++  L+L+   LS       +    L++LNL  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            + +   + L+ L+ L +L+L++  + +     L    +++ L  ++  +         G
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG 284
             N+    L+   I+          S ++ L+L   +I     A L  S   L HL+L  
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-EL 343
             I D        F  L++L++    L   G    +  + +T ++L  N  L    + + 
Sbjct: 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN-KLV--LIEKA 232

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 403
           +     L   ++  +      LR     KN R  T+    V     +  +   +P L  +
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 52/291 (17%), Positives = 107/291 (36%), Gaps = 17/291 (5%)

Query: 57  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 116
             + +   +   + +  +         N+K L +S + ++    A L    KL LLNL  
Sbjct: 9   GNRYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 176
             +       L +L +L  L+LN   + +          S++ L+   N I+    V   
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCS 117

Query: 177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS 235
                +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 295
           +  I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A L
Sbjct: 178 YNFIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-L 233

Query: 296 RNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
           R  +NL   ++ G G               +  +       LT +  E  +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 48/328 (14%), Positives = 102/328 (31%), Gaps = 42/328 (12%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 67
            +         ++ +            N+ +LDL                          
Sbjct: 9   GNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSG------------------------ 43

Query: 68  CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 127
            N ++      L+  T L+ L +S + + +     L+ L  L  L+L         +  L
Sbjct: 44  -NPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNN-----YVQEL 95

Query: 128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
               S+  L+     +S   C +       K + L  N+IT    +     + ++ L+L 
Sbjct: 96  LVGPSIETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 188 SCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
              I              L+ L L    +    ++       L++++LS   ++     +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLAFMG-PE 209

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
               + +  ++L   ++      AL     L H DL G            + KN R   +
Sbjct: 210 FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTV 267

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
               +     ++ ++ +  TL +    C
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYC 295

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 47/307 (15%), Positives = 103/307 (33%), Gaps = 22/307 (7%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
                  N+  L    N  ++       A    L  L+L     ++   ++L+ L  L +
Sbjct: 28  SLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLY-ETLDLESLSTLRT 84

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L++   N + +     L    ++++L  + + ++    +  +G +    + L    +T  
Sbjct: 85  LDLNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITML 135

Query: 123 CLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                     + YL+L   ++   +  E  +   +L+ LNL +N I D  +        L
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKL 193

Query: 182 ESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 239
           ++L+L S  +        +      +  + L + ++     + L    NLE  +L   G 
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGF 249

Query: 240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
             G+LR      + +   +  + +           T  T          D  A +     
Sbjct: 250 HCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 300 NLRSLEI 306
            L     
Sbjct: 309 ALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 332
           +        +  + +  + A+  ++  N++ L++ G  L+      +   + L LLNLS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 333 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 392
           N  L +     +  L+ L +L+++N+ +       L    ++ +L   +     N+I R+
Sbjct: 68  N-VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN-----NNISRV 114

Query: 393 QSRDLPNL 400
                   
Sbjct: 115 SCSRGQGK 122

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 2e-19
 Identities = 59/431 (13%), Positives = 130/431 (30%), Gaps = 53/431 (12%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + +  L+ L  LSF  ++   +  +     L   +  + +   R+H   + L    +L  
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 63  LNIKWCNCITDSDMKPLSGLT--NLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPV 119
            ++       + +MKP+   +  +LK  QI       + I   ++ L KL ++     P 
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 120 TAACL-------------------DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 160
           T   +                    S S L  L  + L  C       +    +  L+ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 161 NLGFNEITDECLVH---------LKGLTNLESLNLDSC---GIGDEGLVNLTGLCNLKCL 208
           N+  N       +                ++   +              +L  +  L  L
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA--SLQKMVKLGLL 578

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TG 267
           +    +V    L        L  + L +  I +      A    ++ L     ++     
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636

Query: 268 LAALTSLTGLTHLDLFGARITD-----SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
           +    S+  +  +D    +I       S +       N  ++ +    +     +     
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 323 SSLTLLNLSQNC------NLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNL 374
           S ++ + LS N       N              L ++++  +++TS     R    L  L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT-LPYL 755

Query: 375 RSLTLESCKVT 385
            ++ +     +
Sbjct: 756 SNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 4e-18
 Identities = 55/409 (13%), Positives = 120/409 (29%), Gaps = 48/409 (11%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + +  L+ L  + F  +              ++    + +   +     ++   L  L  
Sbjct: 442 KAIQRLTKLQIIYFANSP------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY---------LKGLQKLTLLN 113
           + +  C  +T      L  L  L+SL I+C++   +                  K+ +  
Sbjct: 496 VELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 114 LEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 172
           +    +       SL  +  L  L+    ++     E F     L  L L +N+I +   
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 173 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS-----SGLRHLSGL 226
                   +E L      +     + N   +  +  ++ S  ++GS     S        
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 227 TNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITD-------TGLAALTSLTG 276
            N  ++ LS                  S + ++ L    +T               +   
Sbjct: 673 INASTVTLSYNEIQKFPTELFATG---SPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 277 LTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
           LT +DL   ++T  S          L ++++     +        + S L    +    +
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRD 788

Query: 336 LTDKTL-----ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
                +       I+    L+ L + ++ I        K    L  L +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV---DEKLTPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 8e-18
 Identities = 59/395 (14%), Positives = 129/395 (32%), Gaps = 43/395 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            S L +LT +       +T         L  L  L++                 +  S  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACN--------------RGISAA 531

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAAC 123
               +    +D         ++   +  + + +    A L+ + KL LL+     V    
Sbjct: 532 QLKADWTRLADD--EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-- 587

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLE 182
           L++      L  L L+  Q+ +   +  +    ++ L    N++     + + K +  + 
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 183 SLNLDSCGIGDE-----GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-- 235
           S++     IG E       ++     N   + LS  ++        +  + + +I LS  
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 236 -FTGISDGSLRK----LAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITD 289
             T I + SL+           L +++L   ++T        T+L  L+++D+     + 
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 290 --SGAAYLRNFKNL---RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
             +        K        +  G  +       I    SL  L +  N ++     +L 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL- 825

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
                L  L+++++   S  +  + P        L
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 47/407 (11%), Positives = 119/407 (29%), Gaps = 34/407 (8%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L     +T LS     A       A   L  L  L     +    G +     +  +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
             +            L     L    +    +       +K ++K + ++L+   +    
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLT 434

Query: 124 L------DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
                   ++  L  L  +       +       +     +  N  + +  +   +    
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 237
           L +L  + L +C    +    L  L  L+ L ++  +             +   +   +T
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR-----------GISAAQLKADWT 538

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLR 296
            ++D           ++   +    + +    A+L  +  L  LD    ++    A    
Sbjct: 539 RLADD----EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FG 592

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNV 355
               L  L++    + +           +  L  S N  L     +     +  + S++ 
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDF 651

Query: 356 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           S ++I S G      + + + +   +  ++ N+I++  +        
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           + ++      +       NN        +   ++ L  LD     ++   L      +KL
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRH-LEAFGTNVKL 597

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNL----- 114
             L +   N I +      +    ++ L  S +K+     I   K +  +  ++      
Sbjct: 598 TDLKL-DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
                  +C        +   + L+  ++     E F+    +  + L  N         
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN--------- 707

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESIN 233
                 + S+  +S    D    N      L  ++L   ++ S S     + L  L +++
Sbjct: 708 -----LMTSIPENSLKPKDGNYKNTY---LLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 234 LSFTGISD-----GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           +S+   S       +  +L         + +  +I       +T+   L  L +
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 31/283 (10%), Positives = 82/283 (28%), Gaps = 30/283 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 62
                 LT L    N  I        A    +  L      ++     + N K +  + S
Sbjct: 591 FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGS 648

Query: 63  LNIKWCNCITD-----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 117
           ++  + N I       S         N  ++ +S +++             ++ + L   
Sbjct: 649 VDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 118 PVTA-------ACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITD 169
            +T+           +      L  ++L   +L+      + + +  L  +++ +N  + 
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 170 --ECLVHLKGLTNL---ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL- 223
                ++   L         + +   I  +    +T   +L  L++         +R + 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-----IRKVD 822

Query: 224 -SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
                 L  ++++        +  +          L   +  D
Sbjct: 823 EKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 70/360 (19%), Positives = 123/360 (34%), Gaps = 38/360 (10%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
           N                ++ + L  L SL+    + ITD  M  +  LT L  L  + + 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCH-NSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 95  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 154
           +T      L     LT L  +   +T      ++ L  L YLN +  +L+       S+ 
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLD---VSQN 126

Query: 155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
             L  LN   N +T+   + +   T L  L+           +++T    L  L+ S  +
Sbjct: 127 PLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNK 181

Query: 215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 274
           +       +S    L  +N     I+   L        L  L+  + ++T+     +T L
Sbjct: 182 ITEL---DVSQNKLLNRLNCDTNNITKLDL---NQNIQLTFLDCSSNKLTE---IDVTPL 232

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 334
           T LT+ D     +T+   +       L +L      L +  + H   L         +  
Sbjct: 233 TQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
            L       ++  T L  L+   + IT      L     L  L L + ++T  D+     
Sbjct: 290 ELD------VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVSHNTK 340

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 81/399 (20%), Positives = 142/399 (35%), Gaps = 44/399 (11%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +   L+ LTSL    ++ IT   M     L  L KL       I    ++L     L  L
Sbjct: 37  SEEQLATLTSLDCHNSS-ITD--MTGIEKLTGLTKLICTSN-NITT--LDLSQNTNLTYL 90

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
                N +T+     ++ LT L  L    +K+T   ++       LT LN     +T   
Sbjct: 91  ACD-SNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTE-- 141

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S    L  L+ +  +         +    L  L+  FN+IT+   + +     L  
Sbjct: 142 -IDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE---LDVSQNKLLNR 195

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           LN D+  I     ++L     L  L+ S  ++       ++ LT L   + S   +++  
Sbjct: 196 LNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD 249

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
              ++ LS L +L+     + +  L   T L           +  D     + +   L  
Sbjct: 250 ---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD-----VTHNTQLYL 301

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L+    G+T+     +     L  L L+    LT   L+ +S  T L SL+  N+ I   
Sbjct: 302 LDCQAAGITE---LDLSQNPKLVYLYLNNT-ELT--ELD-VSHNTKLKSLSCVNAHIQD- 353

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
               +  +  L +      +      + L +  L   VS
Sbjct: 354 -FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 65/386 (16%), Positives = 134/386 (34%), Gaps = 41/386 (10%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +LS  +NLT L+   +N +T         L  L  L+ +         +++     L  L
Sbjct: 80  DLSQNTNLTYLAC-DSNKLTN---LDVTPLTKLTYLNCDTNKLTK---LDVSQNPLLTYL 132

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           N    N +T+ D   +S  T L  L    +K        +    +LT L+     +T   
Sbjct: 133 NCA-RNTLTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-- 184

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
              +S    L  LN +   ++       ++   L  L+   N++T+   + +  LT L  
Sbjct: 185 -LDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTY 237

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
            +     + +   ++++ L  L  L    T +    L H + L   ++         D  
Sbjct: 238 FDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD-- 292

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 303
              +   + L  L+  A  IT+     L+    L +L L    +T+     + +   L+S
Sbjct: 293 ---VTHNTQLYLLDCQAAGITE---LDLSQNPKLVYLYLNNTELTELD---VSHNTKLKS 343

Query: 304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 363
           L      + D     +  + +L     ++       T+   +     +++ VS   +   
Sbjct: 344 LSCVNAHIQD--FSSVGKIPALNNNFEAEG-QTI--TMPKETLTNNSLTIAVSPDLLDQF 398

Query: 364 GLRHLKPLKNLRSLTLESCKVTANDI 389
           G        +       +  +T  ++
Sbjct: 399 GNPMNIEPGDGGVYDQATNTITWENL 424

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 5e-19
 Identities = 49/269 (18%), Positives = 103/269 (38%), Gaps = 27/269 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
              L NL +L    NN I+     AFA L+ L +L L   +   +   +        L+ 
Sbjct: 72  FKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-----PKTLQE 125

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVT 120
           L +   N IT       +GL  +  +++  + +  SGI     +G++KL+ + +    +T
Sbjct: 126 LRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
                      SL  L+L+  +++         + +L  L L FN I+      L    +
Sbjct: 185 TI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 181 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSD---TQVGSSGLRH---LSGLTNLESI 232
           L  L+L++  +     GL +      ++ + L +   + +GS+        +   +   +
Sbjct: 242 LRELHLNNNKLVKVPGGLADHK---YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 233 NLSFTGISDGSLRKLA--GLSSLKSLNLD 259
           +L    +    ++      +    ++ L 
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 51/295 (17%), Positives = 102/295 (34%), Gaps = 30/295 (10%)

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N IT+        L NL +L +  +K++         L KL  L L    +         
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL---PEK 118

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLTNLESLNL 186
              +L  L ++  +++      F+ +  + V+ LG N +    + +   +G+  L  + +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
               I     +      +L  L L   ++       L GL NL  + LSF  IS      
Sbjct: 179 ADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
           LA    L+ L+L+  ++       L     +  + L    I+            + S + 
Sbjct: 236 LANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNIS-----------AIGSNDF 283

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVSLNVSNSR 359
           C  G            +S + ++L  N  +    ++      +    ++ + N +
Sbjct: 284 CPPGYNT-------KKASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 54/286 (18%), Positives = 107/286 (37%), Gaps = 23/286 (8%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
            +   L  + N  IT      F  L NL  L L     ++I  G      L+KLE L + 
Sbjct: 52  PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGA--FAPLVKLERLYLS 108

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
             N + +    P      L+ L++  +++T    +   GL ++ ++ L   P+ ++ +++
Sbjct: 109 K-NQLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 127 --LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
                +  L Y+ +    ++           SL  L+L  N+IT      LKGL NL  L
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD 241
            L    I      +L    +L+ L L++ ++       L+    ++ + L     + I  
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 242 GSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDL 282
                       +S   ++L +  +    +  +    +     + L
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 40/302 (13%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
             LL+L+   +T         L +L  L L   ++S      F+ +  L+ L L  N++ 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGL 226
           +   +  K    L+ L +    I         GL  +  +EL    + SSG+ +    G+
Sbjct: 114 E---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             L  I ++ T I+  ++ +     SL  L+LD  +IT    A+L  L  L  L L    
Sbjct: 171 KKLSYIRIADTNIT--TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           I+                 +  G L         +   L  L+L+ N  L      L + 
Sbjct: 228 ISA----------------VDNGSL--------ANTPHLRELHLNNN-KLVKVPGGL-AD 261

Query: 347 LTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
              +  + + N+ I++          +     +   ++L S  V   +I+    R +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 401 VS 402
            +
Sbjct: 322 AA 323

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 47/240 (19%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111

Query: 216 GSSGLRHLSG--LTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-- 268
               L+ L       L+ + +     T +         GL+ +  + L    +  +G+  
Sbjct: 112 ----LKELPEKMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVELGTNPLKSSGIEN 164

Query: 269 AALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
            A   +  L+++ +    IT    G                                SLT
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGL-----------------------------PPSLT 195

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
            L+L  N  +T      + GL  L  L +S + I++     L    +LR L L + K+  
Sbjct: 196 ELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 22/182 (12%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 287 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 342
           + +           K L+ L +    +T         L+ + ++ L  N  L    +E  
Sbjct: 112 LKELPEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENG 165

Query: 343 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
              G+  L  + ++++ IT+   GL       +L  L L+      N I ++ +  L  L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDG-----NKITKVDAASLKGL 215

Query: 401 VS 402
            +
Sbjct: 216 NN 217

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.1 bits (213), Expect = 2e-18
 Identities = 57/338 (16%), Positives = 117/338 (34%), Gaps = 20/338 (5%)

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
           + +   +   + +  +         N+K L +S + ++    A L    KL LLNL    
Sbjct: 11  RYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
           +       L +L +L  L+LN   + +          S++ L+   N I+    V     
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSRG 119

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFT 237
              +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL + 
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 238 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
            I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A LR 
Sbjct: 180 FIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-LRF 235

Query: 298 FKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
            +NL   ++ G G               +  +       LT +  E     T     +  
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE---CTVPTLGHYG 292

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 394
                         L  L+           ++ +RL+ 
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 48/321 (14%), Positives = 110/321 (34%), Gaps = 16/321 (4%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 141
               K  +++ S +  +  +  +    +  L+L G P++      L+    L  LNL+  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 142 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 201
            L +        + +L+ L+L  N + +     L    ++E+L+  +  I     V+ + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSR 118

Query: 202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDA 260
               K + L++ ++           + ++ ++L    I   +  +LA    +L+ LNL  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
             I D  +        L  LDL   ++   G    ++   +  + +    L     K ++
Sbjct: 179 NFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALR 234

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTL 379
              +L   +L  N        +  S    + ++   +  ++T                  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 380 ESCKVTANDIKRLQSRDLPNL 400
               + A    RL +      
Sbjct: 295 CCEDLPAPFADRLIALKRKEH 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 50/383 (13%), Positives = 123/383 (32%), Gaps = 27/383 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
                N+  L    N  ++       A    L  L+L     ++   ++L+ L  L +L+
Sbjct: 30  RQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLY-ETLDLESLSTLRTLD 86

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +   N + +     L    ++++L  + + ++    +  +G +    + L    +T    
Sbjct: 87  LNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRD 137

Query: 125 DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
                   + YL+L   ++   +  E  +   +L+ LNL +N I D  +        L++
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKT 195

Query: 184 LNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 241
           L+L S  +        +      +  + L + ++     + L    NLE  +L   G   
Sbjct: 196 LDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 242 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
           G+LR      + +   +  + +           T  T          D  A +      L
Sbjct: 252 GTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 302 RSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
           +  E        +  + ++    + +    ++  +         ++       ++L    
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQKK 369

Query: 358 SRITSAGLRHLKPLKNLRSLTLE 380
             +        +    L     +
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQ 392

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.7 bits (207), Expect = 1e-17
 Identities = 56/408 (13%), Positives = 114/408 (27%), Gaps = 28/408 (6%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMK 59
            E     +         ++ +            N+ +LDL     ++I      L    K
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAAD--LAPFTK 59

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           LE LN+   N +   +   L  L+ L++L ++ + V +     L     +  L+     +
Sbjct: 60  LELLNLSS-NVLY--ETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI 111

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-L 178
           +     S S       + L   +++            ++ L+L  NEI       L    
Sbjct: 112 SRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
             LE LNL    I    +        LK L+LS  ++   G         +  I+L    
Sbjct: 169 DTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNK 225

Query: 239 ISDGSLRKLAGLSSLKSLNLDARQI-TDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR 296
           +     + L    +L+  +L        T     +    +  +      ++T        
Sbjct: 226 LVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 356
                     C   L       +  L       LS   + T++             ++  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 357 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 404
             +  +   +     +   +L  +        +    S          
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKK-----KALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 52/422 (12%), Positives = 111/422 (26%), Gaps = 45/422 (10%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +L  LS L +L    N       ++      ++  L       I    V+       +++
Sbjct: 75  DLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN-NNISR--VSCSRGQGKKNI 125

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 122
            +   N IT          + ++ L +  +++   +          L  LNL+   +   
Sbjct: 126 YLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 182
            +        L  L+L+  +L+  G  +F     +  ++L  N++       L+   NLE
Sbjct: 184 -VKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 183 SLNLD----SCGIGDEGLVNLTGLCNLKC-------------------LELSDTQVGSSG 219
             +L      CG   +       +  +                                 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLT 275
                 L  L+    +          +L       +  + ++    Q             
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
               L+     + +  +   R    L        G  +      ++ S L LL       
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRY 419

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 393
                 +       +   ++   + T        LK L     L L S   T  ++   +
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479

Query: 394 SR 395
             
Sbjct: 480 QN 481

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 19/193 (9%), Positives = 44/193 (22%), Gaps = 16/193 (8%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE----RCTRIHGGLVNLKGLM 58
                 + +T +S R N  +  +  KA     NL   DL      C  +       + + 
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            +          +     +     T             D    +   L  L         
Sbjct: 266 TVA------KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 119 VTAACLDSLSA----LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 174
              +  + L            ++  + Q      +   +  +   L      + ++    
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 175 LKGLTNLESLNLD 187
            +    L+     
Sbjct: 380 RRAHAELDGTLQQ 392

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 6e-17
 Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 22/285 (7%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
            + T L  + N+ I+      F GL +L  L L     ++IH        L KL+ L I 
Sbjct: 54  PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKLYIS 110

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
             N + +    P +  ++L  L+I  +++         GL+ +  + + G P+  +  + 
Sbjct: 111 K-NHLVEI---PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 127 LSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 185
            +  G  L YL ++  +L+    +      +L  L+L  N+I    L  L   + L  L 
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDG 242
           L    I      +L+ L  L+ L L + ++ S     L  L  L+ + L     T +   
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 243 S---LRKLAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDL 282
               +      +    ++L    +    +       +T    +  
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 37/298 (12%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
            TLL+L+   ++    D    L  L+ L L   ++S    + FS +  L+ L +  N + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +   +     ++L  L +    I        +GL N+ C+E+                  
Sbjct: 116 E---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-------------- 158

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
                L  +G   G+   L     L  L +   ++T        +L     L L   +I 
Sbjct: 159 -----LENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQ 206

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 348
                 L  +  L  L +    +       +  L +L  L+L  N  L+     L   L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL-PDLK 264

Query: 349 GLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            L  + +  + IT         +           ++L +  V   +++    R + + 
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 6e-16
 Identities = 58/269 (21%), Positives = 94/269 (34%), Gaps = 28/269 (10%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 62
             GL +L +L    NN I+    KAF+ L  L KL +       I   L        L  
Sbjct: 74  FKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVE 127

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVT 120
           L I   N I        SGL N+  +++  + + +SG       GL KL  L +    +T
Sbjct: 128 LRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
               D    L  L +L+ N+ Q  +       +   L  L LG N+I       L  L  
Sbjct: 186 GIPKDLPETLNEL-HLDHNKIQAIELED--LLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 181 LESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGS------SGLRHLSGLTNLESI 232
           L  L+LD+  +     GL +L     L+ + L    +          +           I
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLK---LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 233 NLSFTGISDGSLRKLA--GLSSLKSLNLD 259
           +L    +    ++      ++   ++   
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 17/266 (6%)

Query: 103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
            KGLQ L  L L    ++     + S L  L  L +++  L +      S   SL  L +
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRI 130

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLR 221
             N I         GL N+  + +    + + G          L  L +S+ ++      
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 281
               L  L   +     I    L      S L  L L   QI      +L+ L  L  L 
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 282 LFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGVKHIKDLSSLTLLNLSQNCN 335
           L   +++    A L + K L+ + +    +T         V      +    ++L  N  
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-P 305

Query: 336 LTDKTLE--LISGLTGLVSLNVSNSR 359
           +    ++      +T  +++   N +
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 23/182 (12%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +   ++L    IS+       GL  L +L L   +I+     A + L  L  L +    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 287 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 342
           + +            +L  L I    +          L ++  + +  N  L +   E  
Sbjct: 114 LVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPG 167

Query: 343 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
              GL  L  L +S +++T     L      + L  L L+      N I+ ++  DL   
Sbjct: 168 AFDGLK-LNYLRISEAKLTGIPKDL-----PETLNELHLDH-----NKIQAIELEDLLRY 216

Query: 401 VS 402
             
Sbjct: 217 SK 218

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 8e-17
 Identities = 51/233 (21%), Positives = 87/233 (37%), Gaps = 11/233 (4%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSC 189
           S   L L   +L       F K+  L  L+L  N ++    C     G T+L+ L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 190 GIGD--EGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRK 246
           G+       + L     L+ L+   + +   S       L NL  +++S T         
Sbjct: 89  GVITMSSNFLGLE---QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 247 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 305
             GLSSL+ L +       +      T L  LT LDL   ++         +  +L+ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSN 357
           +             K L+SL +L+ S N ++     + +    + L  LN++ 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 54/235 (22%), Positives = 90/235 (38%), Gaps = 16/235 (6%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGSLKVLNLGFNE 166
            T L LE   + +        L  L  L+L+   LS  GC         SLK L+L FN 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIG---DEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
           +      +  GL  LE L+     +    +  +     L NL  L++S T    +     
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 224 SGLTNLESINLSF----TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +GL++LE + ++                  L +L  L+L   Q+      A  SL+ L  
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQN 333
           L++             +   +L+ L+     +  +  + ++   SSL  LNL+QN
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 7/188 (3%)

Query: 5   LSGLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLE 61
              L+ LT LS   N  +      ++  G  +L  LDL       +        GL +LE
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLE 104

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
            L+ +  N    S+      L NL  L IS +    +      GL  L +L + G     
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 122 ACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
             L D  + L +L +L+L++CQL       F+ + SL+VLN+  N          K L +
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 181 LESLNLDS 188
           L+ L+   
Sbjct: 225 LQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 54/258 (20%), Positives = 89/258 (34%), Gaps = 36/258 (13%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
           S+ T L    N  + +     F  L  L KL L                           
Sbjct: 28  SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSS------------------------- 61

Query: 69  NCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLD 125
           N ++          G T+LK L +S + V     +   GL++L  L+ +   +   +   
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESL 184
              +L +L YL+++           F+ + SL+VL +  N   +  L      L NL  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF---TGISD 241
           +L  C +          L +L+ L +S     S        L +L+ ++ S         
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 242 GSLRKLAGLSSLKSLNLD 259
             L+     SSL  LNL 
Sbjct: 241 QELQHF--PSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 9/202 (4%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDAR 261
           +   LEL   ++ S        LT L  ++LS  G+S       +  G +SLK L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
            +     +    L  L HLD   + +   S  +   + +NL  L+I       A      
Sbjct: 89  GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 380
            LSSL +L ++ N    +   ++ + L  L  L++S  ++          L +L+ L + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 381 SCKVTANDIKRLQSRDLPNLVS 402
                 N+   L +     L S
Sbjct: 208 H-----NNFFSLDTFPYKCLNS 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 5/168 (2%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLM 58
           M+ N  GL  L  L F+ +N         F  L NL+ LD+          G+    GL 
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLS 150

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 118
            LE L +   +   +      + L NL  L +S  ++          L  L +LN+    
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 119 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFN 165
             +        L SL  L+ +   +     ++      SL  LNL  N
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 12/180 (6%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDLFG 284
           ++   + L    +          L+ L  L+L +  ++  G    +    T L +LDL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLTDKTL 341
             +    +      + L  L+     L    +  V     L +L  L++S   +      
Sbjct: 88  NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT-HTRVAFN 143

Query: 342 ELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
            + +GL+ L  L ++ NS   +        L+NL  L L  C++    +       L +L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSL 201

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 9e-17
 Identities = 90/393 (22%), Positives = 144/393 (36%), Gaps = 19/393 (4%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMK 59
            +L   S L  L+   N       +     L +L  LDL   +       G V   G  +
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           L+ L I     I+      +S   NL+ L +S +  +   I +L     L  L++ G  +
Sbjct: 180 LKHLAISGNK-ISGD--VDVSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKL 235

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-L 178
           +     ++S    L  LN++  Q    G      + SL+ L+L  N+ T E    L G  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT 237
             L  L+L                  L+ L LS     G   +  L  +  L+ ++LSF 
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 238 GISDG---SLRKLAGLSSLKSLNLDARQITDTGLAAL--TSLTGLTHLDLFGARITDSGA 292
             S     SL  L   +SL +L+L +   +   L  L       L  L L     T    
Sbjct: 354 EFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
             L N   L SL +    L+      +  LS L  L L  N  L  +  + +  +  L +
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLET 470

Query: 353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
           L +  + +T      L    NL  ++L + ++T
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 73/369 (19%), Positives = 145/369 (39%), Gaps = 20/369 (5%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL---VNLKGLMKL 60
           +L  L+ L SL    ++   +  +  F    +L  LDL R   + G +    +L     L
Sbjct: 72  SLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRN-SLSGPVTTLTSLGSCSGL 128

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS---GIAYLKGLQKLTLLNLEGC 117
           + LN+          +     L +L+ L +S + ++ +   G     G  +L  L + G 
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 118 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 177
            ++      +S   +L +L+++    S           +L+ L++  N+++ +    +  
Sbjct: 189 KISGD--VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF 236
            T L+ LN+ S      G +    L +L+ L L++ +  G            L  ++LS 
Sbjct: 246 CTELKLLNISSNQF--VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYL 295
                         S L+SL L +   +    +  L  + GL  LDL     +      L
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 296 RNFK-NLRSLEICGGGLTDAGVKHI--KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
            N   +L +L++     +   + ++     ++L  L L  N   T K    +S  + LVS
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVS 422

Query: 353 LNVSNSRIT 361
           L++S + ++
Sbjct: 423 LHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 59/284 (20%), Positives = 99/284 (34%), Gaps = 35/284 (12%)

Query: 131 GSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLD 187
             +  ++L+   L+       S + S   L+ L L  + I    +   K   +L SL+L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLS 108

Query: 188 SCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLS---FTGISD 241
              +      L +L     LK L +S   +   G +     L +LE ++LS    +G + 
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 242 GSLRKLAGLSSLKSLNLDARQITDT---------------------GLAALTSLTGLTHL 280
                  G   LK L +   +I+                       G+  L   + L HL
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK- 339
           D+ G +++   +  +     L+ L I        G      L SL  L+L++N   T + 
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAEN-KFTGEI 285

Query: 340 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 383
              L      L  L++S +    A          L SL L S  
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 72/395 (18%), Positives = 138/395 (34%), Gaps = 56/395 (14%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLI---------NLVKLDLERCTRIHGGL- 51
            + L  +  L  L    N          F+G +         +L+ LDL       G + 
Sbjct: 336 MDTLLKMRGLKVLDLSFNE---------FSGELPESLTNLSASLLTLDLSSN-NFSGPIL 385

Query: 52  --VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 109
             +       L+ L ++  N  T      LS  + L SL +S + ++ +  + L  L KL
Sbjct: 386 PNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 169
             L L    +       L  + +L  L L+   L+ +     S   +L  ++L  N +T 
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 170 ECLVHLKGLTNLESLNLDS--------CGIGD-EGLV-------NLTG-----LCNLKCL 208
           E    +  L NL  L L +          +GD   L+          G     +      
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-G 563

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--KLAGLSSLKSLNLDARQITDT 266
           +++   +      ++      +  + +   +    +R  +L  LS+    N+ +R     
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 267 GLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 322
                 +   +  LD+        I       + +   L  L +    ++ +    + DL
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
             L +L+LS N  L  +  + +S LT L  +++SN
Sbjct: 680 RGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSN 713

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 56/265 (21%), Positives = 90/265 (33%), Gaps = 35/265 (13%)

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +LS    L  L+L+   LS         +  L+ L L  N +  E    L  +  LE+L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 185 NLDSCGIGDE---GLVNLTGLCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLS---F 236
            LD   +  E   GL N T   NL  + LS+ ++  +G   + +  L NL  + LS   F
Sbjct: 472 ILDFNDLTGEIPSGLSNCT---NLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSF 526

Query: 237 TGI---SDGSLRKL---------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 278
           +G      G  R L               A +    S  + A  I       + +     
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKK 585

Query: 279 HLDLFGARITDSGA--AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 336
                G  +   G     L          I              +  S+  L++S N  L
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-ML 644

Query: 337 TDKTLELISGLTGLVSLNVSNSRIT 361
           +    + I  +  L  LN+ ++ I+
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDIS 669

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 25/280 (8%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
             + SL    N  IT          +NL  L L       I         L  LE L++ 
Sbjct: 52  EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDLS 108

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCP-VTAACL 124
           + N +++        L++L  L +  +        +    L KL +L +      T    
Sbjct: 109 Y-NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
              + L  L  L ++   L     +    I ++  L L   +      + +   +++E L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 244
            L    +       L+                ++ L       N++  + S   +     
Sbjct: 228 ELRDTDLDTFHFSELSTGE-------------TNSLIKKFTFRNVKITDESLFQVMKL-- 272

Query: 245 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
             L  +S L  L     Q+          LT L  + L  
Sbjct: 273 --LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 59/279 (21%), Positives = 112/279 (40%), Gaps = 28/279 (10%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 168
           +  L+L    +T      L    +L  L L    ++    + FS +GSL+ L+L +N ++
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 169 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
           +      K L++L  LNL                   K L  +      S L  L  L  
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN--------------PYKTLGETSL---FSHLTKLQILRV 156

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 288
                 +FT I        AGL+ L+ L +DA  +      +L S+  ++HL L   +  
Sbjct: 157 GN--MDTFTKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--QNCNLTDKTL----E 342
                ++    ++  LE+    L       +    + +L+     +N  +TD++L    +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L++ ++GL+ L  S +++ S        L +L+ + L +
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 213
           ++K L+L  N IT      L+   NL++L L S GI   +E     + L +L+ L+LS  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDLSYN 110

Query: 214 QVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 269
            + +        L++L  +NL    +  + + SL   + L+ L+ L +      T     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRK 168

Query: 270 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 329
               LT L  L++  + +       L++ +N+  L +            +   SS+  L 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 330 LSQN-------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 382
           L            L+      +       ++ +++  +    ++ L  +  L  L     
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRN 287

Query: 383 KVTA 386
           ++ +
Sbjct: 288 QLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 50/261 (19%), Positives = 96/261 (36%), Gaps = 29/261 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
           L    NL +L    +N I      +F+ L +L  LDL     + +       K L  L  
Sbjct: 72  LQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW--FKPLSSLTF 128

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           LN+      T  +    S LT L+ L++ +    T        GL  L  L ++   + +
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
               SL ++ ++ +L L+  Q             S++ L L   ++      H   L+  
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT---FHFSELSTG 245

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTG 238
           E+              +L      + ++++D  +    ++ L+ ++ L  +  S      
Sbjct: 246 ETN-------------SLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS 291

Query: 239 ISDGSLRKLAGLSSLKSLNLD 259
           + DG       L+SL+ + L 
Sbjct: 292 VPDGI---FDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 7e-11
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 12/203 (5%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
            +K L+LS+ ++       L    NL+++ L+  GI+       + L SL+ L+L    +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI----CGGGLTDAGVKHI 319
           ++   +    L+ LT L+L G      G   L  F +L  L+I         T    K  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L+ L  L +  + +L     + +  +  +  L +   +        +    ++  L L
Sbjct: 171 AGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 380 ESCKVTANDIKRLQSRDLPNLVS 402
                   D+      +L    +
Sbjct: 230 RD-----TDLDTFHFSELSTGET 247

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 68/404 (16%), Positives = 136/404 (33%), Gaps = 25/404 (6%)

Query: 2   TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 61
           T ++  LS L  L    +N I    +  F     L  LDL    ++    ++    + L+
Sbjct: 38  TSDILSLSKLRILII-SHNRIQYLDISVFKFNQELEYLDLSH-NKLVK--ISCHPTVNLK 93

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL-LNLEGCPVT 120
            L++ +         K    ++ LK L +S + +  S +  +  L    + L L      
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 121 AACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
               + L      SL  +     +           + +L++ N+      ++C   L  L
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 179 TNLE------SLNLDSCGIGDEGLV---NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 229
             L+      +L L++        +    L     +    +S+ ++           +  
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 230 ESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
               LS   +                S++   N          +   + ++   HLD   
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 285 ARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
             +TD+      +   L +L +    L       +    + SL  L++SQN    D+   
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
             S    L+SLN+S++ +T    R L     ++ L L S K+ +
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS 435

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 10/241 (4%)

Query: 51  LVNLKGLMKLESLNIKWCNCITDSDMKPLSG----LTNLKSLQISCSKVTDSGIAYLKGL 106
           ++ L     +   +I         D +        L  L   Q+             +  
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
             + + N          +   S +    +L+ +   L+D   E    +  L+ L L  N+
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 167 IT--DECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 223
           +    +       + +L+ L++    +  DE   + +   +L  L +S   +  +  R L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
                ++ ++L    I     +++  L +L+ LN+ + Q+          LT L  + L 
Sbjct: 420 --PPRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 284 G 284
            
Sbjct: 477 T 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 49/326 (15%), Positives = 107/326 (32%), Gaps = 27/326 (8%)

Query: 3   ENLSGLSNLT----SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 58
           E+  GL +       + F  N         +   + NL   +++     +     L  L 
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

Query: 59  KLESLNIKWCNCITDSDMKPLSGLT-------------NLKSLQISCSKVTDSGIAYLKG 105
           KL++        + + +    S +              ++ ++++               
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
           L+ L++  +                 ++   N              SKI     L+   N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 166 EITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLR-H 222
            +TD    +   LT LE+L L    +    +     T + +L+ L++S   V     +  
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHL 280
            S   +L S+N+S   ++D   R L     +K L+L + +I      +  L +L     L
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQ---EL 449

Query: 281 DLFGARITDSGAAYLRNFKNLRSLEI 306
           ++   ++            +L+ + +
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 43/271 (15%), Positives = 87/271 (32%), Gaps = 6/271 (2%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
               LN+++  +S+        +  L++L +  N I    +   K    LE L+L    +
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 192 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGL 250
                ++     NLK L+LS     +  +      ++ L+ + LS T +   S+  +A L
Sbjct: 82  VK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
           +  K L +      +        L       L     T+    ++ +        +    
Sbjct: 139 NISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 370
           +      +        L  L  N  L++ TL  I          +     T+     +  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 371 LKNLRSLTLESCKVTANDIKRLQSRDLPNLV 401
           +K    L       +   +K L    + + V
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 6/162 (3%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESL 63
           S +S    L F  NN +T    +    L  L  L L+      +         +  L+ L
Sbjct: 321 SKISPFLHLDFS-NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +I   +   D      S   +L SL +S + +TD    +     ++ +L+L    + +  
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD--TIFRCLPPRIKVLDLHSNKIKSIP 437

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
              +  L +L  LN+   QL       F ++ SL+ + L  N
Sbjct: 438 -KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 24/226 (10%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           + + + L  N I+       +   NL  L L S  +        TGL  L+ L+LSD   
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 275
                            N     +   +     GL  L +L+LD   + + G      L 
Sbjct: 90  -----------------NAQLRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L +L L    +        R+  NL  L + G  ++    +  + L SL  L L QN  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-R 188

Query: 336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           +          L  L++L +  + +++     L PL+ L+ L L  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 50/229 (21%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
           +    +    N  I+     +F    NL  L L      RI        GL  LE L+  
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAA--FTGLALLEQLD-- 86

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
                       LS    L+S+  +             GL +L  L+L+ C +       
Sbjct: 87  ------------LSDNAQLRSVDPAT----------FHGLGRLHTLHLDRCGLQELGPGL 124

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
              L +L YL L    L     + F  +G+L  L L  N I+       +GL +L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
               +          L  L  L L    + +     L+ L  L+ + L+
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 9/207 (4%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 191
           +   + L+  ++S      F    +L +L L  N +         GL  LE L+L     
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 192 GDEGLVNL-----TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 246
            +  L ++      GL  L  L L    +   G     GL  L+ + L    +       
Sbjct: 90  -NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 247 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 306
              L +L  L L   +I+     A   L  L  L L   R+        R+   L +L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQN 333
               L+    + +  L +L  L L+ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 7/201 (3%)

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-R 261
              + + L   ++            NL  + L    ++        GL+ L+ L+L    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 262 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 321
           Q+     A    L  L  L L    + + G    R    L+ L +    L        +D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L +LT L L  N  ++        GL  L  L +  +R+        + L  L +L L +
Sbjct: 152 LGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 382 CKVTANDIKRLQSRDLPNLVS 402
                N++  L +  L  L +
Sbjct: 211 -----NNLSALPTEALAPLRA 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
            +GL+ L  L    N  + +     F GL  L  L L+RC    +  GL   +GL  L+ 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQY 133

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
           L ++  N +          L NL  L +  ++++       +GL  L  L L    V   
Sbjct: 134 LYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 123 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
              +   LG L  L L    LS    E  + + +L+ L L  N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 7/187 (3%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE---RCTRIHGGLVNLKGLMKLE 61
                NLT L    N  +      AF GL  L +LDL    +   +        GL +L 
Sbjct: 52  FRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT--FHGLGRLH 108

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 121
           +L++     + +       GL  L+ L +  + +        + L  LT L L G  +++
Sbjct: 109 TLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
               +   L SL  L L++ +++      F  +G L  L L  N ++      L  L  L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 182 ESLNLDS 188
           + L L+ 
Sbjct: 228 QYLRLND 234

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN----LESINL 234
            +++++     I   G  ++ GL  ++ + L     +    L  LS L N    +  + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 235 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 282
                ++D  +  L    +LK L L D   + +         T L  L+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 71.4 bits (175), Expect = 6e-15
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 30  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN----L 85
                 +  +D      +  G  +++GL  +E + +  C+ I D  ++ LS L N    +
Sbjct: 57  PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 86  KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 139
             ++I  C  VTD GI  L   + L  L L   P V        +   SL  L L 
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 201 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS----SLKS 255
               ++ ++ +D+ + S G  H+ GL  +E I L     I DG L +L+ L     S+  
Sbjct: 59  DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118

Query: 256 LNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 306
           + + +   +TD G+ AL     L +L L     + +          +L SLE+
Sbjct: 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 66.4 bits (162), Expect = 3e-13
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 70  CITDSDMKPLSGLTNLK--SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 126
              D +  P   L   K  ++  + S +   G  +++GLQ +  + L  C  +   CL+ 
Sbjct: 46  WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER 105

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           LS L +L    L   ++    C                  +TD+ ++ L    NL+ L L
Sbjct: 106 LSQLENLQKSML---EMEIISCGN----------------VTDKGIIALHHFRNLKYLFL 146

Query: 187 DSC-GIGDEGLVNLTGLCNLKCLELS 211
               G+ ++  +      +L  LEL 
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG----LVSLNV 355
            +++++     +   G  H++ L  +  + L +   + D  LE +S L      ++ + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 356 SN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRD-LPNL 400
            +   +T  G+  L   +NL+ L L     V   +      +  LP+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 286
            +++I+ + + I       + GL  ++ + L     I D  L  L+ L  L         
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK------- 114

Query: 287 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 345
                        ++  +EI   G +TD G+  +    +L  L LS    + +K   + +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 346 GLTGLVSLNVS 356
             T L SL + 
Sbjct: 162 FKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMK----LESLNIKWCNCITD 73
           ++ I + G     GL  + K+ L +C  I  G L  L  L      +  + I  C  +TD
Sbjct: 70  DSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129

Query: 74  SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 115
             +  L    NLK L +S    V +           L  L L+
Sbjct: 130 KGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 14/97 (14%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLIN----LVKLDLERCTRI-HGGLVNLK 55
             +++ GL  +  +   + + I    ++  + L N    ++++++  C  +   G++ L 
Sbjct: 77  GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136

Query: 56  GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
               L+ L +     + + +    +  T+L SL++  
Sbjct: 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 76.1 bits (186), Expect = 2e-15
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 54  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-----AYLKGLQK 108
           L  +  L +L IK  N ++           NLKSL+I    + DS +     + L  L+K
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 109 LTL---LNLEGCPVTAACLDSL---SALGSLFYLNLNRCQLSDDGCEKFSK---IGSLKV 159
           L L   +   G          L       +L +L +   +  +   E F +   +  L+ 
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 160 LNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 214
           +++    +TDE     L H+  + +L+ +N+    + DE    L     +K +++SD+Q
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 63.8 bits (154), Expect = 2e-11
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTG--LCNLKCLEL---SDTQVGSSGLRHLSGL------ 226
             NL+SL + S G+ D  + ++ G  L NL+ L L    +       +     L      
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 227 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAAL----TSLTGLTH 279
            NL+ + +      +  +        L  L+++++ A  +TD G   L      +  L  
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 280 LDLFGARITDSGAAYLRN 297
           +++    ++D     L+ 
Sbjct: 312 INMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 63.4 bits (153), Expect = 3e-11
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 29/190 (15%)

Query: 175 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESI 232
           L  +  L +L +        G        NLK LE+    +  S +  +  S L NLE +
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
            L       G    +     L                +      L  L +  A   +   
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPL---------------FSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 293 AYL---RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLE-LI 344
                      L +++I  G LTD G + +      +  L  +N+  N  L+D+  + L 
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328

Query: 345 SGLTGLVSLN 354
             L   + ++
Sbjct: 329 KSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 60.0 bits (144), Expect = 4e-10
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 41/197 (20%)

Query: 221 RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGL 277
             L  +  L ++ +  T  +S G         +LKSL + +  + D+ +  +    L  L
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 278 THLDLFGAR---ITDSGAAYL------RNFKNLRSLEICGGGLTDAGVKHI---KDLSSL 325
             L L+        D              F NL+ L I      +  V+       L  L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
             +++S    LTD+   L+                    L H+  +K+L+ + ++   ++
Sbjct: 282 ETMDISAG-VLTDEGARLL--------------------LDHVDKIKHLKFINMKYNYLS 320

Query: 386 ANDIKRLQSRDLPNLVS 402
               K LQ   LP  + 
Sbjct: 321 DEMKKELQKS-LPMKID 336

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 63/402 (15%), Positives = 124/402 (30%), Gaps = 29/402 (7%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL----ERCTRIHGGLVNLKGLMKL 60
           L+    +T LS       + +   A   L  L  L L    E+      G   +   M  
Sbjct: 77  LNSNGRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 61  ESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
           E       +      D  P    ++L    I+      S     +   K T +      +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 179
           T     ++  L  L    +       +   +  +  + +       +  D    +LK LT
Sbjct: 196 TFVS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ--YKTEDLKWDNLKDLT 252

Query: 180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--------VGSSGLRHLSGLTNLES 231
           ++E  N  +       L  L     ++ + ++  +             L        ++ 
Sbjct: 253 DVEVYNCPNLTKLPTFLKALP---EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 232 INLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           I + +  +    +   L  +  L  L     Q+    L A  S   L  L+L   +IT+ 
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQITEI 368

Query: 291 GAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQN------CNLTDKTLEL 343
            A +    + + +L      L     +   K +S ++ ++ S N          D     
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 344 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
                 + S+N+SN++I+            L S+ L    +T
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 60/397 (15%), Positives = 127/397 (31%), Gaps = 45/397 (11%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
              L +LT +       +T         L  +  +++    R   G         L    
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACN-RGISGEQLKDDWQALADA- 301

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAAC 123
                               ++ + I  + +    +   L+ ++KL +L      +    
Sbjct: 302 ---------------PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-K 345

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLE 182
           L +  +   L  LNL   Q+++           ++ L+   N++     +   K ++ + 
Sbjct: 346 LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 183 SLNLDSC---GIGDEGLVNLT----GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
           +++        +  +    L        N+  + LS+ Q+        S  + L SINL 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 236 ---FTGISDGSLRK----LAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARI 287
               T I   SL+           L S++L   ++T        T+L  L  +DL     
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 288 TD-----SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 342
           +        ++ L+ F      +  G        + I    SLT L +  N ++     +
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK 584

Query: 343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
           +      +  L++ ++   S  L ++ P        L
Sbjct: 585 I---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 55/350 (15%), Positives = 108/350 (30%), Gaps = 48/350 (13%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
           +      +  +    NN  T     +   +  L  L+     ++ G L      +KL SL
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASL 358

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT-- 120
           N+   N IT+           +++L  + +K+     I   K +  ++ ++     +   
Sbjct: 359 NL-AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 121 -----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD------ 169
                     +     ++  +NL+  Q+S    E FS    L  +NL  N +T+      
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 170 -ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 228
            +   + K    L S++L            LT L +    +              + L  
Sbjct: 478 KDENENFKNTYLLTSIDLRFN--------KLTKLSD----DFR-----------ATTLPY 514

Query: 229 LESINLS---FTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 283
           L  I+LS   F+       +   L G       +    +        +T    LT L + 
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
              I            N+  L+I         + ++       +  L  +
Sbjct: 575 SNDIRKVNEK---ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 33/275 (12%), Positives = 85/275 (30%), Gaps = 26/275 (9%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH----LKGLTNL 181
           SL++ G +  L+L     S    +   ++  L+VL LG +       +     +    + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 182 ESLNLDSCG-----IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
           E             +  +   + + L           +      R     T +  ++ + 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 296
           T +S      +  L+ L+   +         +          +   +      +      
Sbjct: 196 TFVSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-----TEDLKWD 246

Query: 297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-------ISGLTG 349
           N K+L  +E+            +K L  + L+N++ N  ++ + L+              
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 350 LVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCK 383
           +  + +  + + +  +   L+ +K L  L     +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 26/234 (11%), Positives = 58/234 (24%), Gaps = 13/234 (5%)

Query: 173 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----VGSSGLRHLSGLTN 228
           V L     +  L+L+  G        +  L  L+ L L            G + +S   +
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGAR 286
            E             +           +               +       T +      
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           IT   +  +     LR   +         +    +  +       +  +L          
Sbjct: 195 IT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK------WDN 247

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
           L  L  + V N    +     LK L  ++ + +   +  + +  +   + L + 
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 34/197 (17%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 60
           +        N++S++   N  I+    + F+    L  ++L                  L
Sbjct: 425 LDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN--------------ML 469

Query: 61  ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGC- 117
             +         ++          L S+ +  +K+T           L  L  ++L    
Sbjct: 470 TEIPKNSLKDENEN----FKNTYLLTSIDLRFNKLTKLSDDFRATT-LPYLVGIDLSYNS 524

Query: 118 ----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--EC 171
               P       +L   G     +    +   +  E  +   SL  L +G N+I    E 
Sbjct: 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584

Query: 172 LVHLKGLTNLESLNLDS 188
           +       N+  L++  
Sbjct: 585 I-----TPNISVLDIKD 596

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 16/234 (6%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLNI 65
            N   L F     +      AF+G  +L K+++ +      I   +     L KL  + I
Sbjct: 30  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRI 86

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP----VTA 121
           +  N +   + +    L NL+ L IS + +      +     +  LL+++       +  
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 122 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 181
                LS       L LN+  + +     F+     ++     N + +       G +  
Sbjct: 147 NSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204

Query: 182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 235
             L++    I       L  L  L+     + +     L  L  L  L   +L+
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKK----LPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 12/233 (5%)

Query: 109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNE 166
              L      +      + S  G L  + +++   L     + FS +  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRH 222
           +        + L NL+ L + + GI     V+         L++ D      +  +    
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 223 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           LS       + L+  GI +       G    +    D   + +         +G   LD+
Sbjct: 152 LS--FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 283 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
              RI    +  L N K LR+       L       ++ L +L   +L+   +
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLTYPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 43/233 (18%), Positives = 72/233 (30%), Gaps = 39/233 (16%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLCNLKCL 208
           +   L     ++         G  +LE + +    + +         L  L  +   K  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 267
            L               L NL+ + +S TGI                L++ D   I    
Sbjct: 91  NLLYINPE-----AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 268 LAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 326
             +   L+     L L    I +                               + + L 
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHN-------------------------SAFNGTQLD 180

Query: 327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
            LNLS N NL +   ++  G +G V L++S +RI S     L+ LK LR+ + 
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 10/137 (7%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVKLDLERC--TRIHGGLVNLKGLMKLES 62
                   L  + N  I      +F GL    V L L +     IH    N   L +L  
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            +    N + +       G +    L IS +++       L+ L+KL   +         
Sbjct: 185 SD---NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY----NLK 237

Query: 123 CLDSLSALGSLFYLNLN 139
            L +L  L +L   +L 
Sbjct: 238 KLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 30/183 (16%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
              L NL  L    N  I           +  V LD++          N+          
Sbjct: 100 FQNLPNLQYLLI-SNTGIKHLPDVHKIHSLQKVLLDIQD---------NIN--------- 140

Query: 65  IKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
                 I   +     GL+     L ++ + + +   +   G Q   L   +   +    
Sbjct: 141 ------IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 183
            D          L+++R ++          +  L+  +        + L  L+ L  L  
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALME 250

Query: 184 LNL 186
            +L
Sbjct: 251 ASL 253

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 70/402 (17%), Positives = 141/402 (35%), Gaps = 27/402 (6%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLE 61
           ++S LS L  L    N  I +     F    +L  LD+      H  L N+    +  L 
Sbjct: 71  DISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVS-----HNRLQNISCCPMASLR 124

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL-LNLEGCPVT 120
            L++ + +       K    LT L  L +S +K     +  +  L    + L+L    + 
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 121 AACLDSLSALGSLF-YLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG- 177
               +SL    +   +L  +   L S       + +G L++ N+  N+   + L+     
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 178 ------LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 231
                 L N+   ++++       L        ++ L + +  +     R     +    
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 232 INLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +L    + +              + +    L         +    S +  T L+     
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
            TDS        K L++L +   GL          K++SSL  L++S N   +       
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 386
           +    ++ LN+S++ +T +  R L P   ++ L L + ++ +
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS 464

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 8/239 (3%)

Query: 100 IAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 157
             + + ++ L + N  +           S +AL SL   ++            +S    +
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 217
            +  L  ++     +V     ++   LN       D      + L  L+ L L    + +
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391

