Citrus Sinensis ID: 015540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MRRAVKREAGSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGASRTTPIRKLSRNRGLVIREESVVEDSPEDDVAERSTRMLRCKRKII
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEccccccccccccccccEEEEEEEcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHcHccHHHHccHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHEEEcccEEEEEccccccEEEEcccccHHHHHcccccccEEEEEEcHHHHHHHHHHccccccccccccccccccccccccccccccHcccccccHHHHHcccccEEccccEEccccccccHHHHHHHHHcHHHcc
Coil and Loop (DISEMBL)
mrravkreagsssrgrvddssEQLLRTVKReklsrngadenldnestrtnqpqdtvQRRVLRSKYLAVLSKIQDqrddltrvdSKKFNTILKEVQNLHrdvqkpreqVADAEALLDITSTLVTSVksqsnegvtptDFVSCLLTMfgesnsnrlssqgnnnaqmsiNWKDVGLAvspflsachgcstmlgpmktevKQRKVVVRkkrekptqtaqpeevddseavektdtdknMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHgfhlvaprnapsadsvmsgqvkyshfvfrydfkdwklmkdvvpageelmphressnalpvpqaeqasynntegasrttpirklsrnrglvireesvvedspeddvAERSTRMLRCKRKII
Flexible Loop (DISEMBL)
mrravkreagsssrgrvddsseqllrtvkreklsrngadenldnestrtnqpqdtvqrrvLRSKYLAVLskiqdqrddltrvdSKKFNTILKevqnlhrdvqkprEQVADAEALLDITSTLVtsvksqsnegvtPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCStmlgpmktevkqrkvvvrkkrekptqtaqpeevddseavektdtdknmttmfeilrrkksvrlESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQasynntegasrttpirklsrnrglvireesvvedspeddvaerstrmlrckrkii
Low Complexity Region (SEG)
MRRAVKREAgsssrgrvddssEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMktevkqrkvvvrkkrekPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGASRTTPIRKLSRNRGLVIReesvvedspeddvaeRSTRMLRCKRKII
Disordered region (IsUnstruct)
***********************************************************VLRSKYLAVLSKIQ************KFNTILKEVQN***************EALLDITSTLVTS********VTPTDFVSCLLTMFG*****************SINWKDVGLAVSPFLSACHGCSTMLGP*********************************************MFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRN*****SVMSGQVKYSHFVFRYDFKDWKLMKDVVP*****************************************************************************
Disordered Region (DISOPRED)
***************************************************************KYLAVL*****************FNTILKEVQNLHRDVQKPREQVADAEALLDITSTL***********VTPTDFVSCLLTMFGE**************QMSINWKDVGLAVSPFLSACHGCSTMLGPMK******************************************TMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHL**********************VFRYDFKDWKLMKDVVPAGEELM****************************************************************RCKRKI*
Disordered Region (DISEMBL)
*********************EQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTS********VTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQ***************************EKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEE*******************************PIRKLSRNRGLVIRE***************STRMLRCKRKII
Disordered Region (DISPRO)
*************************************************NQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGES**************MSINWKDVGLAVSPFLSACHGCSTMLGPMKT*******************************EKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMP**************************TTPIRKLSRNRGLVIREESVVEDS************LRC*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRAVKREAGSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGASRTTPIRKLSRNRGLVIREESVVEDSPEDDVAERSTRMLRCKRKII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q6BDR8	300	Non-structural maintenanc	yes	no	0.669	0.903	0.247	2e-15
Q2TBI1	382	Non-structural maintenanc	yes	no	0.639	0.678	0.225	4e-10
Q9NXX6	385	Non-structural maintenanc	yes	no	0.619	0.651	0.239	2e-09
A6QPC8	379	EP300-interacting inhibit	no	no	0.644	0.688	0.231	4e-07
A5LFW4	371	EP300-interacting inhibit	N/A	no	0.565	0.617	0.249	1e-05
Q8N140	333	EP300-interacting inhibit	no	no	0.567	0.690	0.234	1e-05
P43124	402	Non-structural maintenanc	yes	no	0.392	0.395	0.24	9e-05
Q3V124	375	EP300-interacting inhibit	no	no	0.639	0.690	0.209	9e-05
Q4V8G2	387	EP300-interacting inhibit	yes	no	0.590	0.617	0.214	0.0002