Query: 218 --SGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSL 274
                     +++LE++++S   ++  +  +  A   S+  LNL +  +T +    L   
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
             +  LDL   RI           + L+ L +    L          L+SL  + L  N
Sbjct: 452 --VKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 11/209 (5%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
           S K L+L FN +             L+ L+L  C I          L +L  L L+   +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSL 274
            S  L   SGL++L+ +    T ++      +  L +LK LN+    I    L    ++L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 275 TGLTHLDLFGARITDSGAAYLRNFKNLR----SLEICGGGLT--DAGVKHIKDLSSLTLL 328
           T L HLDL   +I       LR    +     SL++    +     G         L  L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---FKEIRLKEL 205

Query: 329 NLSQNCNLTDKTLELISGLTGLVSLNVSN 357
            L  N  L      +   LT L  + +  
Sbjct: 206 ALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 43/188 (22%), Positives = 69/188 (36%), Gaps = 12/188 (6%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
              +L +L+L  C +      +  +L  L  L L    +       FS + SL+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHL 223
             +       +  L  L+ LN+    I    L    + L NL+ L+LS  ++ S     L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 224 SGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 276
             L  +  +NLS          I  G+ +++     LK L LD  Q+          LT 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTS 225

Query: 277 LTHLDLFG 284
           L  + L  
Sbjct: 226 LQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 12/190 (6%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESL 63
                L  L   R   I      A+  L +L  L L       +  G     GL  L+ L
Sbjct: 49  FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKL 105

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-YLKGLQKLTLLNLEGCPVT-- 120
                N +   +  P+  L  LK L ++ + +    +  Y   L  L  L+L    +   
Sbjct: 106 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 121 -AACLDSLSALGSLFY-LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
               L  L  +  L   L+L+   ++      F +I  LK L L  N++          L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRL 223

Query: 179 TNLESLNLDS 188
           T+L+ + L +
Sbjct: 224 TSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 310
            S K+L+L    +   G  +  S   L  LDL    I        ++  +L +L + G  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 311 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLK 369
           +    +     LSSL  L      NL       I  L  L  LNV+++ I S     +  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 370 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
            L NL  L L S     N I+ +   DL  L  
Sbjct: 147 NLTNLEHLDLSS-----NKIQSIYCTDLRVLHQ 174

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 16/206 (7%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 263
           + K L+LS   +   G         L+ ++LS   I          LS L +L L    I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 264 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIK 320
               L A + L+ L  L      +       + + K L+ L +    +            
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FS 146

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGL----VSLNVSNSRITSAGLRHLKPLKNLRS 376
           +L++L  L+LS N  +       +  L  +    +SL++S + +        K +  L+ 
Sbjct: 147 NLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKE 204

Query: 377 LTLESCKVTANDIKRLQSRDLPNLVS 402
           L L++     N +K +       L S
Sbjct: 205 LALDT-----NQLKSVPDGIFDRLTS 225

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 53/348 (15%), Positives = 101/348 (29%), Gaps = 63/348 (18%)

Query: 33  LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
                 L  +  T +      L    +  + +    +          +   N +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIETRTG 65

Query: 93  SKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
             +      +           L L   P+     D    L  L ++ ++   L +   + 
Sbjct: 66  RALKATADLLEDAT-QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMEL-PDT 122

Query: 151 FSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSC--------GIGD-EGLVN 198
             +   L+ L L  N +          +  L  L  L++ +C         +   +    
Sbjct: 123 MQQFAGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 199 LTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 256
             GL NL+ L L  T + S  + + +L  L +L+  N   + +       +  L  L+ L
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA----IHHLPKLEEL 234

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL--EICGGGLTDA 314
           +L                  L  L L             ++  NL +L  +I        
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLIL-------------KDCSNLLTLPLDIH------- 274

Query: 315 GVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRIT 361
                  L+ L  L+L    NL+   L  LI+ L     + V      
Sbjct: 275 ------RLTQLEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 53/299 (17%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 106 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 165
                 L  +G        D LS     +  + NR   +     + +   + ++      
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQIETRTGR 66

Query: 166 EITD--ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLR 221
            +    + L          +L L S  +    +    L+   +L+ + +         L 
Sbjct: 67  ALKATADLLEDAT-QPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG-----LM 117

Query: 222 HL----SGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITD--------TG 267
            L         LE++ L+   +   +L   +A L+ L+ L++    ++T+          
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
                 L  L  L L    I    A+ + N +NL+SL+I    L+  G   I  L  L  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIHHLPKLEE 233

Query: 328 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS--AGLRHLKPLKNLRSLTLESCK 383
           L+L   C        +  G   L  L + + S + +    +     L  L  L L  C 
Sbjct: 234 LDLR-GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR---LTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 29/203 (14%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKL 60
           +    LS+L  ++      +             L  L L R     +   + +L    +L
Sbjct: 98  DQAFRLSHLQHMTIDAAGLMELP--DTMQQFAGLETLTLARNPLRALPASIASLN---RL 152

Query: 61  ESLNIKWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLT 110
             L+I+ C  +T+               GL NL+SL++  + +    + IA L+    L 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ---NLK 209

Query: 111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEIT- 168
            L +   P++ A   ++  L  L  L+L  C    +    F     LK L L   + +  
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 169 --DECLVHLKGLTNLESLNLDSC 189
              +    +  LT LE L+L  C
Sbjct: 269 LPLD----IHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 35/240 (14%)

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 232
           H    +  E+L           L      L   +    +D           +   N +  
Sbjct: 7   HHHHSSGRENLYFQGS----TALRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIE 61

Query: 233 NLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARIT- 288
             +   +      L          +L L +  +           L+ L H+ +  A +  
Sbjct: 62  TRTGRALKATADLLEDAT-QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLME 118

Query: 289 --DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-------- 338
             D+    ++ F  L +L +    L       I  L+ L  L++     LT+        
Sbjct: 119 LPDT----MQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 339 KTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTA--NDIKRLQS 394
                  GL  L SL +  + I S  A + +   L+NL+SL + +  ++A    I  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIAN---LQNLKSLKIRNSPLSALGPAIHHLPK 230

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 43/275 (15%), Positives = 77/275 (28%), Gaps = 50/275 (18%)

Query: 121 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 180
            +             L            +  S+       +                  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 181 LESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 234
            +        +    + L + T       LEL         L         L++L+ + +
Sbjct: 58  PQIETRTGRALKATADLLEDAT-QPGRVALELRSVP-----LPQFPDQAFRLSHLQHMTI 111

Query: 235 SFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGA 292
              G+    L   +   + L++L L    +    L A++ SL  L  L            
Sbjct: 112 DAAGLM--ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELS----------- 156

Query: 293 AYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTG 349
             +R    L  L   +     +       + L +L  L L     +   +L   I+ L  
Sbjct: 157 --IRACPELTELPEPLASTDASGE----HQGLVNLQSLRLEWT-GIR--SLPASIANLQN 207

Query: 350 LVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESC 382
           L SL + NS +++    + H   L  L  L L  C
Sbjct: 208 LKSLKIRNSPLSALGPAIHH---LPKLEELDLRGC 239

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 8/128 (6%)

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS 217
           ++ L    I                L+L    I   E L     L     ++ SD ++  
Sbjct: 1   MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDNEIRK 56

Query: 218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTG 276
             L     L  L+++ ++   I          L  L  L L    + +   L  L SL  
Sbjct: 57  --LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 277 LTHLDLFG 284
           LT+L +  
Sbjct: 115 LTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 6/119 (5%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
              +       L  R       + + A   L     +D      I   L     L +L++
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRK-LDGFPLLRRLKT 68

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 120
           L +   N I          L +L  L ++ + + +   +  L  L+ LT L +   PVT
Sbjct: 69  LLVN-NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 315
           + L A  I     A  T+      LDL G +I               +++     +    
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRK-- 56

Query: 316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNL 374
           +     L  L  L ++ N  +      L   L  L  L ++N+ +     L  L  LK+L
Sbjct: 57  LDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 375 RSLTLESCKVT 385
             L +    VT
Sbjct: 116 TYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 100 IAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 158
            A      +   L+L G  +    +++L + L     ++ +  ++     + F  +  LK
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLK 67

Query: 159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 212
            L +  N I        + L +L  L L +  + +   L  L  L +L  L +  
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
            +     + L +   K+    I  L   L +   ++     +    LD    L  L  L 
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 191
           +N  ++   G      +  L  L L  N + +   L  L  L +L  L +    +
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
             N    R L++ G  +    ++++   L     ++ S N     + L+    L  L +L
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTL 69

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 402
            V+N+RI   G    + L +L  L L +  +    D+  L    L +L  
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL--ASLKSLTY 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 58/293 (19%), Positives = 95/293 (32%), Gaps = 66/293 (22%)

Query: 106 LQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 163
                +LN+         L +L       +  L +    L+            L+ L + 
Sbjct: 39  NNGNAVLNVGESG-----LTTLPDCLPAHITTLVIPDNNLTSLPAL----PPELRTLEVS 89

Query: 164 FNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 222
            N++T   L V   GL  L   +     +             L  L +   Q     L  
Sbjct: 90  GNQLTS--LPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQ-----LTS 135

Query: 223 L-SGLTNLESINLSFTGISD-----GSLRKL-----------AGLSSLKSLNLDARQITD 265
           L      L+ +++S   ++        L KL              S L+ L++   Q+  
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA- 194

Query: 266 TGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLS 323
               +L T  + L  L  +  R+T      L      L+ L + G  LT          S
Sbjct: 195 ----SLPTLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNRLTSLP----VLPS 241

Query: 324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNL 374
            L  L +S N  LT     L    +GL+SL+V  +++T     L HL     +
Sbjct: 242 ELKELMVSGN-RLT----SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 60/322 (18%), Positives = 105/322 (32%), Gaps = 57/322 (17%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYL 136
           P     ++ +L I  + +T           +L  L + G  +T   L      L  L   
Sbjct: 56  PDCLPAHITTLVIPDNNLTS----LPALPPELRTLEVSGNQLT--SLPVLPPGLLELSIF 109

Query: 137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +     L             L  L +  N++T            L+ L++    +     
Sbjct: 110 SNPLTHLPAL-------PSGLCKLWIFGNQLTS----LPVLPPGLQELSVSDNQLASL-- 156

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISD-----GSLRKL--- 247
                   L  L   + Q     L  L    + L+ +++S   ++        L KL   
Sbjct: 157 --PALPSELCKLWAYNNQ-----LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAY 209

Query: 248 --------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 299
                   A  S LK L +   ++T          + L  L + G R+T           
Sbjct: 210 NNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS----LPMLPS 261

Query: 300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 359
            L SL +    LT    + +  LSS T +NL  N  L+++TL+ +  +T   S    +  
Sbjct: 262 GLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGN-PLSERTLQALREIT---SAPGYSGP 316

Query: 360 ITSAGLRHLKPLKNLRSLTLES 381
           I    +      +  R+L L +
Sbjct: 317 IIRFDMAGASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 9e-09
 Identities = 66/386 (17%), Positives = 123/386 (31%), Gaps = 75/386 (19%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 65
           +    L +L    N                L  L +              GL++L   + 
Sbjct: 78  ALPPELRTLEVSGN---------------QLTSLPVL-----------PPGLLELSIFSN 111

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 125
                +           + L  L I  +++T S      GLQ+L++ + +        L 
Sbjct: 112 PL-THLPAL-------PSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQ--------LA 154

Query: 126 SLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLES 183
           SL A    L  L     QL+            L+ L++  N++       L    + L  
Sbjct: 155 SLPALPSELCKLWAYNNQLTSLPML----PSGLQELSVSDNQLAS-----LPTLPSELYK 205

Query: 184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDG 242
           L   +  +    L  L     LK L +S  +     L  L    + L+ + +S   ++  
Sbjct: 206 LWAYNNRL--TSLPAL--PSGLKELIVSGNR-----LTSLPVLPSELKELMVSGNRLT-- 254

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 301
           SL  L   S L SL++   Q+T   L  +L  L+  T ++L G  +++      +  + +
Sbjct: 255 SLPML--PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTL---QALREI 307

Query: 302 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRI 360
            S     G +    +           L+L+    L        +            N+  
Sbjct: 308 TSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADA 367

Query: 361 TSAGLRHLKPLKNLRSLTLESCKVTA 386
            S  L  L   +N         ++++
Sbjct: 368 FSLFLDRLSETENFIKDAGFKAQISS 393

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 79  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 138
           L     L+ L+        + I  ++ L  L          T     +L A+  +    L
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-----TLQYFSTLKAVDPMRAAYL 422

Query: 139 NRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 196
           +  +          K+    ++VL+L   ++T   L HL+ L  +  L+L    +     
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALP 479

Query: 197 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKS 255
             L  L  L+ L+ SD  + +  +  ++ L  L+ + L    +    +++ L     L  
Sbjct: 480 PALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 256 LNLDARQITD 265
           LNL    +  
Sbjct: 538 LNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 47/262 (17%), Positives = 89/262 (33%), Gaps = 50/262 (19%)

Query: 148 CEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 205
           C   +    L    L   + T     L   K L  LE          +     LT +  +
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP---------ENKWCLLTIILLM 392

Query: 206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-----SLKSLNLDA 260
           + L+          L++ S L  ++ +  ++             +       ++ L+L  
Sbjct: 393 RALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 320
           + +T   L  L  L  +THLDL              +   LR+L              + 
Sbjct: 451 KDLTV--LCHLEQLLLVTHLDL--------------SHNRLRALP-----------PALA 483

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 379
            L  L +L  S N  L    ++ ++ L  L  L + N+R+   A ++ L     L  L L
Sbjct: 484 ALRCLEVLQASDN-ALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 380 ESCKVTANDIKRLQSRD-LPNL 400
           +   +   +  + +  + LP++
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 11/106 (10%)

Query: 18  RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 75
            +  +T   +     L+ +  LDL   R   +   L  L+    LE L     N + +  
Sbjct: 449 AHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALR---CLEVLQAS-DNALEN-- 500

Query: 76  MKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 120
           +  ++ L  L+ L +  +++   + I  L    +L LLNL+G  + 
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 62/369 (16%), Positives = 120/369 (32%), Gaps = 62/369 (16%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIK 66
             +L SL    N+       +    L +L+  +          L  L  L   LE L + 
Sbjct: 90  PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNN--------LKALSDLPPLLEYLGVS 139

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 126
             N +       L   + LK + +  + +             L  +      +    L  
Sbjct: 140 -NNQLEKLP--ELQNSSFLKIIDVDNNSLKK----LPDLPPSLEFIAAGNNQLEE--LPE 190

Query: 127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 186
           L  L  L  +  +   L     +      SL+ +  G N + +  L  L+ L  L ++  
Sbjct: 191 LQNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYA 244

Query: 187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSL 244
           D+  +  + L +L    +L+ L + D  + +        LT L+     F+G+S+   +L
Sbjct: 245 DNNLL--KTLPDL--PPSLEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNL 299

Query: 245 RKL-----------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
             L               SL+ LN+   ++ +           L  L      + +    
Sbjct: 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPE- 354

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
                +NL+ L +    L         D+   ++ +L  N +L     E+      L  L
Sbjct: 355 ---LPQNLKQLHVEYNPLR-----EFPDIPE-SVEDLRMNSHLA----EVPELPQNLKQL 401

Query: 354 NVSNSRITS 362
           +V  + +  
Sbjct: 402 HVETNPLRE 410

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 66/394 (16%), Positives = 126/394 (31%), Gaps = 69/394 (17%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           E L   SNLT +                  + +  +                    ++  
Sbjct: 15  EPLRHSSNLTEMP------------VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 63  LNIKWCNC-------ITDSDMKPL-SGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLN 113
             ++ C         + +  +  L     +L+SL  SC+ +T+  +    + L+ L + N
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE--LPELPQSLKSLLVDN 120

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
                ++            L YL ++  QL      +      LK++++  N +      
Sbjct: 121 NNLKALS-------DLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKL--- 168

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESI 232
                 +LE +   +  +  E L  L  L  L  +   +       L+ L     +LESI
Sbjct: 169 -PDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNS-----LKKLPDLPLSLESI 220

Query: 233 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 292
                 +    L +L  L  L ++  D   +             L  L++    +TD   
Sbjct: 221 VAGNNILE--ELPELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTD--- 271

Query: 293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLV 351
                 ++L  L+     +++     + +L  +L  LN S N  +      L      L 
Sbjct: 272 -LPELPQSLTFLD-----VSENIFSGLSELPPNLYYLNASSN-EIR----SLCDLPPSLE 320

Query: 352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
            LNVSN+++    L  L     L  L      + 
Sbjct: 321 ELNVSNNKLIE--LPAL--PPRLERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 45/288 (15%), Positives = 94/288 (32%), Gaps = 39/288 (13%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
            L  L  LT++    N+             ++L  +           L  L+ L  L ++
Sbjct: 190 ELQNLPFLTAIYADNNSLKKL-----PDLPLSLESIVAGNNILEE--LPELQNLPFLTTI 242

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
                N +            +L++L +  + +T       + L  L +       ++   
Sbjct: 243 YAD-NNLLKTLP----DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS--- 293

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLE 182
                   +L+YLN +  ++            SL+ LN+  N++       L      LE
Sbjct: 294 ----ELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-----ELPALPPRLE 340

Query: 183 SLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-----NLS 235
            L      + +  E   NL  L +++   L +       +  L   ++L  +     NL 
Sbjct: 341 RLIASFNHLAEVPELPQNLKQL-HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK 399

Query: 236 FTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
              +    LR+      S++ L +++ ++ D    A  +   L     
Sbjct: 400 QLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 176 KGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 234
           +  ++++ L LD+    +  L  LT     L+ L   +  + S  + +L  L  L+ + L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 235 SFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 284
           S   +S G         +L  LNL   +I D + +  L  L  L  LDLF 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 104 KGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 162
           +    +  L L+        L+ L      L +L+     L+        K+  LK L L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 163 GFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 212
             N ++    V  +   NL  LNL    I D   +  L  L NLK L+L +
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 8   LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 65
            S++  L    + +   +          L  L       T I     NL  L KL+ L +
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA----NLPKLNKLKKLEL 71

Query: 66  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 120
              N ++           NL  L +S +K+ D S I  LK L+ L  L+L  C VT
Sbjct: 72  S-DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 273 SLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 331
           + + +  L L  +R  +         F+ L  L     GLT   + ++  L+ L  L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELS 72

Query: 332 QNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVT 385
            N  ++     L      L  LN+S ++I   + +  LK L+NL+SL L +C+VT
Sbjct: 73  DN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 296 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 354
           R   +++ L +      +  ++ + D    L  L+   N  LT   +  +  L  L  L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTS--IANLPKLNKLKKLE 70

Query: 355 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 402
           +S++R++       +   NL  L L   K+   + I+ L  + L NL S
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL--KKLENLKS 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 8e-09
 Identities = 68/358 (18%), Positives = 111/358 (31%), Gaps = 83/358 (23%)

Query: 77  KPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSAL-GS 132
           +P   L   L  L+     V   G   + G  K  +           CL       +   
Sbjct: 135 QPYLKLRQALLELR-PAKNVLIDG---VLGSGKTWV-------ALDVCLSYKVQCKMDFK 183

Query: 133 LFYLNLNRC---------------QLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHL 175
           +F+LNL  C               Q+  +   +     ++K   L  + I  E   L+  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKS 240

Query: 176 KGLTN-LESLNLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQV----GSSGLRHLSGLT 227
           K   N L  L L    + +    N     NL C  L      QV     ++   H+S   
Sbjct: 241 KPYENCL--LVLL--NVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHIS--- 290

Query: 228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 287
            L+  +++ T   D     L      K L+   +      L      T    L +    I
Sbjct: 291 -LDHHSMTLT--PDEVKSLLL-----KYLDCRPQD-----LPREVLTTNPRRLSIIAESI 337

Query: 288 TDSGAAYLRNFKNL------RSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKT 340
            D G A   N+K++        +E     L  A  + +   LS         + ++    
Sbjct: 338 RD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTIL 391

Query: 341 LELI--SGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTANDIKRLQSR 395
           L LI    +   V + V+     S   +  K    ++ S+ LE  KV   +   L   
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLENEYALHRS 448

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 1   MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLM 58
           M   LS L     L+    N I    + + +G+ NL  L L R    +I           
Sbjct: 40  MDATLSTLKACKHLALS-TNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAVAD--- 93

Query: 59  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGC 117
            LE L I   N I  + +  +  L NL+ L +S +K+T+   I  L  L KL  L L G 
Sbjct: 94  TLEELWIS-YNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

Query: 118 PVT 120
           P+ 
Sbjct: 151 PLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 126 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESL 184
           +LS L +  +L L+   +        S + +L++L+LG N I    + +L  + + LE L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS 243
            +    I    L  +  L NL+ L +S+ ++ +   +  L+ L  LE + L+   + +  
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 244 LRKLAG-------LSSLKSLN-LDARQITD 265
               A        +  L +L  LD   +  
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLDGMPVDV 186

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 198 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSL 256
            L+ L   K L LS   +    +  LSG+ NL  ++L    I    +L  +    +L+ L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAV--ADTLEEL 98

Query: 257 NLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICG 308
            +   QI    L+ +  L  L  L +   +IT+      L     L  L + G
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 255 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTD 313
            L+     I     A L++L    HL L    I   S    L   +NLR L +    +  
Sbjct: 29  ELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSLGRNLIKK 84

Query: 314 AGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPL 371
             ++++  ++ +L  L +S N  +    L  I  L  L  L +SN++IT+   +  L  L
Sbjct: 85  --IENLDAVADTLEELWISYN-QIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 372 KNLRSLTLESCKVTANDIKRLQSRD 396
             L  L L    +  +  +   + +
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSE 164

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 251 SSLKSLNL-DARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNL 301
             L+ +NL +   I    L     AL + T +    + G R  D  A      L+    L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 302 RSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN-LTDKTLELISGL----TGLVS 352
           +SL +    ++ +G+  +    +  +SL  L +      L +     I+ +    T L+ 
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 353 LNVSNSRITSAG 364
                ++     
Sbjct: 156 FGYHFTQQGPRL 167

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 132 SLFYLNLNR-CQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVH----LKGLTNLE 182
            L  +NLN    +     +  ++       +K  ++      D         LK    L+
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96

Query: 183 SLNLDSCGIGDEGLVNL-------TGLCNLKCLELSDTQVGSSGLRHLSGL----TNLES 231
           SLN++S  I   G++ L       T L  L+ ++     +G++    ++ +    T L  
Sbjct: 97  SLNVESNFISGSGILALVEALQSNTSLIELR-IDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 232 INLSFTGISD 241
               FT    
Sbjct: 156 FGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 175 LKGLTNLESLNL-DSCGIGDEGLVNL-TGLCN---LKCLELSDTQVGSSGLRHLSGL--- 226
                +LE +NL +   I    L      L     +K   +  T+        L+ +   
Sbjct: 32  QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV 91

Query: 227 -TNLESINLSFTGISDGSLRKLA-GL---SSLKSLNLDAR--QITDTGLAALTSL----T 275
              L+S+N+    IS   +  L   L   +SL  L +D +   + +     + ++    T
Sbjct: 92  NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT 151

Query: 276 GLTHLDLFGARITDSGAA 293
            L        +      A
Sbjct: 152 TLLKFGYHFTQQGPRLRA 169

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL----SSLKSLNLDARQ 262
            E + T V  +  R  +   +LE +NL+    I   +L+  A      + +K  ++   +
Sbjct: 17  EEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76

Query: 263 ITDTG---LA-ALTSLTGLTHLDLFGARITDSGAAYLRNF----KNLRSLEI--CGGGLT 312
             D     LA  L     L  L++    I+ SG   L        +L  L I      L 
Sbjct: 77  SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136

Query: 313 DAGVKHIKDL----SSLTLLNLSQNC 334
           +     I ++    ++L         
Sbjct: 137 NNVEMEIANMLEKNTTLLKFGYHFTQ 162

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 47/170 (27%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            +L  ++      I    +KA A                      LK    ++  +I   
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEA--------------------LKTNTYVKKFSIVG- 74

Query: 69  NCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
               D     L+ +      LKSL +  + ++ SGI  L                    L
Sbjct: 75  TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL-----------------VEAL 117

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE 170
            S ++L  L  ++     L ++   + + +     +L      F +    
Sbjct: 118 QSNTSLIEL-RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 178 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 236
              +  L LD+C   D  +  LT    NL+ L L +  + S  + +L  L  L+ + LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 237 TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD 289
             I  G       L +L  LNL   ++ D   L  L  L  L  LDLF   +T+
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 82  LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 140
              ++ L +   K  D  I  L      L  L+L    +    + +L  L  L  L L+ 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSE 80

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 191
            ++         K+ +L  LNL  N++ D   L  LK L  L+SL+L +C +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 106 LQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
              +  L L+ C      ++ L +   +L +L+L    L         K+  LK L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 165 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 212
           N I     +  + L NL  LNL    + D   L  L  L  LK L+L +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 308
           G S    +++  R   +       ++  L  LD   +            F NL  L +  
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVRELV-LDNCKSNDG-KIEGLTAEFVNLEFLSLIN 58

Query: 309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRH 367
            GL    V ++  L  L  L LS+N  +      L   L  L  LN+S +++   + L  
Sbjct: 59  VGLIS--VSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 368 LKPLKNLRSLTLESCKVT 385
           LK L+ L+SL L +C+VT
Sbjct: 116 LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 63
             + +  L  L   ++N    +G+   A  +NL  L L     +   + NL  L KL+ L
Sbjct: 22  TPAAVRELV-LDNCKSNDGKIEGL--TAEFVNLEFLSLINV-GLIS-VSNLPKLPKLKKL 76

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 120
            +   N I          L NL  L +S +K+ D S +  LK L+ L  L+L  C VT
Sbjct: 77  ELS-ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 136 LNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
           L L+ C+ +D   E   ++  +L+ L+L    +    + +L  L  L+ L L    I   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGG 86

Query: 195 GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
             +    L NL  L LS  ++   S L  L  L  L+S++L    +++ +  + +    L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 254 KSLN-LDARQITD 265
             L  LD     D
Sbjct: 147 PQLTYLDGYDRED 159

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 28/155 (18%)

Query: 156 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD------EGLVNLT-------- 200
              +L+L  N ++          LTNL SL L    +          + NL         
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 201 ----------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKL 247
                      L  L+ L L +  +          +  L+ + LS    +      ++  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
             L  L  L+L + ++    L  L  L       L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 8/163 (4%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 66
           S    L    NN    +       L NL  L L       I         +  L  L++ 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96

Query: 67  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AAC 123
             N +   D    S L  L+ L +  + +        + + +L  L L    ++      
Sbjct: 97  S-NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 124 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 166
           +   + L  L  L+L+  +L         K+ +     L  + 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLES 62
            + L+NL SL    +N +     +AF  + NL  LDL       +   L     L  LE 
Sbjct: 60  PTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL--FSDLQALEV 116

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCPV 119
           L + + N I   D      +  L+ L +S ++++      I     L KL LL+L    +
Sbjct: 117 LLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 120 TAACLDSLSALGSLFYLNLN 139
               L  L  L +     L 
Sbjct: 176 KKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 251 SSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEIC 307
           S    L+L    ++        T LT L  L L    +    S A       NLR L++ 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96

Query: 308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---AG 364
              L         DL +L +L L  N ++          +  L  L +S ++I+      
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 365 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 406
           ++    L  L  L L S     N +K+L   DL  L ++   
Sbjct: 156 IKDGNKLPKLMLLDLSS-----NKLKKLPLTDLQKLPAWVKN 192

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 46/282 (16%), Positives = 89/282 (31%), Gaps = 27/282 (9%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMK 59
           E   G  +L  L  R +              ++L +L +       RI  G + + G+  
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG------LQKLTLLN 113
           L+ L ++    +T +   PL   T      ++   V+ +                L +L+
Sbjct: 97  LQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-------EKFSKIGSLKVLNLGFNE 166
           +          + +    +L  L+L+      +          KF  +  L + N G   
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 167 ITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 225
            +  C         L+ L+L    +    G  +      L  L LS T      L+ +  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-----LKQVPK 270

Query: 226 --LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
                L  ++LS+  +          L  + +L+L      D
Sbjct: 271 GLPAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 45/249 (18%), Positives = 77/249 (30%), Gaps = 27/249 (10%)

Query: 132 SLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLT--NLESLNL 186
           SL  L +   ++         ++     L+ L L   E+T      L   T  +L  LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 187 DSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 242
            +            +       LK L ++     +     +     L +++LS       
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 243 S-------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 294
                     K   L  L   N      +    A   +   L  LDL    + D+ GA  
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 295 LRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISGLTGLVS 352
                 L SL +   GL       +     + L++L+LS N  L          L  + +
Sbjct: 249 CDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSVLDLSYN-RLD--RNPSPDELPQVGN 300

Query: 353 LNVSNSRIT 361
           L++  +   
Sbjct: 301 LSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 39/222 (17%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 207
             K  SLK L +    I    L       G++ L+ L L++  +       L        
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
             L+        LR++S  T    +      +             LK L++      +  
Sbjct: 124 NILN--------LRNVSWATRDAWLAELQQWL----------KPGLKVLSIAQAHSLNFS 165

Query: 268 LAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIK 320
              +     L+ LDL             A     F  L+ L +   G+            
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 362
               L  L+LS N              + L SLN+S + +  
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 13/180 (7%)

Query: 210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
            +D    +  ++ LS L  L                ++ G+S L+ L L+  ++T T   
Sbjct: 55  EADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 270 ALTSLTG--LTHLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHIKDLS 323
            L   TG  L  L+L         A            L+ L I      +   + ++   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 324 SLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSL 377
           +L+ L+LS N  L ++ L           L  L + N+ + +              L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L+L+   L             L  LNL   E+T   L     L  L +L+L    +   
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQSL 92

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS 251
            L+    L  L  L++S  ++ S  L  L GL  L+ + L       +  G L       
Sbjct: 93  PLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP---TP 148

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            L+ L+L    +T+     L  L  L  L L
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 238
            +   L+L    +    L  L     L  L L   ++    L+    L  L +++LS   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 239 ISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 297
           +   SL      L +L  L++   ++T   L AL  L  L  L L G  +       L  
Sbjct: 89  LQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 298 FKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 333
              L  L +    LT+  AG+  +  L +L  L L +N
Sbjct: 147 TPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +   ++LS   +   SL  L   + L  LNLD  ++T   L    +L  L  LDL   +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
           +  S     +    L  L++    LT    G   ++ L  L  L L  N  L      L+
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGN-ELKTLPPGLL 144

Query: 345 SGLTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 398
           +    L  L+++N+ +T        GL +L  L  L+  +L +          L    L 
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 399 N 399
            
Sbjct: 204 G 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 29/180 (16%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            + T L    N  +    +        L +L+L+R               +L  L +   
Sbjct: 31  KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA--------------ELTKLQVDG- 74

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
                        L  L +L +S +++  S     + L  LT+L++    +T+  L +L 
Sbjct: 75  ------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            LG L  L L   +L        +    L+ L+L  N +T+     L GL NL++L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 194
            L+L   +LS    + F ++  L++L L  N++        K L NLE+L +    +   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 195 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS 251
            +     L NL  L L   Q+ S   R    LT L  ++L       +  G   KL   +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL---T 157

Query: 252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 304
           SLK L L   Q+      A   LT L  L L   ++         + + L+ L
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 41/185 (22%), Positives = 59/185 (31%), Gaps = 34/185 (18%)

Query: 105 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 164
            L KL LL L    +          L +L  L +   +L       F ++ +L  L L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 165 NEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           N++       L       LT L  L+L            L  L                G
Sbjct: 119 NQLK-----SLPPRVFDSLTKLTYLSLGYN--------ELQSL--------------PKG 151

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           +     LT+L+ + L    +          L+ LK+L LD  Q+      A  SL  L  
Sbjct: 152 V--FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 280 LDLFG 284
           L L  
Sbjct: 210 LQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 35/206 (16%)

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESIN 233
            + + L+L S  +          L  L+ L L+D +     L+ L       L NLE++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLW 91

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           ++   +    +     L +L  L LD  Q+         SLT LT+L L    +      
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ----- 146

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
                    SL          GV     L+SL  L L  N  L          LT L +L
Sbjct: 147 ---------SLP--------KGV--FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186

Query: 354 NVSNSRITSAGLRHLKPLKNLRSLTL 379
            + N+++          L+ L+ L L
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            + + ++L    +S    +    L+ L+ L L+  ++          L  L  L +   +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 344
           +            NL  L +    L      V     L+ LT L+L  N  L      + 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYN-ELQSLPKGVF 153

Query: 345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
             LT L  L + N+++          L  L++L L++     N +KR+      +L  
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-----NQLKRVPEGAFDSLEK 206

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 19  NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 76
           +N +++   KAF  L  L  L L       +  G+     L  LE+L +   N +    +
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTD-NKLQALPI 102

Query: 77  KPLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 134
                L NL  L++  +++      +     L KLT L+L    + +        L SL 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160

Query: 135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            L L   QL       F K+  LK L L  N++          L  L+ L L  
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 32/246 (13%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGD 193
            N     +S    + FS     +   L   E  +E +  LK   +     L L+   +  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSS 252
              +       +  LE++        L  L     +LE ++     +S  +L +L   +S
Sbjct: 74  ---LPDNLPPQITVLEITQNA-----LISLPELPASLEYLDACDNRLS--TLPEL--PAS 121

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           LK L++D  Q+T            L +++    ++T           +L  L +    LT
Sbjct: 122 LKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT 173

Query: 313 DAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHL 368
                  +   SL  L++S N   +L    +         +      +RIT     +  L
Sbjct: 174 FL----PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 369 KPLKNL 374
            P   +
Sbjct: 230 DPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 52/292 (17%)

Query: 4   NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 62
           N   LS  +       N I+      F+      K  L    R     L+    + +   
Sbjct: 9   NNFSLSQNSF-----YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCPV 119
           L +     ++     P +    +  L+I+ + +    +        L+ L   +      
Sbjct: 64  LQLN-RLNLSSL---PDNLPPQITVLEITQNALISLPEL----PASLEYLDACDNR---- 111

Query: 120 TAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 178
               L +L     SL +L+++  QL+            L+ +N   N++T   L  L   
Sbjct: 112 ----LSTLPELPASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLT--MLPEL--P 159

Query: 179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 234
           T+LE L++ +  +    L  L    +L+ L++S        L  L        + E   +
Sbjct: 160 TSLEVLSVRNNQLTF--LPEL--PESLEALDVSTNL-----LESLPAVPVRNHHSEETEI 210

Query: 235 SFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
            F    +  +  +      L    ++ L+   ++     +L+  T       
Sbjct: 211 FF-RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 41/235 (17%), Positives = 82/235 (34%), Gaps = 45/235 (19%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELS 211
           S + L L    +          L N+  + +        +      NL+    +  +E+ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS---KVTHIEIR 88

Query: 212 DTQVGSSGLRHLS-----GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQIT 264
           +T+     L ++       L  L+ + +  TG+     L K+        L + D   +T
Sbjct: 89  NTR----NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 265 DTGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 323
              + A   L   T  L L+    T              S++            +  + +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT--------------SVQ-----------GYAFNGT 179

Query: 324 SLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 377
            L  + L++N  LT    +   G+ +G   L+VS + +T+   + L+ LK L + 
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 23/212 (10%)

Query: 6   SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLES 62
           S   +  +L     + +      AF+ L N+ ++ +       ++         L K+  
Sbjct: 28  SLPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS--FYNLSKVTH 84

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCP--- 118
           + I+    +T  D   L  L  LK L I  + +     +  +       +L +   P   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 119 -VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN----EITDECLV 173
            +       L        L L     +      F+    L  + L  N     I  +   
Sbjct: 145 SIPVNAFQGLCNE--TLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFG 201

Query: 174 HLKGLTNLESLNLDSCGIG---DEGLVNLTGL 202
            +   +    L++    +     +GL +L  L
Sbjct: 202 GVY--SGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 10/189 (5%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLE 61
            S L N++ +    +  +      +F  L  +  +++      T I      LK L  L+
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--LKELPLLK 108

Query: 62  SLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTL-LNLEGCPV 119
            L I         D+  +        L+I+    +T   +   +GL   TL L L     
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

Query: 120 TAACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKIGS-LKVLNLGFNEITDECLVHLKG 177
           T+    + +    L  + LN+ +      +  F  + S   +L++    +T      L+ 
Sbjct: 169 TSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

Query: 178 LTNLESLNL 186
           L  L + N 
Sbjct: 228 LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 263 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 320
           +T   +  + SL      L L    +    +    N  N+  + +     L         
Sbjct: 18  VTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 321 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 379
           +LS +T + +    NLT    + +  L  L  L + N+ +     L  +        L +
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 380 ESCKVTANDIKRLQSRDLPNLVS 402
                    +  +       L +
Sbjct: 138 TD----NPYMTSIPVNAFQGLCN 156

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 156 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSD 212
               L L  NE T  E     K L  L  +N  +  I D  EG     G   +  + L+ 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--FEGASGVNEILLTS 90

Query: 213 TQVGSSGLRHLSGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 269
            ++ +   +   GL +L+++ L     T + + S      LSS++ L+L   QIT     
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPG 147

Query: 270 ALTSLTGLTHLDLFG 284
           A  +L  L+ L+L  
Sbjct: 148 AFDTLHSLSTLNLLA 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS------- 188
           L+L    L+      F  +  L  LNL +N++          LT L +L L +       
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLR 245
            G+ D        L  L  L L   Q+ S        LT L+ + L+      I  G+  
Sbjct: 100 LGVFD-------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           KL   ++L++L+L   Q+      A   L  L  + LFG
Sbjct: 153 KL---TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 49/247 (19%)

Query: 148 CEKFSKIGSLKVLNLGFNEITDECLV--HLKGLTNLESLNLDSCGIGDEGLVNLTG---- 201
           C+  ++   +  L+L    +     +   L  L  L  L +        G+ NL G    
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-------GGINNLVGPIPP 95

Query: 202 ----LCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLK 254
               L  L  L ++ T V  SG     LS +  L +++ S+  +S G+L   ++ L +L 
Sbjct: 96  AIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLV 152

Query: 255 SLNLDARQITDT---GLAALTSL-----------TG----------LTHLDLFGARITDS 290
            +  D  +I+        + + L           TG          L  +DL    +   
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 350
            +    + KN + + +    L    +  +    +L  L+L  N  +     + ++ L  L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFL 270

Query: 351 VSLNVSN 357
            SLNVS 
Sbjct: 271 HSLNVSF 277

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLD 259
            L+C            L HL G  NL  + +        +    LR   GL  L++L + 
Sbjct: 12  GLRCTRDGALDS----LHHLPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIV 64

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARIT 288
              +      A      L+ L+L    + 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 19/94 (20%), Positives = 31/94 (32%)

Query: 307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 366
           C        + H+    +LT L +    +L    L  + GL  L +L +  S +      
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 367 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 400
                  L  L L    + +   K +Q   L  L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 267
           + L    +        S    L  I+LS   IS+ +     GL SL SL L   +IT+  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 327
            +    L  L  L L   +I        ++  NL  L +    L          L ++  
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 328 LNLSQN-----CNL 336
           ++L+QN     C+L
Sbjct: 157 MHLAQNPFICDCHL 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 25/155 (16%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
             +  I L    I        +    L+ ++L   QI++    A   L  L  L L+G  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-- 89

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
                     N   +  L           +   + L SL LL L+ N  +    ++    
Sbjct: 90  ----------N--KITEL--------PKSL--FEGLFSLQLLLLNAN-KINCLRVDAFQD 126

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 381
           L  L  L++ ++++ +       PL+ ++++ L  
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.33
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.42

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.1e-42  Score=325.12  Aligned_cols=381  Identities=23%  Similarity=0.250  Sum_probs=228.3

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG   81 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   81 (406)
                      |..|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +....+..+..
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~  127 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHN  127 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTT
T ss_pred             hhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhcc
Confidence            5567888888888888886 455566778888888888888887555555667778888888888754 44444555677


Q ss_pred             CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCc--EEEcCCccCChhh------------
Q 015457           82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF--YLNLNRCQLSDDG------------  147 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~------------  147 (406)
                      +++|++|++++|.+.......+..+++|++|++++|.+....+..++.+++|+  .+++++|.+....            
T Consensus       128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L  207 (606)
T 3t6q_A          128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL  207 (606)
T ss_dssp             CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred             CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccc
Confidence            77777777777776654434444577777777777777766666666666666  5666655443322            


Q ss_pred             ---------------------------------------------------------------hhhccCCCCccEEEecC
Q 015457          148 ---------------------------------------------------------------CEKFSKIGSLKVLNLGF  164 (406)
Q Consensus       148 ---------------------------------------------------------------~~~~~~l~~L~~L~l~~  164 (406)
                                                                                     +..+..+++|+.|++++
T Consensus       208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  287 (606)
T 3t6q_A          208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA  287 (606)
T ss_dssp             ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred             ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence                                                                           22244556677777777


Q ss_pred             CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc-hhHHhhcCCCCCcEEeccCCCCChhH
Q 015457          165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS  243 (406)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~  243 (406)
                      |.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.. .....+..+++|+.|++++|.++...
T Consensus       288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            7665 455556666777777777776665555556666666666666665442 22233455666666666666555433


Q ss_pred             --HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH-HHhhcCCCCCEEEccCCCCChHHHHhhh
Q 015457          244 --LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIK  320 (406)
Q Consensus       244 --~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~  320 (406)
                        +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.
T Consensus       367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence              3345556666666666665555444445555556666665555543322 2244555555555555555544444455


Q ss_pred             cCCCCCEEeccCCCCCChh---HHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          321 DLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       321 ~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      .+++|+.|++++| .+...   .+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus       447 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          447 GLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             TCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            5555555555555 33321   11234445555555555555555444445555555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.1e-42  Score=334.50  Aligned_cols=393  Identities=20%  Similarity=0.171  Sum_probs=267.3

Q ss_pred             ccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC-CC
Q 015457            5 LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LT   83 (406)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~   83 (406)
                      +.++++|++|++++|. +.+..+..+..+++|++|++++|......+..  .+++|++|++++|. +.+..+..+.. ++
T Consensus       219 l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~  294 (768)
T 3rgz_A          219 LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACD  294 (768)
T ss_dssp             CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE-EEESCCCCSCTTCT
T ss_pred             cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCc-cCCccCHHHHhhcC
Confidence            7778888888888886 45555677888888888888887643322221  56666666666643 22222333332 36


Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHH-HhcCCCCcEEEcCCccCChhhhhhcc----------
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFS----------  152 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~----------  152 (406)
                      +|++|++++|.+.+..+..+.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+.          
T Consensus       295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~  374 (768)
T 3rgz_A          295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD  374 (768)
T ss_dssp             TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred             cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence            6666666666665555555666666666666666655333333 55666666666666655433333322          


Q ss_pred             ---------------C--CCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcC
Q 015457          153 ---------------K--IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV  215 (406)
Q Consensus       153 ---------------~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  215 (406)
                                     .  +++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus       375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l  454 (768)
T 3rgz_A          375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML  454 (768)
T ss_dssp             CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence                           2  45566666666666656666677777777777777766655666677777788888877777


Q ss_pred             CchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHh
Q 015457          216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL  295 (406)
Q Consensus       216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  295 (406)
                      ....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus       455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  534 (768)
T 3rgz_A          455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL  534 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred             cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence            66666667777888888888887776666667777888888888887776556667777888888888888776667777


Q ss_pred             hcCCCCCEEEccCCCCChHHHHh---------------------------------------------------------
Q 015457          296 RNFKNLRSLEICGGGLTDAGVKH---------------------------------------------------------  318 (406)
Q Consensus       296 ~~~~~L~~L~l~~~~~~~~~~~~---------------------------------------------------------  318 (406)
                      ..+++|+.|++++|.+.+..+..                                                         
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            77888888888877655332221                                                         


Q ss_pred             -------------hhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCC
Q 015457          319 -------------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  385 (406)
Q Consensus       319 -------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~  385 (406)
                                   +..+++|+.|++++| .+....+..++.+++|+.|++++|.+++..+..+.++++|+.|++++|+++
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             cccceecccCchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence                         222467788888888 777777778888888999999999988888888888889999999999887


Q ss_pred             hhhHHHHhhcCCCCccccC
Q 015457          386 ANDIKRLQSRDLPNLVSFR  404 (406)
Q Consensus       386 ~~~~~~~~~~~~~~l~~l~  404 (406)
                      ......+  ..++.|+.|.
T Consensus       694 g~ip~~l--~~l~~L~~L~  710 (768)
T 3rgz_A          694 GRIPQAM--SALTMLTEID  710 (768)
T ss_dssp             ECCCGGG--GGCCCCSEEE
T ss_pred             CcCChHH--hCCCCCCEEE
Confidence            6444444  3556666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.3e-41  Score=320.54  Aligned_cols=380  Identities=21%  Similarity=0.256  Sum_probs=275.7

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG   81 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   81 (406)
                      |..|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +.......+..
T Consensus        74 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  151 (606)
T 3t6q_A           74 EDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFP  151 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCC
T ss_pred             hhhccCccccCeeeCCCCc-ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccC
Confidence            6678999999999999987 455566778899999999999988555445678889999999999865 44433344445


Q ss_pred             CCCccEEEeccCccChhHHHhhhcCCCCC--EEEecCCCCChhh------------------------------------
Q 015457           82 LTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGCPVTAAC------------------------------------  123 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~------------------------------------  123 (406)
                      +++|++|++++|.+....+..+..+++|+  .|++++|.+....                                    
T Consensus       152 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~  231 (606)
T 3t6q_A          152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW  231 (606)
T ss_dssp             CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEE
T ss_pred             CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhhee
Confidence            88999999998888877677777777777  6666666544322                                    


Q ss_pred             ---------------------------------------HHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457          124 ---------------------------------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  164 (406)
Q Consensus       124 ---------------------------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (406)
                                                             +..+..+++|++|++++|.+. ..+..+..+++|++|++++
T Consensus       232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~  310 (606)
T 3t6q_A          232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA  310 (606)
T ss_dssp             CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTT
T ss_pred             chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECcc
Confidence                                                   223556788999999998887 4566778889999999999


Q ss_pred             CccchhHHhhhcCCCCCCeEEccCCCCCh-hhhHhhhCCCCCCEEEcCCCcCCchh--HHhhcCCCCCcEEeccCCCCCh
Q 015457          165 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISD  241 (406)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~  241 (406)
                      |.+....+..+..+++|+.|++++|.+.. .....+..+++|+.|+++++.+....  ...+..+++|+.|++++|.+..
T Consensus       311 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred             CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence            98887777778888889999988887653 33344677888888888888776654  4556777888888888887766


Q ss_pred             hHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH---HH
Q 015457          242 GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VK  317 (406)
Q Consensus       242 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~  317 (406)
                      ..+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..   +.
T Consensus       391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  470 (606)
T 3t6q_A          391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN  470 (606)
T ss_dssp             ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred             CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence            656666677777777777777665422 23556677777777777776655666666777777777777765521   13


Q ss_pred             hhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          318 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      .+..+++|+.|++++| .+....+..+..+++|+.|++++|++++..+..+..+++| .+++++|+++.
T Consensus       471 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          471 SLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             GGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             hhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            4566677777777777 5666556666677777777777777776666666667777 77777776664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.5e-42  Score=335.13  Aligned_cols=380  Identities=21%  Similarity=0.172  Sum_probs=299.2

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccC-CCCccEEeecCCCCcCcCcccccc
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLS   80 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~   80 (406)
                      |..+.++++|++|++++|... +..+..  .+++|++|++++|......+..+.. +++|++|++++|. +....+..+.
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~-~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~  315 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFV-GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFG  315 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCE-ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGG
T ss_pred             cHHHhcCCCCCEEECCCCccc-CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHh
Confidence            556788888888888888642 222211  6677777777777644344444444 3677777777643 3334455566


Q ss_pred             CCCCccEEEeccCccChhHH-HhhhcCCCCCEEEecCCCCChhhHHHHhc---------------------------CCC
Q 015457           81 GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSA---------------------------LGS  132 (406)
Q Consensus        81 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------l~~  132 (406)
                      .+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..|..+..                           +++
T Consensus       316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  395 (768)
T 3rgz_A          316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT  395 (768)
T ss_dssp             GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred             cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence            66677777776666553222 33566666666666666554333333322                           456


Q ss_pred             CcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCC
Q 015457          133 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD  212 (406)
Q Consensus       133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  212 (406)
                      |++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus       396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence            77777777776666777888999999999999999888888899999999999999999877788888999999999999


Q ss_pred             CcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH
Q 015457          213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  292 (406)
Q Consensus       213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (406)
                      |.+....+..+..+++|+.|++++|.++...+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|
T Consensus       476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            99987777888999999999999999988788888999999999999999987767788899999999999997764322


Q ss_pred             HH----------------------------------------------------------------------hhcCCCCC
Q 015457          293 AY----------------------------------------------------------------------LRNFKNLR  302 (406)
Q Consensus       293 ~~----------------------------------------------------------------------~~~~~~L~  302 (406)
                      ..                                                                      +..+++|+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            22                                                                      22357899


Q ss_pred             EEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457          303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  382 (406)
Q Consensus       303 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~  382 (406)
                      .|++++|.+++..+..++.++.|+.|++++| .+....+..++.+++|+.|++++|++++..+..+..+++|+++++++|
T Consensus       636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             EEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             EEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            9999999999988999999999999999999 888888899999999999999999999988999999999999999999


Q ss_pred             CCCh
Q 015457          383 KVTA  386 (406)
Q Consensus       383 ~~~~  386 (406)
                      +++.
T Consensus       715 ~l~g  718 (768)
T 3rgz_A          715 NLSG  718 (768)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-40  Score=313.13  Aligned_cols=377  Identities=22%  Similarity=0.233  Sum_probs=174.5

Q ss_pred             cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457            4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT   83 (406)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   83 (406)
                      .|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +.......++.++
T Consensus        51 ~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~  128 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLI  128 (606)
T ss_dssp             TTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCT
T ss_pred             hccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCC
Confidence            34555555555555554 333334445555555555555554333334445555555555555532 2223333455555


Q ss_pred             CccEEEeccCccCh-hHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCC----CcEEEcCCccCChhhhhhccCCCCcc
Q 015457           84 NLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEKFSKIGSLK  158 (406)
Q Consensus        84 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~l~~L~  158 (406)
                      +|++|++++|.+.. ..+..+.++++|++|++++|.+....+..++.+.+    +.++++++|.+....+..+.. .+|+
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~  207 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLH  207 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEE
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceee
Confidence            55555555555443 12344555555555555555555443333333322    235555555554433333333 2677


Q ss_pred             EEEecCCccch-hHHhh---------------------------------------------------------------
Q 015457          159 VLNLGFNEITD-ECLVH---------------------------------------------------------------  174 (406)
Q Consensus       159 ~L~l~~~~~~~-~~~~~---------------------------------------------------------------  174 (406)
                      .|++++|.+.+ ..+..                                                               
T Consensus       208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L  287 (606)
T 3vq2_A          208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV  287 (606)
T ss_dssp             EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred             eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence            77777765431 11111                                                               


Q ss_pred             ---------------hcCCCCCCeEEccCCCCChhh-------------------hHhhhCCCCCCEEEcCCCcCCchh-
Q 015457          175 ---------------LKGLTNLESLNLDSCGIGDEG-------------------LVNLTGLCNLKCLELSDTQVGSSG-  219 (406)
Q Consensus       175 ---------------~~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~~~~L~~l~l~~~~~~~~~-  219 (406)
                                     +..+++|+.|++.+|.+....                   ...+..+++|+.++++++.+.... 
T Consensus       288 ~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  367 (606)
T 3vq2_A          288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC  367 (606)
T ss_dssp             SEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred             CEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcc
Confidence                           112223344444443331111                   001122333444444443332221 


Q ss_pred             -HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHhhc
Q 015457          220 -LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN  297 (406)
Q Consensus       220 -~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  297 (406)
                       +..+..+++|+.|++++|.++... ..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.++...+..+..
T Consensus       368 ~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  446 (606)
T 3vq2_A          368 CSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG  446 (606)
T ss_dssp             CCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             hhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC
Confidence             233334444444444444333211 223344445555555444443322 23444555555555555554444444455


Q ss_pred             CCCCCEEEccCCCCChH-HHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccE
Q 015457          298 FKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS  376 (406)
Q Consensus       298 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  376 (406)
                      +++|++|++++|.+.+. .+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++..+..+..+++|++
T Consensus       447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence            55555555555555442 2334445555555555555 444444444555555555555555555544555555555555


Q ss_pred             EEccCCCCC
Q 015457          377 LTLESCKVT  385 (406)
Q Consensus       377 l~l~~~~~~  385 (406)
                      |++++|+++
T Consensus       526 L~l~~N~l~  534 (606)
T 3vq2_A          526 LDCSFNRIE  534 (606)
T ss_dssp             EECTTSCCC
T ss_pred             EECCCCcCc
Confidence            555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.1e-39  Score=307.78  Aligned_cols=352  Identities=19%  Similarity=0.195  Sum_probs=288.8

Q ss_pred             HHHHhcCCCCcEeeccCcccccC-----------------cccccc--CCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457           27 MKAFAGLINLVKLDLERCTRIHG-----------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS   87 (406)
Q Consensus        27 ~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   87 (406)
                      |..+.++++|++|++++|.....                 .+..+.  ++++|++|++++|.. ....+..+.++++|++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQL  277 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCCE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCCE
Confidence            45688999999999999884332                 677778  999999999999754 4455678899999999


Q ss_pred             EEeccCc-cCh-hHHHhhhcC------CCCCEEEecCCCCChhhHH--HHhcCCCCcEEEcCCccCChhhhhhccCCCCc
Q 015457           88 LQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL  157 (406)
Q Consensus        88 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  157 (406)
                      |++++|. +++ ..+..+..+      ++|++|++++|.+.. .|.  .+..+++|++|++++|.+.+..+ .+..+++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence            9999998 887 667777665      999999999999984 566  89999999999999999886666 78888999


Q ss_pred             cEEEecCCccchhHHhhhcCCCC-CCeEEccCCCCChhhhHhhhCC--CCCCEEEcCCCcCCchhHHhhc-------CCC
Q 015457          158 KVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLT  227 (406)
Q Consensus       158 ~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~l~-------~~~  227 (406)
                      +.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+...  ++|+.|++++|.+....+..+.       .++
T Consensus       356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            99999999988 77777888999 999999999887 444445443  4899999999998876666666       678


Q ss_pred             CCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcC-------CCCCEEEccCCCCChhHHHHhh--cC
Q 015457          228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NF  298 (406)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~  298 (406)
                      +|+.|++++|.++......+..+++|+.|++++|.++..+...+...       ++|+.|++++|.++.. +..+.  .+
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l  512 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTL  512 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTC
T ss_pred             CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccC
Confidence            99999999999987666667779999999999999986543333332       2899999999999854 45554  89


Q ss_pred             CCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCC-----CCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCC
Q 015457          299 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN  373 (406)
Q Consensus       299 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  373 (406)
                      ++|++|++++|.+++ .+..+..+++|+.|++++|.     .+....+..+..+++|+.|++++|.++.. +..+.  ++
T Consensus       513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~  588 (636)
T 4eco_A          513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PN  588 (636)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TT
T ss_pred             CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--Cc
Confidence            999999999999998 47778889999999995431     45666677888999999999999999653 33333  79


Q ss_pred             ccEEEccCCCCChhh
Q 015457          374 LRSLTLESCKVTAND  388 (406)
Q Consensus       374 L~~l~l~~~~~~~~~  388 (406)
                      |+.|++++|++....
T Consensus       589 L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          589 ISVLDIKDNPNISID  603 (636)
T ss_dssp             CCEEECCSCTTCEEE
T ss_pred             CCEEECcCCCCcccc
Confidence            999999999877643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-39  Score=308.78  Aligned_cols=379  Identities=21%  Similarity=0.185  Sum_probs=300.1

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG   81 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   81 (406)
                      |..|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|.......+..+.+
T Consensus        73 ~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~  151 (606)
T 3vq2_A           73 DKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN  151 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred             HHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh
Confidence            5678999999999999997 566667889999999999999998655555679999999999999976443345678899


Q ss_pred             CCCccEEEeccCccChhHHHhhhcCCC----CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChh-hh--------
Q 015457           82 LTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GC--------  148 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~--------  148 (406)
                      +++|++|++++|.+....+..+..+++    +.+++++++.+....+..+.. .+|+++++++|.+... .+        
T Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~  230 (606)
T 3vq2_A          152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAG  230 (606)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred             cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccc
Confidence            999999999999988766655555444    458999999998875555443 3788888877754310 00        


Q ss_pred             ----------------------------------------------------------------------hhccCCCCcc
Q 015457          149 ----------------------------------------------------------------------EKFSKIGSLK  158 (406)
Q Consensus       149 ----------------------------------------------------------------------~~~~~l~~L~  158 (406)
                                                                                            ..+..+++|+
T Consensus       231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~  310 (606)
T 3vq2_A          231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ  310 (606)
T ss_dssp             CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCS
T ss_pred             cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCC
Confidence                                                                                  0122334555


Q ss_pred             EEEecCCccchhHHh--------------------hhcCCCCCCeEEccCCCCChhh--hHhhhCCCCCCEEEcCCCcCC
Q 015457          159 VLNLGFNEITDECLV--------------------HLKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       159 ~L~l~~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      .|++++|.+. .+|.                    .+..+++|++|++++|.+....  +..+..+++|+.|+++++.+.
T Consensus       311 ~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  389 (606)
T 3vq2_A          311 SLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI  389 (606)
T ss_dssp             EEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred             EEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence            5555555542 2221                    2345677788888877765442  567788999999999999876


Q ss_pred             chhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChh-HHHH
Q 015457          217 SSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY  294 (406)
Q Consensus       217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~  294 (406)
                      ... ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++. .+..
T Consensus       390 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  468 (606)
T 3vq2_A          390 IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV  468 (606)
T ss_dssp             EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence            643 667889999999999998876555 5677899999999999999887667788999999999999998863 5667


Q ss_pred             hhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCC-C
Q 015457          295 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-N  373 (406)
Q Consensus       295 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~  373 (406)
                      +..+++|++|++++|.+++..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|+++.... .+..++ +
T Consensus       469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~-~~~~l~~~  546 (606)
T 3vq2_A          469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKS  546 (606)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEES-CGGGSCTT
T ss_pred             hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCH-hHhhhccc
Confidence            888999999999999999987888999999999999999 7888878889999999999999999986443 377776 5


Q ss_pred             ccEEEccCCCCCh
Q 015457          374 LRSLTLESCKVTA  386 (406)
Q Consensus       374 L~~l~l~~~~~~~  386 (406)
                      |+++++++|++..
T Consensus       547 L~~l~l~~N~~~c  559 (606)
T 3vq2_A          547 LAFFNLTNNSVAC  559 (606)
T ss_dssp             CCEEECCSCCCCC
T ss_pred             CcEEEccCCCccc
Confidence            9999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.3e-38  Score=304.93  Aligned_cols=142  Identities=23%  Similarity=0.179  Sum_probs=101.2

Q ss_pred             ccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCC
Q 015457            3 ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL   82 (406)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   82 (406)
                      ..|.++++|++|++++|. +....+..|.++++|++|++++|.........+..+++|++|++++|. +....+..+..+
T Consensus        43 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l  120 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQ  120 (680)
T ss_dssp             GGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTC
T ss_pred             HHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHcccc
Confidence            457888889999998886 455566778888888888888876443333457788888888888754 455555667778


Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHh--cCCCCcEEEcCCccCChh
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS--ALGSLFYLNLNRCQLSDD  146 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~  146 (406)
                      ++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+.  .+++|++|++++|.+...
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred             CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence            8888888888777766566667777888888877777666555543  346677777776655443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=305.59  Aligned_cols=377  Identities=21%  Similarity=0.257  Sum_probs=221.8

Q ss_pred             cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457            4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT   83 (406)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   83 (406)
                      .|.++++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|+++++. +.......++.++
T Consensus        47 ~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~  124 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK  124 (570)
T ss_dssp             TTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCT
T ss_pred             HhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccc
Confidence            46667777777777765 444445566677777777777766444334556667777777777643 3333333466777


Q ss_pred             CccEEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC----cEEEcCCccCChhhhhhc-------
Q 015457           84 NLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSDDGCEKF-------  151 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~-------  151 (406)
                      +|++|++++|.+... .+..+.++++|++|++++|.+....+..+..+++|    +++++++|.+....+..+       
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~  204 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK  204 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence            777777777766542 24556677777777777776666555555555444    556665554443322222       


Q ss_pred             --------------------------------------------------------------------------cCCCCc
Q 015457          152 --------------------------------------------------------------------------SKIGSL  157 (406)
Q Consensus       152 --------------------------------------------------------------------------~~l~~L  157 (406)
                                                                                                ..+++|
T Consensus       205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L  284 (570)
T 2z63_A          205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV  284 (570)
T ss_dssp             EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred             EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence                                                                                      223444


Q ss_pred             cEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHh-------------------hhCCCCCCEEEcCCCcCCch
Q 015457          158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-------------------LTGLCNLKCLELSDTQVGSS  218 (406)
Q Consensus       158 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~L~~l~l~~~~~~~~  218 (406)
                      +.++++++.+. .+|..+..+ +|++|++.+|.+.......                   ...+++|+.|+++++.+...
T Consensus       285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~  362 (570)
T 2z63_A          285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK  362 (570)
T ss_dssp             SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred             cEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc
Confidence            55555544443 233333333 4444444444333111100                   02344555555555554433


Q ss_pred             h--HHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH-HHHhcCCCCCEEEccCCCCChhHHHHh
Q 015457          219 G--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYL  295 (406)
Q Consensus       219 ~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~  295 (406)
                      .  +..+..+++|+.|++++|.+...... +..+++|++|++++|.+..... ..+..+++|+.|++++|.+....+..+
T Consensus       363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  441 (570)
T 2z63_A          363 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  441 (570)
T ss_dssp             EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence            2  23445556666666666655443222 5556666666666665554322 345566777777777777666555666


Q ss_pred             hcCCCCCEEEccCCCCC-hHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCc
Q 015457          296 RNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL  374 (406)
Q Consensus       296 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  374 (406)
                      ..+++|++|++++|.+. +..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  520 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL  520 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence            67777777777777765 233455666777777777777 6666656667777777777777777777666666777777


Q ss_pred             cEEEccCCCCCh
Q 015457          375 RSLTLESCKVTA  386 (406)
Q Consensus       375 ~~l~l~~~~~~~  386 (406)
                      +.+++++|++..
T Consensus       521 ~~L~l~~N~~~~  532 (570)
T 2z63_A          521 QKIWLHTNPWDC  532 (570)
T ss_dssp             CEEECCSSCBCC
T ss_pred             cEEEecCCcccC
Confidence            778887777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-38  Score=303.58  Aligned_cols=231  Identities=22%  Similarity=0.235  Sum_probs=144.8

Q ss_pred             CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457            9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL   88 (406)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   88 (406)
                      +++++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. +.......+..+++|++|
T Consensus        25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEE
Confidence            578888888876 455555667788888888888876555455567778888888888753 454555567788888888


Q ss_pred             EeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhcc--CCCCccEEEecCCc
Q 015457           89 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS--KIGSLKVLNLGFNE  166 (406)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~  166 (406)
                      ++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+.  ..++|+.|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            8888877766656677888888888888877776666677788888888888877665554443  34677777777766


Q ss_pred             cchhHHhhhcCC---------------------------CCCCeEEccCCCCChhhhHhhhCCC--CCCEEEcCCCcCCc
Q 015457          167 ITDECLVHLKGL---------------------------TNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGS  217 (406)
Q Consensus       167 ~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~  217 (406)
                      +.+..+..+..+                           ++|+.|+++++.+....+..+..++  +|+.|+++++.+..
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            554333322211                           3344444444444433333333332  25555555554444


Q ss_pred             hhHHhhcCCCCCcEEeccCCCCCh
Q 015457          218 SGLRHLSGLTNLESINLSFTGISD  241 (406)
Q Consensus       218 ~~~~~l~~~~~L~~L~l~~~~~~~  241 (406)
                      ..+..++.+++|+.|++++|.+..
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             cCcccccCcccccEeeCCCCccCc
Confidence            333444444455555554444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-38  Score=302.91  Aligned_cols=342  Identities=17%  Similarity=0.202  Sum_probs=281.3

Q ss_pred             ccccccCCCCccEEeecCCCCcCcC-----------------cccccc--CCCCccEEEeccCccChhHHHhhhcCCCCC
Q 015457           50 GLVNLKGLMKLESLNIKWCNCITDS-----------------DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLT  110 (406)
Q Consensus        50 ~~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (406)
                      .+..+.++++|++|++++|. ++..                 .+..+.  ++++|++|++++|.+.+..+..+.++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            45568889999999999976 5553                 566777  999999999999998887888899999999


Q ss_pred             EEEecCCC-CCh-hhHHHHhcC------CCCcEEEcCCccCChhhhh--hccCCCCccEEEecCCccchhHHhhhcCCCC
Q 015457          111 LLNLEGCP-VTA-ACLDSLSAL------GSLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTN  180 (406)
Q Consensus       111 ~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  180 (406)
                      +|++++|. +++ ..|..+..+      ++|++|++++|.+. ..+.  .+..+++|+.|++++|.+.+.+| .+..+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence            99999998 887 778888776      99999999999998 5666  89999999999999999986677 7888999


Q ss_pred             CCeEEccCCCCChhhhHhhhCCCC-CCEEEcCCCcCCchhHHhhcCC--CCCcEEeccCCCCChhHHHHhh-------CC
Q 015457          181 LESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKLA-------GL  250 (406)
Q Consensus       181 L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~  250 (406)
                      |+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .+..+...  ++|+.|++++|.++...+..+.       .+
T Consensus       355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred             CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence            999999999876 44556788888 9999999999874 34455544  4899999999999887666666       67


Q ss_pred             CCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcC-------CCCCEEEccCCCCChHHHHhhh--c
Q 015457          251 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-------KNLRSLEICGGGLTDAGVKHIK--D  321 (406)
Q Consensus       251 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~  321 (406)
                      ++|+.|++++|.++..+...+..+++|+.|++++|.++......+...       ++|++|++++|.++.. +..+.  .
T Consensus       433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~  511 (636)
T 4eco_A          433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATT  511 (636)
T ss_dssp             CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTT
T ss_pred             CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-Chhhhhcc
Confidence            899999999999998766677789999999999999985443333333       2999999999999954 55565  8


Q ss_pred             CCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee------CCccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhc
Q 015457          322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS------NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR  395 (406)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~  395 (406)
                      +++|+.|++++| .+.. .+..+..+++|+.|+++      +|.+.+..+..+..+++|++|++++|++..  +.   ..
T Consensus       512 l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--ip---~~  584 (636)
T 4eco_A          512 LPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK--VN---EK  584 (636)
T ss_dssp             CTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB--CC---SC
T ss_pred             CCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCc--cC---Hh
Confidence            999999999999 6776 56678899999999995      566777777788899999999999999843  21   11


Q ss_pred             CCCCccccC
Q 015457          396 DLPNLVSFR  404 (406)
Q Consensus       396 ~~~~l~~l~  404 (406)
                      -+++|+.|.
T Consensus       585 ~~~~L~~L~  593 (636)
T 4eco_A          585 ITPNISVLD  593 (636)
T ss_dssp             CCTTCCEEE
T ss_pred             HhCcCCEEE
Confidence            235666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=305.53  Aligned_cols=389  Identities=21%  Similarity=0.215  Sum_probs=285.5

Q ss_pred             CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457            9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL   88 (406)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   88 (406)
                      +++++|++++|. ++...+..|.++++|++|++++|......+..+..+++|++|++++|. ++...+..+..+++|++|
T Consensus        28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccc
Confidence            579999999997 556666678999999999999997555445678999999999999865 555666788999999999


Q ss_pred             EeccCccChhHHHhhhcCCCCCEEEecCCCCChh-hHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCc----cEEEec
Q 015457           89 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL----KVLNLG  163 (406)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~  163 (406)
                      +++++.+.......+.++++|++|++++|.+... .|..+..+++|++|++++|.+....+..++.+++|    +.++++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            9999998876655688999999999999988763 47889999999999999999887666666655555    667776


Q ss_pred             CCccchhHHhh---------------------------------------------------------------------
Q 015457          164 FNEITDECLVH---------------------------------------------------------------------  174 (406)
Q Consensus       164 ~~~~~~~~~~~---------------------------------------------------------------------  174 (406)
                      +|.+....+..                                                                     
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            66554332222                                                                     


Q ss_pred             ------------hcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHh-------------------h
Q 015457          175 ------------LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-------------------L  223 (406)
Q Consensus       175 ------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------------------l  223 (406)
                                  +..+++|+.+++.++.+.. .+..+..+ +|+.+++.++.+.......                   .
T Consensus       266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~  343 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  343 (570)
T ss_dssp             ETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred             cchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence                        2334555555555554432 12223333 4555555554443211100                   0


Q ss_pred             cCCCCCcEEeccCCCCChhH--HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH-HHhhcCCC
Q 015457          224 SGLTNLESINLSFTGISDGS--LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKN  300 (406)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~  300 (406)
                      ..+++|+.|++++|.++...  +..+..+++|+.|++++|.+...+.. +..+++|++|++++|.+....+ ..+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            34567777777777766532  45566778888888888877665433 6677888888888887765433 35678899


Q ss_pred             CCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCC-hhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEc
Q 015457          301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL  379 (406)
Q Consensus       301 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l  379 (406)
                      |++|++++|.+.+..+..+..+++|+.|++++| .+. ...+..+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence            999999999888777777888999999999999 454 345566778899999999999999877888889999999999


Q ss_pred             cCCCCChhhHHHHhhcCCCCccccCC
Q 015457          380 ESCKVTANDIKRLQSRDLPNLVSFRP  405 (406)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~l~~l~~  405 (406)
                      ++|++.......+  ..+++|+.+..
T Consensus       502 ~~n~l~~~~~~~~--~~l~~L~~L~l  525 (570)
T 2z63_A          502 ASNQLKSVPDGIF--DRLTSLQKIWL  525 (570)
T ss_dssp             CSSCCSCCCTTTT--TTCTTCCEEEC
T ss_pred             CCCcCCCCCHHHh--hcccCCcEEEe
Confidence            9999886433333  46777776643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.8e-38  Score=286.77  Aligned_cols=361  Identities=18%  Similarity=0.201  Sum_probs=191.0

Q ss_pred             CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccC-ccccccCCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457            9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS   87 (406)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   87 (406)
                      ++|++|++++|. +....+..|.++++|++|++++|..... .+..+..+++|++|++++|. +....+..+..+++|++
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence            345555555554 2333344455555555555555443211 12334555555555555532 23333444455555555


Q ss_pred             EEeccCccChhHHHh--hhcCCCCCEEEecCCCCChhhHHH-HhcCCCCcEEEcCCccCChhhhhhccCC--CCccEEEe
Q 015457           88 LQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNL  162 (406)
Q Consensus        88 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l  162 (406)
                      |++++|.+.+..+..  +.++++|++|++++|.+....|.. +..+++|++|++++|.+....+..+..+  .+++.+++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            555555554433332  455555555555555554443332 4455555555555555544444333332  34555555


Q ss_pred             cCCccchhHHhh--------hcCCCCCCeEEccCCCCChhhhHhhhC---CCCCCEEEcCCCcCCchhHHhhcCCCCCcE
Q 015457          163 GFNEITDECLVH--------LKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLES  231 (406)
Q Consensus       163 ~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  231 (406)
                      +++.+....+..        +..+++|+.|++++|.+....+..+..   .++|+.++++++........          
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------  257 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------  257 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----------
Confidence            555443211111        112344555555555444433333322   14444444444432111000          


Q ss_pred             EeccCCCCChhHHHHhh--CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCC
Q 015457          232 INLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  309 (406)
Q Consensus       232 L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  309 (406)
                          ...+.......+.  ..++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus       258 ----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          258 ----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             ----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence                0000000000111  2356777777777776655556666777777777777777665666667777777777777


Q ss_pred             CCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      .+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++......+..+++|++|++++|++..
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            777666666677777777777777 6666656666777777777777777776555566677777777777777655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3e-37  Score=289.95  Aligned_cols=179  Identities=19%  Similarity=0.181  Sum_probs=108.1

Q ss_pred             CCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHH---hhCCCCCcEEECCCCCCChHHH--HHHhcCCCCC
Q 015457          204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLT  278 (406)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~  278 (406)
                      +|+.++++++.+...+...+..+++|+.|++++|.+++..+..   ++.+++|+.|++++|.++....  ..+..+++|+
T Consensus       311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence            3444445444444333333345666777777777666544332   4456677777777776665432  3456666777


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHH-----------------hhhcCCCCCEEeccCCCCCChhHH
Q 015457          279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQNCNLTDKTL  341 (406)
Q Consensus       279 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------~~~~~~~L~~L~l~~~~~~~~~~~  341 (406)
                      .|++++|.++.. +..+..+++|++|++++|.++.....                 ....+++|++|++++| .+.....
T Consensus       391 ~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~  468 (549)
T 2z81_A          391 SLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD  468 (549)
T ss_dssp             EEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred             EEECCCCCCccC-ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC
Confidence            777777666532 23344455555555555554432110                 0135677888888887 5553322


Q ss_pred             HHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          342 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       342 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                        ...+++|+.|++++|++++..+..+..+++|+.+++++|++..
T Consensus       469 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          469 --ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             --cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence              3567888888888888887666677788888888888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.2e-37  Score=286.89  Aligned_cols=371  Identities=18%  Similarity=0.177  Sum_probs=265.9

Q ss_pred             CcccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCcccccc
Q 015457            1 MTENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS   80 (406)
Q Consensus         1 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   80 (406)
                      ||..+.  ++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. ++..+ ..  
T Consensus        15 ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp-~~--   87 (520)
T 2z7x_B           15 VPKDLS--QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS-CH--   87 (520)
T ss_dssp             CCCSCC--TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEE-CC--
T ss_pred             cccccc--ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecC-cc--
Confidence            355554  789999999987 556667789999999999999988655556678899999999999864 44322 22  


Q ss_pred             CCCCccEEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC--cEEEcCCccC--ChhhhhhccC--
Q 015457           81 GLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQL--SDDGCEKFSK--  153 (406)
Q Consensus        81 ~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~--  153 (406)
                      .+++|++|++++|.+... .+..+.++++|++|++++|.+...   .+..+++|  +++++.+|.+  ....+..+..  
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccccc
Confidence            789999999999988763 356788899999999999888763   45666777  8888888766  3222222222  


Q ss_pred             ------------------------CCCccEEEec------------------------------CCccchhHHhhh---c
Q 015457          154 ------------------------IGSLKVLNLG------------------------------FNEITDECLVHL---K  176 (406)
Q Consensus       154 ------------------------l~~L~~L~l~------------------------------~~~~~~~~~~~~---~  176 (406)
                                              +++|+.++++                              ++.+.+..+..+   .
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  244 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV  244 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence                                    2333333333                              333222111111   0


Q ss_pred             CCCCCCeEEccCCCCChhhhHhh-----hCCC--------------------------CCCEEEcCCCcCCchhHHhhcC
Q 015457          177 GLTNLESLNLDSCGIGDEGLVNL-----TGLC--------------------------NLKCLELSDTQVGSSGLRHLSG  225 (406)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~--------------------------~L~~l~l~~~~~~~~~~~~l~~  225 (406)
                      ..++|++|++++|.+.+..+..+     ..++                          +|+.|+++++.+....  ....
T Consensus       245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~  322 (520)
T 2z7x_B          245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSK  322 (520)
T ss_dssp             HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSS
T ss_pred             hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhh
Confidence            12355566655554432222222     3333                          4555555555543321  1257


Q ss_pred             CCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH--HHHHhcCCCCCEEEccCCCCCh-hHHHHhhcCCCCC
Q 015457          226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLR  302 (406)
Q Consensus       226 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~  302 (406)
                      +++|+.|++++|.+++..+..+..+++|++|++++|.+++.+  +..+..+++|+.|++++|.+.. .....+..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            889999999999998877777888999999999999999743  3668899999999999999987 4444577889999


Q ss_pred             EEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457          303 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  382 (406)
Q Consensus       303 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~  382 (406)
                      +|++++|.+++..+..++  ++|+.|++++| .+. ..+..+..+++|+.|++++|+++......+..+++|+++++++|
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCC-ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            999999999876555443  79999999999 677 44555568999999999999998765556788999999999999


Q ss_pred             CCChh
Q 015457          383 KVTAN  387 (406)
Q Consensus       383 ~~~~~  387 (406)
                      ++.+.
T Consensus       479 ~~~c~  483 (520)
T 2z7x_B          479 PWDCS  483 (520)
T ss_dssp             CBCCC
T ss_pred             CCccc
Confidence            98763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=313.02  Aligned_cols=379  Identities=21%  Similarity=0.234  Sum_probs=210.6

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcC-cccccc
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-DMKPLS   80 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~   80 (406)
                      |..|.++++|++|++++|.....+.+..|.++++|++|++++|......+..+..+++|++|++++|...... ....+.
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            5667888888888888886555555677888888888888888765555677888888888888886433211 222377


Q ss_pred             CCCCccEEEeccCccChhHH-HhhhcCCCCCEEEecCCCCChhhHHHHhcC--CCCcEEEcCCccCChhhhhhccCC---
Q 015457           81 GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKI---  154 (406)
Q Consensus        81 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l---  154 (406)
                      .+++|++|++++|.+....+ ..+.++++|++|++++|.+....+..+..+  ++|+.+++++|.+....+..+..+   
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP  200 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence            88888888888888766543 467888888888888887766555544443  455555555544443332222222   


Q ss_pred             -----------------------------------------------------------------CCccEEEecCCccch
Q 015457          155 -----------------------------------------------------------------GSLKVLNLGFNEITD  169 (406)
Q Consensus       155 -----------------------------------------------------------------~~L~~L~l~~~~~~~  169 (406)
                                                                                       ++|+.|++++|.+..
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~  280 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS  280 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence                                                                             234444444444433


Q ss_pred             hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhC
Q 015457          170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG  249 (406)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~  249 (406)
                      ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..
T Consensus       281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  360 (844)
T 3j0a_A          281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF  360 (844)
T ss_dssp             ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred             cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence            33333444444455555444444443444444445555555544444333334444445555555554444333333444


Q ss_pred             CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCC--------------------hh-HHHHhhcCCCCCEEEccC
Q 015457          250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--------------------DS-GAAYLRNFKNLRSLEICG  308 (406)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~-~~~~~~~~~~L~~L~l~~  308 (406)
                      +++|+.|++++|.++...     .+++|+.+.+++|.++                    .. ....+..+++|+.|++++
T Consensus       361 l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  435 (844)
T 3j0a_A          361 LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ  435 (844)
T ss_dssp             CCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred             CCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence            445555555544443311     1222333333222222                    10 112233556666666666


Q ss_pred             CCCChHHHH-hhhcCCCCCEEeccCCCCCCh-----hHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457          309 GGLTDAGVK-HIKDLSSLTLLNLSQNCNLTD-----KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  382 (406)
Q Consensus       309 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~  382 (406)
                      |.+.+.... .+..+++|+.|++++| .+..     ..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus       436 N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  514 (844)
T 3j0a_A          436 NRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN  514 (844)
T ss_dssp             CCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred             CcccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence            655533211 1223455555555555 3321     11123445666777777777766666666667777777777777


Q ss_pred             CCCh
Q 015457          383 KVTA  386 (406)
Q Consensus       383 ~~~~  386 (406)
                      +++.
T Consensus       515 ~l~~  518 (844)
T 3j0a_A          515 RLTV  518 (844)
T ss_dssp             CCSS
T ss_pred             CCCc
Confidence            6654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-37  Score=300.07  Aligned_cols=351  Identities=18%  Similarity=0.175  Sum_probs=274.4

Q ss_pred             HHHHhcCCCCcEeeccCcccccC-----------------cccccc--CCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457           27 MKAFAGLINLVKLDLERCTRIHG-----------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS   87 (406)
Q Consensus        27 ~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   87 (406)
                      |..+.++++|++|++++|.....                 .|..+.  .+++|++|++++|.. ....+..+.++++|++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQS  519 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCE
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCE
Confidence            45688899999999999874431                 566666  899999999998754 3445678889999999


Q ss_pred             EEeccCc-cCh-hHHHhhhcC-------CCCCEEEecCCCCChhhHH--HHhcCCCCcEEEcCCccCChhhhhhccCCCC
Q 015457           88 LQISCSK-VTD-SGIAYLKGL-------QKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGS  156 (406)
Q Consensus        88 L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  156 (406)
                      |++++|. +++ ..+..+..+       ++|+.|++++|.+.. .|.  .+..+++|++|++++|.+. ..+ .+..+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            9999997 886 566555544       499999999999884 566  7889999999999999988 445 7888999


Q ss_pred             ccEEEecCCccchhHHhhhcCCCC-CCeEEccCCCCChhhhHhhhCCC--CCCEEEcCCCcCCchhHH---hhc--CCCC
Q 015457          157 LKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLR---HLS--GLTN  228 (406)
Q Consensus       157 L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~---~l~--~~~~  228 (406)
                      |+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+...+  +|+.|++++|.+....+.   .+.  .+++
T Consensus       597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            999999999988 77777888888 999999999887 3344444443  499999999987653321   112  3458


Q ss_pred             CcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc-------CCCCCEEEccCCCCChhHHHHhh--cCC
Q 015457          229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-------LTGLTHLDLFGARITDSGAAYLR--NFK  299 (406)
Q Consensus       229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~  299 (406)
                      |+.|++++|.++......+..+++|+.|++++|.+...+...+..       +++|+.|++++|.++.. +..+.  .++
T Consensus       675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~  753 (876)
T 4ecn_A          675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLP  753 (876)
T ss_dssp             EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCT
T ss_pred             cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCC
Confidence            999999999998765556668999999999999988654333322       23899999999999853 45554  899


Q ss_pred             CCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCC-----CCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCc
Q 015457          300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL  374 (406)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  374 (406)
                      +|+.|++++|.+.+. +..+..+++|+.|++++|.     .+....+..+..+++|+.|++++|.+.. .+..+  .++|
T Consensus       754 ~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l--~~~L  829 (876)
T 4ecn_A          754 YLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQL  829 (876)
T ss_dssp             TCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--CSSS
T ss_pred             CcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh--cCCC
Confidence            999999999999884 6678889999999998732     4556667788899999999999999854 33333  3699


Q ss_pred             cEEEccCCCCChhh
Q 015457          375 RSLTLESCKVTAND  388 (406)
Q Consensus       375 ~~l~l~~~~~~~~~  388 (406)
                      +.|++++|++....
T Consensus       830 ~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          830 YILDIADNPNISID  843 (876)
T ss_dssp             CEEECCSCTTCEEE
T ss_pred             CEEECCCCCCCccC
Confidence            99999999986643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.3e-37  Score=286.98  Aligned_cols=388  Identities=17%  Similarity=0.122  Sum_probs=252.4

Q ss_pred             CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457            9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL   88 (406)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   88 (406)
                      ++|++|++++|. ++...+..|.++++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|++|
T Consensus        26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence            578888888886 455555667888888888888887554444567888888888888753 555555667788888888


Q ss_pred             EeccCccChh-HHHhhhcCCCCCEEEecCCC-CChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc
Q 015457           89 QISCSKVTDS-GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  166 (406)
Q Consensus        89 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (406)
                      ++++|.+... .+..+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            8888877643 23457778888888888886 444434567778888888888888877777777777888888888777


Q ss_pred             cchhHHhhhcCCCCCCeEEccCCCCChhh---hHhhhCCCCCCEEEcCCCcCCchhHH----------------------
Q 015457          167 ITDECLVHLKGLTNLESLNLDSCGIGDEG---LVNLTGLCNLKCLELSDTQVGSSGLR----------------------  221 (406)
Q Consensus       167 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~----------------------  221 (406)
                      ........+..+++|++|++++|.+....   ......+++|+.+++.++.+....+.                      
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            65333333456777777777777654321   01111223333443333322211110                      


Q ss_pred             -----------------------------------------hhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCC
Q 015457          222 -----------------------------------------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  260 (406)
Q Consensus       222 -----------------------------------------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  260 (406)
                                                               .....++|+.++++++.+.......+..+++|+.|++++
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~  343 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE  343 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence                                                     011234677777777776654444445789999999999


Q ss_pred             CCCChHHHHH---HhcCCCCCEEEccCCCCChhHH--HHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457          261 RQITDTGLAA---LTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  335 (406)
Q Consensus       261 ~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (406)
                      |.+.+..+..   +..+++|+.|++++|.++....  ..+..+++|++|++++|.++.. +..+..+++|++|++++| .
T Consensus       344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N-~  421 (549)
T 2z81_A          344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSST-G  421 (549)
T ss_dssp             SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTS-C
T ss_pred             CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCC-C
Confidence            9998864332   5678899999999999987643  4578899999999999988854 555666778888888877 4


Q ss_pred             CChhHHHH-----------------HHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcCCC
Q 015457          336 LTDKTLEL-----------------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP  398 (406)
Q Consensus       336 ~~~~~~~~-----------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  398 (406)
                      +.......                 ...+++|+.|++++|+++....  ...+++|++|++++|+++......+  ..++
T Consensus       422 l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~  497 (549)
T 2z81_A          422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIF--DRLT  497 (549)
T ss_dssp             CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGG--GGCT
T ss_pred             cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHH--hcCc
Confidence            43221100                 1145566666666666553221  2345667777777776664322222  2455


Q ss_pred             CccccC
Q 015457          399 NLVSFR  404 (406)
Q Consensus       399 ~l~~l~  404 (406)
                      +|+.+.
T Consensus       498 ~L~~L~  503 (549)
T 2z81_A          498 SLQKIW  503 (549)
T ss_dssp             TCCEEE
T ss_pred             ccCEEE
Confidence            555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=3.6e-35  Score=269.94  Aligned_cols=393  Identities=23%  Similarity=0.278  Sum_probs=302.3

Q ss_pred             CCCCceeeccCCccCCHHHH-HHHhcCCCCcEeeccCcccccC----ccccccCCCCccEEeecCCCCcCcCcccccc-C
Q 015457            8 LSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCITDSDMKPLS-G   81 (406)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~   81 (406)
                      .++|++|+++++. ++.... ..+..+++|++|++++|.....    .+..+..+++|++|++++|. +.+.....+. .
T Consensus         2 ~~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~   79 (461)
T 1z7x_W            2 SLDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG   79 (461)
T ss_dssp             CEEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred             Cccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence            3678999999887 455544 4488999999999999984432    23456788999999999865 4433333332 4


Q ss_pred             CC----CccEEEeccCccChh----HHHhhhcCCCCCEEEecCCCCChhhHHHHhc-----CCCCcEEEcCCccCChhh-
Q 015457           82 LT----NLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-----LGSLFYLNLNRCQLSDDG-  147 (406)
Q Consensus        82 ~~----~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~-  147 (406)
                      ++    +|++|++++|.+.+.    .+..+..+++|++|++++|.+....+..+..     .++|++|++++|.+.... 
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            44    799999999998853    3677889999999999999987655554432     568999999999988754 


Q ss_pred             ---hhhccCCCCccEEEecCCccchhHHhhhc-----CCCCCCeEEccCCCCChhh----hHhhhCCCCCCEEEcCCCcC
Q 015457          148 ---CEKFSKIGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQV  215 (406)
Q Consensus       148 ---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~  215 (406)
                         +..+..+++|+.|++++|.+....+..+.     ..++|+.|++++|.++...    +..+..+++|+.|+++++.+
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence               44566779999999999998765444442     3679999999999887643    55567789999999999988


Q ss_pred             CchhHHhh-----cCCCCCcEEeccCCCCChhH----HHHhhCCCCCcEEECCCCCCChHHHHHHhc-----CCCCCEEE
Q 015457          216 GSSGLRHL-----SGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLD  281 (406)
Q Consensus       216 ~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~  281 (406)
                      .......+     ..+++|+.|++++|.+++..    +..+..+++|++|++++|.+.+.+...+..     .++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            76543322     35899999999999998863    455667899999999999998766555543     36999999


Q ss_pred             ccCCCCChh----HHHHhhcCCCCCEEEccCCCCChHHHHhhhc-----CCCCCEEeccCCCCCCh----hHHHHHHcCC
Q 015457          282 LFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQNCNLTD----KTLELISGLT  348 (406)
Q Consensus       282 l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~----~~~~~l~~~~  348 (406)
                      +++|.++..    .+..+..+++|++|++++|.+.+.++..+..     .++|+.|++++| .+..    ..+..+..++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCC
Confidence            999999875    3455677899999999999998887766653     689999999999 7886    5667788899


Q ss_pred             CccEEEeeCCccChhHHHhcC-----CCCCccEEEccCCCCChhhHHHH--hhcCCCCcccc
Q 015457          349 GLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTANDIKRL--QSRDLPNLVSF  403 (406)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~l~l~~~~~~~~~~~~~--~~~~~~~l~~l  403 (406)
                      +|++|++++|++++.....+.     ..++|+.|.+.++.+.....+.+  ....+|+++.+
T Consensus       399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~  460 (461)
T 1z7x_W          399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  460 (461)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence            999999999999886655442     34579999999988776443322  23477887654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.5e-37  Score=281.46  Aligned_cols=345  Identities=19%  Similarity=0.201  Sum_probs=252.1

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCcc--ccc
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--KPL   79 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~   79 (406)
                      |..+.++++|++|++++|.......+..|.++++|++|++++|......+..+..+++|++|++++|.. +...+  ..+
T Consensus        47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~  125 (455)
T 3v47_A           47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFF  125 (455)
T ss_dssp             TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTT
T ss_pred             hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC-CccccCcccc
Confidence            667899999999999999754455567799999999999999986655677899999999999999754 33222  337


Q ss_pred             cCCCCccEEEeccCccChhHHHh-hhcCCCCCEEEecCCCCChhhHHHHhcC--CCCcEEEcCCccCChhhhhh------
Q 015457           80 SGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEK------  150 (406)
Q Consensus        80 ~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~------  150 (406)
                      ..+++|++|++++|.+....+.. +.++++|++|++++|.+....+..+..+  .+|+.++++++.+....+..      
T Consensus       126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~  205 (455)
T 3v47_A          126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC  205 (455)
T ss_dssp             TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred             cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence            88999999999999988765544 7899999999999999888777666655  78999999999877644332      


Q ss_pred             --ccCCCCccEEEecCCccchhHHhhhcC---CCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhh--
Q 015457          151 --FSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--  223 (406)
Q Consensus       151 --~~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l--  223 (406)
                        +..+++|+.|++++|.+.+..+..+..   .++|+.++++++........ ...++.             .....+  
T Consensus       206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-------------~~~~~~~~  271 (455)
T 3v47_A          206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKD-------------PDNFTFKG  271 (455)
T ss_dssp             CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCC-------------CCTTTTGG
T ss_pred             ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhcc-------------Cccccccc
Confidence              335689999999999998877776643   38899999998854322110 000110             000011  


Q ss_pred             cCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457          224 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  303 (406)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  303 (406)
                      ...++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++
T Consensus       272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            12356777777777766655666666777777777777777655556666777777777777776665666677777777


Q ss_pred             EEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh
Q 015457          304 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       304 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  362 (406)
                      |++++|.+++..+..+..+++|++|++++| .+....+..+..+++|+.|++++|+++.
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence            777777777766666777777777777777 6666555556677777778877777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-38  Score=308.81  Aligned_cols=376  Identities=23%  Similarity=0.258  Sum_probs=269.3

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCcccc--ccCCCCccEEeecCCCCcCcCccccc
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPL   79 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~   79 (406)
                      |..|.++++|++|++++|. +....+..|.++++|++|++++|......+..  +..+++|++|++++|..........+
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~  144 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF  144 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG
T ss_pred             HHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhH
Confidence            5678999999999999997 56666788999999999999999755434443  88999999999999765443344578


Q ss_pred             cCCCCccEEEeccCccChhHHHhhhcC--CC------------------------------CCEEEecCCCCChhhHHHH
Q 015457           80 SGLTNLKSLQISCSKVTDSGIAYLKGL--QK------------------------------LTLLNLEGCPVTAACLDSL  127 (406)
Q Consensus        80 ~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~------------------------------L~~L~l~~~~~~~~~~~~~  127 (406)
                      .++++|++|++++|.+....+..+..+  ++                              |+.|++++|.+....+..+
T Consensus       145 ~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  224 (844)
T 3j0a_A          145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF  224 (844)
T ss_dssp             GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred             hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence            899999999999988765433333222  22                              6677776664433222222


Q ss_pred             h------------------------------------c--CCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch
Q 015457          128 S------------------------------------A--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD  169 (406)
Q Consensus       128 ~------------------------------------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  169 (406)
                      .                                    +  .++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  304 (844)
T 3j0a_A          225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK  304 (844)
T ss_dssp             GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred             HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence            1                                    1  2578889998888887777788899999999999999987


Q ss_pred             hHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhC
Q 015457          170 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG  249 (406)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~  249 (406)
                      ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++..     ..
T Consensus       305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~  379 (844)
T 3j0a_A          305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HF  379 (844)
T ss_dssp             ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SS
T ss_pred             CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cC
Confidence            7788899999999999999998877777888999999999999998877777788899999999999987642     12


Q ss_pred             CCCCc--------------------EEECCCCCCChHH-HHHHhcCCCCCEEEccCCCCChhHHH-HhhcCCCCCEEEcc
Q 015457          250 LSSLK--------------------SLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEIC  307 (406)
Q Consensus       250 ~~~L~--------------------~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~  307 (406)
                      +++|+                    .+++++|.+.... ...+..+++|+.|++++|.++..... .+..+++|+.|+++
T Consensus       380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls  459 (844)
T 3j0a_A          380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG  459 (844)
T ss_dssp             CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred             CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence            34444                    4444444444422 23345788888888888887753221 23446777777777


Q ss_pred             CCCCChH-----HHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457          308 GGGLTDA-----GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  382 (406)
Q Consensus       308 ~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~  382 (406)
                      +|.+...     .+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++...+..+.  ++|+.|++++|
T Consensus       460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N  536 (844)
T 3j0a_A          460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN  536 (844)
T ss_dssp             SCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred             CCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence            7776522     1233455667777777776 55555555566667777777777776654443332  55666666666


Q ss_pred             CCCh
Q 015457          383 KVTA  386 (406)
Q Consensus       383 ~~~~  386 (406)
                      +++.
T Consensus       537 ~l~~  540 (844)
T 3j0a_A          537 QLLA  540 (844)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-36  Score=292.14  Aligned_cols=341  Identities=15%  Similarity=0.152  Sum_probs=273.6

Q ss_pred             ccccccCCCCccEEeecCCCCcCc-----------------Ccccccc--CCCCccEEEeccCccChhHHHhhhcCCCCC
Q 015457           50 GLVNLKGLMKLESLNIKWCNCITD-----------------SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLT  110 (406)
Q Consensus        50 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (406)
                      .|..+.++++|++|++++|. ++.                 ..+..++  .+++|++|++++|.+.+..+..+.++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            45568899999999999976 444                 2456666  999999999999988877788899999999


Q ss_pred             EEEecCCC-CCh-hhHHHHhcCC-------CCcEEEcCCccCChhhhh--hccCCCCccEEEecCCccchhHHhhhcCCC
Q 015457          111 LLNLEGCP-VTA-ACLDSLSALG-------SLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLT  179 (406)
Q Consensus       111 ~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  179 (406)
                      .|++++|. +.+ ..|..+..++       +|++|++++|.+. ..|.  .+..+++|+.|++++|.+. .+| .+..++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence            99999998 887 6787776655       9999999999998 5666  8999999999999999998 666 788999


Q ss_pred             CCCeEEccCCCCChhhhHhhhCCCC-CCEEEcCCCcCCchhHHhhcCCC--CCcEEeccCCCCChhHHH---Hhh--CCC
Q 015457          180 NLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLS  251 (406)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~  251 (406)
                      +|+.|++++|.+. ..+..+..+++ |+.|++++|.+... +..+...+  +|+.|++++|.+....+.   .+.  ..+
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            9999999999987 55556788888 99999999998743 44555443  499999999988764321   112  345


Q ss_pred             CCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhc-------CCCCCEEEccCCCCChHHHHhhh--cC
Q 015457          252 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-------FKNLRSLEICGGGLTDAGVKHIK--DL  322 (406)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~  322 (406)
                      +|+.|++++|.+...+...+..+++|+.|++++|.+.......+..       +++|+.|++++|.++.. +..+.  .+
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l  752 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTL  752 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTC
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccC
Confidence            8999999999999877677778999999999999998544333332       23899999999999854 55665  89


Q ss_pred             CCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeC------CccChhHHHhcCCCCCccEEEccCCCCChhhHHHHhhcC
Q 015457          323 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD  396 (406)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~  396 (406)
                      ++|+.|++++| .+.. .+..+..+++|+.|++++      |.+.+..+..+..+++|+.|++++|++..  +   ...-
T Consensus       753 ~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~--I---p~~l  825 (876)
T 4ecn_A          753 PYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK--V---DEKL  825 (876)
T ss_dssp             TTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB--C---CSCC
T ss_pred             CCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc--c---CHhh
Confidence            99999999999 6766 466778999999999977      66777777788899999999999999843  2   1123


Q ss_pred             CCCccccC
Q 015457          397 LPNLVSFR  404 (406)
Q Consensus       397 ~~~l~~l~  404 (406)
                      +++|+.|.
T Consensus       826 ~~~L~~Ld  833 (876)
T 4ecn_A          826 TPQLYILD  833 (876)
T ss_dssp             CSSSCEEE
T ss_pred             cCCCCEEE
Confidence            35666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-34  Score=264.85  Aligned_cols=345  Identities=29%  Similarity=0.356  Sum_probs=279.7

Q ss_pred             CCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccE
Q 015457            8 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS   87 (406)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   87 (406)
                      ++++++|++.++.. ...  +.+..+++|++|++++|... ..+. +..+++|++|++++|.. .....  +..+++|++
T Consensus        45 l~~l~~L~l~~~~i-~~l--~~~~~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGI-KSI--DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQI-ADITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCC-CCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCC-ccC--cchhhhcCCCEEECCCCccC-Cchh-hhccccCCEEECCCCcc-ccChh--hcCCCCCCE
Confidence            57899999998863 332  24788999999999998743 3333 88899999999998654 33332  889999999


Q ss_pred             EEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCcc
Q 015457           88 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  167 (406)
Q Consensus        88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  167 (406)
                      |++++|.+.+..+  +.++++|++|++++|.+... + .+..+++|+++++.+ .+...  ..+..+++|+.|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence            9999998886543  88999999999999987764 2 478899999999964 33332  2378889999999999988


Q ss_pred             chhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHh
Q 015457          168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL  247 (406)
Q Consensus       168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  247 (406)
                      ...  ..+..+++|++|++++|.+....+  +..+++|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            753  347788999999999998866544  66789999999999988764  357788999999999998877544  7


Q ss_pred             hCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCE
Q 015457          248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  327 (406)
Q Consensus       248 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  327 (406)
                      ..+++|+.|++++|.+.....  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            789999999999999887543  7788999999999999887544  7789999999999999988654  678999999


Q ss_pred             EeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       328 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      |++++| .+...  ..+..+++|+.|++++|++++..+  +..+++|+.+++++|++..
T Consensus       336 L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          336 LFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             eECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            999999 66654  467789999999999999988665  7889999999999998765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.1e-34  Score=262.92  Aligned_cols=358  Identities=22%  Similarity=0.284  Sum_probs=283.1

Q ss_pred             CCCcEeeccCcccccCcccc-ccCCCCccEEeecCCCCcCcC----ccccccCCCCccEEEeccCccChhHHHhh-hcCC
Q 015457           34 INLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ  107 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~  107 (406)
                      ++|++|+++++......... +..+++|++|++++|. ++..    ....+..+++|++|+++++.+.+..+..+ ..++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            57899999988754433333 6789999999999976 3432    23456678999999999999887666544 4455


Q ss_pred             ----CCCEEEecCCCCCh----hhHHHHhcCCCCcEEEcCCccCChhhhhhcc-----CCCCccEEEecCCccchh----
Q 015457          108 ----KLTLLNLEGCPVTA----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-----KIGSLKVLNLGFNEITDE----  170 (406)
Q Consensus       108 ----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----  170 (406)
                          +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.+...    
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                69999999999884    4577788999999999999998765544332     356899999999988763    


Q ss_pred             HHhhhcCCCCCCeEEccCCCCChhhhHhhh-----CCCCCCEEEcCCCcCCchh----HHhhcCCCCCcEEeccCCCCCh
Q 015457          171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLT-----GLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISD  241 (406)
Q Consensus       171 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~  241 (406)
                      ++..+..+++|++|++++|.+.......+.     ..++|+.|+++++.+....    ...+..+++|+.|++++|.+++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            456667789999999999988765554443     3679999999999987643    4556678999999999998877


Q ss_pred             hHHHHh-----hCCCCCcEEECCCCCCChHH----HHHHhcCCCCCEEEccCCCCChhHHHHhhc-----CCCCCEEEcc
Q 015457          242 GSLRKL-----AGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEIC  307 (406)
Q Consensus       242 ~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~  307 (406)
                      .....+     ..+++|++|++++|.++...    ...+..+++|++|++++|.+++.....+..     .++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            543332     25899999999999999864    345567899999999999998766555433     3799999999


Q ss_pred             CCCCChHH----HHhhhcCCCCCEEeccCCCCCChhHHHHHHc-----CCCccEEEeeCCccCh----hHHHhcCCCCCc
Q 015457          308 GGGLTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-----LTGLVSLNVSNSRITS----AGLRHLKPLKNL  374 (406)
Q Consensus       308 ~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~~L  374 (406)
                      +|.+++..    +..+..+++|+.|++++| .+.+..+..+..     .++|+.|++++|.+++    ..+..+..+++|
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            99998764    445667899999999999 788776666553     6799999999999997    556667789999


Q ss_pred             cEEEccCCCCChhhHHHHh
Q 015457          375 RSLTLESCKVTANDIKRLQ  393 (406)
Q Consensus       375 ~~l~l~~~~~~~~~~~~~~  393 (406)
                      ++|++++|+++..++..+.
T Consensus       401 ~~L~l~~N~i~~~~~~~l~  419 (461)
T 1z7x_W          401 RELDLSNNCLGDAGILQLV  419 (461)
T ss_dssp             CEEECCSSSCCHHHHHHHH
T ss_pred             cEEECCCCCCCHHHHHHHH
Confidence            9999999999998877765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.2e-35  Score=275.50  Aligned_cols=363  Identities=18%  Similarity=0.169  Sum_probs=258.5

Q ss_pred             CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE
Q 015457            9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL   88 (406)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   88 (406)
                      ++|++|++++|. +....+..|.++++|++|++++|......+..+..+++|++|++++|. ++.....   .+++|++|
T Consensus        52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC---PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC---CCTTCSEE
T ss_pred             CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc---ccccCCEE
Confidence            788888888887 455556678888889999998887555455668888889999988865 3432222   78888889


Q ss_pred             EeccCccChhH-HHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC--cEEEcCCccC--Chhhhhhcc-----------
Q 015457           89 QISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQL--SDDGCEKFS-----------  152 (406)
Q Consensus        89 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~-----------  152 (406)
                      ++++|.+.... +..+.++++|++|+++++.+...   .+..+++|  +++++++|.+  ....+..+.           
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            88888887643 36788888888898888887653   33444555  8888887766  333332222           


Q ss_pred             ---------------CCCCccEEEecCCc----------------------------cchh----HHhhhcCCCCCCeEE
Q 015457          153 ---------------KIGSLKVLNLGFNE----------------------------ITDE----CLVHLKGLTNLESLN  185 (406)
Q Consensus       153 ---------------~l~~L~~L~l~~~~----------------------------~~~~----~~~~~~~~~~L~~L~  185 (406)
                                     .+++|+.+++++|.                            +.+.    .+.. ...++|++|+
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~  282 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLN  282 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEE
Confidence                           23345555554442                            1110    1111 1123666777


Q ss_pred             ccCCCCChhhhHhh-----h--------------------------CCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEec
Q 015457          186 LDSCGIGDEGLVNL-----T--------------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  234 (406)
Q Consensus       186 l~~~~~~~~~~~~~-----~--------------------------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  234 (406)
                      +++|.+....+..+     .                          ...+|+.++++++.+....  ....+++|+.|++
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  360 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence            76665442222211     1                          1245777777776654322  1267899999999


Q ss_pred             cCCCCChhHHHHhhCCCCCcEEECCCCCCChHH--HHHHhcCCCCCEEEccCCCCCh-hHHHHhhcCCCCCEEEccCCCC
Q 015457          235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGL  311 (406)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  311 (406)
                      ++|.+++..+..+..+++|+.|++++|.++..+  +..+..+++|+.|++++|.++. .....+..+++|++|++++|.+
T Consensus       361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            999998877777888999999999999998743  3557889999999999999987 4444577889999999999999


Q ss_pred             ChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ++..+..++  ++|+.|++++| .+... +..+..+++|+.|++++|.++......+..+++|+.+++++|++..
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N-~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNN-RIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSS-CCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             Ccchhhhhc--CcCCEEECCCC-cCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            876554433  79999999999 67743 4444589999999999999997555557889999999999999876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.4e-33  Score=254.52  Aligned_cols=328  Identities=30%  Similarity=0.416  Sum_probs=274.3