>sp|Q6BDR8|NSE4_SCHPO Non-structural maintenance of chromosome element 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse4 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 55  TVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEAL 114
           ++ +R LR +Y  +++K+Q+ R +L   ++      +    +L   V  P E   DA   
Sbjct: 3   SIDKRDLRKRYRNLINKVQESRLELVDEENNNLYETITTANDLFSSVDAPTEATLDA--- 59

Query: 115 LDITSTL-VTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSIN--WKDV 171
           L +T T+ + S+K++      P  F   L T   +   N  +S  N      I+  W  +
Sbjct: 60  LLLTKTVDLASIKARQLHIGRP-KFNIELFTKNIKQFLNYPTSHSNVTRIQEIDTAWSRL 118

Query: 172 GLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKREK-PTQTAQPEEVDDSE-AVEKTD 229
           G   S         + M+GP+    K+R +  R++ +K P    QP  +++     ++ +
Sbjct: 119 GKLASNCEKQPASLNLMVGPLSFRKKERNIQRRERLQKAPNVLTQPTMLNERNITTQENN 178

Query: 230 TDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHL 289
           T KN+  +  +L+  + V     I N +S+ QTVENLF +SFL K+G+  +  NE G  +
Sbjct: 179 TTKNVLHISRLLQAHQPVNFLKFITNPQSYPQTVENLFYVSFLFKEGKAALVENESGILM 238

Query: 290 VAPRNAPSADSVMSGQVKYSHFV-------FRYDFKDWKLMKDVVPA 329
           +  R  P+ D V++G+++    V       +    K++ + + ++P 
Sbjct: 239 LETRIPPTDDQVVAGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPT 285

Acts in a DNA repair pathway for removal of UV-induced DNA damage that is distinct from classical nucleotide excision repair and in repair of ionizing radiation damage. Functions in homologous recombination repair of DNA double strand breaks and in recovery of stalled replication forks. Plays a critical role in meiosis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2TBI1|NSE4A_BOVIN Non-structural maintenance of chromosomes element 4 homolog A OS=Bos taurus GN=NSMCE4A PE=2 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 21/280 (7%)

Query: 59  RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
           R +R +Y A+++ +Q  R+D+    S K   +L+E   L   V + RE V DA  L+ + 
Sbjct: 83  RQIRHQYRALINSVQQNREDILNA-SDKLTEVLEEANTLFNGVSRAREAVLDAHFLV-LA 140

Query: 119 STLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQ----GNNNAQMSI----NWKD 170
           S L      Q    +   D +  + T+      N L ++      +++ +      +WK 
Sbjct: 141 SDLGKEKAKQLRSDLNSFDMLRYVETLLTHMGVNPLEAEELIRDEDSSDLEFIVYDSWKI 200

Query: 171 VGLAVSPFLSACHGCSTMLGPMKTEV---KQRKVVVRKKREKPTQTAQPEEVDDSEAVEK 227
            G       +  H    +LG ++ E    K R    RK R    Q A P ++   E   +
Sbjct: 201 SGKTAENTFNKTHTFHFLLGSIQGECPVPKPRIERPRKVRMIEEQQAMPAQLKRMEESHQ 260

Query: 228 TDTDKNMTTMFEILRR------KKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIA 281
             T+K +  +  +L+          +     +++  SF +TVEN+F +SF+++DG   I 
Sbjct: 261 EATEKEVERILGLLQTYFQEDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIR 320

Query: 282 VNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWK 321
           ++     ++ P N  + +S  + Q++ +  +    ++DW+
Sbjct: 321 LDRDRLPVIEPVNI-NEESGGNTQIR-NQAIIALSYRDWE 358

Component of the SMC5-SMC6 complex, a complex involved in repair of DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination and mediates sumoylation of shelterin complex (telosome) components.