Q ss_pred             cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457            4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT   83 (406)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   83 (406)
                      .+..+++|++|++++|. +....+  +.++++|++|++++|.... .+. +..+++|++|++++|. +....  .+..++
T Consensus        63 ~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~-l~~~~--~~~~l~  134 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNNQ-ITDID--PLKNLT  134 (466)
T ss_dssp             TGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCCG--GGTTCT
T ss_pred             chhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEECCCCC-CCCCh--HHcCCC
Confidence            47789999999999997 444433  8999999999999987443 333 8899999999999875 44332  388999


Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      +|++|++++|.+.+..  .+..+++|+.|++++ .+....  .+..+++|++|++++|.+...  ..+..+++|+.|+++
T Consensus       135 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  207 (466)
T 1o6v_A          135 NLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT  207 (466)
T ss_dssp             TCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECCCCccCCCh--hhccCCcccEeecCC-cccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEec
Confidence            9999999999887643  588999999999974 444432  388999999999999998754  347889999999999


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  243 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  243 (406)
                      +|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+.|+++++.+.....  +..+++|+.|++++|.++...
T Consensus       208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~  281 (466)
T 1o6v_A          208 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS  281 (466)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG
T ss_pred             CCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc
Confidence            999886544  67789999999999988654  357789999999999999876644  788999999999999988754


Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  323 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  323 (406)
                      +  +..+++|+.|++++|.+.+...  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..++
T Consensus       282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~  353 (466)
T 1o6v_A          282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT  353 (466)
T ss_dssp             G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence            4  7889999999999999988543  7889999999999999987654  77899999999999999886  4678899


Q ss_pred             CCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChh
Q 015457          324 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  363 (406)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  363 (406)
                      +|+.|++++| .+....+  +..+++|+.|++++|++++.
T Consensus       354 ~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          354 NINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCC
Confidence            9999999999 6766655  78999999999999998763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.9e-33  Score=245.39  Aligned_cols=307  Identities=27%  Similarity=0.353  Sum_probs=216.7

Q ss_pred             ccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 015457           54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL  133 (406)
Q Consensus        54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  133 (406)
                      +..+++|++|+++++.. ..  ...+..+++|++|+++++.+.+...  +.++++|++|++++|.+...  ..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~i-~~--~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKV-AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCC-CC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCcc-cc--chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            34456666666666432 21  1235566677777777666665433  66667777777777766553  246667777


Q ss_pred             cEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457          134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  213 (406)
Q Consensus       134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  213 (406)
                      ++|++++|.+....+  +..+++|+.|++++|......+ .+..+++|++|+++++.+.....  +..+++|+.++++++
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            777777776654332  6666777777777764432222 36677777777777776654433  567777888888877


Q ss_pred             cCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHH
Q 015457          214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  293 (406)
Q Consensus       214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  293 (406)
                      .+.....  +..+++|+.++++++.++....  +..+++|++|++++|.++....  +..+++|++|++++|.++..  .
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~  259 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N  259 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence            7665433  6677888888888887766443  6677888888888888877543  67788888888888888764  3


Q ss_pred             HhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCC
Q 015457          294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN  373 (406)
Q Consensus       294 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  373 (406)
                      .+..+++|++|++++|.+.+.  ..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++..+  +..+++
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~  334 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK  334 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred             hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence            567788999999999888775  35778899999999999 7888888888899999999999999887655  678899


Q ss_pred             ccEEEccCCCCC
Q 015457          374 LRSLTLESCKVT  385 (406)
Q Consensus       374 L~~l~l~~~~~~  385 (406)
                      |+.+++++|+++
T Consensus       335 L~~L~l~~N~i~  346 (347)
T 4fmz_A          335 MDSADFANQVIK  346 (347)
T ss_dssp             CSEESSSCC---
T ss_pred             cceeehhhhccc
Confidence            999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=266.77  Aligned_cols=302  Identities=20%  Similarity=0.226  Sum_probs=225.8

Q ss_pred             CCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEE
Q 015457           58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  137 (406)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  137 (406)
                      +++++|+++++ .++......+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            57888888874 35555566777888888888888888776677788888888888888887776555677788888888


Q ss_pred             cCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc
Q 015457          138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS  217 (406)
Q Consensus       138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  217 (406)
                      +++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++.++.+..
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            88888777667777788888888888887776666677778888888888887776666677778888888888887776


Q ss_pred             hhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhc
Q 015457          218 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  297 (406)
Q Consensus       218 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  297 (406)
                      .....+..+++|+.|+++++......+.......+|++|++++|.++..+...+..+++|+.|++++|.++...+..+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            66666777788888888777554444333444457788888877777766666777777888888877777666666677


Q ss_pred             CCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          298 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       298 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                      +++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++.
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence            777788888777777766666777777777777777 666655556667777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.5e-32  Score=240.41  Aligned_cols=306  Identities=29%  Similarity=0.346  Sum_probs=229.8

Q ss_pred             hcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCC
Q 015457           31 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT  110 (406)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (406)
                      ..+++|++|+++++....  .+.+..+++|++|++++|. ++....  +..+++|++|++++|.+...  ..+.++++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~--~~~~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC--CTTGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             hhcccccEEEEeCCcccc--chhhhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            456778888888766332  2346778888888888764 333322  77788888888888877653  3577888888


Q ss_pred             EEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCC
Q 015457          111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG  190 (406)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  190 (406)
                      +|++++|.+....+  +..+++|+++++++|..... ...+..+++|+.|+++++.+....+  +..+++|+.|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            88888887776533  77788888888888754432 2337778888888888887764333  6778888888888887


Q ss_pred             CChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHH
Q 015457          191 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA  270 (406)
Q Consensus       191 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  270 (406)
                      +.....  +..+++|+.++++++.+.....  +..+++|+.|++++|.++...+  +..+++|++|++++|.++..  ..
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  260 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA  260 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence            765433  6678888888888888766543  6778888888888888876544  77888899999988888774  45


Q ss_pred             HhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCc
Q 015457          271 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  350 (406)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  350 (406)
                      +..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+  +..+++|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKM  335 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG--GGGCTTC
T ss_pred             HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccC--hhhhhcc
Confidence            67888899999999888765  34778899999999999988888888888999999999998 5666554  7788999


Q ss_pred             cEEEeeCCccC
Q 015457          351 VSLNVSNSRIT  361 (406)
Q Consensus       351 ~~L~l~~~~~~  361 (406)
                      +.|++++|+++
T Consensus       336 ~~L~l~~N~i~  346 (347)
T 4fmz_A          336 DSADFANQVIK  346 (347)
T ss_dssp             SEESSSCC---
T ss_pred             ceeehhhhccc
Confidence            99999999865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.3e-34  Score=265.00  Aligned_cols=348  Identities=16%  Similarity=0.170  Sum_probs=253.8

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG   81 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   81 (406)
                      |..|.++++|++|++++|. +....+..|.++++|++|++++|... ..+..  .+++|++|++++|.......+..++.
T Consensus        38 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~  113 (520)
T 2z7x_B           38 TSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGN  113 (520)
T ss_dssp             HHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGG
T ss_pred             hhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhcc
Confidence            4568999999999999997 56666788999999999999998744 33333  79999999999976433345578889


Q ss_pred             CCCccEEEeccCccChhHHHhhhcCCCC--CEEEecCCCC--ChhhHHHH------------------------------
Q 015457           82 LTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV--TAACLDSL------------------------------  127 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~------------------------------  127 (406)
                      +++|++|++++|.+...   .+..+++|  +.|++++|.+  ....|..+                              
T Consensus       114 l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~  190 (520)
T 2z7x_B          114 MSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA  190 (520)
T ss_dssp             CTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS
T ss_pred             CCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc
Confidence            99999999999988763   45666777  8888888766  33222222                              


Q ss_pred             --------------------------hcCCCCcEEEcCCccCChhhhhhc---cCCCCccEEEecCCccchhHHhhh---
Q 015457          128 --------------------------SALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNLGFNEITDECLVHL---  175 (406)
Q Consensus       128 --------------------------~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~---  175 (406)
                                                ..+++|+.+++.++.+.+.....+   ...++|+.|++++|.+.+..|..+   
T Consensus       191 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  270 (520)
T 2z7x_B          191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY  270 (520)
T ss_dssp             EEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC
T ss_pred             ceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc
Confidence                                      233344444443333322111110   012355666665555543334333   


Q ss_pred             --cCCC--------------------------CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCC
Q 015457          176 --KGLT--------------------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT  227 (406)
Q Consensus       176 --~~~~--------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  227 (406)
                        ..++                          +|+.|+++++.+....  ....+++|+.|+++++.+....+..++.++
T Consensus       271 ~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  348 (520)
T 2z7x_B          271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT  348 (520)
T ss_dssp             CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS
T ss_pred             ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC
Confidence              3333                          4555666555543221  125789999999999999887777889999


Q ss_pred             CCcEEeccCCCCCh--hHHHHhhCCCCCcEEECCCCCCCh-HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEE
Q 015457          228 NLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  304 (406)
Q Consensus       228 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  304 (406)
                      +|+.|++++|.++.  ..+..+..+++|++|++++|.+.. .+...+..+++|+.|++++|.+++..+..+.  ++|+.|
T Consensus       349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L  426 (520)
T 2z7x_B          349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL  426 (520)
T ss_dssp             SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEE
T ss_pred             CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEE
Confidence            99999999999987  345678899999999999999987 5444567889999999999999875544332  799999


Q ss_pred             EccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh
Q 015457          305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  362 (406)
                      ++++|.++.. +..+..+++|+.|++++| .+.......+..+++|+.|++++|++..
T Consensus       427 ~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          427 DLHSNKIKSI-PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             ECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCCccccc-chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence            9999999855 555668999999999999 7776554558889999999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.9e-34  Score=261.82  Aligned_cols=301  Identities=21%  Similarity=0.193  Sum_probs=248.0

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  113 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  113 (406)
                      +++++|++++|......+..+..+++|++|++++| .+....+..+..+++|++|++++|.+...+...+.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            58899999988755555567888999999999885 45556667788899999999998888876666778889999999


Q ss_pred             ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457          114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  193 (406)
Q Consensus       114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  193 (406)
                      +++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++.+|.+..
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            99998888777778888999999999988887777788888999999999988887666778888999999999988877


Q ss_pred             hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457          194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  273 (406)
Q Consensus       194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  273 (406)
                      ..+..+..+++|+.|+++++......+.......+|+.|++++|.++......+..+++|+.|++++|.++......+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            76677788889999999887655444444444568999999999888777677888899999999999888776667778


Q ss_pred             CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457          274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  335 (406)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (406)
                      +++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+.
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            88999999999998887777788889999999999988887676777888999999998843

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=7e-32  Score=255.88  Aligned_cols=388  Identities=18%  Similarity=0.213  Sum_probs=247.3

Q ss_pred             CCCCCceeeccCCccCCHHHHHHHhc-CCC-CcEeeccCcccccC-ccc-cccCCCCccEEeecCCCCcCcCc----ccc
Q 015457            7 GLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRIHG-GLV-NLKGLMKLESLNIKWCNCITDSD----MKP   78 (406)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~----~~~   78 (406)
                      ++++|++|++++|. ++...+..+.. +++ |++|++++|..... ... ....+++|++|++++|.. .+..    ...
T Consensus       110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHH
Confidence            45555555555553 33333343433 333 55555555542111 111 122455666666655432 2111    112


Q ss_pred             ccCCCCccEEEeccCccC----hhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCC---hhhhhhc
Q 015457           79 LSGLTNLKSLQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKF  151 (406)
Q Consensus        79 ~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~  151 (406)
                      ...+++|++|+++++.+.    ......+.++++|+.|+++++.+.+ .+..+..+++|+++++......   ......+
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            234556666666555544    1222334455666666666655544 2445555666666666532211   1112334


Q ss_pred             cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCCcCCchh-HHhhcCCCCC
Q 015457          152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNL  229 (406)
Q Consensus       152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L  229 (406)
                      ..+++|+.+.+.+... ...+..+..+++|++|++++|.+..... ..+..+++|+.|++. +.+.... ......+++|
T Consensus       267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred             hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence            4556677777766433 2556667788899999999998765544 346789999999998 3333333 3334678999


Q ss_pred             cEEeccC-----------CCCChhHHHH-hhCCCCCcEEECCCCCCChHHHHHHhc-CCCCCEEEcc----CCCCCh---
Q 015457          230 ESINLSF-----------TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLF----GARITD---  289 (406)
Q Consensus       230 ~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~---  289 (406)
                      +.|++++           +.+++..... ...+++|++|.+..+.+++.....+.. +++|++|+++    .+.+++   
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            9999983           5676654444 346899999999888898877777665 8999999996    455664   


Q ss_pred             --hHHHHhhcCCCCCEEEccCCC--CChHHHHhhhc-CCCCCEEeccCCCCCChhH-HHHHHcCCCccEEEeeCCccChh
Q 015457          290 --SGAAYLRNFKNLRSLEICGGG--LTDAGVKHIKD-LSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSA  363 (406)
Q Consensus       290 --~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~  363 (406)
                        .....+..+++|++|+++.|.  +++.....+.. +++|+.|++++| .+.+.. +..+..+++|++|++++|++++.
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence              244456779999999998654  77777666654 899999999999 677654 44456899999999999998876


Q ss_pred             HHHhc-CCCCCccEEEccCCCCChhhHHHHhhcCCCCcc
Q 015457          364 GLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV  401 (406)
Q Consensus       364 ~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~  401 (406)
                      ....+ ..+++|+.|++++|+++..+++.+. ..+|.+.
T Consensus       504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~  541 (592)
T 3ogk_B          504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWN  541 (592)
T ss_dssp             HHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEE
T ss_pred             HHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcE
Confidence            55544 5789999999999999988877775 3666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.2e-33  Score=248.25  Aligned_cols=317  Identities=18%  Similarity=0.152  Sum_probs=242.9

Q ss_pred             CCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcE
Q 015457           56 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY  135 (406)
Q Consensus        56 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  135 (406)
                      .++++++++++++ .++......+..+++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3577888888774 355555555677888888888888877766667788888888888888887776777788888888


Q ss_pred             EEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcC
Q 015457          136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV  215 (406)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  215 (406)
                      |++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...   .+..+++|+.++++++.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888887765555667788888888888888766666777888888888888877654   245678888888888876


Q ss_pred             CchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHh
Q 015457          216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL  295 (406)
Q Consensus       216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  295 (406)
                      ...     ...++|+.|+++++.+.....   ...++|+.|++++|.+++.  ..+..+++|++|++++|.++...+..+
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            542     445688888888888776421   2357889999998888874  467788899999999998887777778


Q ss_pred             hcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCcc
Q 015457          296 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR  375 (406)
Q Consensus       296 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  375 (406)
                      ..+++|++|++++|.+++. +..+..+++|+.|++++| .+... +..+..+++|+.|++++|+++...   +..+++|+
T Consensus       269 ~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~  342 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK  342 (390)
T ss_dssp             TTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred             cccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceec-CccccccCcCCEEECCCCccceeC---chhhccCC
Confidence            8889999999999988775 334466889999999998 56543 334567889999999999987653   56788899


Q ss_pred             EEEccCCCCChhhHHHH
Q 015457          376 SLTLESCKVTANDIKRL  392 (406)
Q Consensus       376 ~l~l~~~~~~~~~~~~~  392 (406)
                      .|++++|++.......+
T Consensus       343 ~L~l~~N~~~~~~~~~~  359 (390)
T 3o6n_A          343 NLTLSHNDWDCNSLRAL  359 (390)
T ss_dssp             EEECCSSCEEHHHHHHH
T ss_pred             EEEcCCCCccchhHHHH
Confidence            99999999888766655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2e-33  Score=264.03  Aligned_cols=382  Identities=18%  Similarity=0.153  Sum_probs=267.7

Q ss_pred             CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457            7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK   86 (406)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   86 (406)
                      .|...++++++++. ++.++ ..+  .++|++|++++|......+..+..+++|++|++++| .++...+..+..+++|+
T Consensus        29 ~~~~~~~l~ls~~~-L~~ip-~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           29 SNELESMVDYSNRN-LTHVP-KDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             ----CCEEECTTSC-CCSCC-TTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred             ccCCCcEEEcCCCC-CccCC-CCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCC
Confidence            34556899999887 44433 222  389999999999866555568899999999999986 45666677788999999


Q ss_pred             EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhh-HHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457           87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN  165 (406)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (406)
                      +|++++|.+...+..   .+++|++|++++|.+.... |..++.+++|++|++++|.+.......+..+ +|+.|++++|
T Consensus       104 ~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n  179 (562)
T 3a79_B          104 YLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLV  179 (562)
T ss_dssp             EEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEES
T ss_pred             EEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecc
Confidence            999999998854332   7899999999999988743 5788999999999999998876433333333 4499999988


Q ss_pred             cc--chhHHhhhc--------------------------CCCCCCeEEccCCC---------------------------
Q 015457          166 EI--TDECLVHLK--------------------------GLTNLESLNLDSCG---------------------------  190 (406)
Q Consensus       166 ~~--~~~~~~~~~--------------------------~~~~L~~L~l~~~~---------------------------  190 (406)
                      .+  ....+..+.                          .+++|+.+++++|.                           
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence            77  433333332                          23455555555542                           


Q ss_pred             -CChhhhH---hhhCCCCCCEEEcCCCcCCchhHHhh-----cCC--------------------------CCCcEEecc
Q 015457          191 -IGDEGLV---NLTGLCNLKCLELSDTQVGSSGLRHL-----SGL--------------------------TNLESINLS  235 (406)
Q Consensus       191 -~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~  235 (406)
                       +......   .....++|++|+++++.+....+..+     ..+                          .+++.|+++
T Consensus       260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence             1111100   01123478888888777653222222     222                          345566666


Q ss_pred             CCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCCh--hHHHHhhcCCCCCEEEccCCCCCh
Q 015457          236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTD  313 (406)
Q Consensus       236 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~  313 (406)
                      ++.+.....  ...+++|++|++++|.+++..+..+..+++|+.|++++|.++.  ..+..+..+++|++|++++|.+.+
T Consensus       340 ~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          340 DTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             SSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             CCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence            555543210  1568899999999999998666777889999999999999987  345668899999999999999887


Q ss_pred             -HHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCChhhHHHH
Q 015457          314 -AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL  392 (406)
Q Consensus       314 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~  392 (406)
                       .....+..+++|+.|++++| .+....+..+.  ++|+.|++++|.++..... +..+++|++|++++|+++.-...  
T Consensus       418 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~--  491 (562)
T 3a79_B          418 HAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDG--  491 (562)
T ss_dssp             CCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSCCCCCCTT--
T ss_pred             ccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCcccChh-hcCCCCCCEEECCCCCCCCCCHH--
Confidence             43345677899999999999 67654433322  6999999999999864443 44899999999999998853222  


Q ss_pred             hhcCCCCccccCC
Q 015457          393 QSRDLPNLVSFRP  405 (406)
Q Consensus       393 ~~~~~~~l~~l~~  405 (406)
                      ....+++|+.+..
T Consensus       492 ~~~~l~~L~~L~l  504 (562)
T 3a79_B          492 VFDRLTSLQYIWL  504 (562)
T ss_dssp             STTTCTTCCCEEC
T ss_pred             HHhcCCCCCEEEe
Confidence            2346777777653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=1.4e-31  Score=253.81  Aligned_cols=396  Identities=18%  Similarity=0.172  Sum_probs=291.4

Q ss_pred             ccCCCCCceeeccCCccCC-------------HH-HHHHHhcCCCCcEeeccCcccccCccccccC-CCC-ccEEeecCC
Q 015457            5 LSGLSNLTSLSFRRNNAIT-------------AQ-GMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMK-LESLNIKWC   68 (406)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~-------------~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~   68 (406)
                      +.++++|++|++++|..+.             .. .......+++|++|++++|......+..+.. +++ |++|++++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            4678899999997764321             11 2233448999999999998644333444444 455 999999988


Q ss_pred             CCcCcCccccc-cCCCCccEEEeccCccChh----HHHhhhcCCCCCEEEecCCCCC----hhhHHHHhcCCCCcEEEcC
Q 015457           69 NCITDSDMKPL-SGLTNLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLN  139 (406)
Q Consensus        69 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~  139 (406)
                      ..+.......+ ..+++|++|+++++.+.+.    .......+++|++|+++++.+.    ...+..+..+++|++|++.
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~  228 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG  228 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence            64443333222 3789999999998876544    3345578899999999998876    3445556788999999999


Q ss_pred             CccCChhhhhhccCCCCccEEEecCCccc---hhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCC
Q 015457          140 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      +|.+.. .+..+..+++|+.|+++.....   ...+..+..+++|+.+.+.+... ...+..+..+++|++|+++++.+.
T Consensus       229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCC
T ss_pred             CccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCC
Confidence            988765 4567788899999999854322   12234456778999999987533 334555667899999999999876


Q ss_pred             chhH-HhhcCCCCCcEEeccCCCCChhHHHH-hhCCCCCcEEECC-----------CCCCChHHHHH-HhcCCCCCEEEc
Q 015457          217 SSGL-RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLD-----------ARQITDTGLAA-LTSLTGLTHLDL  282 (406)
Q Consensus       217 ~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~-----------~~~~~~~~~~~-~~~~~~L~~L~l  282 (406)
                      .... ..+..+++|+.|++. +.+.+..... ...+++|++|+++           .+.++...... ...+++|++|++
T Consensus       307 ~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          307 TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV  385 (592)
T ss_dssp             HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred             HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence            5544 446889999999998 4444443333 4568999999999           35677654444 456899999999


Q ss_pred             cCCCCChhHHHHhhc-CCCCCEEEcc----CCCCChH-----HHHhhhcCCCCCEEeccCCC-CCChhHHHHHH-cCCCc
Q 015457          283 FGARITDSGAAYLRN-FKNLRSLEIC----GGGLTDA-----GVKHIKDLSSLTLLNLSQNC-NLTDKTLELIS-GLTGL  350 (406)
Q Consensus       283 ~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~-~~~~L  350 (406)
                      +.+.+++.....+.. +++|++|+++    .+.+++.     ....+..+++|+.|+++.|. .+.......+. .+++|
T Consensus       386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L  465 (592)
T 3ogk_B          386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV  465 (592)
T ss_dssp             EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred             ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence            989999877777765 9999999996    5567652     34446779999999998763 26776666665 48999


Q ss_pred             cEEEeeCCccChhHHHh-cCCCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457          351 VSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  404 (406)
Q Consensus       351 ~~L~l~~~~~~~~~~~~-l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~  404 (406)
                      +.|++++|++++..... +..+++|++|++++|+++...+..+. ..+++|+.|.
T Consensus       466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~  519 (592)
T 3ogk_B          466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYLW  519 (592)
T ss_dssp             CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH-HHCSSCCEEE
T ss_pred             eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH-HhcCccCeeE
Confidence            99999999998866554 47899999999999999877777664 3688888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=100.00  E-value=5.8e-31  Score=249.71  Aligned_cols=389  Identities=23%  Similarity=0.260  Sum_probs=260.3

Q ss_pred             cCCCCCceeeccCCccCCHHHHHHHh-cCCCCcEeeccCcccccC-cccc-ccCCCCccEEeecCCCCcCcCccccc---
Q 015457            6 SGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVN-LKGLMKLESLNIKWCNCITDSDMKPL---   79 (406)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~---   79 (406)
                      .++++|++|++++|. ++...+..+. .+++|++|++++|..... .... ...+++|++|++++|. +++.....+   
T Consensus       102 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~  179 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF  179 (594)
T ss_dssp             HHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred             HhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH
Confidence            356677777777775 4555555554 577777777777643322 1222 3357777777777764 333222222   


Q ss_pred             -cCCCCccEEEeccCc--cChhHHHh-hhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccC--C----hhhhh
Q 015457           80 -SGLTNLKSLQISCSK--VTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL--S----DDGCE  149 (406)
Q Consensus        80 -~~~~~L~~L~l~~~~--~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~----~~~~~  149 (406)
                       ..+++|++|+++++.  +....... +.++++|++|++++|......+..+..+++|+++++..+..  .    ...+.
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence             256677777777664  43333322 35567777777777633333455666777777777654421  1    01223


Q ss_pred             hccCCCCccEEE-ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhH-hhhCCCCCCEEEcCCCcCCchhHHhh-cCC
Q 015457          150 KFSKIGSLKVLN-LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQVGSSGLRHL-SGL  226 (406)
Q Consensus       150 ~~~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~  226 (406)
                      .+..+++|+.+. +..... ..++..+..+++|++|++++|.+...... .+..+++|+.|++.++ +.......+ ..+
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence            456677777773 332221 23444445678999999999987655443 3567899999999987 333333333 358


Q ss_pred             CCCcEEecc---------CCCCChhHHHHhh-CCCCCcEEECCCCCCChHHHHHHh-cCCCCCEEEcc--C----CCCC-
Q 015457          227 TNLESINLS---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF--G----ARIT-  288 (406)
Q Consensus       227 ~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~-  288 (406)
                      ++|+.|++.         .+.+++.....+. .+++|+.|.+..+.++......+. .+++|+.|+++  +    +.++ 
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~  417 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL  417 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence            999999883         3466666555555 489999998888888887666665 58999999998  3    4555 


Q ss_pred             ---h-hHHHHhhcCCCCCEEEccCCCCChHHHHhhhc-CCCCCEEeccCCCCCChhHHHHH-HcCCCccEEEeeCCccCh
Q 015457          289 ---D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       289 ---~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~  362 (406)
                         + .....+..+++|++|++++ .+++.....+.. +++|+.|++++| .+++.....+ ..+++|+.|++++|++++
T Consensus       418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence               2 2233467789999999987 788877777765 899999999999 6777666665 679999999999999987


Q ss_pred             hHHHhc-CCCCCccEEEccCCCCChhhHHHHhhcCCCCcc
Q 015457          363 AGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV  401 (406)
Q Consensus       363 ~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~  401 (406)
                      .....+ ..+++|+.|++++|+++..+++.+. ..+|+++
T Consensus       496 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~  534 (594)
T 2p1m_B          496 KALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN  534 (594)
T ss_dssp             HHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred             HHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence            776544 5589999999999999888787774 3567663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.98  E-value=9e-33  Score=264.37  Aligned_cols=374  Identities=20%  Similarity=0.220  Sum_probs=250.4

Q ss_pred             CCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEE
Q 015457           10 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ   89 (406)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   89 (406)
                      ++++|+|++|. ++.+.+..|.++++|++|++++|......+.+|..+++|++|++++|. ++......+..+++|++|+
T Consensus        53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence            67888888876 566666678888888888888876544444567778888888888753 5555556677888888888


Q ss_pred             eccCccChhHHHhhhcCCCCCEEEecCCCCChh-hHHHHhcCCCCcEEEcCCccCChhhhhhccCCC-------------
Q 015457           90 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-------------  155 (406)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-------------  155 (406)
                      +++|.+.......+.++++|++|++++|.+... .|..+..+++|++|++++|.+....+..+..+.             
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            888887766656677888888888888877553 355667788888888888776554333222110             


Q ss_pred             --------------CccEEEecCCccch-hHHh-----------------------------------------------
Q 015457          156 --------------SLKVLNLGFNEITD-ECLV-----------------------------------------------  173 (406)
Q Consensus       156 --------------~L~~L~l~~~~~~~-~~~~-----------------------------------------------  173 (406)
                                    .++.+++.++.... ..+.                                               
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence                          11222222221110 0000                                               


Q ss_pred             --------------------------------hhcCCCCCCeEEccCCCCChhh-------------------hHhhhCC
Q 015457          174 --------------------------------HLKGLTNLESLNLDSCGIGDEG-------------------LVNLTGL  202 (406)
Q Consensus       174 --------------------------------~~~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~~  202 (406)
                                                      .+.....++.+++.++.+....                   ......+
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l  370 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  370 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred             hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence                                            0111223444444433221110                   0011235


Q ss_pred             CCCCEEEcCCCcCCchh--HHhh-----------------------cCCCCCcEEeccCCCCChh-HHHHhhCCCCCcEE
Q 015457          203 CNLKCLELSDTQVGSSG--LRHL-----------------------SGLTNLESINLSFTGISDG-SLRKLAGLSSLKSL  256 (406)
Q Consensus       203 ~~L~~l~l~~~~~~~~~--~~~l-----------------------~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L  256 (406)
                      ++|+.++++.+.+....  ....                       ..+++|+.+++..+..... ....+..+++++.+
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l  450 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  450 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            66777777766543211  1222                       2334455555544422221 12234567788888


Q ss_pred             ECCCCCCChHHHHHHhcCCCCCEEEccCCCCCh-hHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457          257 NLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  335 (406)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (406)
                      +++.|.+.......+..++.++.|++++|.... ..+..+..+++|++|++++|.+++..+..|..+++|++|++++| .
T Consensus       451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~  529 (635)
T 4g8a_A          451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-N  529 (635)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred             cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-c
Confidence            888888777656667788899999999987543 34556788999999999999999988888999999999999999 7


Q ss_pred             CChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCC-CCccEEEccCCCCCh
Q 015457          336 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA  386 (406)
Q Consensus       336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~  386 (406)
                      +....+..+..+++|+.|++++|+++...+..+..+ ++|++|++++|++.+
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            888777788899999999999999999888888877 689999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=4.5e-32  Score=256.16  Aligned_cols=316  Identities=19%  Similarity=0.160  Sum_probs=238.9

Q ss_pred             CCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEE
Q 015457           57 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL  136 (406)
Q Consensus        57 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  136 (406)
                      +.+++.++++++ .+...+...+..+++|++|+++++.+.+..+..+..+++|++|++++|.+....+..++.+++|++|
T Consensus        50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            567788888774 3454555556778888888888888877666677888888888888888877767777788888888


Q ss_pred             EcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCC
Q 015457          137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      ++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....   +..+++|+.++++++.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            88888877666666778888888888888887666777778888888888888776542   445778888888887765


Q ss_pred             chhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhh
Q 015457          217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR  296 (406)
Q Consensus       217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  296 (406)
                      .     +...++|+.|++++|.++....   ...++|+.|++++|.+++.  ..+..+++|+.|++++|.+....+..+.
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             c-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            4     2455678888888887765422   1246788888888888873  5667788888888888888877777788


Q ss_pred             cCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccE
Q 015457          297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS  376 (406)
Q Consensus       297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  376 (406)
                      .+++|+.|++++|.+.+. +..+..+|+|+.|++++| .+.. .+..+..+++|+.|++++|.++...   +..+++|+.
T Consensus       276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~  349 (597)
T 3oja_B          276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN  349 (597)
T ss_dssp             TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred             CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCC-CCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence            888888888888888775 444556788889999888 5553 3444567888889999988887643   567788889


Q ss_pred             EEccCCCCChhhHHHH
Q 015457          377 LTLESCKVTANDIKRL  392 (406)
Q Consensus       377 l~l~~~~~~~~~~~~~  392 (406)
                      |++++|++.......+
T Consensus       350 L~l~~N~~~~~~~~~~  365 (597)
T 3oja_B          350 LTLSHNDWDCNSLRAL  365 (597)
T ss_dssp             EECCSSCEEHHHHHHH
T ss_pred             EEeeCCCCCChhHHHH
Confidence            9999998887665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-31  Score=239.96  Aligned_cols=316  Identities=17%  Similarity=0.168  Sum_probs=200.7

Q ss_pred             CCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEE
Q 015457           33 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        33 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  112 (406)
                      +++++.++++++.........+..+++|++|+++++. +.......+..+++|++|+++++.+....+..+.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            4556666665554222222224555666666665532 333344455566666666666666655555555666666666


Q ss_pred             EecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCC
Q 015457          113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG  192 (406)
Q Consensus       113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (406)
                      ++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...   .+..+++|+.+++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            6666666554333345666666666666666655555566666666666666665532   2345566677777666554


Q ss_pred             hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh
Q 015457          193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  272 (406)
Q Consensus       193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  272 (406)
                      ..     ...+.|+.++++++.+.....   ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+.
T Consensus       200 ~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 TL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            22     233467777777776654422   2346777777777777654  3566778888888888877776566677


Q ss_pred             cCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccE
Q 015457          273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS  352 (406)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  352 (406)
                      .+++|++|++++|.++.. +..+..+++|++|++++|.+... +..+..+++|+.|++++| .+....   +..+++|+.
T Consensus       270 ~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~  343 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKN  343 (390)
T ss_dssp             TCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSE
T ss_pred             ccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCC-ccceeC---chhhccCCE
Confidence            788888888888877763 22335678888888888888765 445677888899999888 555442   567788999


Q ss_pred             EEeeCCccChhHHHhc
Q 015457          353 LNVSNSRITSAGLRHL  368 (406)
Q Consensus       353 L~l~~~~~~~~~~~~l  368 (406)
                      |++++|++.......+
T Consensus       344 L~l~~N~~~~~~~~~~  359 (390)
T 3o6n_A          344 LTLSHNDWDCNSLRAL  359 (390)
T ss_dssp             EECCSSCEEHHHHHHH
T ss_pred             EEcCCCCccchhHHHH
Confidence            9999999877655544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=2e-30  Score=245.98  Aligned_cols=394  Identities=21%  Similarity=0.234  Sum_probs=276.5

Q ss_pred             ccCCCCCceeeccCCccCCHH--------------HHHHHhcCCCCcEeeccCcccccCcccccc-CCCCccEEeecCCC
Q 015457            5 LSGLSNLTSLSFRRNNAITAQ--------------GMKAFAGLINLVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCN   69 (406)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~   69 (406)
                      +.++++|++|+++++..+...              .......+++|++|++++|......+..+. .+++|++|++++|.
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            456788888888887533211              123345788899999888764433344444 58889999998876


Q ss_pred             CcCcCccccc-cCCCCccEEEeccCccChhHHHhh----hcCCCCCEEEecCCC--CChhh-HHHHhcCCCCcEEEcCCc
Q 015457           70 CITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYL----KGLQKLTLLNLEGCP--VTAAC-LDSLSALGSLFYLNLNRC  141 (406)
Q Consensus        70 ~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~~~-~~~~~~l~~L~~L~l~~~  141 (406)
                      .++......+ ..+++|++|++++|.+.+.....+    ..+++|+.|+++++.  +.... ...+..+++|++|++.+|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            5554333333 378889999988887655443333    356788889888875  33222 222345788999998887


Q ss_pred             cCChhhhhhccCCCCccEEEecCCc-------cchhHHhhhcCCCCCCeE-EccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457          142 QLSDDGCEKFSKIGSLKVLNLGFNE-------ITDECLVHLKGLTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDT  213 (406)
Q Consensus       142 ~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  213 (406)
                      ......+..+..+++|+.|+++.+.       +. ..+..+..+++|+.+ .+..... ...+..+..+++|+.|+++++
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence            4333355566777888888865543       22 334466788888888 3333211 222333346789999999999


Q ss_pred             cCCchhHH-hhcCCCCCcEEeccCCCCChhHHHHhh-CCCCCcEEEC---------CCCCCChHHHHHHh-cCCCCCEEE
Q 015457          214 QVGSSGLR-HLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL---------DARQITDTGLAALT-SLTGLTHLD  281 (406)
Q Consensus       214 ~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l---------~~~~~~~~~~~~~~-~~~~L~~L~  281 (406)
                      .+...... .+..+++|+.|++.++ +++.....+. .+++|++|++         ..+.++......+. .+++|+.|.
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            87654433 3568899999999988 5444444443 5899999998         34567776555554 589999999


Q ss_pred             ccCCCCChhHHHHhh-cCCCCCEEEcc--C----CCCC----hHH-HHhhhcCCCCCEEeccCCCCCChhHHHHHHc-CC
Q 015457          282 LFGARITDSGAAYLR-NFKNLRSLEIC--G----GGLT----DAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LT  348 (406)
Q Consensus       282 l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~----~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~  348 (406)
                      +..+.+++.....+. .+++|++|+++  +    +.++    +.+ ...+..+++|+.|++++  .+.+.....+.. ++
T Consensus       379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~  456 (594)
T 2p1m_B          379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAK  456 (594)
T ss_dssp             EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCT
T ss_pred             HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhch
Confidence            988999887766664 58999999999  4    4565    222 33457789999999977  577777777765 89


Q ss_pred             CccEEEeeCCccChhHHHhc-CCCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457          349 GLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  404 (406)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~  404 (406)
                      +|+.|++++|.+++..+..+ ..+++|++|++++|+++...+..+. ..+++|+.|.
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~  512 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-SKLETMRSLW  512 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-GGGGGSSEEE
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-HhCCCCCEEe
Confidence            99999999999988777776 6799999999999999777666554 4678887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=9.3e-31  Score=247.19  Aligned_cols=312  Identities=16%  Similarity=0.156  Sum_probs=170.6

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  113 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  113 (406)
                      .+++.++++++......+..+..+++|++|++++|. +....+..+..+++|++|++++|.+...++..+.++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            455555555544222222224445555555555532 3333334455555555555555555554444455555555555


Q ss_pred             ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457          114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  193 (406)
Q Consensus       114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  193 (406)
                      +++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...   .+..+++|+.+++++|.+..
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence            555555544333345555555555555555554444555555556666555555432   12344555666665554432


Q ss_pred             hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457          194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  273 (406)
Q Consensus       194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  273 (406)
                      .     ...++|+.|+++++.+......   ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+..+..
T Consensus       207 l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 L-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             E-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             c-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            1     2234566666666555433211   124566666666666542  34556666666666666666655555666


Q ss_pred             CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEE
Q 015457          274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL  353 (406)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  353 (406)
                      +++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++|+.|++++| .+....   +..+++|+.|
T Consensus       277 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~L  350 (597)
T 3oja_B          277 MQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNL  350 (597)
T ss_dssp             CSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEE
T ss_pred             ccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCEE
Confidence            66677777766666653 22334566777777777766644 444566677777777777 444332   4556677777


Q ss_pred             EeeCCccChhHH
Q 015457          354 NVSNSRITSAGL  365 (406)
Q Consensus       354 ~l~~~~~~~~~~  365 (406)
                      ++++|++.....
T Consensus       351 ~l~~N~~~~~~~  362 (597)
T 3oja_B          351 TLSHNDWDCNSL  362 (597)
T ss_dssp             ECCSSCEEHHHH
T ss_pred             EeeCCCCCChhH
Confidence            777777665443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=5e-30  Score=233.32  Aligned_cols=262  Identities=21%  Similarity=0.188  Sum_probs=161.9

Q ss_pred             cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457            4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT   83 (406)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   83 (406)
                      .+.++++|++|+++++. +.+. + .+..+++|++|++++|.... .  .+..+++|++|++++|. ++..   .+..++
T Consensus        37 ~~~~l~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~--~~~~l~~L~~L~Ls~N~-l~~~---~~~~l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNNITT-L--DLSQNTNLTYLACDSNK-LTNL---DVTPLT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSCCSC-C--CCTTCTTCSEEECCSSC-CSCC---CCTTCT
T ss_pred             ChhHcCCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCcCCe-E--ccccCCCCCEEECcCCC-Ccee---ecCCCC
Confidence            45567777777777775 3333 2 46777777777777776332 2  26677777777777754 3332   266777


Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      +|++|++++|.+.+..   +..+++|++|++++|.+.+.   .++.+++|+++++++|......  .+..+++|+.|+++
T Consensus       107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS  178 (457)
T ss_dssp             TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence            7777777777766532   66777777777777777664   2566777777777777433222  35566777777777


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS  243 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  243 (406)
                      +|.+.+ .+  +..+++|+.|++++|.++..   .+..+++|+.|++++|.+...+   ++.+++|+.|++++|.++...
T Consensus       179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC
T ss_pred             CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC
Confidence            777664 22  56667777777777766544   2556677777777777766532   566677777777777666532


Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  311 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  311 (406)
                         +..+++|+.|+++++              +|+.+++++|......+  +..+++|+.|++++|..
T Consensus       250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred             ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence               344566666665543              33444444444332221  23455566666665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=9.1e-30  Score=243.59  Aligned_cols=357  Identities=20%  Similarity=0.224  Sum_probs=256.3

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG   81 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~   81 (406)
                      |..|.++++|++|++++|. +..+.+.+|.++++|++|++++|......+..|..+++|++|++++|. ++......++.
T Consensus        69 ~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~  146 (635)
T 4g8a_A           69 SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGH  146 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTT
T ss_pred             HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhc
Confidence            3568999999999999997 667777789999999999999998554444568999999999999864 56666667889


Q ss_pred             CCCccEEEeccCccChh-HHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC----cEEEcCCccCCh-----------
Q 015457           82 LTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSD-----------  145 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~-----------  145 (406)
                      +++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+.++    ..++++.+.+..           
T Consensus       147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~  226 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL  226 (635)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred             CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence            99999999999988654 34667889999999999998876655444322111    122221111100           


Q ss_pred             ------------hh------------------------------------------------------------------
Q 015457          146 ------------DG------------------------------------------------------------------  147 (406)
Q Consensus       146 ------------~~------------------------------------------------------------------  147 (406)
                                  ..                                                                  
T Consensus       227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~  306 (635)
T 4g8a_A          227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT  306 (635)
T ss_dssp             EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred             hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence                        00                                                                  


Q ss_pred             --------------hhhccCCCCccEEEecCCccchhHH-------------------hhhcCCCCCCeEEccCCCCChh
Q 015457          148 --------------CEKFSKIGSLKVLNLGFNEITDECL-------------------VHLKGLTNLESLNLDSCGIGDE  194 (406)
Q Consensus       148 --------------~~~~~~l~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~  194 (406)
                                    ...+.....++.|++.++.+....+                   .....+++|+.++++.+.+...
T Consensus       307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~  386 (635)
T 4g8a_A          307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK  386 (635)
T ss_dssp             TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred             ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence                          0001112344555555443321111                   0112457788888887765321


Q ss_pred             --hhHhhhC-----------------------CCCCCEEEcCCCcCCch-hHHhhcCCCCCcEEeccCCCCChhHHHHhh
Q 015457          195 --GLVNLTG-----------------------LCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLA  248 (406)
Q Consensus       195 --~~~~~~~-----------------------~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  248 (406)
                        .+.....                       ++.|+.+++..+..... ....+..+++++.++++.+.+....+..+.
T Consensus       387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~  466 (635)
T 4g8a_A          387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  466 (635)
T ss_dssp             EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence              1222233                       34455555544432221 223456788999999999988777677778


Q ss_pred             CCCCCcEEECCCCCCCh-HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCE
Q 015457          249 GLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  327 (406)
Q Consensus       249 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  327 (406)
                      .++.++.|++++|.... ..+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence            89999999999987544 33456778899999999999999888888999999999999999999987778899999999


Q ss_pred             EeccCCCCCChhHHHHHHcC-CCccEEEeeCCccC
Q 015457          328 LNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRIT  361 (406)
Q Consensus       328 L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~  361 (406)
                      |++++| .+....+..+..+ ++|+.|++++|++.
T Consensus       547 L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          547 LDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             EECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             EECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999 7888878888877 68999999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.9e-29  Score=219.89  Aligned_cols=289  Identities=20%  Similarity=0.197  Sum_probs=155.2

Q ss_pred             CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEc
Q 015457           59 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  138 (406)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  138 (406)
                      +++.++++++. ++..+ ..  -.+++++|+++++.+.+.....+.++++|++|++++|.+....|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~-l~~lp-~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVP-KD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSC-CCSCC-CS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCC-ccccC-cc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            56777776643 22221 11  1256777777777776655556677777777777777776665666667777777777


Q ss_pred             CCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh--hhhHhhhCCCCCCEEEcCCCcCC
Q 015457          139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      ++|.+... +..+  .++|+.|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|+.|+++++.+.
T Consensus       108 s~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            77666532 2222  1566666666666655555555666666666666665542  22334445555555555555543


Q ss_pred             chhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhh
Q 015457          217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR  296 (406)
Q Consensus       217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  296 (406)
                      .....   .                        .++|++|++++|.++...+..+..+++|+.|++++|.++...+..+.
T Consensus       185 ~l~~~---~------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          185 TIPQG---L------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             SCCSS---C------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cCCcc---c------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            32110   1                        13444444444444443333444445555555555554444333444


Q ss_pred             cCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHH------cCCCccEEEeeCCccCh--hHHHhc
Q 015457          297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS------GLTGLVSLNVSNSRITS--AGLRHL  368 (406)
Q Consensus       297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~------~~~~L~~L~l~~~~~~~--~~~~~l  368 (406)
                      .+++|++|++++|.+... +..+..+++|++|++++| .+.......++      ..+.++.+++.+|++..  ..+..+
T Consensus       238 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f  315 (330)
T 1xku_A          238 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  315 (330)
T ss_dssp             GSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence            455555555555555432 333444555555555555 44443333332      23566777777777643  334556


Q ss_pred             CCCCCccEEEccCCC
Q 015457          369 KPLKNLRSLTLESCK  383 (406)
Q Consensus       369 ~~~~~L~~l~l~~~~  383 (406)
                      ..+++++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            667777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=9e-29  Score=216.80  Aligned_cols=288  Identities=17%  Similarity=0.193  Sum_probs=212.6

Q ss_pred             CCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEe
Q 015457           35 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  114 (406)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (406)
                      +++.++++++. ....+..+  .+++++|+++++. ++......+..+++|++|++++|.+....+..+.++++|++|++
T Consensus        32 ~l~~l~~~~~~-l~~lp~~~--~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVPKDL--PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSC-CCSCCCSC--CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCC-ccccCccC--CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            78999998765 33344333  3789999999864 66666667889999999999999998877788999999999999


Q ss_pred             cCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch--hHHhhhcCCCCCCeEEccCCCCC
Q 015457          115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG  192 (406)
Q Consensus       115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~  192 (406)
                      ++|.+... |..+  .++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.+.
T Consensus       108 s~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99988764 3332  3799999999999998778889999999999999998863  45667888999999999999886


Q ss_pred             hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh
Q 015457          193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  272 (406)
Q Consensus       193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  272 (406)
                      .... .+  .++|+.|+++++.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++.. +..+.
T Consensus       185 ~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~  260 (330)
T 1xku_A          185 TIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLA  260 (330)
T ss_dssp             SCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTT
T ss_pred             cCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-Chhhc
Confidence            5432 22  37899999999998877777788888999999988888776555667777888888888777753 23455


Q ss_pred             cCCCCCEEEccCCCCChhHHHHhhc------CCCCCEEEccCCCCCh--HHHHhhhcCCCCCEEeccCC
Q 015457          273 SLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~  333 (406)
                      .+++|++|++++|.++......+..      .+.++.+++.+|.+..  ..+..+..+++++.+++++|
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            6677777777777776544433321      2455555555555443  12233444455555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=9.6e-29  Score=224.89  Aligned_cols=281  Identities=21%  Similarity=0.164  Sum_probs=201.6

Q ss_pred             cccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCC
Q 015457            4 NLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT   83 (406)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   83 (406)
                      .+.++++|++|++++|. +++..   +..+++|++|++++|.... .  .+..+++|++|++++|. ++..   .+..++
T Consensus        59 ~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~-~--~~~~l~~L~~L~L~~N~-l~~l---~~~~l~  127 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTN-L--DVTPLTKLTYLNCDTNK-LTKL---DVSQNP  127 (457)
T ss_dssp             TGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSC-C--CCTTCTTCCEEECCSSC-CSCC---CCTTCT
T ss_pred             hhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCce-e--ecCCCCcCCEEECCCCc-CCee---cCCCCC
Confidence            57889999999999997 44442   7899999999999987443 2  38889999999999964 4433   278999


Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      +|++|++++|.+.+.   .+..+++|+.|++++|...+..  .+..+++|++|++++|.+....   +..+++|+.|+++
T Consensus       128 ~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~  199 (457)
T 3bz5_A          128 LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCD  199 (457)
T ss_dssp             TCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECC
T ss_pred             cCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECc
Confidence            999999999998874   3788999999999999544433  4678999999999999988742   7788999999999


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh--
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--  241 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--  241 (406)
                      +|.+.+.   .+..+++|+.|++++|.++.. +  +..+++|+.|++++|.+....   ++.+++|+.|+++++.+..  
T Consensus       200 ~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          200 TNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             SSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCC
T ss_pred             CCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEE
Confidence            9998854   377899999999999998764 2  778999999999999987754   4556777776665543321  


Q ss_pred             --------hHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457          242 --------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  313 (406)
Q Consensus       242 --------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  313 (406)
                              ..+  ++.+++|+.|++++|...+..+   ...++|+.++             +..+++|++|++++|.+++
T Consensus       271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD---CQAAGITELD-------------LSQNPKLVYLYLNNTELTE  332 (457)
T ss_dssp             CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCC-------------CTTCTTCCEEECTTCCCSC
T ss_pred             CCCCccCCccc--ccccccCCEEECCCCcccceec---cCCCcceEec-------------hhhcccCCEEECCCCcccc
Confidence                    111  2344556666665554322111   0112222222             2233556666666666655


Q ss_pred             HHHHhhhcCCCCCEEeccCC
Q 015457          314 AGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~  333 (406)
                      .   .+..+++|+.|++++|
T Consensus       333 l---~l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          333 L---DVSHNTKLKSLSCVNA  349 (457)
T ss_dssp             C---CCTTCTTCSEEECCSS
T ss_pred             c---ccccCCcCcEEECCCC
Confidence            3   2555666666666666

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.4e-29  Score=222.13  Aligned_cols=288  Identities=19%  Similarity=0.210  Sum_probs=152.7

Q ss_pred             CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEc
Q 015457           59 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  138 (406)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  138 (406)
                      +++.++++++. ++..+ ..+  .+++++|+++++.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~-l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVP-KEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSC-CSSCC-SCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCC-ccccC-CCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            56777776643 22221 111  356777777777766555556667777777777777766665666666777777777


Q ss_pred             CCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh--hhhHhhhCCCCCCEEEcCCCcCC
Q 015457          139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      ++|.+..... .+.  ++|+.|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+ +|+.++++++.+.
T Consensus       110 ~~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEIPP-NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSCCS-SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCccCc-ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            7766653222 221  566666666666654444445566666666666665532  222233333 4555555555443


Q ss_pred             chhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhh
Q 015457          217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR  296 (406)
Q Consensus       217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  296 (406)
                      .... .+                          .++|++|++++|.++......+..+++|+.|++++|.++...+..+.
T Consensus       186 ~l~~-~~--------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          186 GIPK-DL--------------------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             SCCS-SS--------------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             ccCc-cc--------------------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            3211 00                          13444444444444443333344445555555555555444444444


Q ss_pred             cCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHc------CCCccEEEeeCCccC--hhHHHhc
Q 015457          297 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHL  368 (406)
Q Consensus       297 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~--~~~~~~l  368 (406)
                      .+++|++|++++|.+... +..+..+++|+.|++++| .+.......++.      .+.|+.|++.+|++.  ...+..+
T Consensus       239 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~  316 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF  316 (332)
T ss_dssp             GCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence            555555555555555432 333455555555555555 444433333322      355667777777665  3444556


Q ss_pred             CCCCCccEEEccCCC
Q 015457          369 KPLKNLRSLTLESCK  383 (406)
Q Consensus       369 ~~~~~L~~l~l~~~~  383 (406)
                      ..+++|+.+++++|+
T Consensus       317 ~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          317 RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTBCCSTTEEC----
T ss_pred             cccchhhhhhccccc
Confidence            667777777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=2.7e-28  Score=213.86  Aligned_cols=287  Identities=16%  Similarity=0.184  Sum_probs=211.8

Q ss_pred             CCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEe
Q 015457           35 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  114 (406)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (406)
                      +++.++++++.. ...+..+  .++|++|++++|. +....+..+..+++|++|++++|.+....+..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCc-cccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            689999988763 3344434  3789999999864 55555667889999999999999998877788999999999999


Q ss_pred             cCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch--hHHhhhcCCCCCCeEEccCCCCC
Q 015457          115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG  192 (406)
Q Consensus       115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~  192 (406)
                      ++|.+... |..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+ +|+.|++++|.+.
T Consensus       110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            99988764 33322  799999999999987777778999999999999998863  445666666 8999999999876


Q ss_pred             hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh
Q 015457          193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  272 (406)
Q Consensus       193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  272 (406)
                      .... .+  .++|+.|+++++.+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++..+ ..+.
T Consensus       186 ~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~  261 (332)
T 2ft3_A          186 GIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLP  261 (332)
T ss_dssp             SCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTGG
T ss_pred             ccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhhh
Confidence            5322 22  368999999999888776677788888999999888887766656777788888888888777542 3456


Q ss_pred             cCCCCCEEEccCCCCChhHHHHhhc------CCCCCEEEccCCCCC--hHHHHhhhcCCCCCEEeccCC
Q 015457          273 SLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      .+++|+.|++++|.++......+..      .++|+.|++.+|.+.  ...+..+..+++|+.+++++|
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            6777777777777776654444332      345666666666555  233344555566666666555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=3.6e-28  Score=220.95  Aligned_cols=267  Identities=18%  Similarity=0.155  Sum_probs=128.7

Q ss_pred             CCccEEEeccCccChhHHHhhhcC-CCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN  161 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  161 (406)
                      ++|++|++++|.+.+..     .. ++|++|++++|.+.+. | .++.+++|++|++++|.+.. .+..   .++|++|+
T Consensus       111 ~~L~~L~l~~n~l~~l~-----~~~~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~  179 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIA  179 (454)
T ss_dssp             TTCCEEECCSSCCSCCC-----SCCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             CCCcEEECCCCccCccc-----CCCCCCCEEECcCCCCCCC-c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEE
Confidence            55666666665554311     12 4667777776666653 3 46666667777776666553 2211   23566666


Q ss_pred             ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh
Q 015457          162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  241 (406)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  241 (406)
                      +++|.+.+ .| .+..+++|+.|++++|.+.....    ..++|+.|++++|.+....  .++.+++|+.|++++|.++.
T Consensus       180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS
T ss_pred             CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc
Confidence            66666553 23 35566666666666665543111    1235556666555554322  24455555555555555443


Q ss_pred             hHHHHhhCCCCCcEEECCCCCCChHHHHH---------------H-hcCCCCCEEEccCCCCChhHHHHhhcC-CCCCEE
Q 015457          242 GSLRKLAGLSSLKSLNLDARQITDTGLAA---------------L-TSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSL  304 (406)
Q Consensus       242 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L  304 (406)
                      ..    ...++|+.|++++|.+.+.+...               + .-.++|+.|++++|.++..     ... ++|++|
T Consensus       252 l~----~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L  322 (454)
T 1jl5_A          252 LP----DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEEL  322 (454)
T ss_dssp             CC----SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCEE
T ss_pred             cc----ccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCEE
Confidence            11    01244555555554444321000               0 0113455555555544431     122 466666


Q ss_pred             EccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh--hHHHhcCCC-----------
Q 015457          305 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPL-----------  371 (406)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~-----------  371 (406)
                      ++++|.+.+. +.   .+++|+.|++++| .+.....    .+++|+.|++++|++++  ..+..+..+           
T Consensus       323 ~Ls~N~l~~l-p~---~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~  393 (454)
T 1jl5_A          323 NVSNNKLIEL-PA---LPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE  393 (454)
T ss_dssp             ECCSSCCSCC-CC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred             ECCCCccccc-cc---cCCcCCEEECCCC-ccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence            6666666542 21   2467777777777 4553222    35677777777777665  333344333           


Q ss_pred             --CCccEEEccCCCCCh
Q 015457          372 --KNLRSLTLESCKVTA  386 (406)
Q Consensus       372 --~~L~~l~l~~~~~~~  386 (406)
                        ++|+.|++++|++..
T Consensus       394 ~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          394 LPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -----------------
T ss_pred             ccCcCCEEECCCCcCCc
Confidence              667777777777664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=2.7e-27  Score=215.19  Aligned_cols=338  Identities=17%  Similarity=0.106  Sum_probs=222.5

Q ss_pred             cccccCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCc-------------cEEeecCC
Q 015457            2 TENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL-------------ESLNIKWC   68 (406)
Q Consensus         2 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~   68 (406)
                      |+.+ +.++|++|+++++. + +..|+.++++++|++|++++|......+..++.+++|             ++|++++|
T Consensus         5 p~~~-~~~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             cccc-ccccchhhhcccCc-h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence            4444 46899999999987 4 4567789999999999999988665667777777765             99999986


Q ss_pred             CCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhh
Q 015457           69 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC  148 (406)
Q Consensus        69 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  148 (406)
                      . ++....    ..++|++|+++++.+.+.+    ..+++|++|++++|.+.+. +.   ..++|++|++++|.+.. .+
T Consensus        82 ~-l~~lp~----~~~~L~~L~l~~n~l~~lp----~~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp  147 (454)
T 1jl5_A           82 G-LSSLPE----LPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP  147 (454)
T ss_dssp             C-CSCCCS----CCTTCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC
T ss_pred             c-cccCCC----CcCCCCEEEccCCcCCccc----cccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc
Confidence            5 333221    2489999999999888632    2347899999999988763 21   12699999999999886 44


Q ss_pred             hhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCC
Q 015457          149 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN  228 (406)
Q Consensus       149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~  228 (406)
                       .++.+++|++|++++|.+.+ +|..   .++|++|++++|.+... + .+..+++|+.|++++|.+....    ...++
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~  216 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLS  216 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTT
T ss_pred             -ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCc
Confidence             58899999999999998874 3432   36999999999988764 3 5788999999999999876532    12368


Q ss_pred             CcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccC
Q 015457          229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  308 (406)
Q Consensus       229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  308 (406)
                      |+.|++++|.+... + .+..+++|+.|++++|.++..+.    .+++|+.|++++|.++...    ..+++|++|++++
T Consensus       217 L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~  286 (454)
T 1jl5_A          217 LESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSE  286 (454)
T ss_dssp             CCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred             ccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccC----cccCcCCEEECcC
Confidence            99999999988753 3 47789999999999998887431    3478888888888876522    1235677777776


Q ss_pred             CCCChHH--HHh-------------hhcC-CCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCC
Q 015457          309 GGLTDAG--VKH-------------IKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK  372 (406)
Q Consensus       309 ~~~~~~~--~~~-------------~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~  372 (406)
                      |.+++..  +..             +..+ ++|+.|++++| .+.....    .+++|+.|++++|.++....    .++
T Consensus       287 N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~  357 (454)
T 1jl5_A          287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA----LPPRLERLIASFNHLAEVPE----LPQ  357 (454)
T ss_dssp             SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCCC----CCT
T ss_pred             CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc----cCCcCCEEECCCCccccccc----hhh
Confidence            6665521  000             1112 36666666666 4443211    24677777777777664322    357


Q ss_pred             CccEEEccCCCCCh
Q 015457          373 NLRSLTLESCKVTA  386 (406)
Q Consensus       373 ~L~~l~l~~~~~~~  386 (406)
                      +|++|++++|++..
T Consensus       358 ~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          358 NLKQLHVEYNPLRE  371 (454)
T ss_dssp             TCCEEECCSSCCSS
T ss_pred             hccEEECCCCCCCc
Confidence            78888888887765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=5.9e-29  Score=215.64  Aligned_cols=228  Identities=18%  Similarity=0.197  Sum_probs=114.7

Q ss_pred             CCccEEEeccCccCh--hHHHhhhcCCCCCEEEecC-CCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccE
Q 015457           83 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV  159 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  159 (406)
                      .++++|+++++.+.+  ..+..+.++++|++|++++ +.+.+..|..+..+++|++|++++|.+....+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            345555555555554  3344555555566666653 4444444555555566666666655555445555555566666


Q ss_pred             EEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCC-CCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCC
Q 015457          160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  238 (406)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  238 (406)
                      |++++|.+.+..|..+..+++|++|++++|.+....+..+..++ .|+.|++++|.+....+..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            66666555544555555556666666666555444444455554 555555555554433333444433 5555555554


Q ss_pred             CChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCC
Q 015457          239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT  312 (406)
Q Consensus       239 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  312 (406)
                      ++...+..+..+++|+.|++++|.+...... +..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            4433333444445555555555444432111 233444444444444444333333444444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=2.1e-28  Score=212.16  Aligned_cols=249  Identities=17%  Similarity=0.145  Sum_probs=193.4

Q ss_pred             CCccEEeecCCCCcCc--CccccccCCCCccEEEecc-CccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCc
Q 015457           58 MKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF  134 (406)
Q Consensus        58 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  134 (406)
                      .++++|+++++. +.+  ..+..+..+++|++|++++ +.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            578888888754 343  4456777888888888884 777666666778888888888888888766677788888888


Q ss_pred             EEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCC-CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457          135 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  213 (406)
Q Consensus       135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  213 (406)
                      +|++++|.+....+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+....+..+..+. |+.|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            888888887766777788888888888888888766777777776 888888888877666666666666 888888888


Q ss_pred             cCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHH
Q 015457          214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  293 (406)
Q Consensus       214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  293 (406)
                      .+....+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            87766677778888888888888877654433 66778899999998888765566778888999999999888765444


Q ss_pred             HhhcCCCCCEEEccCCC
Q 015457          294 YLRNFKNLRSLEICGGG  310 (406)
Q Consensus       294 ~~~~~~~L~~L~l~~~~  310 (406)
                      . ..+++|+.+++.+|.
T Consensus       287 ~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             S-TTGGGSCGGGTCSSS
T ss_pred             C-ccccccChHHhcCCC
Confidence            3 667888888888876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.4e-27  Score=209.68  Aligned_cols=282  Identities=17%  Similarity=0.180  Sum_probs=167.1

Q ss_pred             CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457           81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  160 (406)
Q Consensus        81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  160 (406)
                      .|+.....+.+++.++..+. .+  .++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            34555556666666654332 12  2478888888887777655567777888888888877776666667777788888


Q ss_pred             EecCCccchhHHhhhcCCCCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCC-cCCchhHHhhcCCCCCcEEeccCCC
Q 015457          161 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG  238 (406)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~  238 (406)
                      ++++|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|+++++ .+.......++.+++|+.|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            888777775555556777778888887777654433 34566777777777776 3444444556666777777777776


Q ss_pred             CChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHH---hhcCCCCCEEEccCCCCChHH
Q 015457          239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY---LRNFKNLRSLEICGGGLTDAG  315 (406)
Q Consensus       239 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~  315 (406)
                      ++...+..+..+++|++|++++|.+...+...+..+++|+.|++++|.++......   ....+.++.+++.++.+.+..
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            66655555666666666666666666554444445666666666666655422111   122344445555544444321


Q ss_pred             HHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          316 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ..                     ..+..+..+++|+.|++++|.++......+..+++|++|++++|++..
T Consensus       266 l~---------------------~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          266 LF---------------------QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HH---------------------HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hh---------------------hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            11                     122334445555555555555544333333445555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.5e-27  Score=206.50  Aligned_cols=275  Identities=21%  Similarity=0.144  Sum_probs=219.7

Q ss_pred             CCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcE
Q 015457           56 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY  135 (406)
Q Consensus        56 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  135 (406)
                      .|+.....+.+++ .++..+. .  -.++|++|+++++.+.......+.++++|++|++++|.+....+..+..+++|++
T Consensus        29 ~C~~~~~c~~~~~-~l~~iP~-~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSG-SLNSIPS-G--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCST-TCSSCCT-T--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCC-Ccccccc-c--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3555555666653 3333322 2  2368999999999999877778899999999999999999887788999999999


Q ss_pred             EEcCCccCChhhhhhccCCCCccEEEecCCccchhHH-hhhcCCCCCCeEEccCC-CCChhhhHhhhCCCCCCEEEcCCC
Q 015457          136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT  213 (406)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~  213 (406)
                      |++++|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|++++| .+....+..+..+++|+.|+++++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            9999999987766778999999999999999884333 36788999999999998 466666677888999999999999


Q ss_pred             cCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH---HHHhcCCCCCEEEccCCCCChh
Q 015457          214 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDS  290 (406)
Q Consensus       214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~  290 (406)
                      .+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++....   ........++.+++.++.+.+.
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            9988777888999999999999999887666566678999999999998887432   2233567899999999998863


Q ss_pred             ----HHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCC
Q 015457          291 ----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  334 (406)
Q Consensus       291 ----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (406)
                          .+..+..+++|++|++++|.++......+..+++|++|++++|+
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence                34556778888888888888876544445677888888888884

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=6e-26  Score=194.54  Aligned_cols=203  Identities=24%  Similarity=0.307  Sum_probs=101.7

Q ss_pred             CCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc-cchhHHhhhcCCCCCCeEE
Q 015457          107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN  185 (406)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~  185 (406)
                      ++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            456666666666655544455556666666666665555445555555556666665554 4433344455555555555


Q ss_pred             ccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCCh
Q 015457          186 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD  265 (406)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  265 (406)
                      +++|.+....+..+..+++|+.|+++++.+.......++                        .+++|++|++++|.++.
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------------DLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc------------------------cCCCccEEECCCCcccc
Confidence            555554443333344444444444444444333333333                        34444444444444443


Q ss_pred             HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      .+...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            33233344444555555555444443444444555555555555555444444445555555555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.6e-25  Score=204.57  Aligned_cols=246  Identities=23%  Similarity=0.266  Sum_probs=164.4

Q ss_pred             CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457          109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  188 (406)
Q Consensus       109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (406)
                      ...++.++..+... |..+  .+++++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            35566666665553 3322  25788888888888777777778888888888888877766667777788888888888


Q ss_pred             CCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457          189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG  267 (406)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (406)
                      |.+....+..+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+... 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            8777666666777778888888887777666666777777777777763 44443334456667777777777766653 


Q ss_pred             HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457          268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  347 (406)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  347 (406)
                       ..+..+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+.......+..+
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL  289 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred             -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence             23455666666666666666655555666666666666666666655555566666666666666 5555444455556


Q ss_pred             CCccEEEeeCCcc
Q 015457          348 TGLVSLNVSNSRI  360 (406)
Q Consensus       348 ~~L~~L~l~~~~~  360 (406)
                      ++|+.|++++|++
T Consensus       290 ~~L~~L~L~~Np~  302 (452)
T 3zyi_A          290 RYLVELHLHHNPW  302 (452)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEccCCCc
Confidence            6666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.9e-25  Score=203.36  Aligned_cols=246  Identities=23%  Similarity=0.245  Sum_probs=181.2

Q ss_pred             CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457          109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  188 (406)
Q Consensus       109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (406)
                      ...++.++..+... |..+  .++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            45677766666654 3322  36788899988888877777888888899999988888766667788888888888888


Q ss_pred             CCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457          189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG  267 (406)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (406)
                      |.++......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++..+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            8887666667778888888888888887766667778888888888774 444444445667788888888888777642


Q ss_pred             HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457          268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  347 (406)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  347 (406)
                        .+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+.......+..+
T Consensus       202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  278 (440)
T 3zyj_A          202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL  278 (440)
T ss_dssp             --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred             --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence              3556677777777777777666666777777777777777777766666667777777777777 5666555556667


Q ss_pred             CCccEEEeeCCcc
Q 015457          348 TGLVSLNVSNSRI  360 (406)
Q Consensus       348 ~~L~~L~l~~~~~  360 (406)
                      ++|+.|++++|++
T Consensus       279 ~~L~~L~L~~Np~  291 (440)
T 3zyj_A          279 HHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEcCCCCc
Confidence            7777777777764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=4.9e-26  Score=197.88  Aligned_cols=259  Identities=17%  Similarity=0.187  Sum_probs=177.5

Q ss_pred             cEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCC
Q 015457           86 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN  165 (406)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (406)
                      +..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+  +..+++|++|++++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            334444454444444444555667777777777766666667777777777777776654332  666777777777777


Q ss_pred             ccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHH
Q 015457          166 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR  245 (406)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  245 (406)
                      .+.+     +...++|+.|++++|.+....+.   .+++|+.|++++|.+.......++.+++|+.|++++|.++...+.
T Consensus        91 ~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           91 YVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             EEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             cccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            6653     22346777777777776554332   356677777777777766555666677788888887777765554


Q ss_pred             Hhh-CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCC
Q 015457          246 KLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS  324 (406)
Q Consensus       246 ~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  324 (406)
                      .+. .+++|++|++++|.++...  ....+++|++|++++|.++...+. +..+++|++|++++|.++.. +..+..+++
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~  238 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQN  238 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTT
T ss_pred             HHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCC
Confidence            443 5678888888888777642  223477888888888888765433 67788888888888888864 555677888


Q ss_pred             CCEEeccCCCCCC-hhHHHHHHcCCCccEEEeeCCc
Q 015457          325 LTLLNLSQNCNLT-DKTLELISGLTGLVSLNVSNSR  359 (406)
Q Consensus       325 L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~  359 (406)
                      |+.|++++| .+. ...+..+..+++|+.+++.++.
T Consensus       239 L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          239 LEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             CCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCEEEccCC-CccCcCHHHHHhccccceEEECCCch
Confidence            999999988 555 6677778888888888888654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=2e-25  Score=203.87  Aligned_cols=245  Identities=19%  Similarity=0.200  Sum_probs=211.3

Q ss_pred             ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457           85 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  164 (406)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (406)
                      .+.++..+..+...+ ..+  .++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccC-CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456666666655432 212  26899999999999998888899999999999999999988888899999999999999


Q ss_pred             CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCC-CcCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457          165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGS  243 (406)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  243 (406)
                      |.+....+..+..+++|++|++++|.+.......+..+++|+.|++++ +.+.......+..+++|+.|++++|.++.. 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            999876677788999999999999999877777888999999999998 455555556688899999999999988864 


Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  323 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  323 (406)
                       ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++......+..++
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence             2467889999999999999988778889999999999999999988788889999999999999999987777788899


Q ss_pred             CCCEEeccCCC
Q 015457          324 SLTLLNLSQNC  334 (406)
Q Consensus       324 ~L~~L~l~~~~  334 (406)
                      +|+.|++++|+
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            99999999985

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=2.1e-25  Score=203.01  Aligned_cols=246  Identities=19%  Similarity=0.207  Sum_probs=212.0

Q ss_pred             ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457           85 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  164 (406)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (406)
                      .+.++..+..+...+. .+  .++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++
T Consensus        45 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4566666666654332 22  26899999999999998788899999999999999999988888999999999999999


Q ss_pred             CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC-cCCchhHHhhcCCCCCcEEeccCCCCChhH
Q 015457          165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS  243 (406)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  243 (406)
                      |.+....+..+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++...
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            9998666667899999999999999998777778889999999999984 455555567888999999999999888642


Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  323 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  323 (406)
                        .+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++......+..++
T Consensus       202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence              467889999999999999988778888999999999999999988788888999999999999999988777788899


Q ss_pred             CCCEEeccCCCC
Q 015457          324 SLTLLNLSQNCN  335 (406)
Q Consensus       324 ~L~~L~l~~~~~  335 (406)
                      +|+.|++++|+.
T Consensus       280 ~L~~L~L~~Np~  291 (440)
T 3zyj_A          280 HLERIHLHHNPW  291 (440)
T ss_dssp             TCCEEECCSSCE
T ss_pred             CCCEEEcCCCCc
Confidence            999999999853

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=6.2e-26  Score=196.61  Aligned_cols=247  Identities=22%  Similarity=0.243  Sum_probs=139.7

Q ss_pred             CEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchh--HHhhhcCCCCCCeEEcc
Q 015457          110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLD  187 (406)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~  187 (406)
                      +.++.+++.++.. |..  ..+++++|+++++.+.......+..+++|+.|++++|.+...  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~i-p~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSC-CSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccC-CCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            3566666655553 322  235777777777777655555567777777777777766532  13444556777777777


Q ss_pred             CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhH-HhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCCh-
Q 015457          188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-  265 (406)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-  265 (406)
                      +|.+... +..+..+++|+.|+++++.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+ 
T Consensus        87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            7765432 3335566777777777766554432 345566666666666666555444445556666666666665544 


Q ss_pred             HHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHH
Q 015457          266 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS  345 (406)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  345 (406)
                      ..+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .+....+..+.
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  244 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ  244 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHHH
Confidence            12234445555666666665555544444555555555555555555543334445555555555555 44444444444


Q ss_pred             cCC-CccEEEeeCCccC
Q 015457          346 GLT-GLVSLNVSNSRIT  361 (406)
Q Consensus       346 ~~~-~L~~L~l~~~~~~  361 (406)
                      .++ +|+.|++++|++.
T Consensus       245 ~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCTTCCEEECTTCCEE
T ss_pred             hhhccCCEEEccCCCee
Confidence            442 5555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=3.8e-25  Score=189.56  Aligned_cols=224  Identities=23%  Similarity=0.247  Sum_probs=182.4

Q ss_pred             cEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457          134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  213 (406)
Q Consensus       134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  213 (406)
                      +.++.++..+... |..  ..++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++
T Consensus        14 ~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            5677777766643 222  2468999999999888766677888899999999999887776777888899999999988


Q ss_pred             c-CCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHH
Q 015457          214 Q-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  292 (406)
Q Consensus       214 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (406)
                      . +....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++..+...+..+++|+.|++++|.++...+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            6 666656777888999999999988887666677788899999999988887665667788889999999988887666


Q ss_pred             HHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          293 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       293 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                      ..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence            66778888999999998888877777888888999999888 777777777888888899999888865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=9.7e-25  Score=189.10  Aligned_cols=226  Identities=20%  Similarity=0.231  Sum_probs=120.1

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChh--hHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  160 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  160 (406)
                      ++|++|+++++.+...+...+.++++|++|++++|.+...  .+..+..+++|++|++++|.+.. .+..+..+++|+.|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            4566666666666544444456666666666666665532  13444556667777776666553 33345566667777


Q ss_pred             EecCCccchhHH-hhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCc-hhHHhhcCCCCCcEEeccCCC
Q 015457          161 NLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTG  238 (406)
Q Consensus       161 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~  238 (406)
                      ++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.. ..+..+..+++|+.|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            776666553322 345566666666666666554444445555666666666655433 223334444555555555555


Q ss_pred             CChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHh
Q 015457          239 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  318 (406)
Q Consensus       239 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  318 (406)
                      ++...+..+..+++|++|++++|.++.                        ..+..+..+++|+.|++++|.+.+..+..
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFS------------------------LDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSB------------------------CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCc------------------------cChhhccCcccCCEeECCCCCCcccCHHH
Confidence            444333334444444444444444443                        33333444455555555555554444444


Q ss_pred             hhcCC-CCCEEeccCC
Q 015457          319 IKDLS-SLTLLNLSQN  333 (406)
Q Consensus       319 ~~~~~-~L~~L~l~~~  333 (406)
                      +..++ +|+.|++++|
T Consensus       243 ~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             CCCCCTTCCEEECTTC
T ss_pred             HHhhhccCCEEEccCC
Confidence            44442 5555555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3e-26  Score=199.20  Aligned_cols=259  Identities=17%  Similarity=0.159  Sum_probs=199.4

Q ss_pred             CCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccC
Q 015457          109 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  188 (406)
Q Consensus       109 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (406)
                      ++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4455666666655545555667899999999999988777888999999999999998875443  78889999999999


Q ss_pred             CCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH
Q 015457          189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL  268 (406)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  268 (406)
                      |.+....     ..++|+.|+++++.+.....   ..+++|+.|++++|.++...+..+..+++|+.|++++|.+.....
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            8765332     34889999999998876543   346789999999998887666667778899999999998887655


Q ss_pred             HHH-hcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457          269 AAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  347 (406)
Q Consensus       269 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  347 (406)
                      ..+ ..+++|++|++++|.++...  ....+++|++|++++|.+++..+ .+..+++|+.|++++| .+.. .+..+..+
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~-l~~~~~~l  236 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVL-IEKALRFS  236 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCE-ECTTCCCC
T ss_pred             HHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccc-hhhHhhcC
Confidence            544 46788999999999887652  22347889999999998887644 4777889999999988 6664 34456778


Q ss_pred             CCccEEEeeCCccC-hhHHHhcCCCCCccEEEccCC
Q 015457          348 TGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC  382 (406)
Q Consensus       348 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~  382 (406)
                      ++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            88999999999888 555666677888888877743

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=5.9e-23  Score=180.46  Aligned_cols=253  Identities=19%  Similarity=0.213  Sum_probs=160.0

Q ss_pred             CCCEEEecCCCCChhhHHHHhcC--CCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchh-HHhhhcCCCCCCeE
Q 015457          108 KLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESL  184 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L  184 (406)
                      .++.++++++.+.   +..+..+  ++++.+++.++.+.+..+. +..+++|+.|++++|.+... .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3566666666554   2334444  6677777777666544333 34567777777777776654 56666777777888


Q ss_pred             EccCCCCChhhhHhhhCCCCCCEEEcCCC-cCCch-hHHhhcCCCCCcEEeccCC-CCChh-HHHHhhCCC-CCcEEECC
Q 015457          185 NLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNLD  259 (406)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~  259 (406)
                      ++++|.+....+..+..+++|+.|+++++ .+... ....+..+++|+.|++++| .+++. .+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            77777776666666667777777777777 45442 3344566777777777777 77654 344556677 77777777


Q ss_pred             CC--CCCh-HHHHHHhcCCCCCEEEccCCC-CChhHHHHhhcCCCCCEEEccCC-CCChHHHHhhhcCCCCCEEeccCCC
Q 015457          260 AR--QITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNC  334 (406)
Q Consensus       260 ~~--~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~  334 (406)
                      +|  .++. .....+..+++|++|++++|. +++..+..+..+++|++|++++| .+.......+..+++|+.|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            77  4553 223445567777777777777 55555556677777777777777 454444445666777777777777 


Q ss_pred             CCChhHHHHHHcCCCccEEEeeCCccChhHHHhc
Q 015457          335 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL  368 (406)
Q Consensus       335 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  368 (406)
                       +.......+.  .+++.|++++|.+++..+..+
T Consensus       283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             -cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence             4444333433  223444567777766554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=3e-22  Score=179.22  Aligned_cols=240  Identities=20%  Similarity=0.217  Sum_probs=139.4

Q ss_pred             HHHHhcCCCCcEEEcCCccCChhhhhh----ccCCCCccEEEecCCccc---hhHHhh-------hcCCCCCCeEEccCC
Q 015457          124 LDSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEIT---DECLVH-------LKGLTNLESLNLDSC  189 (406)
Q Consensus       124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~~~  189 (406)
                      +..+..+++|++|++++|.+....+..    +..+++|+.|+++++.+.   +..|..       +..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            445667788888888888877654433    556788888888775332   222322       356777777777777


Q ss_pred             CCCh----hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcC----C---------CCCcEEeccCCCCChhHH----HHhh
Q 015457          190 GIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG----L---------TNLESINLSFTGISDGSL----RKLA  248 (406)
Q Consensus       190 ~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~----~---------~~L~~L~l~~~~~~~~~~----~~l~  248 (406)
                      .+..    ..+..+..+++|+.|++++|.+.......+..    +         ++|+.|++++|.+++...    ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            7665    23445566777777777777765433333322    2         666677776666653222    2344


Q ss_pred             CCCCCcEEECCCCCCChHH----HH-HHhcCCCCCEEEccCCCCC----hhHHHHhhcCCCCCEEEccCCCCChHHHH--
Q 015457          249 GLSSLKSLNLDARQITDTG----LA-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVK--  317 (406)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--  317 (406)
                      .+++|++|++++|.+....    .. .+..+++|+.|++++|.++    ...+..+..+++|++|++++|.+++.+..  
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            5666666666666666432    11 3445666666666666664    22334455566666666666666655322  


Q ss_pred             --hhhc--CCCCCEEeccCCCCCCh----hHHHHH-HcCCCccEEEeeCCccChhH
Q 015457          318 --HIKD--LSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAG  364 (406)
Q Consensus       318 --~~~~--~~~L~~L~l~~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~~~  364 (406)
                        .+..  +++|+.|++++| .+..    ..+..+ .++++|+.|++++|++++..
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              2211  566666666666 4554    233333 34566666666666655433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=6.6e-23  Score=180.17  Aligned_cols=251  Identities=20%  Similarity=0.201  Sum_probs=197.8

Q ss_pred             CCCcEEEcCCccCChhhhhhccCC--CCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChh-hhHhhhCCCCCCE
Q 015457          131 GSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKC  207 (406)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~  207 (406)
                      ..++.++++++.+..   ..+..+  ++++.++++++.+.+..+. +..+++|++|++++|.+... .+..+..+++|+.
T Consensus        47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            458899999887763   334444  7899999999988755444 45789999999999987655 5667788999999


Q ss_pred             EEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChh-HHHHhhCCCCCcEEECCCC-CCChHH-HHHHhcCC-CCCEEEc
Q 015457          208 LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLSSLKSLNLDAR-QITDTG-LAALTSLT-GLTHLDL  282 (406)
Q Consensus       208 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~-~L~~L~l  282 (406)
                      |+++++.+....+..++.+++|+.|++++| .+++. .+..+..+++|++|++++| .+++.. ...+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999988777788888999999999998 77764 4555778999999999999 888753 45677888 9999999


Q ss_pred             cCC--CCC-hhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCC
Q 015457          283 FGA--RIT-DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  358 (406)
Q Consensus       283 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  358 (406)
                      ++|  .++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|..+.......+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999  566 3445667789999999999998 777777788889999999999996666655566788999999999999


Q ss_pred             ccChhHHHhcCCCCCccEEEccCCCCChhh
Q 015457          359 RITSAGLRHLKPLKNLRSLTLESCKVTAND  388 (406)
Q Consensus       359 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~  388 (406)
                       +++.....+..  .++.|++++|.++...
T Consensus       283 -i~~~~~~~l~~--~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          283 -VPDGTLQLLKE--ALPHLQINCSHFTTIA  309 (336)
T ss_dssp             -SCTTCHHHHHH--HSTTSEESCCCSCCTT
T ss_pred             -cCHHHHHHHHh--hCcceEEecccCcccc
Confidence             76655555432  2444557888877643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=7e-24  Score=184.79  Aligned_cols=205  Identities=17%  Similarity=0.134  Sum_probs=115.4

Q ss_pred             ccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhc-------
Q 015457           79 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-------  151 (406)
Q Consensus        79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------  151 (406)
                      +..+++|++|++++|.+. ..+..+.++++|++|++++|.+.. .|..+..+++|++|++++|.+....+..+       
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            334444555555444444 223334444555555555554442 24444455555555555544333333322       


Q ss_pred             --cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCC
Q 015457          152 --SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL  229 (406)
Q Consensus       152 --~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  229 (406)
                        ..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+....+..++.+++|
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence              23566666666666665 4455566666666666666665533 2345566666666666666555555556666677


Q ss_pred             cEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCC
Q 015457          230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  287 (406)
Q Consensus       230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  287 (406)
                      +.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.+.+..+.+
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            7777766665555555566667777777777666665556666677777776665443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=3.6e-22  Score=178.66  Aligned_cols=257  Identities=18%  Similarity=0.188  Sum_probs=180.0

Q ss_pred             HhhhcCCCCCEEEecCCCCChhhHHH----HhcCCCCcEEEcCCccCC---hhhhh-------hccCCCCccEEEecCCc
Q 015457          101 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE  166 (406)
Q Consensus       101 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~l~~~~  166 (406)
                      ..+..+++|++|++++|.+....+..    +..+++|++|++++|.+.   +..+.       .+..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            45677888999999988887765444    456888999988886433   22222       23677889999999888


Q ss_pred             cch----hHHhhhcCCCCCCeEEccCCCCChhhhHhhhC----C---------CCCCEEEcCCCcCCchhH----HhhcC
Q 015457          167 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSG  225 (406)
Q Consensus       167 ~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~l~l~~~~~~~~~~----~~l~~  225 (406)
                      +..    .++..+..+++|++|++++|.++...+..+..    +         ++|+.|++++|.+.....    ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            876    46677788888999999888876544433333    3         788999998888864332    34567


Q ss_pred             CCCCcEEeccCCCCChhH----HH-HhhCCCCCcEEECCCCCCCh----HHHHHHhcCCCCCEEEccCCCCChhH----H
Q 015457          226 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQITD----TGLAALTSLTGLTHLDLFGARITDSG----A  292 (406)
Q Consensus       226 ~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~  292 (406)
                      +++|+.|++++|.++...    .. .+..+++|+.|++++|.++.    ..+..+..+++|++|++++|.++..+    +
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            788999999888887532    22 56678889999999888863    23455677888999999998888753    3


Q ss_pred             HHhhc--CCCCCEEEccCCCCChH----HHHhh-hcCCCCCEEeccCCCCCChhHH--HHH-HcCCCccEEEeeCC
Q 015457          293 AYLRN--FKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELI-SGLTGLVSLNVSNS  358 (406)
Q Consensus       293 ~~~~~--~~~L~~L~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~l-~~~~~L~~L~l~~~  358 (406)
                      ..+..  +++|++|++++|.+++.    .+..+ ..+++|+.|++++| .+....+  ..+ ..++.++.+++...
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence            34433  78899999999888883    34444 55789999999988 5554442  332 23455555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.2e-24  Score=187.99  Aligned_cols=231  Identities=16%  Similarity=0.122  Sum_probs=131.8

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      +++++|+++++.+.. .+..+.++++|++|++++|.+. ..|..+..+++|++|++++|.+. ..+..+..+++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            445555555554442 2233444555555555555544 23444445555555555555444 23344444555555555


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  242 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  242 (406)
                      ++|...+..|..+..      ..         ....+..+++|+.|++++|.+.. .+..++.+++|+.|++++|.++..
T Consensus       158 ~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          158 RACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL  221 (328)
T ss_dssp             EEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCC
T ss_pred             CCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcC
Confidence            544333333322221      00         00012235666666666666552 234456666677777766666542


Q ss_pred             HHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcC
Q 015457          243 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL  322 (406)
Q Consensus       243 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  322 (406)
                       +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+
T Consensus       222 -~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          222 -GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             -CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             -chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence             2345666777777777766665545556677777788887777766666667777888888888877777777777888


Q ss_pred             CCCCEEeccCC
Q 015457          323 SSLTLLNLSQN  333 (406)
Q Consensus       323 ~~L~~L~l~~~  333 (406)
                      ++|+.+.+..+
T Consensus       301 ~~L~~l~l~~~  311 (328)
T 4fcg_A          301 PANCIILVPPH  311 (328)
T ss_dssp             CTTCEEECCGG
T ss_pred             cCceEEeCCHH
Confidence            88888877765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=5.7e-23  Score=182.01  Aligned_cols=223  Identities=22%  Similarity=0.225  Sum_probs=124.6

Q ss_pred             EEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhh----hhccCCC-CccEEEecCCccchhHHhhhcCC-----CC
Q 015457          111 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TN  180 (406)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~  180 (406)
                      .++++.+.+.+..|..+...++|++|++++|.+....+    ..+..++ +|+.|++++|.+....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677778887766666666668888888888776555    5566666 78888888877765444444332     77


Q ss_pred             CCeEEccCCCCChhhhHh----hhCC-CCCCEEEcCCCcCCchhHHhh----cC-CCCCcEEeccCCCCChhH----HHH
Q 015457          181 LESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRHL----SG-LTNLESINLSFTGISDGS----LRK  246 (406)
Q Consensus       181 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~l~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~----~~~  246 (406)
                      |++|++++|.++...+..    +... ++|+.|++++|.+.......+    .. +++|+.|++++|.+++..    ...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            777777777765444432    2333 567777777766655444332    22 246666666666655322    222


Q ss_pred             hhCCC-CCcEEECCCCCCChHHHH----HHhcC-CCCCEEEccCCCCChh----HHHHhhc-CCCCCEEEccCCCCChHH
Q 015457          247 LAGLS-SLKSLNLDARQITDTGLA----ALTSL-TGLTHLDLFGARITDS----GAAYLRN-FKNLRSLEICGGGLTDAG  315 (406)
Q Consensus       247 l~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~  315 (406)
                      +...+ +|++|++++|.++.....    .+..+ ++|+.|++++|.++..    .+..+.. .++|++|++++|.+.+.+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            33333 566666666655543332    22233 3566666666555542    1222222 335555555555554433


Q ss_pred             HHh----hhcCCCCCEEeccCC
Q 015457          316 VKH----IKDLSSLTLLNLSQN  333 (406)
Q Consensus       316 ~~~----~~~~~~L~~L~l~~~  333 (406)
                      ...    +..+++|+.|++++|
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHhcCCCccEEEeccC
Confidence            321    233455555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=6.5e-25  Score=190.36  Aligned_cols=205  Identities=21%  Similarity=0.193  Sum_probs=94.2

Q ss_pred             CCCccEEEecCCccchhHHhhh--cCCCCCCeEEccCCCCChhhhHhhhCC-----CCCCEEEcCCCcCCchhHHhhcCC
Q 015457          154 IGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL  226 (406)
Q Consensus       154 l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~l~~~  226 (406)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+... +..+..+     ++|++|++++|.+....+..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3444444444444443333332  4444555555555444333 2222222     445555555444444433444444


Q ss_pred             CCCcEEeccCCCCChh--HHHHh--hCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCC
Q 015457          227 TNLESINLSFTGISDG--SLRKL--AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR  302 (406)
Q Consensus       227 ~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  302 (406)
                      ++|+.|++++|.+...  .+..+  ..+++|++|++++|.++..+                     ......+..+++|+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQ  231 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCS
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCC
Confidence            5555555555544332  11122  33444444444444444211                     11112223344444


Q ss_pred             EEEccCCCCChHHH-HhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccC
Q 015457          303 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES  381 (406)
Q Consensus       303 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~  381 (406)
                      +|++++|.+.+..+ ..+..+++|++|++++| .+.. .+..+.  ++|+.|++++|++++. + .+..+++|++|++++
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p-~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-P-SPDELPQVGNLSLKG  305 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-C-CTTTSCEEEEEECTT
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-h-hHhhCCCCCEEeccC
Confidence            44444444444321 22233455666666655 3442 222222  5677777777776664 2 256677777777777


Q ss_pred             CCCCh
Q 015457          382 CKVTA  386 (406)
Q Consensus       382 ~~~~~  386 (406)
                      |+++.
T Consensus       306 N~l~~  310 (312)
T 1wwl_A          306 NPFLD  310 (312)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            77664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=1.4e-24  Score=188.22  Aligned_cols=203  Identities=21%  Similarity=0.232  Sum_probs=97.8

Q ss_pred             cCCCCCEEEecCCCCChhhHHHH--hcCCCCcEEEcCCccCChhhhhhccCC-----CCccEEEecCCccchhHHhhhcC
Q 015457          105 GLQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKG  177 (406)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~  177 (406)
                      ++++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+. +..+..+     ++|++|++++|.+.+..+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            34445555555544443333332  3444555555555444433 3333322     44555555555544443344445


Q ss_pred             CCCCCeEEccCCCCChh--hhHhh--hCCCCCCEEEcCCCcCCc---hhHHhhcCCCCCcEEeccCCCCChhHH-HHhhC
Q 015457          178 LTNLESLNLDSCGIGDE--GLVNL--TGLCNLKCLELSDTQVGS---SGLRHLSGLTNLESINLSFTGISDGSL-RKLAG  249 (406)
Q Consensus       178 ~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~  249 (406)
                      +++|++|++++|.+...  .+..+  ..+++|+.|++++|.+..   .....+..+++|+.|++++|.++...+ ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            55555555555543322  11122  444555555555555442   112223345555555555555544321 22233


Q ss_pred             CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457          250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  313 (406)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  313 (406)
                      +++|+.|++++|.++..+ ..+.  ++|+.|++++|.+++. +. +..+++|++|++++|.+++
T Consensus       252 l~~L~~L~Ls~N~l~~ip-~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVP-KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCSSCC-SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccChhh-hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            456666666666655322 1111  5666677776666654 22 5566777777777776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=4.7e-22  Score=186.15  Aligned_cols=268  Identities=21%  Similarity=0.111  Sum_probs=193.4

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  113 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  113 (406)
                      .++++|+++++... ..+..+.  ++|++|++++|. ++....    .+++|++|++++|.++..+.    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            46899999987743 4444443  789999999864 443222    57899999999998875433    678899999


Q ss_pred             ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457          114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  193 (406)
Q Consensus       114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  193 (406)
                      +++|.+.....    .+++|++|++++|.+.... .   .+++|++|++++|.+.. +|.   .+++|+.|++++|.++.
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            99998877532    5788999999998877532 2   24789999999888774 232   35688889998888765


Q ss_pred             hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457          194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  273 (406)
Q Consensus       194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  273 (406)
                      ..    ..+++|+.|++++|.+....    ...++|+.|++++|.++...    ..+++|+.|++++|.++..+    ..
T Consensus       176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~  239 (622)
T 3g06_A          176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL  239 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred             Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence            43    45678888888888876532    23478888888888776532    13477888888888877643    45


Q ss_pred             CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC
Q 015457          274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  347 (406)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  347 (406)
                      +++|+.|++++|.++....    .+++|+.|++++|.++.. +..+..+++|+.|++++| .+....+..+..+
T Consensus       240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L  307 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREI  307 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhc
Confidence            6788888888888775432    567888888888887754 556777888888888888 6776666665543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.6e-22  Score=177.73  Aligned_cols=252  Identities=15%  Similarity=0.189  Sum_probs=184.0

Q ss_pred             EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhH----HHHhcCC-CCcEEEcCCccCChhhhhhccCC-----CC
Q 015457           87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSKI-----GS  156 (406)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~  156 (406)
                      ++.++.+.+++..+..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45678888887777766666779999999998887666    6677788 89999999998887666555553     89


Q ss_pred             ccEEEecCCccchhHHh----hhcCC-CCCCeEEccCCCCChhhhHhhh----C-CCCCCEEEcCCCcCCchhH----Hh
Q 015457          157 LKVLNLGFNEITDECLV----HLKGL-TNLESLNLDSCGIGDEGLVNLT----G-LCNLKCLELSDTQVGSSGL----RH  222 (406)
Q Consensus       157 L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~----~~  222 (406)
                      |+.|++++|.+....+.    .+... ++|+.|++++|.++......+.    . .++|++|++++|.+.....    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999988754444    34444 7999999999988765554433    3 3589999999998875433    33


Q ss_pred             hcCCC-CCcEEeccCCCCChhHHH----HhhCC-CCCcEEECCCCCCChHH----HHHHhc-CCCCCEEEccCCCCChhH
Q 015457          223 LSGLT-NLESINLSFTGISDGSLR----KLAGL-SSLKSLNLDARQITDTG----LAALTS-LTGLTHLDLFGARITDSG  291 (406)
Q Consensus       223 l~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~  291 (406)
                      +...+ +|+.|++++|.+++....    .+..+ ++|++|++++|.+....    ...+.. .++|++|++++|.+++.+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            45555 899999999988765543    34455 59999999999888732    233444 458999999999988754


Q ss_pred             H----HHhhcCCCCCEEEccCCC---CChHHHH----hhhcCCCCCEEeccCCCCCChh
Q 015457          292 A----AYLRNFKNLRSLEICGGG---LTDAGVK----HIKDLSSLTLLNLSQNCNLTDK  339 (406)
Q Consensus       292 ~----~~~~~~~~L~~L~l~~~~---~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~  339 (406)
                      .    ..+..+++|++|++++|.   ++.....    .+..+++|+.|++++| .+...
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence            4    334667899999999987   4433222    3445677888888888 55554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=6.3e-24  Score=194.97  Aligned_cols=236  Identities=19%  Similarity=0.168  Sum_probs=115.4

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+....               
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---------------   96 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL---------------   96 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---------------
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---------------
Confidence            355555555555554444445555555555555555444322  444555555555554443211               


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  242 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  242 (406)
                                    ..++|+.|++++|.+....+.   .+++|+.|++++|.+....+..++.+++|+.|++++|.++..
T Consensus        97 --------------~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A           97 --------------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             --------------ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             --------------CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence                          124444444444444332221   234455555555554444333444445555555555555443


Q ss_pred             HHHHhh-CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhc
Q 015457          243 SLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD  321 (406)
Q Consensus       243 ~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  321 (406)
                      .+..+. .+++|+.|++++|.+++.  .....+++|+.|++++|.++..++. +..+++|+.|++++|.+.+. +..+..
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~  235 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRF  235 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCC
T ss_pred             ChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhcc
Confidence            333333 345555555555555543  1122355566666666665543332 45556666666666666543 334555


Q ss_pred             CCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457          322 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  356 (406)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  356 (406)
                      +++|+.|++++|+......+..+..++.|+.+++.
T Consensus       236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            56666666666632223444555555555555553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=2.1e-21  Score=181.72  Aligned_cols=244  Identities=16%  Similarity=0.074  Sum_probs=109.0

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  113 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  113 (406)
                      ++|++|++++|... ..+.   .+++|++|++++|. ++....    .+++|++|++++|.+...+.    .+++|+.|+
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEE
Confidence            45555555554422 1111   34455555555533 221111    34555555555554443221    334555555


Q ss_pred             ecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh
Q 015457          114 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  193 (406)
Q Consensus       114 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  193 (406)
                      +++|.+... |.   .+++|++|++++|.+.... .   .+++|+.|++++|.+.. +|   ..+++|+.|++++|.+..
T Consensus       128 L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          128 IFGNQLTSL-PV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             CCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred             CCCCCCCcC-CC---CCCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence            555544442 11   2345555555555444311 1   12445555555555442 22   233455555555554432


Q ss_pred             hhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhc
Q 015457          194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  273 (406)
Q Consensus       194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  273 (406)
                      ...    ..++|+.|++++|.+....    ..+++|+.|++++|.++...    ..+++|+.|++++|.++..+.    .
T Consensus       196 l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~  259 (622)
T 3g06_A          196 LPT----LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----L  259 (622)
T ss_dssp             CCC----CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----C
T ss_pred             CCC----ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----c
Confidence            111    1244555555555444321    12345555555555444321    234455555555555544321    3


Q ss_pred             CCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhh
Q 015457          274 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI  319 (406)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  319 (406)
                      +++|+.|++++|.++.. +..+..+++|+.|++++|.+.+..+..+
T Consensus       260 ~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          260 PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             CTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             cccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            44555555555555432 3334455555555555555555444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.3e-23  Score=192.96  Aligned_cols=237  Identities=16%  Similarity=0.153  Sum_probs=185.1

Q ss_pred             CCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcE
Q 015457           56 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY  135 (406)
Q Consensus        56 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  135 (406)
                      .+++|++|++++| .+....+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+....     ..++|++
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred             cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence            4569999999995 4666667788999999999999999876554  889999999999999887642     3489999


Q ss_pred             EEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhh-CCCCCCEEEcCCCc
Q 015457          136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQ  214 (406)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~  214 (406)
                      |++++|.+....+.   .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            99999998875543   457899999999999887787888899999999999998876666665 68899999999998


Q ss_pred             CCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCC-hhHHH
Q 015457          215 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAA  293 (406)
Q Consensus       215 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~  293 (406)
                      +....  ....+++|+.|++++|.++...+ .+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+. ...+.
T Consensus       181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCCCCcCcchHH
Confidence            87652  23457888888888888876433 3667788888888888877642 34566777888888888777 34455


Q ss_pred             HhhcCCCCCEEEcc
Q 015457          294 YLRNFKNLRSLEIC  307 (406)
Q Consensus       294 ~~~~~~~L~~L~l~  307 (406)
                      ++..++.|+.+++.
T Consensus       257 ~~~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhCCCCcEEecc
Confidence            56666666655553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=8.9e-23  Score=173.95  Aligned_cols=208  Identities=24%  Similarity=0.244  Sum_probs=104.4

Q ss_pred             CCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEec
Q 015457          155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  234 (406)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  234 (406)
                      ++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.......+..+++|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666666444445566666666666666665544445555666666666666655554445555566666666


Q ss_pred             cCCCCChhHHHHhhCCCCCcEEECCCCCCChHH-HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCCh
Q 015457          235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  313 (406)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  313 (406)
                      ++|.+.......+..+++|++|++++|.+.... +..+..+++|++|++++|.++...+..+..+++|+           
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-----------  176 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-----------  176 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence            555554433333444555555555555544421 23344445555555555554443322232222232           


Q ss_pred             HHHHhhhcCCCCC-EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCC
Q 015457          314 AGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  385 (406)
Q Consensus       314 ~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~  385 (406)
                                .+. .|++++| .+....+..+ ...+|+.|++++|.++......+..+++|+.+++++|++.
T Consensus       177 ----------~l~l~L~ls~n-~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          177 ----------LLNLSLDLSLN-PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ----------TCCEEEECCSS-CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ----------ccceeeecCCC-cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence                      111 4444444 3333222222 1224555555555555444444445555555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1.1e-21  Score=167.14  Aligned_cols=133  Identities=21%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      +|++|+++++.+.......+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444443333344444445555555444444433344444455555555444444333444444445555554


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCCChh-hhHhhhCCCCCCEEEcCCCcCC
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      +|.+....+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            4444433232344444455555544444331 1333444444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.7e-20  Score=159.08  Aligned_cols=179  Identities=21%  Similarity=0.184  Sum_probs=79.6

Q ss_pred             ccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457           85 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  164 (406)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (406)
                      +++|+++++.+.......+.++++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  118 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR  118 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence            34444444433333333333444444444444443333222233344444444444444433333344444444444444


Q ss_pred             CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH
Q 015457          165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL  244 (406)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  244 (406)
                      |.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.+.......+..+++|+.|++++|.++....
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence            44443333334444444445444444443333334444555555555554444433344445555555555555544333


Q ss_pred             HHhhCCCCCcEEECCCCCC
Q 015457          245 RKLAGLSSLKSLNLDARQI  263 (406)
Q Consensus       245 ~~l~~~~~L~~L~l~~~~~  263 (406)
                      ..+..+++|+.|++++|.+
T Consensus       199 ~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          199 GAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCB
T ss_pred             HHhccccCCCEEEecCCCe
Confidence            3344555555666655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.1e-20  Score=160.36  Aligned_cols=180  Identities=22%  Similarity=0.211  Sum_probs=85.8

Q ss_pred             CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457          108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  187 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  187 (406)
                      +++.|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            44555555554444433344445555555555554444333344444555555555554443333334444555555555


Q ss_pred             CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457          188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  267 (406)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (406)
                      +|.+....+..+..+++|+.|+++++.+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++..+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            55444444444444555555555555444443333444455555555555444433333444455555555555444433


Q ss_pred             HHHHhcCCCCCEEEccCCCC
Q 015457          268 LAALTSLTGLTHLDLFGARI  287 (406)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~  287 (406)
                      ...+..+++|+.|++++|.+
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCB
T ss_pred             HHHhccccCCCEEEecCCCe
Confidence            33344445555555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=2.2e-21  Score=164.66  Aligned_cols=158  Identities=25%  Similarity=0.221  Sum_probs=80.4

Q ss_pred             ccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCcc
Q 015457           79 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK  158 (406)
Q Consensus        79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  158 (406)
                      ...+++|+.|.+.++.+...  ..+..+++|++|++++|.+...  ..+..+++|++|++++|.+....+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34556666666666655532  2355666666666666665542  2455566666666666655554444455555555


Q ss_pred             EEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCC
Q 015457          159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  238 (406)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  238 (406)
                      +|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......++.+++|+.|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            55555555554434444455555555555555443333333444444444444444433333333333444444444433


Q ss_pred             CC
Q 015457          239 IS  240 (406)
Q Consensus       239 ~~  240 (406)
                      ++
T Consensus       193 l~  194 (272)
T 3rfs_A          193 LK  194 (272)
T ss_dssp             CS
T ss_pred             CC
Confidence            33

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=5.2e-21  Score=162.38  Aligned_cols=178  Identities=21%  Similarity=0.197  Sum_probs=80.5

Q ss_pred             cCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCE
Q 015457           32 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL  111 (406)
Q Consensus        32 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  111 (406)
                      .+++|+.|+++++...  ....+..+++|++|++++|. +..  ...+..+++|++|++++|.+....+..+.++++|++
T Consensus        39 ~l~~L~~L~l~~~~i~--~~~~l~~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNK-LHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCC--CCTTGGGCTTCCEEECTTSC-CCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCcc--cccccccCCCCcEEECCCCC-CCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            3445555555544321  12234445555555555433 221  123444455555555555444433333444455555


Q ss_pred             EEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          112 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       112 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      |++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            55555544444333344445555555555544443333344444555555555444433333344444455555544444


Q ss_pred             ChhhhHhhhCCCCCCEEEcCCCc
Q 015457          192 GDEGLVNLTGLCNLKCLELSDTQ  214 (406)
Q Consensus       192 ~~~~~~~~~~~~~L~~l~l~~~~  214 (406)
                      ....+..+..+++|+.+++++|.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHHHHhCCcCCCEEEccCCC
Confidence            43333334444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=3e-20  Score=160.42  Aligned_cols=194  Identities=28%  Similarity=0.389  Sum_probs=155.6

Q ss_pred             cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcE
Q 015457          152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  231 (406)
Q Consensus       152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  231 (406)
                      ..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+....+  +..+++|+.|+++++.+...  ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            346789999999988774 33 57788999999999998876544  77889999999999987764  35778899999


Q ss_pred             EeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCC
Q 015457          232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  311 (406)
Q Consensus       232 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  311 (406)
                      |++++|.++...  .+..+++|++|++++|.+.....  +..+++|+.|++++|.++...+  +..+++|+.|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            999999887743  37788999999999998887543  7788899999999998887544  77888999999999988


Q ss_pred             ChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccCh
Q 015457          312 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  362 (406)
                      .+..+  +..+++|+.|++++| .+....  .+..+++|+.|++++|+++.
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh--hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCeeec
Confidence            87643  778889999999988 666554  37788899999999988765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=6.2e-20  Score=158.47  Aligned_cols=191  Identities=28%  Similarity=0.386  Sum_probs=160.0

Q ss_pred             HhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCC
Q 015457          127 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK  206 (406)
Q Consensus       127 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  206 (406)
                      ...+++|++|++.++.+...  ..+..+++|+.|++++|.+....+  +..+++|++|++++|.+...  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            34578899999999988753  357788999999999998875444  78899999999999988654  3577899999


Q ss_pred             EEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCC
Q 015457          207 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  286 (406)
Q Consensus       207 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  286 (406)
                      .|+++++.+....  .+..+++|+.|++++|.++....  +..+++|+.|++++|.+.....  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            9999999987653  37889999999999998887544  7788999999999999887543  7889999999999999