Bos taurus (taxid: 9913)

>sp|Q9NXX6|NSE4A_HUMAN Non-structural maintenance of chromosomes element 4 homolog A OS=Homo sapiens GN=NSMCE4A PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 25/276 (9%)

Query: 36  NGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQ 95
           +  DE +D  S      Q     R +R +Y A+++ +Q  R+D+      K   +L+E  
Sbjct: 62  DSGDEMMDPASLEAEADQGLC--RQIRHQYRALINSVQQNREDILNA-GDKLTEVLEEAN 118

Query: 96  NLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTD---FVSCLLTMFGES--- 149
            L  +V + RE V DA  L+ + S L      Q    ++  D   +V  LLT  G +   
Sbjct: 119 TLFNEVSRAREAVLDAHFLV-LASDLGKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLE 177

Query: 150 NSNRLSSQGNNNAQMSI--NWKDVGLAVSPFLSACHGCSTMLGPMKTEV--------KQR 199
               +  + + + +  +  +WK  G       +  H    +LG +  E         + R
Sbjct: 178 AEELIRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPR 237

Query: 200 KV-VVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLE--SLILNR 256
           KV V++++R  P Q  + EE    EA EK + ++ +  +    R      +     +++ 
Sbjct: 238 KVPVIQEERAMPAQLRRMEE-SHQEATEK-EVERILGLLQTYFREDPDTPMSFFDFVVDP 295

Query: 257 RSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAP 292
            SF +TVEN+F +SF+++DG   I +++    ++ P
Sbjct: 296 HSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEP 331

Component of the SMC5-SMC6 complex, a complex involved in DNA double-strand breaks by homologous recombination. The complex may promote sister chromatid homologous recombination by recruiting the SMC1-SMC3 cohesin complex to double-strand breaks. The complex is required for telomere maintenance via recombination in ALT (alternative lengthening of telomeres) cell lines and mediates sumoylation of shelterin complex (telosome) components which is proposed to lead to shelterin complex disassembly in ALT-associated PML bodies (APBs). Is involved in positive regulation of response to DNA damage stimulus.

Homo sapiens (taxid: 9606)

>sp|A6QPC8|EID3_BOVIN EP300-interacting inhibitor of differentiation 3 OS=Bos taurus GN=EID3 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 37/298 (12%)

Query: 59  RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALL--- 115
           R +R +Y  ++  +Q  RDD+    S      L+E   L   V + RE   D++ L+   
Sbjct: 84  RSIRKQYRQLIYTVQQNRDDIVNTASDSLTEALEEANVLFDAVSRTREAALDSQFLVLAS 143

Query: 116 DITSTLVTSVKSQSN--EGVTPTDFVSCLLTM-FGESNSNRLSSQGNNNAQMSINWKDVG 172
           D+       + S  N    V   DF+   + + + E +     +  ++N  +S  W+ V 
Sbjct: 144 DLGKEKAKHLNSDMNFFNQVAFCDFLFIFVGLNWMEDDERDPLNNCDDNIALSF-WETVQ 202

Query: 173 LAVSPFLSACHGCSTMLGPMKTEVKQRKV------VVRKKREK---PTQTAQPEEVDDSE 223
              +  +S       + G  K E   RK        V+K  E    PT+  + +   + E
Sbjct: 203 KEATSCISQAETFHFLFGSFKPESAARKPRRNHRRKVQKMEENGVMPTKLRKLDLSGNQE 262