Q ss_pred             CChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       287 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      ++...+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC
Confidence            987543  788999999999999998864  3788999999999998

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.7e-20  Score=156.12  Aligned_cols=198  Identities=17%  Similarity=0.134  Sum_probs=138.8

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEecc-CccChhHHHhhhcCCCCCEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L  112 (406)
                      ++|++|+++++.........+..+++|++|++++|..++......+..+++|++|++++ +.+....+..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            36778888777644433445777788888888876545555555677778888888876 77776666667777888888


Q ss_pred             EecCCCCChhhHHHHhcCCCCc---EEEcCCc-cCChhhhhhccCCCCcc-EEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457          113 NLEGCPVTAACLDSLSALGSLF---YLNLNRC-QLSDDGCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTNLESLNLD  187 (406)
Q Consensus       113 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  187 (406)
                      ++++|.+... |. +..+++|+   ++++++| .+....+..|..+++|+ .+++++|.+....+..+.. ++|+.|+++
T Consensus       111 ~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            8888777663 33 66677776   8888887 77766666677778888 8888888776333333433 678888888


Q ss_pred             CCC-CChhhhHhhhCC-CCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC
Q 015457          188 SCG-IGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT  237 (406)
Q Consensus       188 ~~~-~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  237 (406)
                      +|. +....+..+..+ ++|+.++++++.+......   .+++|+.|++.++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            884 766656667777 7888888888877654332   4677888877654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=5.6e-21  Score=165.48  Aligned_cols=227  Identities=18%  Similarity=0.105  Sum_probs=122.0

Q ss_pred             CCCcEEEcCCccCChhhhhh---ccCCCCccEEEecCCccchhHHhhh--cCCCCCCeEEccCCCCChhhh----HhhhC
Q 015457          131 GSLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGL----VNLTG  201 (406)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~  201 (406)
                      ..++.+.+.++.+.......   +..+++|+.|++++|.+.+..|..+  ..+++|+.|++++|.+....+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            45666777666554322211   1123456777777666665555544  556666666666666543211    22234


Q ss_pred             CCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHH----HHHhcCCCC
Q 015457          202 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGL  277 (406)
Q Consensus       202 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L  277 (406)
                      +++|+.|++++|.+....+..++.                        +++|++|++++|.+.+...    ..+..+++|
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  199 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRA------------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAI  199 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCC------------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhcc------------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence            455555555555544443344444                        4445555555544433211    011345556


Q ss_pred             CEEEccCCCCChhHHH---HhhcCCCCCEEEccCCCCChHHHHhhhcC---CCCCEEeccCCCCCChhHHHHHHcCCCcc
Q 015457          278 THLDLFGARITDSGAA---YLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLV  351 (406)
Q Consensus       278 ~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  351 (406)
                      ++|++++|.++.....   .+..+++|++|++++|.+.+..+..+..+   ++|++|++++| .+... +..+  +++|+
T Consensus       200 ~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~  275 (310)
T 4glp_A          200 QNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLR  275 (310)
T ss_dssp             CSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCS
T ss_pred             CEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCC
Confidence            6666666655532211   23455666666666666655544333333   56777777776 45532 2222  26778


Q ss_pred             EEEeeCCccChhHHHhcCCCCCccEEEccCCCCChh
Q 015457          352 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       352 ~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~  387 (406)
                      .|++++|++++..  .+..+++|+.|++++|+++.+
T Consensus       276 ~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          276 VLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred             EEECCCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence            8888888777642  246678888888888887653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=7e-20  Score=156.54  Aligned_cols=156  Identities=24%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             ccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 015457           54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL  133 (406)
Q Consensus        54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  133 (406)
                      +..++++++++++++. ++..+.. +  .+++++|++++|.+....+..+..+++|+.|++++|.+....+  ...+++|
T Consensus         6 ~~~l~~l~~l~~~~~~-l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRN-LTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSC-CSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             ccccCCccEEECCCCC-CCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            4455666666666532 3322211 1  2456666666666555444555556666666666655554322  1345555


Q ss_pred             cEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCC
Q 015457          134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  213 (406)
Q Consensus       134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  213 (406)
                      ++|++++|.+.. .+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            555555555442 2233344444555555544444333333444444444444444443333333333444444444444


Q ss_pred             cCC
Q 015457          214 QVG  216 (406)
Q Consensus       214 ~~~  216 (406)
                      .+.
T Consensus       159 ~l~  161 (290)
T 1p9a_G          159 NLT  161 (290)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=1.8e-19  Score=154.00  Aligned_cols=202  Identities=20%  Similarity=0.184  Sum_probs=105.1

Q ss_pred             cCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccE
Q 015457           80 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV  159 (406)
Q Consensus        80 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  159 (406)
                      .+++++++++++++.+...+. .+  .+.++.|++++|.+....+..+..+++|++|++++|.+.....  ...+++|+.
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            345555555555555443221 11  1345555555555555545555555556666655555543322  144555556


Q ss_pred             EEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCC
Q 015457          160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI  239 (406)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  239 (406)
                      |++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            666555554 3344445555555565555555544444455555556666555555544444445555555565555555


Q ss_pred             ChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCC
Q 015457          240 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  288 (406)
Q Consensus       240 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (406)
                      +......+..+++|+.|++++|.++..+ ..+..+++|+.+++++|.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip-~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccC-hhhcccccCCeEEeCCCCcc
Confidence            5444334445555566666555555432 22233445666666655544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=3.7e-20  Score=160.32  Aligned_cols=152  Identities=19%  Similarity=0.146  Sum_probs=75.6

Q ss_pred             CCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhH----HhhcCCCCCcEEeccCCCCChhHH--H-HhhC
Q 015457          177 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSL--R-KLAG  249 (406)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~--~-~l~~  249 (406)
                      .+++|++|++++|.+....+..+..+++|++|++++|.+.....    ..++.+++|+.|++++|.++....  . .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            34444444444444433333344444445555554444322110    111344555555555555543211  1 2344


Q ss_pred             CCCCcEEECCCCCCChHHHHHHhcC---CCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCC
Q 015457          250 LSSLKSLNLDARQITDTGLAALTSL---TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  326 (406)
Q Consensus       250 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  326 (406)
                      +++|++|++++|.+....+..+..+   ++|++|++++|.++.. +..+  .++|++|++++|.+++. + .+..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRA-P-QPDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence            5666666666666555422223333   4666666666666632 2222  25677777777766653 1 245567777


Q ss_pred             EEeccCC
Q 015457          327 LLNLSQN  333 (406)
Q Consensus       327 ~L~l~~~  333 (406)
                      .|++++|
T Consensus       298 ~L~L~~N  304 (310)
T 4glp_A          298 NLTLDGN  304 (310)
T ss_dssp             CEECSST
T ss_pred             EEECcCC
Confidence            7777777

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.3e-19  Score=150.80  Aligned_cols=197  Identities=19%  Similarity=0.210  Sum_probs=155.9

Q ss_pred             CCccEEeecCCCCcCcCccccccCCCCccEEEeccCc-cChhHHHhhhcCCCCCEEEecC-CCCChhhHHHHhcCCCCcE
Q 015457           58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFY  135 (406)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~  135 (406)
                      ++|++|+++++. ++......+..+++|++|++++|. +.......+.++++|++|++++ +.+....+..+..+++|++
T Consensus        31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            478999998854 555556677889999999999886 7766666788899999999998 8888776677888999999


Q ss_pred             EEcCCccCChhhhhhccCCCCcc---EEEecCC-ccchhHHhhhcCCCCCC-eEEccCCCCChhhhHhhhCCCCCCEEEc
Q 015457          136 LNLNRCQLSDDGCEKFSKIGSLK---VLNLGFN-EITDECLVHLKGLTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLEL  210 (406)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l  210 (406)
                      |++++|.+.. .+. +..+++|+   .|++++| .+....+..+..+++|+ .+++++|.+.......+.. ++|+.+++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            9999988876 333 77777777   9999998 78766666688889999 9999999887555444444 78999999


Q ss_pred             CCCc-CCchhHHhhcCC-CCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCC
Q 015457          211 SDTQ-VGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR  261 (406)
Q Consensus       211 ~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  261 (406)
                      ++|. +.......+..+ ++|+.|++++|.++.....   .+++|+.|.+.++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            9994 777666777888 8999999999888764322   5788899988775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=3.3e-18  Score=143.32  Aligned_cols=155  Identities=22%  Similarity=0.250  Sum_probs=66.0

Q ss_pred             CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEc
Q 015457           59 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  138 (406)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  138 (406)
                      +++.|+++++. +.......+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus        36 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            44555554422 23333333444444555555444444433333444444444444444444433333444444444444


Q ss_pred             CCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc
Q 015457          139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  214 (406)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  214 (406)
                      ++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            4444443333333444444444444444443323333444444444444444433333333333444444444333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=3.1e-18  Score=143.45  Aligned_cols=156  Identities=25%  Similarity=0.252  Sum_probs=86.1

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      +++++|+++++.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            46667777766666555555666666666666666666655555566666666666666665544455555566666666


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCC
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  238 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  238 (406)
                      ++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            6665554333444555555555555555544433344444555555555554443333333444444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1e-17  Score=143.32  Aligned_cols=172  Identities=26%  Similarity=0.317  Sum_probs=130.9

Q ss_pred             cCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcE
Q 015457          176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS  255 (406)
Q Consensus       176 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  255 (406)
                      ..+++|+.|+++++.+...  ..+..+++|+.|+++++.+.....  +..+++|+.|++++|.++..  ..+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            3567888888888877544  236678888888888888776544  77888888888888887763  23777888888


Q ss_pred             EECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457          256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  335 (406)
Q Consensus       256 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (406)
                      |++++|.+...  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++| .
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~  189 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H  189 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-c
Confidence            88888888774  4567788888888888888765  456778888888888888877644  777888888888888 5


Q ss_pred             CChhHHHHHHcCCCccEEEeeCCccCh
Q 015457          336 LTDKTLELISGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~  362 (406)
                      +....  .+..+++|+.|++++|++..
T Consensus       190 i~~l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDLR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCCh--hhccCCCCCEEECcCCcccC
Confidence            66542  36778888888888887765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.7e-17  Score=139.13  Aligned_cols=168  Identities=29%  Similarity=0.373  Sum_probs=131.0

Q ss_pred             cCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcE
Q 015457          152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  231 (406)
Q Consensus       152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  231 (406)
                      ..+++|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            3567788888888877643  246778888888888888766544  77888888888888887664  34778888888


Q ss_pred             EeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCC
Q 015457          232 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  311 (406)
Q Consensus       232 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  311 (406)
                      |++++|.++..  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.++...+  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            88888887764  3567788888888888888875  567788888888888888877544  77888888888888888


Q ss_pred             ChHHHHhhhcCCCCCEEeccCC
Q 015457          312 TDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      ++.  ..+..+++|+.|++++|
T Consensus       191 ~~l--~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          191 SDL--RALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CBC--GGGTTCTTCSEEEEEEE
T ss_pred             CCC--hhhccCCCCCEEECcCC
Confidence            775  24777888888888888

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=3.2e-18  Score=149.40  Aligned_cols=218  Identities=14%  Similarity=0.115  Sum_probs=114.1

Q ss_pred             CCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc----CCchhHHhhcCCCCC
Q 015457          154 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----VGSSGLRHLSGLTNL  229 (406)
Q Consensus       154 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~l~~~~~L  229 (406)
                      +++|+.+++.. .+......+|..+++|+.+.+.++.+......++..+.++..+......    ........+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            45555555544 3433334445555555555555554444444444444444444333211    011111223334444


Q ss_pred             c-EEeccCCCCChhHHHHhh---CCCCCcEEECCCCCCChHHHHHH-hcCCCCCEEEccCCCCChhHHHHhhcCCCCCEE
Q 015457          230 E-SINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  304 (406)
Q Consensus       230 ~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  304 (406)
                      + .+.+....  ......+.   ...++..+.+.+. +.......+ ..+++|+.+++++|.++..+..+|..+++|+++
T Consensus       179 ~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            4 33332221  11111111   2345555555543 222222222 236677777777766666666667777777777


Q ss_pred             EccCCCCChHHHHhhhcCCCCC-EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEE
Q 015457          305 EICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT  378 (406)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~  378 (406)
                      ++.++ +...+...|..|++|+ .+.+.+  .+.......+.+|++|+.+++.++.++.+...+|.++++|+.++
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77665 5555556666777777 777766  35555556666777777777777777666666777777777665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=8.2e-18  Score=135.33  Aligned_cols=151  Identities=21%  Similarity=0.297  Sum_probs=81.1

Q ss_pred             CCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEc
Q 015457          227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  306 (406)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  306 (406)
                      ++|+.|+++++.+++..  .+..+++|++|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            34444444444444321  244445555555555544332  24445555666666666555544444555666666666


Q ss_pred             cCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCC
Q 015457          307 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  385 (406)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~  385 (406)
                      ++|.+++..+..+..+++|+.|++++|..+....  .+..+++|+.|++++|.+++..  .+..+++|+.|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            6666665555555666666666666662143332  3556666666666666666533  4556666777777766654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.8e-17  Score=144.70  Aligned_cols=102  Identities=20%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             CCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCC-EEEccCCCCChhHHHHhhcCCCCCEE
Q 015457          226 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLRSL  304 (406)
Q Consensus       226 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  304 (406)
                      +++|+.++++++.++......|.++++|+++.+.++ ++..+..+|..+++|+ .+.+.+ .++.....+|..|++|+++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            455555555555555544455555666666666554 4444445566666666 666665 5555555566666777777


Q ss_pred             EccCCCCChHHHHhhhcCCCCCEEe
Q 015457          305 EICGGGLTDAGVKHIKDLSSLTLLN  329 (406)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~L~~L~  329 (406)
                      ++.++.+.......|..|++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            7766666666666666677777665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=8.2e-17  Score=150.64  Aligned_cols=175  Identities=26%  Similarity=0.318  Sum_probs=136.6

Q ss_pred             cCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcE
Q 015457          176 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS  255 (406)
Q Consensus       176 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  255 (406)
                      ..+++|+.|++.++.+....  .+..+++|+.|++++|.+.....  +..+++|+.|++++|.+...  ..+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            45678888999888775542  46778899999999988876544  77888999999998888763  25777888999


Q ss_pred             EECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCC
Q 015457          256 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  335 (406)
Q Consensus       256 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (406)
                      |++++|.+...  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|++| .
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~  186 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H  186 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence            99988888874  4577888888888888888765  457788888888888888887644  777888888888888 5


Q ss_pred             CChhHHHHHHcCCCccEEEeeCCccChhHH
Q 015457          336 LTDKTLELISGLTGLVSLNVSNSRITSAGL  365 (406)
Q Consensus       336 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  365 (406)
                      +...  ..+..+++|+.|++++|++.....
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            6654  347778888888888888766443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=3.7e-16  Score=125.63  Aligned_cols=151  Identities=21%  Similarity=0.256  Sum_probs=78.8

Q ss_pred             CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457           81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  160 (406)
Q Consensus        81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  160 (406)
                      .+++|++|+++++.+....  .+..+++|++|++++|.+...  ..+..+++|++|++++|.+....+..++.+++|+.|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            4455555555555554322  355555556666655544332  244555566666666655554445555555666666


Q ss_pred             EecCCccchhHHhhhcCCCCCCeEEccCCC-CChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCC
Q 015457          161 NLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI  239 (406)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  239 (406)
                      ++++|.+....+..+..+++|++|++++|. +....  .+..+++|+.|++++|.+....  .+..+++|+.|++++|.+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            666665554445555556666666666654 43321  3445555555555555544322  344455555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=5.4e-17  Score=151.85  Aligned_cols=173  Identities=28%  Similarity=0.361  Sum_probs=141.3

Q ss_pred             ccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCc
Q 015457          151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  230 (406)
Q Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~  230 (406)
                      +..+++|+.|+++++.+... + .+..+++|+.|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence            34567888999998887642 3 47788999999999998876554  77899999999999988764  3678889999


Q ss_pred             EEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCC
Q 015457          231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  310 (406)
Q Consensus       231 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  310 (406)
                      .|++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            999999988764  3577889999999999988875  567888999999999999887655  7889999999999999


Q ss_pred             CChHHHHhhhcCCCCCEEeccCCCCCCh
Q 015457          311 LTDAGVKHIKDLSSLTLLNLSQNCNLTD  338 (406)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (406)
                      +.+.  ..+..+++|+.|++++| .+..
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N-~l~~  211 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQ-ECLN  211 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred             CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence            8875  35788899999999988 4443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=1.1e-16  Score=130.13  Aligned_cols=152  Identities=22%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      ++|++|+++++.+.......+.++++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34455555555444333333444555555555555544443333444555555555555554433334445555555555


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  241 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  241 (406)
                      ++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.       +.+++|+.|++..+.++.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence            555554333333445555555555555554433333444555555555555432       233445555544444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=5.2e-17  Score=131.95  Aligned_cols=158  Identities=20%  Similarity=0.116  Sum_probs=68.9

Q ss_pred             CccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEecc
Q 015457          156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  235 (406)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  235 (406)
                      ++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|+++++.+.......+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            33444444443332222233334444444444444333322233334444444444444433333333444444444444


Q ss_pred             CCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHH
Q 015457          236 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  315 (406)
Q Consensus       236 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  315 (406)
                      +|.++......+..+++|+.|++++|.++..+...+..+++|+.|++++|.+..       .+++|+.|+++.|.+++..
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence            444443333334444555555555555444333334445555555555554432       2445555555555555444


Q ss_pred             HHhhh
Q 015457          316 VKHIK  320 (406)
Q Consensus       316 ~~~~~  320 (406)
                      +..++
T Consensus       182 p~~~~  186 (208)
T 2o6s_A          182 RNSAG  186 (208)
T ss_dssp             BCTTS
T ss_pred             eccCc
Confidence            44443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=2e-16  Score=139.26  Aligned_cols=221  Identities=16%  Similarity=0.094  Sum_probs=147.6

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEE-EeccCccChhHHHhhhcCCCCCEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~l~~L~~L  112 (406)
                      +++++|++++|........+|.++++|++|++++|...+......+.++++++++ .+.++.+....+..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            5788888888775433334678888888888888765554555567777777664 445677776666777888888888


Q ss_pred             EecCCCCChhhHHHHhcCCCCcEEEcCC-ccCChhhhhhccCC-CCccEEEecCCccchhHHhhhcCCCCCCeEEccC-C
Q 015457          113 NLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-C  189 (406)
Q Consensus       113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~  189 (406)
                      ++++|.+....+..+....++..+++.+ +.+.......|..+ ..++.|++++|.+....+. .....+|+.+.+.+ +
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCC
Confidence            8888877765444445556677777755 44555445555555 3578888888888743333 33456788888864 5


Q ss_pred             CCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHHHHhhCCCCCcEEECCC
Q 015457          190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA  260 (406)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~  260 (406)
                      .++......+..+++|+.|++++|.+.......   +.+|+.|.+.++ .+.. .+ .+..+++|+.+++..
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~-lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK-LP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC-CC-CTTTCCSCCEEECSC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc-CC-CchhCcChhhCcCCC
Confidence            565555566778888888888888877654433   456666665444 2222 22 356778888888865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=4.2e-17  Score=144.11  Aligned_cols=176  Identities=21%  Similarity=0.237  Sum_probs=119.6

Q ss_pred             CeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhc-CCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCC
Q 015457          182 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA  260 (406)
Q Consensus       182 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  260 (406)
                      +.++++++.+...+ ..+  .+.++.|++++|.+.......+. .+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            46777776664432 221  24577888888887766655565 777888888888877776666677777888888888


Q ss_pred             CCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhh---hcCCCCCEEeccCCCCCC
Q 015457          261 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLT  337 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  337 (406)
                      |.++......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++......+   ..+++|+.|++++| .+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence            77777655566777777778877777776666667777777777777777776544444   45677777777777 566


Q ss_pred             hhHHHHHHcCCC--ccEEEeeCCccC
Q 015457          338 DKTLELISGLTG--LVSLNVSNSRIT  361 (406)
Q Consensus       338 ~~~~~~l~~~~~--L~~L~l~~~~~~  361 (406)
                      ......+..++.  ++.|++.+|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            655566666665  366777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=1.3e-16  Score=130.51  Aligned_cols=152  Identities=19%  Similarity=0.283  Sum_probs=84.9

Q ss_pred             CEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHH-HHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccC
Q 015457          206 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG  284 (406)
Q Consensus       206 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (406)
                      +.++++++.+...+ ..+  .+.++.|++++|.++...+ ..+..+++|+.|++++|.++......+..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            45666666554432 111  2345666666666655422 2345566666666666666655444555566666666666


Q ss_pred             CCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       285 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                      |.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6665555555555666666666666665554455555566666666665 455444455555556666666655543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.62  E-value=2.1e-15  Score=123.29  Aligned_cols=132  Identities=21%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             CccEEeecCCCCcCcC-ccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEE
Q 015457           59 KLESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  137 (406)
Q Consensus        59 ~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  137 (406)
                      .+++|+++++. ++.. ....+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus        33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            34566666543 2222 223345566666666666665554444555666666666666666555555555566666666


Q ss_pred             cCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      +++|.+....+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            666665555555555556666666666655544455555556666666665544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=1.8e-15  Score=123.66  Aligned_cols=131  Identities=18%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      ++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            34444444444333333333444444444444444443333344444444444444444443333333444444444444


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCc
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ  214 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  214 (406)
                      +|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            444443333344444444444444444433333334444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=1.7e-15  Score=123.84  Aligned_cols=133  Identities=18%  Similarity=0.214  Sum_probs=91.6

Q ss_pred             CCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEE
Q 015457           58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  137 (406)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  137 (406)
                      ++|+.|+++++ .+.......+..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            56777777764 34444445666777777777777777666566677777777777777777765555566677777777


Q ss_pred             cCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      +++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.+++.+|.+
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            777777766666677777777777777777655555566677777777777755

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=8.5e-16  Score=135.18  Aligned_cols=221  Identities=18%  Similarity=0.120  Sum_probs=150.1

Q ss_pred             CCccEEeecCCCCcCcCccccccCCCCccEEEeccCccCh-hHHHhhhcCCCCCE-EEecCCCCChhhHHHHhcCCCCcE
Q 015457           58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLFY  135 (406)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~  135 (406)
                      +++++|+++++ .++......+..+++|++|++++|.+.+ .....|.+++++.. +.+.++.+....+..+..+++|++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            57888888874 4565556677888888888888887644 33455777777665 455667777776777888888888


Q ss_pred             EEcCCccCChhhhhhccCCCCccEEEecC-CccchhHHhhhcCC-CCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCC-
Q 015457          136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-  212 (406)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-  212 (406)
                      +++++|.+....+..+....++..+++.. +.+....+..+..+ ..++.|++++|.++......+ ...+|+.+.+.+ 
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~  187 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence            88888887765555555566777788765 34543334444444 357788888888865544333 345788888864 


Q ss_pred             CcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCC-CCChHHHHHHhcCCCCCEEEccCC
Q 015457          213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGA  285 (406)
Q Consensus       213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~  285 (406)
                      +.+.......++.+++|+.|++++|.++....   ..+.+|+.|.+.++ .+...  ..+..+++|+.+++.++
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~l~~l--P~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARSTYNLKKL--PTLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTTCCCC--CCTTTCCSCCEEECSCH
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccCh---hhhccchHhhhccCCCcCcC--CCchhCcChhhCcCCCC
Confidence            56666655667788888888888888776433   23566777776554 33332  24567788888887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=1.7e-16  Score=133.46  Aligned_cols=170  Identities=24%  Similarity=0.301  Sum_probs=132.5

Q ss_pred             CCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEE
Q 015457          178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN  257 (406)
Q Consensus       178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  257 (406)
                      +.++..+++.++.+....  .+..+++|+.|+++++.+....  .++.+++|+.|++++|.+++..+  +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            345566677777665443  4567889999999999887653  57788999999999998887554  78899999999


Q ss_pred             CCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCC
Q 015457          258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT  337 (406)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (406)
                      +++|.++..+  .+.. ++|+.|++++|.++..  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++| .+.
T Consensus        92 L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N-~i~  163 (263)
T 1xeu_A           92 VNRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGN-EIT  163 (263)
T ss_dssp             CCSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTS-CCC
T ss_pred             CCCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCC-cCc
Confidence            9999888743  2333 7899999999988874  2477889999999999988876  25778899999999998 666


Q ss_pred             hhHHHHHHcCCCccEEEeeCCccChh
Q 015457          338 DKTLELISGLTGLVSLNVSNSRITSA  363 (406)
Q Consensus       338 ~~~~~~l~~~~~L~~L~l~~~~~~~~  363 (406)
                      ..  ..+..+++|+.|++++|++...
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccCC
Confidence            55  5577888899999999887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.61  E-value=2.5e-16  Score=129.65  Aligned_cols=152  Identities=24%  Similarity=0.228  Sum_probs=93.9

Q ss_pred             CCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccC
Q 015457          205 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG  284 (406)
Q Consensus       205 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (406)
                      .+.++.+++.+...+.   .-.++|+.|++++|.++...+..+..+++|+.|++++|.+...+...+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4556666665544321   1236677777777777665555566677777777777776665445556666777777777


Q ss_pred             CCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          285 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       285 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                      |.++...+..+..+++|++|++++|.+... +..+..+++|+.|++++| .+.......+..+++|+.|++.+|++.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            766655555556666677777766666643 444556666666666666 555444445556666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=2.1e-15  Score=133.23  Aligned_cols=176  Identities=21%  Similarity=0.181  Sum_probs=111.9

Q ss_pred             cEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHh-cCCCCcEEEcCCccCChhhhhhccCCCCccEEEecC
Q 015457           86 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF  164 (406)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (406)
                      +.++.+++.+...+. .+  .+.++.|++++|.+....+..+. .+++|++|++++|.+....+..|..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            466776666654321 11  23577788888877776555555 677788888877777766666677777777777777


Q ss_pred             CccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhh---cCCCCCcEEeccCCCCCh
Q 015457          165 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL---SGLTNLESINLSFTGISD  241 (406)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~  241 (406)
                      |.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+   ..+++|+.|++++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            77765555566777777777777777766655666667777777777776665444444   345666666666666655


Q ss_pred             hHHHHhhCCCC--CcEEECCCCCCC
Q 015457          242 GSLRKLAGLSS--LKSLNLDARQIT  264 (406)
Q Consensus       242 ~~~~~l~~~~~--L~~L~l~~~~~~  264 (406)
                      .....+..++.  ++.|++.+|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44444444444  245555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=127.80  Aligned_cols=185  Identities=22%  Similarity=0.283  Sum_probs=136.5

Q ss_pred             CCCCCEEEcCCCcCCchhHHhhc-----CCCCCcEEeccCCCCChhHHHHhh-CCCCCcEEECCCCCCChHHHHHHh---
Q 015457          202 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT---  272 (406)
Q Consensus       202 ~~~L~~l~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~---  272 (406)
                      .+.|+.++++++.++......+.     .+++|+.|++++|.+++.....+. .+++|+.|++++|.++......+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46799999999998876555443     237899999999999876555544 357899999999999887655543   


Q ss_pred             --cCCCCCEEEccCCCCChhHHHH----hhcCCCCCEEEccCCCCChHHHH----hhhcCCCCCEEeccCCCCCChhHHH
Q 015457          273 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQNCNLTDKTLE  342 (406)
Q Consensus       273 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~  342 (406)
                        ..++|++|++++|.+++.....    +..+++|++|++++|.+.+.+..    .+..+++|+.|++++| .+.+....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence              4678999999999987654433    46788999999999999876643    4556789999999999 77775543


Q ss_pred             ----HHHcCCCccEEEeeCCccChhHHHhcCCC---C--CccEEE--ccCCCCChh
Q 015457          343 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN  387 (406)
Q Consensus       343 ----~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~--~L~~l~--l~~~~~~~~  387 (406)
                          .+...++|+.|++++|.+++.....+...   .  .|+.+.  +.++.+++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence                34467899999999999988777666322   2  277777  777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=2.1e-15  Score=139.64  Aligned_cols=135  Identities=17%  Similarity=0.130  Sum_probs=71.0

Q ss_pred             CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457          108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  187 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  187 (406)
                      +++.|+++++.+.+. |..+  .++|++|++++|.+.. .+   ..+++|+.|++++|.+.. +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            666777766666552 3322  2566666666666653 22   334666666666666653 333 322  66666666


Q ss_pred             CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCCh
Q 015457          188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD  265 (406)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  265 (406)
                      +|.++....    .+++|+.|++++|.+.....    .+++|+.|++++|.++....  +.  ++|+.|++++|.++.
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence            665544222    34556666666665543221    34555555555555544211  22  455555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=1.8e-15  Score=139.97  Aligned_cols=187  Identities=19%  Similarity=0.120  Sum_probs=118.7

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      .+++.|+++++.+.+.+ ..+  .++|+.|++++|.+... |   ..+++|++|++++|.+.. .+. +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~lp-~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSCCC-SCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCccC-HhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            37888888887776532 222  36788888888877753 4   456788888888887776 333 443  7888888


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  242 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  242 (406)
                      ++|.+.+ +|.   .+++|+.|++++|.++....    .+++|+.|++++|.+...+.  +.  ++|+.|++++|.++..
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence            8887764 333   56778888888887765322    46778888888887766433  43  7788888888877642


Q ss_pred             HHHHhhCCCCC-------cEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhc
Q 015457          243 SLRKLAGLSSL-------KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  297 (406)
Q Consensus       243 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  297 (406)
                      ..  +..  +|       +.|++++|.++..+ ..+..+++|+.|++++|.+++..+..+..
T Consensus       196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          196 PA--VPV--RNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC--CC----------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh--HHH--hhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            22  222  44       66666666666542 23334566666666666666555554433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=4.3e-16  Score=131.05  Aligned_cols=164  Identities=24%  Similarity=0.337  Sum_probs=132.7

Q ss_pred             CCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEec
Q 015457          155 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  234 (406)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  234 (406)
                      .++..++++.+.+.+..  .+..+++|+.|++++|.+....  .+..+++|+.|++++|.+.....  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            45566667777766422  4567789999999999886543  57788999999999999887654  788999999999


Q ss_pred             cCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChH
Q 015457          235 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  314 (406)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  314 (406)
                      ++|.++....  +.. ++|+.|++++|.++..  ..+..+++|+.|++++|.+++..  .+..+++|+.|++++|.+.+.
T Consensus        93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence            9998876322  333 8999999999999885  45788999999999999998753  578899999999999999886


Q ss_pred             HHHhhhcCCCCCEEeccCC
Q 015457          315 GVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~  333 (406)
                        ..+..+++|+.|++++|
T Consensus       166 --~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCC
Confidence              56788899999999998

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.59  E-value=3e-14  Score=125.56  Aligned_cols=185  Identities=23%  Similarity=0.348  Sum_probs=138.7

Q ss_pred             CCCCCeEEccCCCCChhhhHhhhC-----CCCCCEEEcCCCcCCchhHHhhc-CCCCCcEEeccCCCCChhHHHHhh---
Q 015457          178 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA---  248 (406)
Q Consensus       178 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~---  248 (406)
                      .+.|+.+++++|.++......+..     .++|+.|++++|.++......+. .+++|+.|++++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467999999999988765555433     26899999999998776554443 457899999999999886665553   


Q ss_pred             --CCCCCcEEECCCCCCChHHHHH----HhcCCCCCEEEccCCCCChhH----HHHhhcCCCCCEEEccCCCCChHHHHh
Q 015457          249 --GLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH  318 (406)
Q Consensus       249 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~  318 (406)
                        ..++|++|++++|.++..+...    +..+++|++|++++|.+++.+    ...+..+++|++|++++|.+++.+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              4688999999999998755443    467889999999999998755    344567889999999999999876554


Q ss_pred             h----hcCCCCCEEeccCCCCCChhHHHHHHcCC--C---ccEEE--eeCCccChh
Q 015457          319 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSA  363 (406)
Q Consensus       319 ~----~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~---L~~L~--l~~~~~~~~  363 (406)
                      +    ..+++|++|++++| .+.......+..+.  .   ++.+.  +.++.+.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            4    45799999999999 78888877776542  2   66666  666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=8.2e-15  Score=120.58  Aligned_cols=132  Identities=23%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      ++|++|++++|.+....+..+.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            55666666666665554555556666666666666655544444555666666666666655544445555566666666


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcC
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV  215 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  215 (406)
                      ++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.+++.+|.+
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            666555 3444455556666666666655544444445555555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=5.9e-15  Score=131.33  Aligned_cols=266  Identities=12%  Similarity=0.149  Sum_probs=146.2

Q ss_pred             CCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457           82 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN  161 (406)
Q Consensus        82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  161 (406)
                      +..++.+.+... +......+|.++ +|+.+.+..+ +.......|.+ .+|+.+.+.. .+.......|..+++|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            355555555432 222333444443 4666665443 33333334444 3466666654 34444445566666666666


Q ss_pred             ecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCCh
Q 015457          162 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD  241 (406)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  241 (406)
                      +..+.+.......|. ..+|+.+.+..+ +......++..+++|+.+.+..+ +.......+.. .+|+.+.+. +.++.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence            665555533333443 356666666533 44445555666666666666543 33333344444 456666663 23444


Q ss_pred             hHHHHhhCCCCCcEEECCCCCCC-----hHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHH
Q 015457          242 GSLRKLAGLSSLKSLNLDARQIT-----DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV  316 (406)
Q Consensus       242 ~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  316 (406)
                      .....|.++++|+.+.+.++...     ..+..++..|++|+.+.+.. .++.....+|..|++|+.+.+..+ ++....
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            44455566666666666655443     23345666677777777763 455555666677777777777543 555555


Q ss_pred             HhhhcCCCCCEEeccCCCCCChhHHHHHHcCC-CccEEEeeCCccC
Q 015457          317 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSRIT  361 (406)
Q Consensus       317 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~  361 (406)
                      ..|..| +|+.+.+.++ .........+.+++ +++.|.+..+.+.
T Consensus       340 ~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHH
Confidence            566677 7777777776 44444444455553 5677777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=2e-15  Score=134.32  Aligned_cols=268  Identities=14%  Similarity=0.133  Sum_probs=202.4

Q ss_pred             hcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCe
Q 015457          104 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES  183 (406)
Q Consensus       104 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  183 (406)
                      ..+..++.+.+.+. +.......|..+ +|+.+.+..+ +.......|.. .+|+.+.+.. .+......+|..+++|+.
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            34567788877653 455445566664 7999998765 56566667776 4699999876 455455677888999999


Q ss_pred             EEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCC
Q 015457          184 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI  263 (406)
Q Consensus       184 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  263 (406)
                      +.+..+.+.......+. ..+|+.+.+..+ +.......+..|++|+.+.+..+ ++......|.+ .+|+.+.+. +.+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            99998888776666665 588999999754 66666778889999999999764 55544555655 789999994 446


Q ss_pred             ChHHHHHHhcCCCCCEEEccCCCCC-----hhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCCh
Q 015457          264 TDTGLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  338 (406)
Q Consensus       264 ~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (406)
                      +..+..++..|++|+.+.+.++...     .....+|..|++|+.+.+.+ .+...+...|..|++|+.+.+.++  +..
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~  336 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQ  336 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccE
Confidence            6666678889999999999887654     45566788899999999984 477776778888999999999765  666


Q ss_pred             hHHHHHHcCCCccEEEeeCCccChhHHHhcCCCC-CccEEEccCCCCC
Q 015457          339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVT  385 (406)
Q Consensus       339 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~l~l~~~~~~  385 (406)
                      .....+.++ +|+.+++.++.........|.+++ +++.+.+..+.+.
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            667778888 999999999987766666777774 6888988876544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=2.3e-15  Score=134.74  Aligned_cols=334  Identities=18%  Similarity=0.182  Sum_probs=210.1

Q ss_pred             CHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHh
Q 015457           23 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY  102 (406)
Q Consensus        23 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  102 (406)
                      +.+...+|.+|.+|+.+.+... ....+..+|.+|++|+.+++..+  ++......+..|++|+.+.+..+ +......+
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            4455566777888888887643 22223446777888888887643  44444556667777777665433 22233344


Q ss_pred             hhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCC
Q 015457          103 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE  182 (406)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  182 (406)
                      |.++..++......  ........|..+.+|+.+.+..+. .......|..+.+|+.+.+..+ +......++..+..|+
T Consensus       136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            55554333222222  222223456777888888876532 3344556777777877777654 3323345566777777


Q ss_pred             eEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCC
Q 015457          183 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ  262 (406)
Q Consensus       183 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  262 (406)
                      .+.+..+.. .... .......|+.+.+.... .......+..+..++.+.+..+. .......+..+..++.+......
T Consensus       212 ~i~~~~~~~-~i~~-~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          212 NMEFPNSLY-YLGD-FALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI  287 (394)
T ss_dssp             BCCCCTTCC-EECT-TTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE
T ss_pred             eeecCCCce-Eeeh-hhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee
Confidence            777765422 1111 22234677777775432 33334456677888888886553 22333445667788887776654


Q ss_pred             CChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHH
Q 015457          263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE  342 (406)
Q Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  342 (406)
                      +..   ..+..+.+|+.+.+..+ ++..+..++..+.+|+++++.++ ++..+...|..|.+|+.+.+..+  +......
T Consensus       288 i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~  360 (394)
T 4fs7_A          288 VPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN  360 (394)
T ss_dssp             ECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT
T ss_pred             ecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH
Confidence            333   45667888998888654 55556667888899999998754 66666677888999999999765  6666677


Q ss_pred             HHHcCCCccEEEeeCCccChhHHHhcCCCCCccEE
Q 015457          343 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL  377 (406)
Q Consensus       343 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l  377 (406)
                      .+.+|++|+.+++..+- ... ..+|.+|++|+.+
T Consensus       361 aF~~C~~L~~i~lp~~~-~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPKRL-EQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEGGG-GGG-GGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECCCC-EEh-hheecCCCCCcEE
Confidence            78899999999997652 222 3578889988876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=1.6e-15  Score=135.71  Aligned_cols=332  Identities=14%  Similarity=0.131  Sum_probs=234.2

Q ss_pred             ccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhc
Q 015457           50 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA  129 (406)
Q Consensus        50 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  129 (406)
                      +..+|.+|.+|+.+.+..  .++......+.+|++|+.+.+..+ +......+|.++..|+.+.+..+ +.......|..
T Consensus        63 g~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             CTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             HHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            445788999999999974  366666778889999999999754 44455567888899988776543 33333445555


Q ss_pred             CCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEE
Q 015457          130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE  209 (406)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  209 (406)
                      +..++......  ........|..+++|+.+.+..+. .......|..+.+|+.+.+..+ +.......+..+..|+.+.
T Consensus       139 ~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          139 CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             ccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            54433333222  223345678888999999997653 2244567788899999999765 5555666778888898887


Q ss_pred             cCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCCh
Q 015457          210 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD  289 (406)
Q Consensus       210 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  289 (406)
                      +..+....  ......+.+|+.+.+... ++......+..+..++.+.+..+. .......+..+..++.+......+. 
T Consensus       215 ~~~~~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~-  289 (394)
T 4fs7_A          215 FPNSLYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP-  289 (394)
T ss_dssp             CCTTCCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC-
T ss_pred             cCCCceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec-
Confidence            76554221  122334578999888653 333334456678999999997653 2333456677888998887765443 


Q ss_pred             hHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcC
Q 015457          290 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK  369 (406)
Q Consensus       290 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  369 (406)
                        ...+..+.+|+++.+.++ +...+...|..|.+|+.+++.++  +.......+.+|.+|+.+++..+ ++.+...+|.
T Consensus       290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence              345678899999999764 56666677889999999999764  67667778889999999999876 7777778999


Q ss_pred             CCCCccEEEccCCCCChhhHHHHhhcCCCCccccC
Q 015457          370 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  404 (406)
Q Consensus       370 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~  404 (406)
                      +|++|+.+++..+ +....   ..-.+|++|+.+|
T Consensus       364 ~C~~L~~i~lp~~-~~~~~---~~F~~c~~L~~IK  394 (394)
T 4fs7_A          364 GCINLKKVELPKR-LEQYR---YDFEDTTKFKWIK  394 (394)
T ss_dssp             TCTTCCEEEEEGG-GGGGG---GGBCTTCEEEEEC
T ss_pred             CCCCCCEEEECCC-CEEhh---heecCCCCCcEEC
Confidence            9999999999764 22211   2345888888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=3e-15  Score=117.05  Aligned_cols=134  Identities=25%  Similarity=0.241  Sum_probs=90.1

Q ss_pred             CCCCcEEECCCCCCC-hHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEE
Q 015457          250 LSSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  328 (406)
Q Consensus       250 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  328 (406)
                      .++|++|++++|.+. +..+..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356666666666665 11123345566777777777776654  456667777777777777776545555667788888


Q ss_pred             eccCCCCCChh-HHHHHHcCCCccEEEeeCCccChhHH---HhcCCCCCccEEEccCCCCCh
Q 015457          329 NLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       329 ~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ++++| .+... ....+..+++|+.|++++|+++....   ..+..+++|+.|++++|.+.+
T Consensus       101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            88877 55553 23566677888888888888776544   466778888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=2e-16  Score=147.19  Aligned_cols=193  Identities=15%  Similarity=0.123  Sum_probs=108.5

Q ss_pred             cCCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCc
Q 015457            6 SGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL   85 (406)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L   85 (406)
                      ..+++|+.|+++++..  ...|..+..+++|+.|+++++......+..+      +.++      .....+..+..+++|
T Consensus       346 ~~~~~L~~L~Ls~n~L--~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~~~------~~~~~~~~l~~l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLM------RALD------PLLYEKETLQYFSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------HHHC------TGGGHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhH--HhhHHHHHHHHHHHHhccccchhhhhHHHHH------Hhcc------cccCCHHHHHHHHhc
Confidence            5678888888888863  3457778888888888886653111110000      0000      111223334444555


Q ss_pred             cEEE-eccCccChhHHH-----hhhc--CCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCc
Q 015457           86 KSLQ-ISCSKVTDSGIA-----YLKG--LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL  157 (406)
Q Consensus        86 ~~L~-l~~~~~~~~~~~-----~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  157 (406)
                      +.|+ ++.+.+......     .+..  ...|+.|++++|.+++. |. +..+++|+.|++++|.+. ..|..++.+++|
T Consensus       412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  488 (567)
T 1dce_A          412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL  488 (567)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             ccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence            5554 333222111100     0111  12467777777766663 33 666777777777777666 345566667777


Q ss_pred             cEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhh-hHhhhCCCCCCEEEcCCCcCCc
Q 015457          158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGS  217 (406)
Q Consensus       158 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~  217 (406)
                      +.|++++|.+.+ +| .+..+++|+.|++++|.++... +..+..+++|+.|++++|.+..
T Consensus       489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            777777776664 34 5666677777777777665554 5556666666666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=5.4e-14  Score=109.87  Aligned_cols=131  Identities=24%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             CCCcEeeccCcccc-cCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEE
Q 015457           34 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        34 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  112 (406)
                      ++|++|++++|... ...+..+..+++|++|++++|. ++..  ..+..+++|++|++++|.+.                
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~----------------   84 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIF----------------   84 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCC----------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCc----------------
Confidence            55666666665532 1222334455555555555543 2222  34444555555555555444                


Q ss_pred             EecCCCCChhhHHHHhcCCCCcEEEcCCccCChhh-hhhccCCCCccEEEecCCccchhHH---hhhcCCCCCCeEEccC
Q 015457          113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEITDECL---VHLKGLTNLESLNLDS  188 (406)
Q Consensus       113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~  188 (406)
                              ...+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+....+   ..+..+++|++|++.+
T Consensus        85 --------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           85 --------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             --------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             --------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence                    333333334444444444444444321 1344445555555555554443222   2444555555555555


Q ss_pred             CCC
Q 015457          189 CGI  191 (406)
Q Consensus       189 ~~~  191 (406)
                      |..
T Consensus       157 n~~  159 (168)
T 2ell_A          157 RED  159 (168)
T ss_dssp             TTS
T ss_pred             CCh
Confidence            543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=6.3e-14  Score=107.10  Aligned_cols=107  Identities=23%  Similarity=0.242  Sum_probs=45.8

Q ss_pred             CCCcEeeccCcccc-cCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEE
Q 015457           34 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        34 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  112 (406)
                      ++|++|++++|... ...+..+..+++|++|++++|. ++..  ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45555555555432 1223334445555555555432 2221  334444444555444444443333333344444444


Q ss_pred             EecCCCCChh-hHHHHhcCCCCcEEEcCCccC
Q 015457          113 NLEGCPVTAA-CLDSLSALGSLFYLNLNRCQL  143 (406)
Q Consensus       113 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~  143 (406)
                      ++++|.+... .+..+..+++|++|++++|.+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            4444444432 113333344444444444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=5.6e-14  Score=107.43  Aligned_cols=63  Identities=29%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChh-HHHHhhcCCCCCEEEccCCCC
Q 015457          249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGL  311 (406)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  311 (406)
                      .+++|+.|++++|.+....+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+
T Consensus        62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            333444444444433332222333334444444444444332 112333344444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=9e-16  Score=142.79  Aligned_cols=122  Identities=20%  Similarity=0.218  Sum_probs=91.8

Q ss_pred             CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECC
Q 015457          180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  259 (406)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  259 (406)
                      .|+.|++++|.++.. +. +..+++|+.|++++|.+... +..++.+++|+.|++++|.++.. + .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence            578888888877654 32 77788888888888887743 45677888888888888888763 3 67788888888888


Q ss_pred             CCCCChHH-HHHHhcCCCCCEEEccCCCCChhHH---HHhhcCCCCCEEEc
Q 015457          260 ARQITDTG-LAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLEI  306 (406)
Q Consensus       260 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l  306 (406)
                      +|.+++.. +..+..+++|+.|++++|.++...+   ..+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888765 5677888888888888888765432   23455788888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=2.8e-14  Score=112.31  Aligned_cols=108  Identities=18%  Similarity=0.229  Sum_probs=53.8

Q ss_pred             CCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHH-HHHHcCCCccEEE
Q 015457          276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLN  354 (406)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~  354 (406)
                      +|+.|++++|.++..  ..+..+++|++|++++|.++...+..+..+++|+.|++++| .+..... ..+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence            455555555544432  23444555555555555555443233345555555555555 3333221 2444555566666


Q ss_pred             eeCCccChhHHH---hcCCCCCccEEEccCCCCCh
Q 015457          355 VSNSRITSAGLR---HLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       355 l~~~~~~~~~~~---~l~~~~~L~~l~l~~~~~~~  386 (406)
                      +++|++......   .+..+++|+.+++++|...+
T Consensus       120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            666655432221   34455666666666665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=1.6e-13  Score=108.24  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=70.0

Q ss_pred             CcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccC
Q 015457          229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  308 (406)
Q Consensus       229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  308 (406)
                      .+.++++++.++....   ...++|++|++++|.++......+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3455565555544221   1235666666666666654444455556666666666666554444455556666666666


Q ss_pred             CCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          309 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                      |.+++..+..+..+++|+.|++++| .+.......+..+++|+.|++++|++.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence            6655544444455556666666555 444443333445555555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=9.3e-13  Score=105.07  Aligned_cols=109  Identities=21%  Similarity=0.204  Sum_probs=56.6

Q ss_pred             CccEEEeccCccChhHHH-hhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           84 NLKSLQISCSKVTDSGIA-YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      ++++|++++|.+....+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            444555554444433322 2445555555555555555544445555555555555555555444444555555555555


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCCC
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGIG  192 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (406)
                      ++|.+....|..+..+++|++|++++|.+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            555555444555555555556655555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=7.1e-13  Score=105.77  Aligned_cols=129  Identities=18%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             cEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccc-cccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEec
Q 015457           37 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE  115 (406)
Q Consensus        37 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  115 (406)
                      ++++++++.. ...+..+.  ++|++|+++++. ++..... .+..+++|++|++++|.+....+..+.++++|++|+++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCc-CcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            5677766553 33333332  377778887753 3433332 46677788888888777776666677777788888888


Q ss_pred             CCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch
Q 015457          116 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD  169 (406)
Q Consensus       116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  169 (406)
                      +|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            887777666667777788888888877777667777777778888887776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=2.2e-13  Score=107.19  Aligned_cols=133  Identities=19%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             CCCCCcEEeccCCCCChhHHHHhhC-CCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCE
Q 015457          225 GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS  303 (406)
Q Consensus       225 ~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  303 (406)
                      .+++|+.|++++|.++.. + .+.. .++|+.|++++|.+++.  ..+..+++|+.|++++|.++...+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            345555555555555432 1 1222 23666666666666553  34555666666666666666544444456677777


Q ss_pred             EEccCCCCChHHH-HhhhcCCCCCEEeccCCCCCChhHH---HHHHcCCCccEEEeeCCccCh
Q 015457          304 LEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS  362 (406)
Q Consensus       304 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~  362 (406)
                      |++++|.+..... ..+..+++|+.|++++| .+.....   ..+..+++|+.|++++|...+
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7777776655432 25566777777777777 3433222   146677777777777777544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.39  E-value=1.3e-13  Score=110.07  Aligned_cols=126  Identities=22%  Similarity=0.243  Sum_probs=77.9

Q ss_pred             cEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCC
Q 015457          230 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  309 (406)
Q Consensus       230 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  309 (406)
                      +.++++++.++... ..  -.+++++|++++|.++..+ ..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666655422 11  1356777777777666543 45666667777777777766655555666667777777776


Q ss_pred             CCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCcc
Q 015457          310 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  360 (406)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  360 (406)
                      .++...+..|..+++|+.|++++| .+.......+..+++|+.|++++|++
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence            666665555666666666666666 55554444555666666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=3.8e-15  Score=119.76  Aligned_cols=133  Identities=23%  Similarity=0.257  Sum_probs=99.1

Q ss_pred             HhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCC
Q 015457          246 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL  325 (406)
Q Consensus       246 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  325 (406)
                      .+..+++|++|++++|.+...+  .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+.+. + .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-S-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence            6677788888888888777743  666778888888888887753 33455567888999988888875 2 57778889


Q ss_pred             CEEeccCCCCCChhH-HHHHHcCCCccEEEeeCCccChhHH----------HhcCCCCCccEEEccCCCCCh
Q 015457          326 TLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL----------RHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       326 ~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~----------~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      +.|++++| .+.... ...+..+++|+.|++++|++.+..+          ..+..+++|+.|+  +++++.
T Consensus       118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999988 566543 3577888999999999998766433          2367788899886  666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=3.1e-12  Score=114.34  Aligned_cols=314  Identities=16%  Similarity=0.158  Sum_probs=147.0

Q ss_pred             ccCCC-CccEEeecCCCCcCcCccccccCCCCccEEEeccCc---cChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhc
Q 015457           54 LKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK---VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA  129 (406)
Q Consensus        54 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  129 (406)
                      |.++. .|+.+.+..  .++......|.+|.+|+.+.+..+.   +......+|.++..|+.+.+..+ +.......+..
T Consensus        59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            44443 355555543  2344444455555666665554331   33333344555555555544332 22222334455


Q ss_pred             CCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEE
Q 015457          130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE  209 (406)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  209 (406)
                      +.+|+.+.+... ........|..+..|+.+.+..+ +......+|.. ..|+.+.+... .......++..+..+....
T Consensus       136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~  211 (394)
T 4gt6_A          136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTIT  211 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             hcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceec
Confidence            556666665432 22233344555555555555433 11122223322 34555555443 2223334444555555554


Q ss_pred             cCCCcCCchhHHh-------------hcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCC
Q 015457          210 LSDTQVGSSGLRH-------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG  276 (406)
Q Consensus       210 l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  276 (406)
                      .............             ......+..+.+.. .+.......+.++..|+.+.+... +...+..++..++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~  289 (394)
T 4gt6_A          212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPA  289 (394)
T ss_dssp             ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccc
Confidence            4433221111000             01112233333321 122222334556667777776543 22223345566677


Q ss_pred             CCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457          277 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  356 (406)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  356 (406)
                      |+.+.+. +.++.....+|..|.+|+++.+.++ ++..+...|..|.+|+.+.+.++  +.......+.+|++|+.+++.
T Consensus       290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEES
T ss_pred             cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEEC
Confidence            7777764 3444445556666777777777643 44444556666777777777553  555555566677777777777


Q ss_pred             CCccChhHHHhcCCCCCccEEEccCCC
Q 015457          357 NSRITSAGLRHLKPLKNLRSLTLESCK  383 (406)
Q Consensus       357 ~~~~~~~~~~~l~~~~~L~~l~l~~~~  383 (406)
                      ++..   ...++..+.+|+.+.+..+.
T Consensus       366 ~~~~---~~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          366 GSRS---QWNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             SCHH---HHHTCBCCCCC---------
T ss_pred             Ccee---ehhhhhccCCCCEEEeCCCC
Confidence            6542   12355566667776665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=3.1e-12  Score=101.95  Aligned_cols=108  Identities=21%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      ++|++|++++|.+...+ ..+.++++|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            35555555555554322 44555555555555555555554445555555566666555555554455555555555555


Q ss_pred             cCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          163 GFNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      ++|.+....+..+..+++|+.+++.+|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55555543333455555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=4.1e-12  Score=100.00  Aligned_cols=108  Identities=21%  Similarity=0.194  Sum_probs=46.2

Q ss_pred             CccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEec
Q 015457           84 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG  163 (406)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  163 (406)
                      +|++|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44444444444433333333444444444444444443333333444444444444444443333334444444444444


Q ss_pred             CCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          164 FNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      +|.+....+..+..+++|+++++++|.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            4444432223334444444444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.33  E-value=1e-11  Score=110.94  Aligned_cols=313  Identities=18%  Similarity=0.156  Sum_probs=190.7

Q ss_pred             ccCC-CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcc---cccCccccccCCCCccEEeecCCCCcCcCcccccc
Q 015457            5 LSGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS   80 (406)
Q Consensus         5 ~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   80 (406)
                      |.++ ..|+.+.+...  ++.+...+|.+|.+|+.+.+..+.   ....+..+|..|.+|+.+.+...  ++......+.
T Consensus        59 F~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~  134 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH  134 (394)
T ss_dssp             TTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred             ccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence            5556 35888888654  556666778888888888876542   11223345777778877777542  4444556677


Q ss_pred             CCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEE
Q 015457           81 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  160 (406)
Q Consensus        81 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  160 (406)
                      .+.+|+.+.+... +.......+..+..|+.+.+..+ +.......|. ..+|+.+.+.... .......|..+..++..
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTI  210 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhcccccee
Confidence            7888888887643 23334456677788888877654 3332233343 3567777776532 22334455566666666


Q ss_pred             EecCCccchhHHh-------------hhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCC
Q 015457          161 NLGFNEITDECLV-------------HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT  227 (406)
Q Consensus       161 ~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  227 (406)
                      .............             .+.....+..+.+... +......++..+..|+.+.+.... .......+..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~  288 (394)
T 4gt6_A          211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCP  288 (394)
T ss_dssp             EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCT
T ss_pred             cccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccccc-ceecCccccccc
Confidence            5543322100000             0011223334444322 223345567778889998886543 334456677889


Q ss_pred             CCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEcc
Q 015457          228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  307 (406)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  307 (406)
                      .|+.+.+.. .++......|.++.+|+++.+..+ ++..+..+|..|.+|+.+.+..+ ++..+..+|..|++|+++++.
T Consensus       289 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          289 ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred             ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence            999998853 455555567788999999999764 55555678888999999999653 666667788999999999998


Q ss_pred             CCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          308 GGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      ++..   ....+..+.+|+.+.+..+
T Consensus       366 ~~~~---~~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          366 GSRS---QWNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             SCHH---HHHTCBCCCCC--------
T ss_pred             Ccee---ehhhhhccCCCCEEEeCCC
Confidence            8642   2345666788888887665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=3.4e-13  Score=129.48  Aligned_cols=112  Identities=20%  Similarity=0.146  Sum_probs=52.0

Q ss_pred             ccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCcc
Q 015457           79 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK  158 (406)
Q Consensus        79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  158 (406)
                      +..+++|+.|++++|.+... +..+..+++|++|++++|.+.. .|..+..+++|++|++++|.+. ..|..+..+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            34445555555555444422 2223344555555555554442 2444445555555555555544 2344444455555


Q ss_pred             EEEecCCccchhHHhhhcCCCCCCeEEccCCCCChh
Q 015457          159 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE  194 (406)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  194 (406)
                      +|++++|.+. .+|..+..+++|+.|++++|.+...
T Consensus       297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence            5555555444 3344444555555555555554433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=4e-13  Score=128.98  Aligned_cols=120  Identities=19%  Similarity=0.170  Sum_probs=73.1

Q ss_pred             HHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCC
Q 015457          100 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT  179 (406)
Q Consensus       100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  179 (406)
                      +..+..++.|+.|++++|.+... +..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+. .+|..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            44556666777777777766543 444556677777777777666 44555666677777777777666 4466666667


Q ss_pred             CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhh
Q 015457          180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL  223 (406)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l  223 (406)
                      +|++|++++|.++.. +..+..+++|+.|++++|.+....+..+
T Consensus       294 ~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            777777777666533 3346666667777777666665544444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.25  E-value=4.5e-13  Score=107.62  Aligned_cols=137  Identities=18%  Similarity=0.172  Sum_probs=74.7

Q ss_pred             HHHhcCCCCcEeeccCcccccCccc------cccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHH
Q 015457           28 KAFAGLINLVKLDLERCTRIHGGLV------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA  101 (406)
Q Consensus        28 ~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  101 (406)
                      ..+.....++.++++++......+.      .+..+++|++|++++|. +....  .+..+++|++|++++|.+... +.
T Consensus        12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~   87 (198)
T 1ds9_A           12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRNLIKKI-EN   87 (198)
T ss_dssp             HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEEEECSC-SS
T ss_pred             HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCCCcccc-cc
Confidence            3455566666666655442222121      45556666666666543 33221  455566666666666665532 23


Q ss_pred             hhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhh-hhccCCCCccEEEecCCccchh
Q 015457          102 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDE  170 (406)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~  170 (406)
                      .+..+++|+.|++++|.+... + .+..+++|++|++++|.+..... ..+..+++|+.|++++|.+...
T Consensus        88 ~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           88 LDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             hhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            344455666666666666553 2 45556666666666666654322 3455666666666666655443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.25  E-value=2.6e-11  Score=92.87  Aligned_cols=101  Identities=20%  Similarity=0.395  Sum_probs=72.3

Q ss_pred             CCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcC----CCccEEEeeCCc-cChhHHHhcCCCCCc
Q 015457          300 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSR-ITSAGLRHLKPLKNL  374 (406)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~l~~~~~L  374 (406)
                      .|++|++++|.+++.+...+..|++|+.|+|++|..+++.....++.+    ++|++|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            577777777777777777777778888888888877777777777654    468888888875 777777777778888


Q ss_pred             cEEEccCCC-CChhhH--HHHhhcCCCCcc
Q 015457          375 RSLTLESCK-VTANDI--KRLQSRDLPNLV  401 (406)
Q Consensus       375 ~~l~l~~~~-~~~~~~--~~~~~~~~~~l~  401 (406)
                      +.|++++|+ ++..+.  ..+ ...+|+++
T Consensus       142 ~~L~L~~c~~Itd~gl~~~~L-~~~lP~l~  170 (176)
T 3e4g_A          142 KYLFLSDLPGVKEKEKIVQAF-KTSLPSLE  170 (176)
T ss_dssp             CEEEEESCTTCCCHHHHHHHH-HHHCTTCE
T ss_pred             CEEECCCCCCCCchHHHHHHH-HHHCCCcE
Confidence            888888886 555442  333 34667665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.16  E-value=3.6e-10  Score=98.70  Aligned_cols=200  Identities=19%  Similarity=0.217  Sum_probs=121.2

Q ss_pred             CCCCCeEEccCCCCCh-h---h----hHhhhCCCCCCEEEcCCCcCC---------chhHHhhcCCCCCcEEeccCCCCC
Q 015457          178 LTNLESLNLDSCGIGD-E---G----LVNLTGLCNLKCLELSDTQVG---------SSGLRHLSGLTNLESINLSFTGIS  240 (406)
Q Consensus       178 ~~~L~~L~l~~~~~~~-~---~----~~~~~~~~~L~~l~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~  240 (406)
                      ...++.|.+....... .   .    ......+++|+.|.+......         ......+..+|+|+.|.++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3456777776443321 1   1    112345688999988654321         112344567788888888776211


Q ss_pred             hhHHHHhhCCCCCcEEECCCCCCChHHHHHHh--cCCCCCEEEccCC--CC-Chh----HHHHh--hcCCCCCEEEccCC
Q 015457          241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGA--RI-TDS----GAAYL--RNFKNLRSLEICGG  309 (406)
Q Consensus       241 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~~----~~~~~--~~~~~L~~L~l~~~  309 (406)
                      ...  .+ ..++|++|.+..+.+.......+.  .+|+|++|+++.+  .. ...    ....+  ..+|+|+.|++.+|
T Consensus       186 ~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 SIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             BCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             eec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence            111  12 267888888888887776655554  6788888887531  11 110    00112  24678888888888


Q ss_pred             CCChHHHHhhh---cCCCCCEEeccCCCCCChhHHHHH----HcCCCccEEEeeCCccChhHHHhcCC-CCCccEEEccC
Q 015457          310 GLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLES  381 (406)
Q Consensus       310 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~l~l~~  381 (406)
                      .+.+.....+.   .+|+|++|+|+.| .+.+.....+    ..+++|+.|++++|.+++...+.+.. +  ...+++++
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~  339 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD  339 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence            87765444433   4678888888877 6776554443    34678888888888887776666643 2  34577777


Q ss_pred             CC
Q 015457          382 CK  383 (406)
Q Consensus       382 ~~  383 (406)
                      ++
T Consensus       340 ~~  341 (362)
T 2ra8_A          340 SQ  341 (362)
T ss_dssp             BC
T ss_pred             Cc
Confidence            66

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.16  E-value=1.4e-11  Score=95.96  Aligned_cols=105  Identities=18%  Similarity=0.220  Sum_probs=60.2

Q ss_pred             CcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccC
Q 015457          253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  332 (406)
Q Consensus       253 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  332 (406)
                      .+.++++++.++..+. .+  .++|+.|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3566666666655321 11  25566666666666655555555666666666666666655444455566666666666


Q ss_pred             CCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          333 NCNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                      | .+....+..+..+++|+.|++++|++.
T Consensus        88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6 455444444555566666666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.14  E-value=8.6e-11  Score=90.01  Aligned_cols=87  Identities=16%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             CCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCC-CChHHHHhhhcC----CCCCEEeccCCCCCChhHHHHHHcCCCc
Q 015457          276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDL----SSLTLLNLSQNCNLTDKTLELISGLTGL  350 (406)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~l~~~~~L  350 (406)
                      .|+.|++++|.+++.+...+..+++|++|++++|. +++.+...+...    ++|+.|++++|..+++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45666666666666555555666666666666663 666655555542    4567777777666666666666666777


Q ss_pred             cEEEeeCCc-cCh
Q 015457          351 VSLNVSNSR-ITS  362 (406)
Q Consensus       351 ~~L~l~~~~-~~~  362 (406)
                      +.|++++|+ +++
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            777777765 444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.12  E-value=1.6e-10  Score=102.72  Aligned_cols=303  Identities=14%  Similarity=0.120  Sum_probs=174.9

Q ss_pred             HhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCC
Q 015457           30 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL  109 (406)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (406)
                      +....+|+.+.+... ....+..+|.+|.+|+.+++...  ++......+..+ +|+.+.+..+ +......+|..+ +|
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            455667888877652 22333456777888888888642  444555566665 5666665432 222333344443 67


Q ss_pred             CEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccch------------hHHhhhcC
Q 015457          110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD------------ECLVHLKG  177 (406)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~  177 (406)
                      +.+.+... +.......+.. .+++.+.+... +.......+.....++...+.......            .....+..
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             ccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            77777553 22222222332 34555555432 222333445555666666554332110            01111223


Q ss_pred             CCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEE
Q 015457          178 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN  257 (406)
Q Consensus       178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  257 (406)
                      ...+..+.+... ........+..+..++.+.+... +.......+..+..|+.+.+..+ ++......+.++.+|+.+.
T Consensus       193 ~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          193 AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            344555555433 22233344555677777777543 33344455667788888887654 4444455566778888888


Q ss_pred             CCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCC
Q 015457          258 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT  337 (406)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (406)
                      +... +...+..++..+.+|+.+.+.++.++.....+|..|.+|+++.+..+ ++..+...|..|.+|+.+.+..+  +.
T Consensus       270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~  345 (379)
T 4h09_A          270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS--IT  345 (379)
T ss_dssp             ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT--CC
T ss_pred             cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cC
Confidence            7653 44444466777888888888887777766777888888888888653 55555667888888888888654  55


Q ss_pred             hhHHHHHHcCC
Q 015457          338 DKTLELISGLT  348 (406)
Q Consensus       338 ~~~~~~l~~~~  348 (406)
                      ......+.++.
T Consensus       346 ~I~~~aF~~c~  356 (379)
T 4h09_A          346 LIESGAFEGSS  356 (379)
T ss_dssp             EECTTTTTTSS
T ss_pred             EEchhHhhCCC
Confidence            54455555553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=2.2e-11  Score=95.24  Aligned_cols=104  Identities=20%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             cEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       254 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      +.++++++.++..+. .+  .++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            566777776665432 11  256777777777776665666666777777777777776654444566677777777776


Q ss_pred             CCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          334 CNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                       .+....+..+..+++|+.|++++|++.
T Consensus        92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence             555554444666667777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.10  E-value=1.1e-09  Score=95.62  Aligned_cols=178  Identities=20%  Similarity=0.263  Sum_probs=121.1

Q ss_pred             hcCCCCCCeEEccCCCCC---------hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHH
Q 015457          175 LKGLTNLESLNLDSCGIG---------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR  245 (406)
Q Consensus       175 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  245 (406)
                      ...+++|+.|.+.+....         ......+..+|.|+.|.+.++.-... . .+ ..++|+.|++..+.++.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHHH
Confidence            445688999988654221         11234456788999999987631111 1 12 268999999988888876666


Q ss_pred             Hhh--CCCCCcEEECCC--CC------CChHHHHHH--hcCCCCCEEEccCCCCChhHHHHhh---cCCCCCEEEccCCC
Q 015457          246 KLA--GLSSLKSLNLDA--RQ------ITDTGLAAL--TSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGG  310 (406)
Q Consensus       246 ~l~--~~~~L~~L~l~~--~~------~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~  310 (406)
                      .+.  .+|+|+.|.++.  +.      +.... ..+  ..+++|+.|.+.+|.+.+.....+.   .+++|++|+++.|.
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            665  689999998742  11      11110 111  2478999999999988765544443   47889999999999


Q ss_pred             CChHHHHhh----hcCCCCCEEeccCCCCCChhHHHHHHc-CCCccEEEeeCCc
Q 015457          311 LTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSR  359 (406)
Q Consensus       311 ~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~  359 (406)
                      +.+.+...+    ..+++|+.|++++| .+.+.....+.. +  ...+++++++
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence            888765444    45689999999988 688777777764 3  4567888776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.08  E-value=3.4e-10  Score=100.70  Aligned_cols=306  Identities=14%  Similarity=0.092  Sum_probs=182.1

Q ss_pred             ccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCC
Q 015457           52 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG  131 (406)
Q Consensus        52 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  131 (406)
                      +++....+|+.+.+..  .++......|.+|.+|+.+.+..+ +......+|.++ +|+.+.+..+ +.......+.. .
T Consensus        40 ~~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-T  113 (379)
T ss_dssp             TTGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-C
T ss_pred             cccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-C
Confidence            3455677899999974  466666778889999999999644 454555667776 5777776543 33333334443 4


Q ss_pred             CCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhh------------hHhh
Q 015457          132 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG------------LVNL  199 (406)
Q Consensus       132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------~~~~  199 (406)
                      +|+.+.+... +.......|... .++...+..+ +.......+..+..++.+.+.........            ...+
T Consensus       114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            7888888754 222333344433 4555555432 22223344566677777776544221110            1112


Q ss_pred             hCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCE
Q 015457          200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH  279 (406)
Q Consensus       200 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  279 (406)
                      .....+..+.+.... .......+..+.+++.+.+... +.......+.++..|+.+.+..+ ++..+..++..+.+|+.
T Consensus       191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            223444555444322 1222334455677777777543 33333445566778888887654 44444456667777888


Q ss_pred             EEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457          280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  359 (406)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  359 (406)
                      +.+..+ +.......+..+++|+++.+.++.++..+...|..|.+|+.+.+.++  +.......+.+|.+|+.+.+..+ 
T Consensus       268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-  343 (379)
T 4h09_A          268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-  343 (379)
T ss_dssp             EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred             cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-
Confidence            877543 44445556777788888888777777666667777888888888654  55555566777777877777543 


Q ss_pred             cChhHHHhcCCCCC
Q 015457          360 ITSAGLRHLKPLKN  373 (406)
Q Consensus       360 ~~~~~~~~l~~~~~  373 (406)
                      ++.+...+|.++..
T Consensus       344 v~~I~~~aF~~c~~  357 (379)
T 4h09_A          344 ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCEECTTTTTTSSC
T ss_pred             cCEEchhHhhCCCC
Confidence            45444556655543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=3.6e-10  Score=87.99  Aligned_cols=85  Identities=25%  Similarity=0.202  Sum_probs=45.8

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      ++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            45555555555555444444555555555555555555544444455555555555555555444444555555555555


Q ss_pred             cCCcc
Q 015457          163 GFNEI  167 (406)
Q Consensus       163 ~~~~~  167 (406)
                      ++|.+
T Consensus       110 ~~N~~  114 (170)
T 3g39_A          110 LNNPW  114 (170)
T ss_dssp             CSSCB
T ss_pred             CCCCC
Confidence            55544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=6.5e-10  Score=86.82  Aligned_cols=85  Identities=22%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             CCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEe
Q 015457           83 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  162 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  162 (406)
                      ++|++|++++|.+....+..+.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            44555555555554444444455555555555555554443333444555555555555544433333444455555555


Q ss_pred             cCCcc
Q 015457          163 GFNEI  167 (406)
Q Consensus       163 ~~~~~  167 (406)
                      ++|.+
T Consensus       113 ~~N~~  117 (174)
T 2r9u_A          113 YNNPW  117 (174)
T ss_dssp             CSSCB
T ss_pred             CCCCc
Confidence            54443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.98  E-value=9e-09  Score=81.12  Aligned_cols=123  Identities=20%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             HHHhhCCCCCcEEECCCC-CCChHHHHH----HhcCCCCCEEEccCCCCChhHHHH----hhcCCCCCEEEccCCCCChH
Q 015457          244 LRKLAGLSSLKSLNLDAR-QITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDA  314 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~  314 (406)
                      ...+...+.|++|++++| .+...+...    +...+.|++|++++|.+.+.+...    +...++|++|++++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            334445666666666666 665543322    233455556666655555433222    22334455555555555444


Q ss_pred             HHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEe--eCCccChhHHH----hcCCCCCccEEEccCCCCChh
Q 015457          315 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGLR----HLKPLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l--~~~~~~~~~~~----~l~~~~~L~~l~l~~~~~~~~  387 (406)
                      +...+                     ...+...++|++|++  ++|.+++....    .+...++|++|++++|.+...
T Consensus       109 g~~~l---------------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          109 GILAL---------------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHH---------------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHH---------------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            32222                     112223345555555  45555543322    223445566666666665544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.97  E-value=1.4e-08  Score=79.99  Aligned_cols=115  Identities=20%  Similarity=0.154  Sum_probs=85.5

Q ss_pred             hHHhhcCCCCCcEEeccCC-CCChhHHH----HhhCCCCCcEEECCCCCCChHHHH----HHhcCCCCCEEEccCCCCCh
Q 015457          219 GLRHLSGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITD  289 (406)
Q Consensus       219 ~~~~l~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~  289 (406)
                      ....+...++|+.|++++| .+.+....    .+...++|++|++++|.+...+..    .+...+.|++|++++|.+++
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3456678899999999999 99876443    445679999999999999986543    34456899999999999998


Q ss_pred             hHHHH----hhcCCCCCEEEc--cCCCCChHHHHhh----hcCCCCCEEeccCC
Q 015457          290 SGAAY----LRNFKNLRSLEI--CGGGLTDAGVKHI----KDLSSLTLLNLSQN  333 (406)
Q Consensus       290 ~~~~~----~~~~~~L~~L~l--~~~~~~~~~~~~~----~~~~~L~~L~l~~~  333 (406)
                      .+...    +...++|++|++  ++|.+.+.+...+    ...++|+.|++++|
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            65443    455677888888  7777777654433    33466666666666

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=2e-09  Score=94.48  Aligned_cols=102  Identities=25%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             EECCCC-CCChHHHHHHhcCCCCCEEEccC-CCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          256 LNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       256 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      ++.+++ .++..+.  +..+++|+.|++++ |.+....+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455554 5555432  55555566666664 5655554455555666666666666665554555555566666666665


Q ss_pred             CCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          334 CNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                       .+....+..+..++ |+.|++.+|++.
T Consensus        91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 -ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence             44443333333333 555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.78  E-value=1.4e-08  Score=89.02  Aligned_cols=89  Identities=24%  Similarity=0.241  Sum_probs=46.8

Q ss_pred             ccCCCCccEEEecc-CccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCc
Q 015457           79 LSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL  157 (406)
Q Consensus        79 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  157 (406)
                      +..+++|++|++++ |.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+..++ |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            44455555555553 555544444555555555555555555555455555555555555555555544333343333 5


Q ss_pred             cEEEecCCccc
Q 015457          158 KVLNLGFNEIT  168 (406)
Q Consensus       158 ~~L~l~~~~~~  168 (406)
                      +.|++.+|.+.
T Consensus       106 ~~l~l~~N~~~  116 (347)
T 2ifg_A          106 QELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCC
T ss_pred             eEEEeeCCCcc
Confidence            55555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=8.7e-07  Score=73.30  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=16.1

Q ss_pred             CCCCCEEEccCCCCChHH--HHhhhcCCCCCEEeccCC
Q 015457          298 FKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       298 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~  333 (406)
                      +++|++|++++|.+.+..  +..+..+++|+.|+|++|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence            444555555554444421  122334455555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=1.1e-06  Score=72.81  Aligned_cols=83  Identities=24%  Similarity=0.347  Sum_probs=63.6

Q ss_pred             hcCCCCCEEeccCCCCCCh--hHHHHHHcCCCccEEEeeCCccChh-HHHhcCCCCCccEEEccCCCCCh-----hhHHH
Q 015457          320 KDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA-----NDIKR  391 (406)
Q Consensus       320 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~-----~~~~~  391 (406)
                      ..+|+|+.|+|++| .+..  ..+..+..+++|+.|++++|.+.+. ....+..+ +|++|++++|++..     .....
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            46899999999999 7776  3346677899999999999999875 22334444 99999999999985     23444


Q ss_pred             HhhcCCCCccccC
Q 015457          392 LQSRDLPNLVSFR  404 (406)
Q Consensus       392 ~~~~~~~~l~~l~  404 (406)
                      .....+|+|+.|.
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            4456889998774

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.06  E-value=0.0001  Score=57.60  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=41.6

Q ss_pred             hCCCCCcEEECCCC-CCChHHH----HHHhcCCCCCEEEccCCCCChhHHH----HhhcCCCCCEEEccCCCCChHHHHh
Q 015457          248 AGLSSLKSLNLDAR-QITDTGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKH  318 (406)
Q Consensus       248 ~~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~  318 (406)
                      .+-+.|++|+++++ .+...+.    ..+..-..|+.|++++|.+.+.+..    .+..-+.|++|+|++|.+.+.+...
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455555555553 4544332    2223334555555555555543322    2334455566666665555554443


Q ss_pred             h----hcCCCCCEEeccCC
Q 015457          319 I----KDLSSLTLLNLSQN  333 (406)
Q Consensus       319 ~----~~~~~L~~L~l~~~  333 (406)
                      +    .....|+.|+|++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            3    22345556665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.97  E-value=0.0002  Score=55.86  Aligned_cols=117  Identities=15%  Similarity=0.207  Sum_probs=89.1

Q ss_pred             HHHhcCCCCCEEEccCC-CCChhHHH----HhhcCCCCCEEEccCCCCChHHHHhhh----cCCCCCEEeccCCCCCChh
Q 015457          269 AALTSLTGLTHLDLFGA-RITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNLTDK  339 (406)
Q Consensus       269 ~~~~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~  339 (406)
                      ..+..-+.|++|+++++ .+.+.+..    .+..-..|++|++++|.+.+.+...++    ....|+.|+|+.| .+...
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~  113 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPE  113 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHH
Confidence            34456688999999986 88875543    456678999999999999988766554    5689999999999 78887


Q ss_pred             HHHHHH----cCCCccEEEeeCC---ccChhH----HHhcCCCCCccEEEccCCCCCh
Q 015457          340 TLELIS----GLTGLVSLNVSNS---RITSAG----LRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       340 ~~~~l~----~~~~L~~L~l~~~---~~~~~~----~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ....++    .-+.|+.|+++++   .+....    .+++..-++|+.++++.+.+..
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~  171 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA  171 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence            665544    4467999999865   556543    3455667899999999886544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.55  E-value=0.017  Score=41.80  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             EEEccCCCCC--hHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccC
Q 015457          303 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  361 (406)
Q Consensus       303 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  361 (406)
                      .++-+++.++  .. +..+  .++|+.|+|++| .+.......+..+++|+.|++.+|++.
T Consensus        12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554  32 2222  246888888888 677766667777778888888877753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.42  E-value=0.021  Score=41.38  Aligned_cols=56  Identities=20%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             CEEEccCCCCC--hhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCC
Q 015457          278 THLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  336 (406)
Q Consensus       278 ~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (406)
                      ..++.++..++  .. |..  -.++|+.|+|++|.++......|..+++|+.|+|.+|+..
T Consensus        11 ~~v~Cs~~~L~~~~v-P~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASL-PTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTS-CSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccC-CCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777776  33 221  2457999999999999887777888999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 1e-10
 Identities = 75/343 (21%), Positives = 128/343 (37%), Gaps = 31/343 (9%)

Query: 3   ENLSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 62
           + +  L+NLT ++F  N       +     L  LV + +          +     +   +
Sbjct: 60  DGVEYLNNLTQINFSNNQL---TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 116

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-----------KGLQKLTL 111
           L       I             L S  IS         +             K L  LT 
Sbjct: 117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 112 LNLEGCPV-TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 170
           L          + +  L+ L +L  L     Q+S         + +L  L+L  N++ D 
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD- 233

Query: 171 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 230
            +  L  LTNL  L+L +  I    L  L+GL  L  L+L   Q+  S +  L+GLT L 
Sbjct: 234 -IGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQI--SNISPLAGLTALT 288

Query: 231 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 290
           ++ L+   + D S      L +L  L L    I+   ++ ++SLT L  L     +++D 
Sbjct: 289 NLELNENQLEDISPIS--NLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDV 344

Query: 291 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 333
            +  L N  N+  L      ++   +  + +L+ +T L L+  
Sbjct: 345 SS--LANLTNINWLSAGHNQIS--DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 2e-10
 Identities = 76/364 (20%), Positives = 153/364 (42%), Gaps = 32/364 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 62
            + L  +T+L   R    +  G++    L NL +++     ++     L NL  L+ +  
Sbjct: 40  QTDLDQVTTLQADRLGIKSIDGVE---YLNNLTQINFSNN-QLTDITPLKNLTKLVDILM 95

Query: 63  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 122
            N +  +    +++  L+GLT   +       + +        L   T+ ++       +
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155

Query: 123 CLDSLSALGSLFYLNLNRCQ---------LSDDGCEKFSKIGSLKVLNLGFNEITDECLV 173
                          L                      +K+ +L+ L    N+I+D  + 
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--IT 213

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
            L  LTNL+ L+L+   +  + +  L  L NL  L+L++ Q+  S L  LSGLT L  + 
Sbjct: 214 PLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELK 269

Query: 234 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 293
           L    IS+  +  LAGL++L   NL+  +     ++ +++L  LT+L L+   I+D    
Sbjct: 270 LGANQISN--ISPLAGLTALT--NLELNENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 294 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 353
            + +   L+ L      ++   V  + +L+++  L+   N  ++D  L  ++ LT +  L
Sbjct: 325 -VSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHN-QISD--LTPLANLTRITQL 378

Query: 354 NVSN 357
            +++
Sbjct: 379 GLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 6e-09
 Identities = 79/362 (21%), Positives = 144/362 (39%), Gaps = 35/362 (9%)

Query: 33  LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 92
           L  +  L  +R      G+ ++ G+  L +L     +    +D+ PL  LT L  + ++ 
Sbjct: 43  LDQVTTLQADRL-----GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 93  SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD------------SLSALGSLFYLNLNR 140
           +++ D              L            +            ++S + +L  L   +
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 141 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNL 199
                +       + +L  L            + +   LTNLESL   +  I    +  L
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPL 215

Query: 200 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 259
             L NL  L L+  Q+    +  L+ LTNL  ++L+   IS+  L  L+GL+ L  L L 
Sbjct: 216 GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 271

Query: 260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 319
           A QI  + ++ L  LT LT+L+L          + + N KNL  L +    ++   +  +
Sbjct: 272 ANQI--SNISPLAGLTALTNLELN--ENQLEDISPISNLKNLTYLTLYFNNIS--DISPV 325

Query: 320 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 379
             L+ L  L  + N  ++D  +  ++ LT +  L+  +++I+   L  L  L  +  L L
Sbjct: 326 SSLTKLQRLFFA-NNKVSD--VSSLANLTNINWLSAGHNQIS--DLTPLANLTRITQLGL 380

Query: 380 ES 381
             
Sbjct: 381 ND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 62/344 (18%), Positives = 118/344 (34%), Gaps = 46/344 (13%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
           + +   + L       +  + VTD        L ++T L  +   +    +D +  L +L
Sbjct: 13  NQIFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNL 68

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             +N +  QL+         +  L  + +  N+I D   +         +L  +     D
Sbjct: 69  TQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 194 EGLV------------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS- 240
                            ++ +  L  L         + +  L  L NL ++       + 
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 241 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 300
              +  LA L++L+SL     QI  + +  L  LT L  L L G ++ D G   L +  N
Sbjct: 187 VSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQLKDIGT--LASLTN 242

Query: 301 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS--------------- 345
           L  L++    ++   +  +  L+ LT L L  N       L  ++               
Sbjct: 243 LTDLDLANNQIS--NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 346 ----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 385
                L  L  L +  + I+   +  +  L  L+ L   + KV+
Sbjct: 301 SPISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVS 342

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 3e-10
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 156 SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLEL 210
            ++ L++   E++D     L   L   + + LD CG+ +    +++        L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 211 SDTQVGSSGLRHL-----SGLTNLESINLS 235
              ++G  G+  +     +    ++ ++L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 8e-09
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 228 NLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDL 282
           +++S+++    +SD    +L   L   + + LD   +T+       +AL     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 283 FGARITDSGAAYL-----RNFKNLRSLEICG 308
               + D G   +          ++ L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 3e-08
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 204 NLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNL 258
           +++ L++   ++  +    L   L   + + L   G+++   + ++       +L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 259 DARQITDTGLAALTSL-----TGLTHLDLFG 284
            + ++ D G+  +          +  L L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 4e-08
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 32/116 (27%)

Query: 84  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 143
           +++SL I C +++D+  A L                       L  L     + L+ C L
Sbjct: 3   DIQSLDIQCEELSDARWAEL-----------------------LPLLQQCQVVRLDDCGL 39

Query: 144 SDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCG 190
           ++  C+  S       +L  LNL  NE+ D  +  +          ++ L+L +C 
Sbjct: 40  TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 1e-07
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 156 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLK 206
            L+VL L   +++D         L    +L  L+L +  +GD G++ L        C L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 207 CLELSDTQVGSSGLRHLSGL 226
            L L D          L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 3e-07
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 132 SLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEITDECLVHL-----KGLTNLE 182
            L  L L  C +SD  C           SL+ L+L  N + D  ++ L     +    LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 183 SLNLDSCGIGDEGLVNLTGL 202
            L L      +E    L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 174 HLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSG---- 225
             +  + L  L L  C + D    +    L    +L+ L+LS+  +G +G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 226 -LTNLESINLSFTGISDGSLRKLAGLSSLK 254
               LE + L     S+    +L  L   K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 6e-07
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 300 NLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLN 354
           +++SL+I    L+DA    +   L    ++ L  +C LT+   + IS        L  LN
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELN 61

Query: 355 VSNSRITSAGLRHL-----KPLKNLRSLTLESC 382
           + ++ +   G+  +      P   ++ L+L++C
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 277 LTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLS 331
           +  LD+    ++D+  A L    +  + + +   GLT+A  K I    +   +L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 332 QNCNLTDKTLELI-----SGLTGLVSLNVSN 357
            N  L D  +  +     +    +  L++ N
Sbjct: 64  SN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 251 SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNL 301
           S L+ L L    ++D+  +     L +   L  LDL    + D+G   L     +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 302 RSLEICGGGLTDAGVKHIKDL 322
             L +     ++     ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 60  LESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNL 114
           ++SL+I+ C  ++D+    L   L   + +++    +T++        L+    L  LNL
Sbjct: 4   IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 115 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 148
               +    +  +          + +  L +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 222 HLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAALTS---- 273
                + L  + L+   +SD S   LA       SL+ L+L    + D G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 274 -LTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEI 306
               L  L L+    ++     L+   K+  SL +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 101 AYLKGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEKFSKI-- 154
              +    L +L L  C V+ +       +L A  SL  L+L+   L D G  +  +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 155 ---GSLKVLNLGFNEITDECLVHLKGL 178
                L+ L L     ++E    L+ L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 324 SLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLT 378
            +  L++     L+D    EL+  L     + + +  +T A  +     L+    L  L 
Sbjct: 3   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 379 LESCKVTANDIKRL 392
           L S ++    +  +
Sbjct: 62  LRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 318 HIKDLSSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL----- 368
             +  S L +L L+ +C+++D +       +     L  L++SN+ +  AG+  L     
Sbjct: 364 LGQPGSVLRVLWLA-DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 369 KPLKNLRSLTLESCKVTANDIKRLQS--RDLPNL 400
           +P   L  L L     +     RLQ+  +D P+L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 53  NLKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 107
             +    L  L +  C+ ++DS        L    +L+ L +S + + D+GI  L + ++
Sbjct: 364 LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 108 ----KLTLLNLEGCPVTAACLDSLSAL 130
                L  L L     +    D L AL
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 53/282 (18%), Positives = 93/282 (32%), Gaps = 15/282 (5%)

Query: 9   SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 68
            +   L  + N  IT      F  L NL  L L               L+KLE L +   
Sbjct: 31  PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SK 88

Query: 69  NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 128
           N + +   K    L  L+  +   +KV  S    L  +  + L        +     +  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQ 147

Query: 129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 188
            +  L Y+ +    ++           SL  L+L  N+IT      LKGL NL  L L  
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 189 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------G 242
             I      +L    +L+ L L++ ++       L+    ++ + L    IS        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 243 SLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDL 282
                   +S   ++L +  +    +  +    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 41/258 (15%), Positives = 91/258 (35%), Gaps = 11/258 (4%)

Query: 83  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 142
            +   L +  +K+T+      K L+ L  L L    ++     + + L  L  L L++ Q
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 143 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 202
           L +   +    +  L+V      ++       L  +  +E L  +             G+
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149

Query: 203 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 262
             L  + ++DT + +          +L  ++L    I+      L GL++L  L L    
Sbjct: 150 KKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 263 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGV 316
           I+     +L +   L  L L   ++         + K ++ + +    ++          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 317 KHIKDLSSLTLLNLSQNC 334
            +    +S + ++L  N 
Sbjct: 266 GYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 52/276 (18%), Positives = 90/276 (32%), Gaps = 34/276 (12%)

Query: 156 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 215
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q+
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL-----------------------AGLSS 252
                +    L  L       T +       L                        G+  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 253 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 312
           L  + +    IT        S   LT L L G +IT   AA L+   NL  L +    ++
Sbjct: 152 LSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 313 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLR 366
                 + +   L  L+L+ N  L       ++    +  + + N+ I++          
Sbjct: 209 AVDNGSLANTPHLRELHLN-NNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 367 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 402
           +     +   ++L S  V   +I+    R +    +
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 34/258 (13%)

Query: 60  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 119
              L+++  N IT+        L NL +L +  +K++         L KL  L L    +
Sbjct: 33  TALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 120 TA---------------------ACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGS 156
                                        + L  +  + L    L   G E   F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
           L  + +    IT    +      +L  L+LD   I      +L GL NL  L LS   + 
Sbjct: 152 LSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLAA 270
           +     L+   +L  ++L+   +       LA    ++ + L    I+            
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 271 LTSLTGLTHLDLFGARIT 288
            T     + + LF   + 
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 5/162 (3%)

Query: 227 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 286
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 287 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 346
           + +      +  + LR  E     +  +    +  +  + L         +        G
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAFQG 148

Query: 347 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 388
           +  L  + ++++ IT+          +L  L L+  K+T  D
Sbjct: 149 MKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD 187

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 38/243 (15%), Positives = 81/243 (33%), Gaps = 14/243 (5%)

Query: 35  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 94
            ++     R   +   L       +++ +++        +    LS  + L++L +   +
Sbjct: 24  GVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 95  VTDSGIAYLKGLQKLTLLNLEGC--------PVTAACLDSLSALGSLFYLNLNRCQLSDD 146
           ++D  +  L     L  LNL GC            +    L  L   +  +     +   
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 147 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 205
                  I  L +     N    +    ++   NL  L+L     + ++       L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 206 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 264
           + L LS    +    L  L  +  L+++ +    + DG+L+ L    +L  L ++    T
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 259

Query: 265 DTG 267
              
Sbjct: 260 TIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 12/251 (4%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 63
              L +   ++FR   +   Q +        +  +DL         L   L    KL++L
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76

Query: 64  NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 123
           +++    ++D  +  L+  +NL  L +S                   L  L         
Sbjct: 77  SLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135

Query: 124 LDSLSALGSLFYLNLNRCQLSD---------DGCEKFSKIGSLKVLNLGFNEITDECLVH 174
              +    +     + +  LS                     + +       + ++C   
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195

Query: 175 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 233
              L  L+ L+L  C  I  E L+ L  +  LK L++       +       L +L+   
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 255

Query: 234 LSFTGISDGSL 244
             FT I+  ++
Sbjct: 256 SHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 25/302 (8%)

Query: 38  KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 97
            LDL     +H  +     L+    +  +      D  +        ++ + +S S +  
Sbjct: 4   TLDLTGKN-LHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 98  SGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 156
           S +   L    KL  L+LEG  ++   +++L+   +L  LNL+ C    +   +      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS- 119

Query: 157 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 216
                   + + +  L      T        +        +NL+G           T   
Sbjct: 120 -------CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-- 170

Query: 217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 275
                       +         + +   ++   L+ L+ L+L     I    L  L  + 
Sbjct: 171 -----VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 276 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 335
            L  L +FG  + D     L+  + L  L+I     T      I +  +  +  +   C 
Sbjct: 226 TLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGIK--CR 280

Query: 336 LT 337
           LT
Sbjct: 281 LT 282

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 15/260 (5%)

Query: 136 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 195
           L+L    L  D   +    G +       + + D+ L        ++ ++L +  I    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 196 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAG 249
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS             L   + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 250 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLE 305
           L  L              +A       +T L+L G     + +D      R    +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 306 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 365
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 241

Query: 366 RHLKPLKNLRSLTLESCKVT 385
           + LK  + L  L +     T
Sbjct: 242 QLLK--EALPHLQINCSHFT 259

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 16/211 (7%)

Query: 74  SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 133
             +             +    VTD        L  +  +      +    +  +  L ++
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYLPNV 70

Query: 134 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 193
             L LN  +L+D        + +LK L   F +      +                    
Sbjct: 71  TKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 194 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 253
           +    +           ++     + L  L+ L  L   +   + I       LAGL+ L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKL 180

Query: 254 KSLNLDARQITDTGLAALTSLTGLTHLDLFG 284
           ++L L    I+D  L AL  L  L  L+LF 
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 17/204 (8%)

Query: 32  GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 91
                +K +L++ +      V    L  ++ +     +      ++ +  L N+  L ++
Sbjct: 22  AFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 92  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 151
            +K+T   I  L  L+ L  L L+   V                L  N     +      
Sbjct: 77  GNKLT--DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 152 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 211
                    N   +      L  L          L         +V L GL  L+ L LS
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLD--------TLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 212 DTQVGSSGLRHLSGLTNLESINLS 235
              +  S LR L+GL NL+ + L 
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 17/198 (8%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
            NL    +TD   V    L +++ +  ++  I  + +  +  L N+  L L+  ++  + 
Sbjct: 29  DNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKL--TD 82

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
           ++ L+ L NL  + L    + D S  K       K  +L       + +  L  L  L  
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 280 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 339
           L L   +ITD         +  +   +       + +  +  L+ L  L LS+N +++D 
Sbjct: 139 LYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISD- 192

Query: 340 TLELISGLTGLVSLNVSN 357
            L  ++GL  L  L + +
Sbjct: 193 -LRALAGLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 6e-06
 Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
           P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
           L   Q++D    K     +   L+    +            T   +    +      GL 
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 198 NLTGL--------------CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 243
           NL  L                     LS      S L  L+ L+ L ++      ISD  
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-- 187

Query: 244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 282
           +  LA L +L  ++L   QI+D  ++ L + + L  + L
Sbjct: 188 ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 19/228 (8%)

Query: 31  AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 90
             L N +K+   +        V    L  + +L+         + ++ +  L NL  L++
Sbjct: 16  PALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLEL 70

Query: 91  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 150
             +++TD              L+       +A     S                  G   
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 151 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 210
              +          + +     +            L         L  L  L  L  L+ 
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQ----------YLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 211 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 258
            D ++  S +  L+ L NL  ++L    ISD  +  LA  S+L  + L
Sbjct: 181 DDNKI--SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 18/208 (8%)

Query: 5   LSGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 64
            + L  +T+LS       T +G++    LI L   D +         +     ++L    
Sbjct: 37  QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP 96

Query: 65  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 124
           +K  + I                  +  +    + +  L GL  L +L L+   +T    
Sbjct: 97  LKNVSAIAGLQSIK----------TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 146

Query: 125 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 184
            +    G      L+            + +  L  L    N+I+D  +  L  L NL  +
Sbjct: 147 LA----GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEV 200

Query: 185 NLDSCGIGDEGLVNLTGLCNLKCLELSD 212
           +L +  I    +  L    NL  + L++
Sbjct: 201 HLKNNQI--SDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 160 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 219
           +  G + +TD   V    L  + +L+    G+    +  +  L NL  LEL D Q+    
Sbjct: 24  IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79

Query: 220 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 279
                       ++ +            +  +   +           GL+ L  L    +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 280 LDLFGARITD--------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 325
                + +                S    L N   L +L+     ++D  +  +  L +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNL 197

Query: 326 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 357
             ++L  N  ++D  +  ++  + L  + ++N
Sbjct: 198 IEVHLK-NNQISD--VSPLANTSNLFIVTLTN 226

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 20/193 (10%)

Query: 78  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 137
             + L       +  + VTD        L ++T L  +   + +  +D +  L +L  +N
Sbjct: 13  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 68

Query: 138 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 197
            +  QL+D    K        ++N                       N  +     + L 
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 198 NLTGLCNLKCLELSDTQVGS--------------SGLRHLSGLTNLESINLSFTGISDGS 243
           NL  L          + +                + L+ L+ LT LE +++S   +SD  
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-- 186

Query: 244 LRKLAGLSSLKSL 256
           +  LA L++L+SL
Sbjct: 187 ISVLAKLTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 134 FYLNLNRCQLSDDGCEKFSKI------GSLKVLNLGFNEITDECLVHL-----KGLTNLE 182
             L LN C LS  G               L+ L L +NEI  + +  L     + + +L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 183 SLNLDSCGIGDEG 195
            L L+     +E 
Sbjct: 306 FLELNGNRFSEED 318

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 156 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKC 207
           S++  +L  + IT E        L    +++ + L    IG E       N+    +L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 208 LELSDTQ 214
            E SD  
Sbjct: 64  AEFSDIF 70

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 158 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQV 215
           +VL+L   ++T   L HL+ L  +  L+L    +      L  L  L  L+  + +   V
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 265
                        L +  L        +++ L     L  LNL    +  
Sbjct: 59  DGVANLPRLQELLLCNNRLQ----QSAAIQPLVSCPRLVLLNLQGNSLCQ 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.85
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.34
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.2e-24  Score=191.15  Aligned_cols=322  Identities=29%  Similarity=0.359  Sum_probs=176.4

Q ss_pred             CCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEE
Q 015457           33 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        33 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  112 (406)
                      +.+|++|+++++....  .+.+..+++|++|++++|. ++..  ..++++++|++|++++|.+.+..  .+.++++|+.+
T Consensus        43 l~~l~~L~l~~~~I~~--l~gl~~L~nL~~L~Ls~N~-l~~l--~~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ-LTDI--TPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCCC--ccccccCCCCCEEeCcCCc-CCCC--ccccCCccccccccccccccccc--ccccccccccc
Confidence            4567777777665322  2345667777777777653 3332  23667777777777777666432  35667777777


Q ss_pred             EecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhh-------------------ccCCCCccEEEecCCccchhHHh
Q 015457          113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK-------------------FSKIGSLKVLNLGFNEITDECLV  173 (406)
Q Consensus       113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------~~~l~~L~~L~l~~~~~~~~~~~  173 (406)
                      +++++.+.....  ......+.......+.+.......                   +.............+...  ...
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  191 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DIS  191 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCG
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--ccc
Confidence            777666554322  223344444444333322211111                   111122222222222221  122


Q ss_pred             hhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCC
Q 015457          174 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL  253 (406)
Q Consensus       174 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  253 (406)
                      ....+++++.+.+.++.+....+  ....++|+.+++.++.+...  ..+..+++|+.+++.++.+++..  .+..+++|
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L  265 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKL  265 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTC
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccC
Confidence            33455666666666665544322  23455666666666665543  23455666666666666665432  25556666


Q ss_pred             cEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          254 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       254 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      ++++++++.+...  ..+..++.++.+.+.+|.+...  ..+..+++++.|++++|.+++..  .+..+++|++|++++|
T Consensus       266 ~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         266 TELKLGANQISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             SEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSS
T ss_pred             CEeeccCcccCCC--Cccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCC
Confidence            6666666666553  2345566666666666666542  23455666666666666666542  2556666777777666


Q ss_pred             CCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCC
Q 015457          334 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  382 (406)
Q Consensus       334 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~  382 (406)
                       .++...  .+..+++|++|++++|++++..  .+.++++|+.|++++|
T Consensus       340 -~l~~l~--~l~~l~~L~~L~l~~N~l~~l~--~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         340 -KVSDVS--SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CCCCCG--GGGGCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCCE
T ss_pred             -CCCCCh--hHcCCCCCCEEECCCCcCCCCh--hhccCCCCCEeeCCCC
Confidence             454422  3556666777777666666543  2556666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=9.2e-24  Score=187.16  Aligned_cols=324  Identities=28%  Similarity=0.393  Sum_probs=240.7

Q ss_pred             CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457            7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK   86 (406)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   86 (406)
                      .+.+|++|+++++.. +..  +.+..+++|++|++++|... .. ..+.++++|++|++++|.. ..  ...++.+++|+
T Consensus        42 ~l~~l~~L~l~~~~I-~~l--~gl~~L~nL~~L~Ls~N~l~-~l-~~l~~L~~L~~L~L~~n~i-~~--i~~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGI-KSI--DGVEYLNNLTQINFSNNQLT-DI-TPLKNLTKLVDILMNNNQI-AD--ITPLANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCC-CCC--TTGGGCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEECCSSCC-CC--CGGGTTCTTCC
T ss_pred             HhCCCCEEECCCCCC-CCc--cccccCCCCCEEeCcCCcCC-CC-ccccCCccccccccccccc-cc--ccccccccccc
Confidence            456899999999874 332  45788999999999998743 33 3588999999999999754 32  23578999999


Q ss_pred             EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhH-------------------HHHhcCCCCcEEEcCCccCChhh
Q 015457           87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-------------------DSLSALGSLFYLNLNRCQLSDDG  147 (406)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------------~~~~~l~~L~~L~l~~~~~~~~~  147 (406)
                      .|++.++.+.+...  ......+.......+.+.....                   ..+.............+...  .
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  189 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--D  189 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--C
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--c
Confidence            99999888775433  2334445555444332222111                   11122233333333333322  2


Q ss_pred             hhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCC
Q 015457          148 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT  227 (406)
Q Consensus       148 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  227 (406)
                      ...+..+++++.+.++++.+....+  +...++|+.+++.+|.+...  ..+..+++|+.+++.++.+....  .++.++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~  263 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLT  263 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccc
Confidence            3345677899999999998875443  35678999999999987654  35678899999999999887643  477889


Q ss_pred             CCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEcc
Q 015457          228 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  307 (406)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  307 (406)
                      +|+.++++++.+....  .+..++.++.+.+..+.+...  ..+..+++++.+++++|.+++..  .+..+++|++|+++
T Consensus       264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred             cCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence            9999999999887643  367889999999999988874  45778899999999999998753  37889999999999


Q ss_pred             CCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCc
Q 015457          308 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  359 (406)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  359 (406)
                      +|.+++.  ..+..+++|++|++++| .++...+  ++++++|+.|++++|.
T Consensus       338 ~n~l~~l--~~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         338 NNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             SSCCCCC--GGGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCCC--hhHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEeeCCCCc
Confidence            9999875  35888999999999999 6776543  7899999999999873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5e-21  Score=173.52  Aligned_cols=392  Identities=23%  Similarity=0.285  Sum_probs=270.2

Q ss_pred             CCCceeeccCCccCCHHH-HHHHhcCCCCcEeeccCcccccCcc----ccccCCCCccEEeecCCCCcCcCcccccc---
Q 015457            9 SNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGL----VNLKGLMKLESLNIKWCNCITDSDMKPLS---   80 (406)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---   80 (406)
                      ++|+.|+++++. ++... .+.+..++++++|++++|.......    ..+..+++|++|++++|. +++.....+.   
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence            468999998887 55554 4557789999999999997543332    345789999999999864 4432222222   


Q ss_pred             --CCCCccEEEeccCccChhHH----HhhhcCCCCCEEEecCCCCChhhHHHHh-----cCCCCcEEEcCCccCChhh--
Q 015457           81 --GLTNLKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG--  147 (406)
Q Consensus        81 --~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~--  147 (406)
                        ...+|++|++++|.+++...    ..+..+++|++|++++|.+.......+.     ...................  
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence              23589999999999876543    4467789999999999988664333322     1233445555444333221  


Q ss_pred             --hhhccCCCCccEEEecCCccchhH----Hhhh-cCCCCCCeEEccCCCCChhh----hHhhhCCCCCCEEEcCCCcCC
Q 015457          148 --CEKFSKIGSLKVLNLGFNEITDEC----LVHL-KGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       148 --~~~~~~l~~L~~L~l~~~~~~~~~----~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~  216 (406)
                        ...+.....++.+.++.+......    ...+ ........+.+.++......    ...+...+.++.+.+.++...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence              123345578888998887655321    1112 23345677888877654332    233456788999999988764


Q ss_pred             chh-----HHhhcCCCCCcEEeccCCCCChhHH----HHhhCCCCCcEEECCCCCCChHHHHHHh-----cCCCCCEEEc
Q 015457          217 SSG-----LRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLAALT-----SLTGLTHLDL  282 (406)
Q Consensus       217 ~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l  282 (406)
                      ...     .........++.++++++.+.....    ..+...+.++.+++++|.+.......+.     ....|+.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l  319 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  319 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence            432     2233456789999999998876533    3345688999999999998875544332     3468999999


Q ss_pred             cCCCCChhHHHH----hhcCCCCCEEEccCCCCChHHHHhhh-----cCCCCCEEeccCCCCCChhHH----HHHHcCCC
Q 015457          283 FGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQNCNLTDKTL----ELISGLTG  349 (406)
Q Consensus       283 ~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~  349 (406)
                      +++.++......    +...++|++|++++|.+.+.+...+.     ..+.|++|++++| .+++...    ..+..+++
T Consensus       320 ~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~  398 (460)
T d1z7xw1         320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS  398 (460)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred             cccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCC
Confidence            999988755443    45678999999999999876655442     3578999999999 7887544    44567899


Q ss_pred             ccEEEeeCCccChhHHHhc----C-CCCCccEEEccCCCCChhhHHHHh--hcCCCCcccc
Q 015457          350 LVSLNVSNSRITSAGLRHL----K-PLKNLRSLTLESCKVTANDIKRLQ--SRDLPNLVSF  403 (406)
Q Consensus       350 L~~L~l~~~~~~~~~~~~l----~-~~~~L~~l~l~~~~~~~~~~~~~~--~~~~~~l~~l  403 (406)
                      |++|++++|++++.+...+    . +..+|+.+++.++.+.+...+.+.  ....|+|+.+
T Consensus       399 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            9999999999987666544    3 445799999999999986655442  2366777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.3e-22  Score=171.90  Aligned_cols=253  Identities=21%  Similarity=0.226  Sum_probs=146.9

Q ss_pred             CCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEc
Q 015457          107 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  186 (406)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  186 (406)
                      +++++|++++|.++...+..|..+++|++++++++.+....+..|..+++|+.+++++|.+.. +|..  ..+.+..+..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhc
Confidence            456666666666666544456666666666666666665555556666666666666665552 2221  2245555555


Q ss_pred             cCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChH
Q 015457          187 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT  266 (406)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  266 (406)
                      .++.+.......+.....+..+....+......                      .....+..+++|+.+++.++.+...
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~----------------------~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----------------------IENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----------------------BCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccC----------------------CCccccccccccCccccccCCcccc
Confidence            555554444444444444444444443322111                      1112233445555555555554432


Q ss_pred             HHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHc
Q 015457          267 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG  346 (406)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  346 (406)
                      +.   ..+++|++|++++|......+..+..++.++.|++++|.+.+..+..+..+++|++|++++| .+... +..+..
T Consensus       166 ~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l-p~~l~~  240 (305)
T d1xkua_         166 PQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLAD  240 (305)
T ss_dssp             CS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC-CTTTTT
T ss_pred             Cc---ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccccc-cccccc
Confidence            11   12456667777666666555556666677777777777776665666667777777777777 55543 345667


Q ss_pred             CCCccEEEeeCCccChhHHHhc------CCCCCccEEEccCCCCChhhH
Q 015457          347 LTGLVSLNVSNSRITSAGLRHL------KPLKNLRSLTLESCKVTANDI  389 (406)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~~~~l------~~~~~L~~l~l~~~~~~~~~~  389 (406)
                      +++|++|++++|+++......|      ...++|+.+++++|++....+
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~  289 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI  289 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcC
Confidence            7788888888877765443333      345778888888888765443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=2.8e-24  Score=184.63  Aligned_cols=249  Identities=16%  Similarity=0.195  Sum_probs=140.1

Q ss_pred             CCCEEEecCCCCCh--hhHHHHhcCCCCcEEEcCC-ccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeE
Q 015457          108 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  184 (406)
Q Consensus       108 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  184 (406)
                      +++.|+++++.+.+  ..|..++.+++|++|++++ |.+.+..|..++++++|++|++++|.+.+..+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46667777766654  2355666666666666664 44544455556666666666666666555444555555566666


Q ss_pred             EccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCC
Q 015457          185 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  264 (406)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  264 (406)
                      ++.+|.+....+..+..++.++.++++++.+....+..+..+..+                       ++.+.+++|.+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-----------------------~~~l~~~~n~l~  187 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRLT  187 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-----------------------CCEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccc-----------------------cccccccccccc
Confidence            665554433334444555555555555554433333333333332                       244444444444


Q ss_pred             hHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHH
Q 015457          265 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  344 (406)
Q Consensus       265 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  344 (406)
                      +..+..+..+. ...+++.++......+..+..+++++.+++.++.+.+. +..+..+++|+.|++++| .+....|..+
T Consensus       188 ~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N-~l~g~iP~~l  264 (313)
T d1ogqa_         188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGL  264 (313)
T ss_dssp             EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSS-CCEECCCGGG
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccccCccC-eecccCChHH
Confidence            43333333332 33455555555444445555566666666666666554 234555667777777777 5665556666


Q ss_pred             HcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCC
Q 015457          345 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  383 (406)
Q Consensus       345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~  383 (406)
                      +++++|++|++++|++++..| .+.++++|+.+++++|+
T Consensus       265 ~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             hCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            777777777777777665333 34556677777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.6e-23  Score=179.88  Aligned_cols=249  Identities=18%  Similarity=0.145  Sum_probs=175.8

Q ss_pred             CccEEeecCCCCcCc-CccccccCCCCccEEEecc-CccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEE
Q 015457           59 KLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL  136 (406)
Q Consensus        59 ~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  136 (406)
                      +++.|+++++..... ..+..++++++|++|++++ |.+.+..+..+.++++|++|++++|.+.+..+..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            577777777543222 2346677788888888874 56665556667778888888888887777666667777888888


Q ss_pred             EcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCC-CeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcC
Q 015457          137 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL-ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV  215 (406)
Q Consensus       137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  215 (406)
                      ++..|.+....+..+..++.++.+++++|.+.+..|..+..+..+ +.+.+.+|.+....+..+..+. ...+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            888777666666777778888888888877776666666666665 6777777766555555555544 34677777666


Q ss_pred             CchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHh
Q 015457          216 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL  295 (406)
Q Consensus       216 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  295 (406)
                      ....+..+..+++++.+++.++.+.... ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| .+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CS
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-Cc
Confidence            5555666677788888888877766543 346677888888888888876555677788888888888888775444 24


Q ss_pred             hcCCCCCEEEccCCC
Q 015457          296 RNFKNLRSLEICGGG  310 (406)
Q Consensus       296 ~~~~~L~~L~l~~~~  310 (406)
                      ..+++|+.+++.+|+
T Consensus       288 ~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccCCCCCHHHhCCCc
Confidence            566778888888776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2e-21  Score=166.04  Aligned_cols=245  Identities=19%  Similarity=0.201  Sum_probs=167.0

Q ss_pred             CccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEc
Q 015457           59 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  138 (406)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  138 (406)
                      ..++++.++ ..++..+ ..+  .+++++|++++|.++......|.++++|++|+++++.+....+..|..+++|+++++
T Consensus        11 ~~~~~~C~~-~~L~~lP-~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSD-LGLEKVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTT-SCCCSCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecC-CCCCccC-CCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            346666655 2344332 222  378999999999998777778999999999999999999887888999999999999


Q ss_pred             CCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCCh--hhhHhhhCCCCCCEEEcCCCcCC
Q 015457          139 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      ++|.+......   ..+.++.+....+.+....+..+.....+..+....+....  .....+..+++|+.+++.++.+.
T Consensus        87 ~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            99988754322   23678999999988876666667777888888888775432  22345666788888888887765


Q ss_pred             chhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhh
Q 015457          217 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR  296 (406)
Q Consensus       217 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  296 (406)
                      ....   ..+++++.|++.++......+..+..++.++.|.+++|.+.......+..+++|++|++++|.++.. +..+.
T Consensus       164 ~l~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~  239 (305)
T d1xkua_         164 TIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLA  239 (305)
T ss_dssp             SCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTT
T ss_pred             ccCc---ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccc
Confidence            4321   2346677777776666555555555666666666666666655445555556666666666655543 23445


Q ss_pred             cCCCCCEEEccCCCCChH
Q 015457          297 NFKNLRSLEICGGGLTDA  314 (406)
Q Consensus       297 ~~~~L~~L~l~~~~~~~~  314 (406)
                      .+++|+.|++++|+++..
T Consensus       240 ~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TCSSCCEEECCSSCCCCC
T ss_pred             cccCCCEEECCCCccCcc
Confidence            555555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.8e-21  Score=163.16  Aligned_cols=206  Identities=21%  Similarity=0.227  Sum_probs=125.3

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEec-cCccChhHHHhhhcCCCCCEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L  112 (406)
                      +++++|+|++|......+.++.++++|++|+++++ .+.......+..++.++.+... .+.+....+..+.++++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            35666666666543333334666666666666653 3444444445555666666554 333444444556666666666


Q ss_pred             EecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCC
Q 015457          113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG  192 (406)
Q Consensus       113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (406)
                      +++++.+....+..+....+|+.+++.++.+....+..|..+++|+.|++++|.+....+..+..+++|+.+.+.+|.+.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            66666655544445555666666666666666555556666666677777666666555556666667777777766666


Q ss_pred             hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCC
Q 015457          193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  240 (406)
Q Consensus       193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  240 (406)
                      ...+..+..+++|+.++++++.+.......++.+++|+.|++++|.+.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            555566666667777777777666666666666677777777666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-22  Score=169.68  Aligned_cols=203  Identities=21%  Similarity=0.247  Sum_probs=91.5

Q ss_pred             CCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEcc
Q 015457          108 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  187 (406)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  187 (406)
                      .+++|++++|.++...+..|.++++|++++++++.+....+..+...+.++.+....                       
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~-----------------------   89 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD-----------------------   89 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-----------------------
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc-----------------------
Confidence            345555555555444334444455555555555444443333333344444443321                       


Q ss_pred             CCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHH
Q 015457          188 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  267 (406)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  267 (406)
                      .+.+....+..+..+++|+.++++++.........+..+++|+.+++.++.++......+...++|+.|++++|.+...+
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            11222222233333444444444444433322333333444444444444444333333444444555555555444443


Q ss_pred             HHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCC
Q 015457          268 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (406)
                      ...+..+++|+.+++++|+++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            344444555555555555554444444455555555555555555444444555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.1e-19  Score=161.54  Aligned_cols=371  Identities=22%  Similarity=0.223  Sum_probs=255.4

Q ss_pred             cccCCCCCceeeccCCccCCHHH----HHHHhcCCCCcEeeccCcccccCccccc----c-CCCCccEEeecCCCCcCcC
Q 015457            4 NLSGLSNLTSLSFRRNNAITAQG----MKAFAGLINLVKLDLERCTRIHGGLVNL----K-GLMKLESLNIKWCNCITDS   74 (406)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~   74 (406)
                      .+..++++++|+|++|. ++...    ...+..+++|++|++++|.....+...+    . ...+|++|++++|. +++.
T Consensus        22 l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~   99 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGA   99 (460)
T ss_dssp             HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGG
T ss_pred             HHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-cccc
Confidence            35667899999999997 55443    3456789999999999987543333222    2 23589999999975 4543


Q ss_pred             c----cccccCCCCccEEEeccCccChhHHHhhh----c-CCCCCEEEecCCCCChh----hHHHHhcCCCCcEEEcCCc
Q 015457           75 D----MKPLSGLTNLKSLQISCSKVTDSGIAYLK----G-LQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRC  141 (406)
Q Consensus        75 ~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~  141 (406)
                      .    ...+..+++|++|++++|.+.+.....+.    . .................    ....+.....++.+.++++
T Consensus       100 ~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~  179 (460)
T d1z7xw1         100 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  179 (460)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccc
Confidence            3    23456789999999999998765554432    1 12344455544433322    1233456788999999887


Q ss_pred             cCChhhhhh----c-cCCCCccEEEecCCccchh----HHhhhcCCCCCCeEEccCCCCChhh-----hHhhhCCCCCCE
Q 015457          142 QLSDDGCEK----F-SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEG-----LVNLTGLCNLKC  207 (406)
Q Consensus       142 ~~~~~~~~~----~-~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~  207 (406)
                      .........    + ........+....+.....    ....+...+.++.+.+.++......     .........++.
T Consensus       180 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~  259 (460)
T d1z7xw1         180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  259 (460)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccc
Confidence            655432211    1 1224566788877655432    2234456788999999988764322     222334678999


Q ss_pred             EEcCCCcCCchhH----HhhcCCCCCcEEeccCCCCChhHHHHhh-----CCCCCcEEECCCCCCChHHHHH----HhcC
Q 015457          208 LELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDTGLAA----LTSL  274 (406)
Q Consensus       208 l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~----~~~~  274 (406)
                      ++++++.+.....    ..+...+.++.++++++.+++.....+.     ....|+.+.++++.+.......    +...
T Consensus       260 l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~  339 (460)
T d1z7xw1         260 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN  339 (460)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccc
Confidence            9999998765433    2345678999999999998765544432     3568999999999888765443    3466


Q ss_pred             CCCCEEEccCCCCChhHHHHh----h-cCCCCCEEEccCCCCChHHHHh----hhcCCCCCEEeccCCCCCChhHHHHHH
Q 015457          275 TGLTHLDLFGARITDSGAAYL----R-NFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQNCNLTDKTLELIS  345 (406)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~l~  345 (406)
                      ++|++|++++|.+++.+...+    . ..+.|++|++++|.+++.+...    +..+++|++|++++| .++......+.
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~  418 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLV  418 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHH
Confidence            789999999999987544433    2 4678999999999999865544    456799999999999 78876665543


Q ss_pred             -----cCCCccEEEeeCCccChhHHHhc----CCCCCccEE
Q 015457          346 -----GLTGLVSLNVSNSRITSAGLRHL----KPLKNLRSL  377 (406)
Q Consensus       346 -----~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~l  377 (406)
                           ....|+.|++.++.+.+...+.+    ...|+|+++
T Consensus       419 ~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence                 23479999999999887666554    456888776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.1e-19  Score=148.57  Aligned_cols=198  Identities=24%  Similarity=0.296  Sum_probs=110.3

Q ss_pred             CCCCCCeEEccCCCCChhhh-HhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCC-CCChhHHHHh-hCCCCC
Q 015457          177 GLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL-AGLSSL  253 (406)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L  253 (406)
                      ...+|++|+++++.+..... ..+..+++|++|++.++.+.......++.+++|+.|+++++ .+++.....+ ..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34566777776665544332 23455666777777766666555566666666777777664 4554433332 346667


Q ss_pred             cEEECCCC-CCChHHH-HHHh-cCCCCCEEEccCC--CCChhHHHH-hhcCCCCCEEEccCC-CCChHHHHhhhcCCCCC
Q 015457          254 KSLNLDAR-QITDTGL-AALT-SLTGLTHLDLFGA--RITDSGAAY-LRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLT  326 (406)
Q Consensus       254 ~~L~l~~~-~~~~~~~-~~~~-~~~~L~~L~l~~~--~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~  326 (406)
                      ++|++++| .+++... ..+. .++.|+.|+++++  .+++..... ...+++|++|++++| .+++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            77776664 3443322 2222 2356666666664  234332222 345666666666665 35555555566666666


Q ss_pred             EEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhc-CCCCCcc
Q 015457          327 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLR  375 (406)
Q Consensus       327 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~  375 (406)
                      +|++++|..+++.....++++++|+.|++++| +++.....+ ..+|+|+
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            66666665566555555666666666666666 333333333 3355544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.5e-18  Score=142.71  Aligned_cols=249  Identities=19%  Similarity=0.236  Sum_probs=161.9

Q ss_pred             CEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchh-HHhhhcCCCCCCeEEccC
Q 015457          110 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDS  188 (406)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~  188 (406)
                      +.+|++++.+.......+.. .....+.+......... .......+|++|+++++.+... +...+..+++|++|.+.+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            36788877665433333322 23445555544333211 1222446788888888877643 344567788888888888


Q ss_pred             CCCChhhhHhhhCCCCCCEEEcCCC-cCCchhHHh-hcCCCCCcEEeccCC-CCChhHH-HHhh-CCCCCcEEECCCC--
Q 015457          189 CGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRH-LSGLTNLESINLSFT-GISDGSL-RKLA-GLSSLKSLNLDAR--  261 (406)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~-l~~~~~L~~L~l~~~-~~~~~~~-~~l~-~~~~L~~L~l~~~--  261 (406)
                      +.+.......+..+++|+.|+++++ .++...... ...+++|++|++++| .+++... ..+. .+++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            8877777777888888888888875 454443333 346788888888886 4555433 2233 3578888888875  


Q ss_pred             CCChHHHHH-HhcCCCCCEEEccCCC-CChhHHHHhhcCCCCCEEEccCC-CCChHHHHhhhcCCCCCEEeccCCCCCCh
Q 015457          262 QITDTGLAA-LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTD  338 (406)
Q Consensus       262 ~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (406)
                      .+++..... ...+++|++|++++|. +++.....+.++++|++|++++| .+++.....++.+|+|+.|++++|  +.+
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d  238 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD  238 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCH
Confidence            455544433 3567888888888864 66666667778888888888886 577776777788888888888887  343


Q ss_pred             hHHHH-HHcCCCccEEEeeCCccChhHH
Q 015457          339 KTLEL-ISGLTGLVSLNVSNSRITSAGL  365 (406)
Q Consensus       339 ~~~~~-l~~~~~L~~L~l~~~~~~~~~~  365 (406)
                      ..... ...+|+|+   +..+.++....
T Consensus       239 ~~l~~l~~~lp~L~---i~~~~ls~~~~  263 (284)
T d2astb2         239 GTLQLLKEALPHLQ---INCSHFTTIAR  263 (284)
T ss_dssp             TCHHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred             HHHHHHHHhCcccc---ccCccCCCCCC
Confidence            33333 34566654   45555555433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.8e-19  Score=146.28  Aligned_cols=201  Identities=21%  Similarity=0.169  Sum_probs=137.7

Q ss_pred             CCCCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCcc
Q 015457            7 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK   86 (406)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   86 (406)
                      +...+.+++-+++. ++.+ |..+  -+++++|++++|......+..+..+++|++|++++|. ++.  ...++.+++|+
T Consensus         8 ~~~~~~~v~C~~~~-L~~i-P~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~--l~~~~~l~~L~   80 (266)
T d1p9ag_           8 KVASHLEVNCDKRN-LTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTK--LQVDGTLPVLG   80 (266)
T ss_dssp             CSTTCCEEECTTSC-CSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCE--EECCSCCTTCC
T ss_pred             ccCCCeEEEccCCC-CCee-CcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccc-ccc--ccccccccccc
Confidence            44455555655554 3332 2211  1468888888876444334567778888888888753 332  23456778888


Q ss_pred             EEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCc
Q 015457           87 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  166 (406)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (406)
                      +|++++|.+... +..+.++++|+.|+++++.+....+..+..+.+++++.+.+|.+....+..+..+++++.+++++|.
T Consensus        81 ~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            888888877643 3456777888888888887776656666677888888888887776666667777888888888888


Q ss_pred             cchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCC
Q 015457          167 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG  216 (406)
Q Consensus       167 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  216 (406)
                      +....+..+..+++|++|++++|.++. .+..+..+++|+.+++++|...
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCC
Confidence            776666667778888888888887763 3445556778888888877654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.1e-19  Score=149.79  Aligned_cols=199  Identities=24%  Similarity=0.224  Sum_probs=134.0

Q ss_pred             cCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEE
Q 015457          129 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  208 (406)
Q Consensus       129 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  208 (406)
                      ....+..++.+++.++. .|..+.  ++++.|++++|.+....+..|..+++|++|++++|.++...  .++.+++|+.|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            34556667777777664 343332  46888888888887655667778888888888888776432  24567788888


Q ss_pred             EcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCC
Q 015457          209 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  288 (406)
Q Consensus       209 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (406)
                      ++++|.+... ...+..+++|+.|+++++.+.......+..+.+++.|.+++|.+...+...+..+++++.+++++|+++
T Consensus        83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            8887776543 334566777777777777666555555556677777777777776655555566677777777777776


Q ss_pred             hhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCC
Q 015457          289 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  334 (406)
Q Consensus       289 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (406)
                      ...+..+..+++|++|++++|.++.. +..+..+++|+.|++++|+
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred             ccCccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCCC
Confidence            66556666677777777777776643 4445556677777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.1e-17  Score=132.43  Aligned_cols=185  Identities=30%  Similarity=0.396  Sum_probs=90.6

Q ss_pred             CCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEEC
Q 015457          179 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL  258 (406)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  258 (406)
                      .+|++|.+.++.+...  ..+..+++|+.++++++.+....  .+..+++++.+.++++.+++.  ..+..+++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccccc
Confidence            3444444444443322  12334444444444444433221  134444455555444444332  12344555555555


Q ss_pred             CCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCCh
Q 015457          259 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  338 (406)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (406)
                      +++.....  ..+...+.++.+.++++.+....  .+..+++|++|++++|.+.+.  ..+..+++|+.|++++| .+..
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n-~l~~  187 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN-KISD  187 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCCC-ccCC
Confidence            55444432  22334455555555555544321  234555666666666655443  12455666666666666 4444


Q ss_pred             hHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEcc
Q 015457          339 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE  380 (406)
Q Consensus       339 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~  380 (406)
                      ..  .++++++|++|++++|++++..  .+.++++|++|+++
T Consensus       188 l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 IS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             Ch--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            22  2556666666666666666533  35566666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.72  E-value=1.5e-15  Score=131.40  Aligned_cols=249  Identities=16%  Similarity=0.195  Sum_probs=141.2

Q ss_pred             HHhcCCCCcEEEcCCccCChhhhh----hccCCCCccEEEecCCccch----------hHHhhhcCCCCCCeEEccCCCC
Q 015457          126 SLSALGSLFYLNLNRCQLSDDGCE----KFSKIGSLKVLNLGFNEITD----------ECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       126 ~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      .+....+++.|++++|.+......    .+...++|+.++++++....          .+...+...++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            345567777777777766544332    23445666666665543210          1122233445555555555544


Q ss_pred             ChhhhH----hhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh-HHHHhhCCCCCcEEECCCCCCChH
Q 015457          192 GDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDT  266 (406)
Q Consensus       192 ~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~  266 (406)
                      ......    .+...++|++|+++++.+.......++.  .+          ... ........+.|+.+.++++.+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l----------~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--AL----------QELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HH----------HHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccc--cc----------cccccccccccCcccceeeccccccccc
Confidence            332211    2223444555555544433221111110  00          000 001123456777777777776654


Q ss_pred             HH----HHHhcCCCCCEEEccCCCCChhHHH-----HhhcCCCCCEEEccCCCCChHHHH----hhhcCCCCCEEeccCC
Q 015457          267 GL----AALTSLTGLTHLDLFGARITDSGAA-----YLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQN  333 (406)
Q Consensus       267 ~~----~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~  333 (406)
                      ..    ..+..++.|+.|++++|.+...+..     .+..+++|+.|++++|.++..+..    .+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            33    3345667788888888877754321     245677888888888887665433    3456788888888888


Q ss_pred             CCCChhHHHHHH----c--CCCccEEEeeCCccChhHHHhc----C-CCCCccEEEccCCCCChh
Q 015457          334 CNLTDKTLELIS----G--LTGLVSLNVSNSRITSAGLRHL----K-PLKNLRSLTLESCKVTAN  387 (406)
Q Consensus       334 ~~~~~~~~~~l~----~--~~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~l~l~~~~~~~~  387 (406)
                       .+.......++    .  .+.|++|++++|.++......+    . ++++|+.|++++|.+.+.
T Consensus       254 -~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         254 -LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             -CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             -ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence             67766554443    2  3578899999998876554433    2 577899999999988663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.4e-16  Score=129.29  Aligned_cols=188  Identities=28%  Similarity=0.383  Sum_probs=94.8

Q ss_pred             hcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCE
Q 015457          128 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC  207 (406)
Q Consensus       128 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  207 (406)
                      +.+.+|++|++.+|.+...  ..+..+++|+.|++++|.+....+  +..+++++++.+.++.++..  ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--ccccccccccc
Confidence            3455666666666665532  235556666666666665543221  45555666666655544322  12344555555


Q ss_pred             EEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCC
Q 015457          208 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  287 (406)
Q Consensus       208 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  287 (406)
                      +.++++.....  ..                        +...+.+..+.++++.+...  ..+..+++|+.|.+++|.+
T Consensus       112 l~l~~~~~~~~--~~------------------------~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         112 LDLTSTQITDV--TP------------------------LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             EECTTSCCCCC--GG------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccc--ch------------------------hccccchhhhhchhhhhchh--hhhcccccccccccccccc
Confidence            55554443221  12                        23344444455544444332  2234445555555555554


Q ss_pred             ChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEee
Q 015457          288 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  356 (406)
Q Consensus       288 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  356 (406)
                      ....  .+..+++|++|++++|.+++.  ..+..+++|++|++++| .++...  .++.+++|+.|+++
T Consensus       164 ~~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N-~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 SDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccch--hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCC-cCCCCc--ccccCCCCCEEEee
Confidence            4321  244555666666666555543  22455666666666666 455433  25566666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=7.3e-15  Score=126.94  Aligned_cols=250  Identities=19%  Similarity=0.222  Sum_probs=158.0

Q ss_pred             HhhhcCCCCCEEEecCCCCChhhHHH----HhcCCCCcEEEcCCccCChh----------hhhhccCCCCccEEEecCCc
Q 015457          101 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLSDD----------GCEKFSKIGSLKVLNLGFNE  166 (406)
Q Consensus       101 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~L~l~~~~  166 (406)
                      ..+.....++.|++++|.+.......    +...++|+.+++.++.....          ....+...++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            45677899999999999887654444    34568999999987653321          12335567899999999998


Q ss_pred             cchh----HHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChh
Q 015457          167 ITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  242 (406)
Q Consensus       167 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  242 (406)
                      +...    +...+...++|+.|++++|.+.......+...  +..         ..........+.|+.+.++++.+++.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~---------~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE---------LAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH---------HHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccccccchhhhhcccccchheeccccccccccccccccc--ccc---------cccccccccCcccceeeccccccccc
Confidence            7653    44455678999999999998755433333210  000         00011123445666666666665543


Q ss_pred             HH----HHhhCCCCCcEEECCCCCCChHHH-----HHHhcCCCCCEEEccCCCCChhHH----HHhhcCCCCCEEEccCC
Q 015457          243 SL----RKLAGLSSLKSLNLDARQITDTGL-----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGG  309 (406)
Q Consensus       243 ~~----~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~  309 (406)
                      ..    ..+..++.+++|++++|.+...+.     ..+..+++|+.|++++|.++..+.    ..+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            22    223446677777777777665422     223456777777777777665432    33456777888888887


Q ss_pred             CCChHHHHhhh------cCCCCCEEeccCCCCCChhHHHH----HH-cCCCccEEEeeCCccCh
Q 015457          310 GLTDAGVKHIK------DLSSLTLLNLSQNCNLTDKTLEL----IS-GLTGLVSLNVSNSRITS  362 (406)
Q Consensus       310 ~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~  362 (406)
                      .+.+.+...+.      ..+.|+.|++++| .+.......    +. ++++|+.|++++|.+..
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            77776555442      2356888888887 566554333    32 46778888888888643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.8e-15  Score=120.71  Aligned_cols=163  Identities=29%  Similarity=0.364  Sum_probs=85.4

Q ss_pred             CCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEcc
Q 015457          204 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  283 (406)
Q Consensus       204 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (406)
                      +|+.+++.++.+....  .+..+++|+.|++++|.+++..  .++.+++|+.|++++|.++..  ..+..+++|+.++++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccccccc
Confidence            4445555544443321  2344455555555555554422  234455555555555555543  234455556666665


Q ss_pred             CCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCccChh
Q 015457          284 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  363 (406)
Q Consensus       284 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  363 (406)
                      +|.+...  ..+..+++++.+++++|.+++.  ..+..+++|+.+++++| .+....  .+.++++|+.|++++|.+++.
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n-~l~~i~--~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIV--PLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCBC
T ss_pred             ccccccc--cccccccccccccccccccccc--ccccccccccccccccc-cccccc--cccCCCCCCEEECCCCCCCCC
Confidence            5555432  2344556666666666655542  23445566666666666 444322  255666666666666666553


Q ss_pred             HHHhcCCCCCccEEEccC
Q 015457          364 GLRHLKPLKNLRSLTLES  381 (406)
Q Consensus       364 ~~~~l~~~~~L~~l~l~~  381 (406)
                        ..+.++++|++|++++
T Consensus       194 --~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 --RALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GGGTTCTTCSEEEEEE
T ss_pred             --hhhcCCCCCCEEEccC
Confidence              2456666666666653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=7.6e-15  Score=117.00  Aligned_cols=163  Identities=27%  Similarity=0.338  Sum_probs=85.1

Q ss_pred             CCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECC
Q 015457          180 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  259 (406)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  259 (406)
                      +|+++++.++.+....  .+..+++|++|+++++.+....  .++.+++|+.|++++|.+++..  .+..+++|+.++++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc--cccccccccccccc
Confidence            4444444444443221  2334455555555555444322  2344555555555555554421  34455566666665


Q ss_pred             CCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChh
Q 015457          260 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  339 (406)
Q Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  339 (406)
                      ++.+...  ..+..++.++.+++++|.+++.  ..+..+++|+.+++++|.+++..  .+..+++|+.|++++| .+...
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N-~i~~l  193 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN-HISDL  193 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCBC
T ss_pred             ccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCC-CCCCC
Confidence            5555442  2345556666666666665542  23445666666666666665432  2555666666666666 45442


Q ss_pred             HHHHHHcCCCccEEEeeC
Q 015457          340 TLELISGLTGLVSLNVSN  357 (406)
Q Consensus       340 ~~~~l~~~~~L~~L~l~~  357 (406)
                        ..+.++++|++|++++
T Consensus       194 --~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 --RALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GGGTTCTTCSEEEEEE
T ss_pred             --hhhcCCCCCCEEEccC
Confidence              2356666677766653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=6.1e-15  Score=116.57  Aligned_cols=58  Identities=24%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             CCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          130 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      +.++++|++.++.+...  ..++.+++|++|++++|.+.+..+  +..+++|++|++++|.+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            44555555555554431  223444555555555554443211  34444455555544433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-16  Score=129.76  Aligned_cols=200  Identities=16%  Similarity=0.116  Sum_probs=118.6

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEec-cCccChhHHHhhhcCCCCCEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL  112 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L  112 (406)
                      +++++|+++++........+|.++++|++|+++++..........+..+++++++.+. .+.+....+..+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            4677777777664333333567777777777777655444445556677777777665 345555555566777777777


Q ss_pred             EecCCCCChhhH-HHHhcCCCCcEEEcCCccCChhhhhhccCC-CCccEEEecCCccchhHHhhhcCCCCCCeE-EccCC
Q 015457          113 NLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESL-NLDSC  189 (406)
Q Consensus       113 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~  189 (406)
                      +++++.+....+ ..+..+..+..+...++.+.......+..+ ..++.+++.++.+....+..+ ..+++..+ .+.++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhcccccccc
Confidence            777776654321 122334455555555555555444555544 367777777777764333333 33444444 34555


Q ss_pred             CCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEec
Q 015457          190 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  234 (406)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  234 (406)
                      .++......+..+++|+.|+++++.+.......+.++++|+.+++
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            666555556677788888888888776554444555555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.4e-14  Score=114.46  Aligned_cols=37  Identities=30%  Similarity=0.324  Sum_probs=15.1

Q ss_pred             cCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCC
Q 015457           80 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  118 (406)
Q Consensus        80 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  118 (406)
                      ..+++|++|++++|.+++..  .+.++++|++|+++++.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             ccCCCcCcCccccccccCcc--cccCCcccccccccccc
Confidence            34444444444444443322  13344444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=3.1e-13  Score=117.10  Aligned_cols=300  Identities=19%  Similarity=0.129  Sum_probs=155.4

Q ss_pred             CCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcC-CCCCEE
Q 015457           34 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLL  112 (406)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L  112 (406)
                      .++++|+++++.. ...++   ..++|++|+++++ .++.. +   ....+|+.|++.++.+...     ..+ +.|++|
T Consensus        38 ~~l~~LdLs~~~L-~~lp~---~~~~L~~L~Ls~N-~l~~l-p---~~~~~L~~L~l~~n~l~~l-----~~lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGL-SSLPE---LPPHLESLVASCN-SLTEL-P---ELPQSLKSLLVDNNNLKAL-----SDLPPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCC-SCCCS---CCTTCSEEECCSS-CCSSC-C---CCCTTCCEEECCSSCCSCC-----CSCCTTCCEE
T ss_pred             cCCCEEEeCCCCC-CCCCC---CCCCCCEEECCCC-CCccc-c---cchhhhhhhhhhhcccchh-----hhhccccccc
Confidence            4677888877653 23332   2467888888764 34422 1   2246778888877766532     223 358888


Q ss_pred             EecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccchhHHhhhcCCCCCCeEEccCCCCC
Q 015457          113 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG  192 (406)
Q Consensus       113 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (406)
                      +++++.+... | .++.+++|+++++.++.+....    .....+..+.+..+....  ...+..++.++.+.+.++...
T Consensus       104 ~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         104 GVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             ECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccc-c-chhhhccceeeccccccccccc----cccccccchhhccccccc--cccccccccceeccccccccc
Confidence            8888877654 3 2466778888888777655322    123456666665554332  233455667777777766543


Q ss_pred             hhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcEEECCCCCCChHHHHHHh
Q 015457          193 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  272 (406)
Q Consensus       193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  272 (406)
                      ....    .....+.+..........  .....++.++.+.++++......    ....++..+.+..+.+....    .
T Consensus       176 ~~~~----~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~~~----~~~~~l~~~~~~~~~~~~~~----~  241 (353)
T d1jl5a_         176 KLPD----LPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----E  241 (353)
T ss_dssp             SCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----C
T ss_pred             cccc----cccccccccccccccccc--ccccccccccccccccccccccc----cccccccccccccccccccc----c
Confidence            2211    112233444444333221  22345667777777666543311    22455666666665544321    1


Q ss_pred             cCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccE
Q 015457          273 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS  352 (406)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  352 (406)
                      ....+....+..+......    .-.......++..+.+...    ...+++|++|++++| .+...+    ..+++|+.
T Consensus       242 ~~~~l~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N-~l~~lp----~~~~~L~~  308 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNN-KLIELP----ALPPRLER  308 (353)
T ss_dssp             CCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSS-CCSCCC----CCCTTCCE
T ss_pred             ccccccccccccccccccc----cccchhcccccccCccccc----cccCCCCCEEECCCC-ccCccc----cccCCCCE
Confidence            1234444554444332210    0012333444444444332    122456666666666 444322    13456666


Q ss_pred             EEeeCCccChhHHHhcCCCCCccEEEccCCCCCh
Q 015457          353 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       353 L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      |++++|+++...    ..+++|++|++++|++..
T Consensus       309 L~L~~N~L~~l~----~~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         309 LIASFNHLAEVP----ELPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSCCSS
T ss_pred             EECCCCcCCccc----cccCCCCEEECcCCcCCC
Confidence            666666655421    123456666666666553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.9e-15  Score=121.39  Aligned_cols=196  Identities=16%  Similarity=0.112  Sum_probs=114.9

Q ss_pred             CCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChh-HHHhhhcCCCCCEEEecC-CCCChhhHHHHhcCCCCcE
Q 015457           58 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFY  135 (406)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~  135 (406)
                      +++++|+++++ .++......+.++++|++|+++++.+... ....|.+++.++.+.+.. +.+....+..+.++++|++
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            46777888774 35544555667778888888877765432 334566777777777654 4555555566677778888


Q ss_pred             EEcCCccCChhhhh-hccCCCCccEEEecCCccchhHHhhhcCC-CCCCeEEccCCCCChhhhHhhhCCCCCCEE-EcCC
Q 015457          136 LNLNRCQLSDDGCE-KFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLCNLKCL-ELSD  212 (406)
Q Consensus       136 L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l-~l~~  212 (406)
                      +++.++.+...... .+..+..+..+...++.+....+..+..+ ..++.+++.++.+.......+ ...+++.+ .+.+
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~  186 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDN  186 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccc
Confidence            88877766543221 22334455555555555543333444443 356677777776655443333 33444444 4556


Q ss_pred             CcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHhhCCCCCcE
Q 015457          213 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS  255 (406)
Q Consensus       213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  255 (406)
                      +.+.......+.++++|+.|++++|.++......+.++++|+.
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            6666555556677778888888777776543333334444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=1.4e-12  Score=112.81  Aligned_cols=314  Identities=16%  Similarity=0.075  Sum_probs=208.7

Q ss_pred             CCCceeeccCCccCCHHHHHHHhcCCCCcEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCC-CCccE
Q 015457            9 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKS   87 (406)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~   87 (406)
                      .++++|+++++. ++.. |+   -.++|++|+++++... ..+..   ..+|+.|++.++.. +.     +..+ +.|++
T Consensus        38 ~~l~~LdLs~~~-L~~l-p~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l-~~-----l~~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSL-PE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNL-KA-----LSDLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSC-CSCC-CS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCC-SC-----CCSCCTTCCE
T ss_pred             cCCCEEEeCCCC-CCCC-CC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhccc-ch-----hhhhcccccc
Confidence            478999999987 4443 22   3579999999988643 34433   46899999998643 21     2223 57999


Q ss_pred             EEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCcc
Q 015457           88 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  167 (406)
Q Consensus        88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  167 (406)
                      |+++++.+...+  .+..+++|+.++++++.+....    .....+..+.+..+...  ....+..++.++.+.+.++..
T Consensus       103 L~L~~n~l~~lp--~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         103 LGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccccccccc--chhhhccceeeccccccccccc----cccccccchhhcccccc--ccccccccccceecccccccc
Confidence            999999987543  3578899999999998776532    23567778887765543  234566778899999998876


Q ss_pred             chhHHhhhcCCCCCCeEEccCCCCChhhhHhhhCCCCCCEEEcCCCcCCchhHHhhcCCCCCcEEeccCCCCChhHHHHh
Q 015457          168 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL  247 (406)
Q Consensus       168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  247 (406)
                      .. .+.   .....+.+...+..+...  .....++.++.+++.++.....    .....++..+.+..+.+....    
T Consensus       175 ~~-~~~---~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~~~~~~~~----  240 (353)
T d1jl5a_         175 KK-LPD---LPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDLP----  240 (353)
T ss_dssp             SS-CCC---CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSCCSCCC----
T ss_pred             cc-ccc---cccccccccccccccccc--cccccccccccccccccccccc----ccccccccccccccccccccc----
Confidence            53 111   223345566655543322  2345688999999998875432    234467888888877665421    


Q ss_pred             hCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCE
Q 015457          248 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  327 (406)
Q Consensus       248 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  327 (406)
                      ...+.+....+..+.+....  .  -.......++..+.+...    ...+++|++|++++|.+... +   ..+++|+.
T Consensus       241 ~~~~~l~~~~~~~~~~~~l~--~--l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~l-p---~~~~~L~~  308 (353)
T d1jl5a_         241 ELPQSLTFLDVSENIFSGLS--E--LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-P---ALPPRLER  308 (353)
T ss_dssp             CCCTTCCEEECCSSCCSEES--C--CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCC-C---CCCTTCCE
T ss_pred             cccccccccccccccccccc--c--ccchhcccccccCccccc----cccCCCCCEEECCCCccCcc-c---cccCCCCE
Confidence            23456777777665554321  1  113455666766666543    23478999999999998764 2   23689999


Q ss_pred             EeccCCCCCChhHHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEcc
Q 015457          328 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE  380 (406)
Q Consensus       328 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~  380 (406)
                      |++++| .++...    ..+++|++|++++|+++..+ .   -..+|+.|.+.
T Consensus       309 L~L~~N-~L~~l~----~~~~~L~~L~L~~N~L~~lp-~---~~~~L~~L~~~  352 (353)
T d1jl5a_         309 LIASFN-HLAEVP----ELPQNLKQLHVEYNPLREFP-D---IPESVEDLRMN  352 (353)
T ss_dssp             EECCSS-CCSCCC----CCCTTCCEEECCSSCCSSCC-C---CCTTCCEEECC
T ss_pred             EECCCC-cCCccc----cccCCCCEEECcCCcCCCCC-c---cccccCeeECc
Confidence            999999 676532    13578999999999987632 1   23468877765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-14  Score=107.27  Aligned_cols=132  Identities=20%  Similarity=0.221  Sum_probs=73.3

Q ss_pred             CCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEE
Q 015457          249 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  328 (406)
Q Consensus       249 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  328 (406)
                      ++.++++|++++|.++... ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3445555666665555542 2234455666666666665543  124556666666666666665544444556666666


Q ss_pred             eccCCCCCChh-HHHHHHcCCCccEEEeeCCccChhH---HHhcCCCCCccEEEccCCCCCh
Q 015457          329 NLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       329 ~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ++++| .+... ....+..+++|+.|++++|+++...   ...+..+|+|++|+  +.+++.
T Consensus        93 ~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~  151 (162)
T d1a9na_          93 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKL  151 (162)
T ss_dssp             ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCH
T ss_pred             eeccc-cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCH
Confidence            66666 44432 2244556677777777777664422   23445567777655  444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-14  Score=107.25  Aligned_cols=129  Identities=19%  Similarity=0.202  Sum_probs=104.6

Q ss_pred             hcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCcc
Q 015457          272 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV  351 (406)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  351 (406)
                      .++.++++|++++|+++.. +..+..+++|+.|++++|.+...  ..+..+++|++|++++| .+....+..+..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccc-cccCCCccccccccccc
Confidence            4567899999999999875 34456789999999999999875  45788999999999999 78776666677899999


Q ss_pred             EEEeeCCccChhHH-HhcCCCCCccEEEccCCCCChhh-HHHHhhcCCCCccccC
Q 015457          352 SLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSFR  404 (406)
Q Consensus       352 ~L~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~l~~l~  404 (406)
                      .|++++|.+..... ..+..+++|+++++++|++.... ........+|+|+.|.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999887543 56788999999999999986633 3333345788888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=8.2e-13  Score=103.43  Aligned_cols=109  Identities=22%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             CCccEEEeccCccCh-hHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEE
Q 015457           83 TNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN  161 (406)
Q Consensus        83 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  161 (406)
                      +++++|++++|.++. .....|.++++|+.|+++++.+....+..+..+++|++|++++|.+....+..|..+++|+.|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            345555555555543 2233445555555555555555555455555555566666655555555555555556666666


Q ss_pred             ecCCccchhHHhhhcCCCCCCeEEccCCCC
Q 015457          162 LGFNEITDECLVHLKGLTNLESLNLDSCGI  191 (406)
Q Consensus       162 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (406)
                      +++|.+....+.+|..+++|+++++++|.+
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cCCccccccCHHHhcCCccccccccccccc
Confidence            666655544455555556666666665544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2.2e-13  Score=97.87  Aligned_cols=119  Identities=21%  Similarity=0.259  Sum_probs=70.2

Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCC
Q 015457          279 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  358 (406)
Q Consensus       279 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  358 (406)
                      .|++++|.++...  .+..+++|++|++++|.++.. +..+..+++|+.|++++| .+....  .++.+++|+.|++++|
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N-~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccc-cccccC--ccccccccCeEECCCC
Confidence            4666666665432  255666666666666666654 334566677777777776 455432  3566677777777777


Q ss_pred             ccChhH-HHhcCCCCCccEEEccCCCCChhh-HHHHhhcCCCCcccc
Q 015457          359 RITSAG-LRHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSF  403 (406)
Q Consensus       359 ~~~~~~-~~~l~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~l~~l  403 (406)
                      ++.... ...+..+++|+.+++++|++.... +..-....+|+++.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            766543 245566777777777777765421 222222356666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=9.1e-13  Score=103.18  Aligned_cols=129  Identities=19%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             cEeeccCcccccCccccccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecC
Q 015457           37 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG  116 (406)
Q Consensus        37 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  116 (406)
                      ++++.++.. ....|..+.  +++++|+++++..........+..+++|++|+++++.+.......+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~-L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCC-cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            345555443 223333332  46777777775432334455566777777777777777666666677777777777777


Q ss_pred             CCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCccEEEecCCccc
Q 015457          117 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  168 (406)
Q Consensus       117 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  168 (406)
                      |.+....+..|.++++|++|++++|.+....++.|..+++|+++++++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            7777766666777777777777777777666667777777777777777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=7.8e-12  Score=89.60  Aligned_cols=85  Identities=21%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             ccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhh-hhhccCCCCc
Q 015457           79 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG-CEKFSKIGSL  157 (406)
Q Consensus        79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L  157 (406)
                      +..+++|++|++++|.+... +..+..+++|+.|++++|.+... + .+..+++|+++++++|.+.... ...+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccCcc-hhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            34444444444444444432 12344444444444444444432 1 2344444444444444443221 1233334444


Q ss_pred             cEEEecCCc
Q 015457          158 KVLNLGFNE  166 (406)
Q Consensus       158 ~~L~l~~~~  166 (406)
                      +.+++++|+
T Consensus        93 ~~L~l~~N~  101 (124)
T d1dcea3          93 VLLNLQGNS  101 (124)
T ss_dssp             CEEECTTSG
T ss_pred             CEEECCCCc
Confidence            444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=1.2e-12  Score=102.59  Aligned_cols=134  Identities=22%  Similarity=0.246  Sum_probs=93.7

Q ss_pred             HHHhhCCCCCcEEECCCCCCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEccCCCCChHHHHhhhcCC
Q 015457          244 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  323 (406)
Q Consensus       244 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  323 (406)
                      +..++.+++|++|++++|.++..  ..+..+++|+.|++++|.++... .....+++|+.|++++|.++..  ..+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccccc-cccccccccccccccccccccc--ccccccc
Confidence            45567788888999988888764  34667788888988888876532 2233456788888888888764  3466778


Q ss_pred             CCCEEeccCCCCCChhH-HHHHHcCCCccEEEeeCCccChhHHH----------hcCCCCCccEEEccCCCCC
Q 015457          324 SLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVT  385 (406)
Q Consensus       324 ~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~l~l~~~~~~  385 (406)
                      +|+.|++++| .+.... ...+..+++|+.|++++|++......          .+..+|+|+.|+  +.+++
T Consensus       116 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            8888888888 565543 35677888888888888876543221          245678888765  55544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=4e-12  Score=99.52  Aligned_cols=126  Identities=21%  Similarity=0.251  Sum_probs=59.2

Q ss_pred             ccCCCCccEEeecCCCCcCcCccccccCCCCccEEEeccCccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 015457           54 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL  133 (406)
Q Consensus        54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  133 (406)
                      +..+++|++|+++++. ++..  ..+..+++|++|++++|.+.... .....+++|+.|++++|.++..  ..+..+++|
T Consensus        44 l~~L~~L~~L~Ls~n~-I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          44 LSTLKACKHLALSTNN-IEKI--SSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHTTTCCEEECSEEE-ESCC--CCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             HhcccccceeECcccC-CCCc--ccccCCccccChhhccccccccc-cccccccccccccccccccccc--ccccccccc
Confidence            4444455555554432 2221  23444455555555555444221 1112233455555555555442  234455555


Q ss_pred             cEEEcCCccCChhh-hhhccCCCCccEEEecCCccchhHH----------hhhcCCCCCCeEE
Q 015457          134 FYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEITDECL----------VHLKGLTNLESLN  185 (406)
Q Consensus       134 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----------~~~~~~~~L~~L~  185 (406)
                      ++|++++|.+.... ...+..+++|+.|++++|++....+          ..+..+|+|+.|+
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            55555555554332 1344555566666665554432211          1245677788775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8.2e-11  Score=87.98  Aligned_cols=104  Identities=22%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             CcEEeccCCCCChhHHHHhhCCCCCcEEECCCC-CCChHHHHHHhcCCCCCEEEccCCCCChhHHHHhhcCCCCCEEEcc
Q 015457          229 LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  307 (406)
Q Consensus       229 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  307 (406)
                      .+.++..++.+.+ .+..+..+++|++|++.++ .++......|..+++|+.|++++|+++...+..+..+++|++|+++
T Consensus        10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3344444444443 2333445566666666544 3555544555666666666666666666555556666666666666


Q ss_pred             CCCCChHHHHhhhcCCCCCEEeccCCC
Q 015457          308 GGGLTDAGVKHIKDLSSLTLLNLSQNC  334 (406)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (406)
                      +|.++......+. ..+|+.|+|++|+
T Consensus        89 ~N~l~~l~~~~~~-~~~l~~L~L~~Np  114 (156)
T d2ifga3          89 FNALESLSWKTVQ-GLSLQELVLSGNP  114 (156)
T ss_dssp             SSCCSCCCSTTTC-SCCCCEEECCSSC
T ss_pred             CCCCcccChhhhc-cccccccccCCCc
Confidence            6666654333333 2356666666663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.6e-09  Score=80.86  Aligned_cols=88  Identities=25%  Similarity=0.252  Sum_probs=47.1

Q ss_pred             ccCCCCccEEEeccC-ccChhHHHhhhcCCCCCEEEecCCCCChhhHHHHhcCCCCcEEEcCCccCChhhhhhccCCCCc
Q 015457           79 LSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL  157 (406)
Q Consensus        79 ~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  157 (406)
                      +..+++|++|.+.++ .+.......|.++++|+.|++++|.+....+..|..+++|++|++++|.+.......+... ++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l  105 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SL  105 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cc
Confidence            344455555555433 3444444455555556666666555555555555556666666666665554443344332 46


Q ss_pred             cEEEecCCcc
Q 015457          158 KVLNLGFNEI  167 (406)
Q Consensus       158 ~~L~l~~~~~  167 (406)
                      +.|++++|++
T Consensus       106 ~~L~L~~Np~  115 (156)
T d2ifga3         106 QELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCC
T ss_pred             cccccCCCcc
Confidence            6666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.41  E-value=3.5e-06  Score=63.01  Aligned_cols=36  Identities=17%  Similarity=0.078  Sum_probs=15.2

Q ss_pred             CCCCCEEEccCCCCChHHHHh----hhcCCCCCEEeccCC
Q 015457          298 FKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQN  333 (406)
Q Consensus       298 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~  333 (406)
                      .+.|++|++++|.+.+.+...    +...++|++|++++|
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            344444444444444433322    223344444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.34  E-value=5e-06  Score=62.15  Aligned_cols=110  Identities=14%  Similarity=0.136  Sum_probs=72.2

Q ss_pred             cCCCCCcEEeccCC-CCChhH----HHHhhCCCCCcEEECCCCCCChHHH----HHHhcCCCCCEEEccCCCCChhHHHH
Q 015457          224 SGLTNLESINLSFT-GISDGS----LRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAY  294 (406)
Q Consensus       224 ~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~  294 (406)
                      ...++|+.|+++++ .+++..    ...+...+.|++|++++|.+.....    ..+...+.|++|++++|.++..+...
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34577777777764 455433    2344566778888888887776443    34456678888888888888755443


Q ss_pred             ----hhcCCCCCEEEccCCCCC---hHH----HHhhhcCCCCCEEeccCC
Q 015457          295 ----LRNFKNLRSLEICGGGLT---DAG----VKHIKDLSSLTLLNLSQN  333 (406)
Q Consensus       295 ----~~~~~~L~~L~l~~~~~~---~~~----~~~~~~~~~L~~L~l~~~  333 (406)
                          +...++|++|++++|...   ..+    ...+...++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                456688999999876433   222    223445678888888765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.26  E-value=2.2e-05  Score=58.50  Aligned_cols=67  Identities=25%  Similarity=0.317  Sum_probs=28.9

Q ss_pred             CCCCCcEEECCC-CCCChHHH----HHHhcCCCCCEEEccCCCCChhHHHH----hhcCCCCCEEEccCCCCChHH
Q 015457          249 GLSSLKSLNLDA-RQITDTGL----AALTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAG  315 (406)
Q Consensus       249 ~~~~L~~L~l~~-~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~  315 (406)
                      +.+.|++|++++ +.++....    ..+...+.|++|++++|.++......    +...++++.+++++|.+...+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            344555555544 23433322    12223445555555555554432222    233445555555555444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.17  E-value=1.7e-05  Score=59.22  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             HHHhcCCCCCEEEccC-CCCChhHHH----HhhcCCCCCEEEccCCCCChHHHHh----hhcCCCCCEEeccCCCCCChh
Q 015457          269 AALTSLTGLTHLDLFG-ARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQNCNLTDK  339 (406)
Q Consensus       269 ~~~~~~~~L~~L~l~~-~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~  339 (406)
                      ....+.+.|++|++++ +.++.....    .+...++|++|++++|.++......    +...++++.+++++| .+...
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~   89 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS   89 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccch
Confidence            3445779999999998 457765433    3457899999999999998876554    356799999999999 66665


Q ss_pred             HH----HHHHcCCCccEEEee--CCccChhHHH----hcCCCCCccEEEccCCCCCh
Q 015457          340 TL----ELISGLTGLVSLNVS--NSRITSAGLR----HLKPLKNLRSLTLESCKVTA  386 (406)
Q Consensus       340 ~~----~~l~~~~~L~~L~l~--~~~~~~~~~~----~l~~~~~L~~l~l~~~~~~~  386 (406)
                      ..    ..+...++|+.+++.  +|.+.+....    .+...++|+.|+++.+....
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            54    344567889986665  5677765443    44678999999998886543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.1e-06  Score=65.53  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=25.8

Q ss_pred             CCCCCEEEccCCCCChHH--HHhhhcCCCCCEEeccCCCCCChhHHHHHHcCCCccEEEeeCCcc
Q 015457          298 FKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  360 (406)
Q Consensus       298 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  360 (406)
                      +++|++|++++|.++...  ...+..+++|+.|++++| .+............+|+.+++.+|++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCc
Confidence            444444444444444321  122334455555555555 33332221222233455555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=9.7e-07  Score=65.80  Aligned_cols=86  Identities=20%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             hhhcCCCCCEEeccCCCCCChh--HHHHHHcCCCccEEEeeCCccChhHHHhcCCCCCccEEEccCCCCCh-----hhHH
Q 015457          318 HIKDLSSLTLLNLSQNCNLTDK--TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-----NDIK  390 (406)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~-----~~~~  390 (406)
                      ....+++|++|++++| .++..  ....+..+++|+.|++++|.++....-......+|+.+++++|++..     ....
T Consensus        60 ~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3456899999999999 67653  24567789999999999999987554333455679999999999864     2344


Q ss_pred             HHhhcCCCCccccC
Q 015457          391 RLQSRDLPNLVSFR  404 (406)
Q Consensus       391 ~~~~~~~~~l~~l~  404 (406)
                      ......+|+|+.|.
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            44556899998764