Query: 224 AVEKTDTDKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIA 281
           A EK + ++ +  +    R+     V     +++  SF++TVEN+F +SF+++DG   I 
Sbjct: 263 ATEK-EVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARIR 321

Query: 282 VNEHGFHLVAPRNA--------PSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGE 331
           +++    ++ P N         PS  S   G +  S        +DW   K++V A E
Sbjct: 322 LDQDRLPILEPININLAGEGNDPSFHSRKQGVISLS-------LQDW---KNIVAAFE 369

Act as a repressor of nuclear receptor-dependent transcription possibly by interfering with CREBBP-dependent coactivation. May function as a coinhibitor of other CREBBP/EP300-dependent transcription factors.

Bos taurus (taxid: 9913)

>sp|A5LFW4|EID3_MACFA EP300-interacting inhibitor of differentiation 3 OS=Macaca fascicularis GN=EID3 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 28/257 (10%)

Query: 59  RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
           R +R +Y  ++  ++  R D+    +      L+E   L   V + RE   DA+ L+ + 
Sbjct: 76  RSIRRQYRQLMYCVRQNRGDIVNSANNSLTEALEEANVLFDGVSRTREAALDAQFLV-MA 134

Query: 119 STLVTSVKSQSNEGVTPTD-FVSC-LLTMFG-----ESNSNRLSSQGNNNAQMSINWKDV 171
           S L      Q N  +   +    C  L +FG     E   + LS   ++N  +S  WK +
Sbjct: 135 SDLGKEKAKQLNSDLNFFNQLAFCDFLFLFGGLNWMEGEPDDLS-DCDDNIALSF-WKAM 192

Query: 172 GLAVSPFLSACHGCSTMLGPMKTEV--------KQRKVVVRKKREKPTQTAQPEEVDDSE 223
               + ++        + G  K E          Q+KV  RK  E      +  ++D S 
Sbjct: 193 EKEATSWMVKAETFHFVFGSFKLEPSAPKPRLEHQKKV--RKMEENGNMPTKLRKLDLSS 250

Query: 224 AVEKTDTDKNMTTMFEILR---RKKS---VRLESLILNRRSFAQTVENLFALSFLVKDGR 277
             E T+  KN+  +  +L+   RK     V     +++  SF++TVEN+F +SF+V+DG 
Sbjct: 251 YPEATE--KNVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIVRDGF 308

Query: 278 VEIAVNEHGFHLVAPRN 294
             I ++E    ++ P N
Sbjct: 309 ARIRLDEDRLPILEPMN 325

Act as a repressor of nuclear receptor-dependent transcription possibly by interfering with CREBBP-dependent coactivation. May function as a coinhibitor of other CREBBP/EP300-dependent transcription factors.

Macaca fascicularis (taxid: 9541)

>sp|Q8N140|EID3_HUMAN EP300-interacting inhibitor of differentiation 3 OS=Homo sapiens GN=EID3 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 26/256 (10%)

Query: 59  RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALL--- 115
           R +R +Y  ++  ++  R+D+    +      L+E   L   V + RE   DA  L+   
Sbjct: 38  RSIRRQYRQLMYCVRQNREDIVSSANNSLTEALEEANVLFDGVSRTREAALDARFLVMAS 97

Query: 116 DITSTLVTSVKSQSN--EGVTPTDFVSCLLTM-FGESNSNRLSSQGNNNAQMSINWKDVG 172
           D+       + S  N    +   DF+   + + + E + ++LS   +++  +S  WK + 
Sbjct: 98  DLGKEKAKQLNSDMNFFNQLAFCDFLFLFVGLNWMEGDPDKLS-DCDDSIALSF-WKAIE 155

Query: 173 LAVSPFLSACHGCSTMLGPMKTE--------VKQRKVVVRKKREKPTQTAQPEEVDDSEA 224
              + ++        + G  K E          Q+KV  RK  E      + +++D S  
Sbjct: 156 KEATSWMVKAETFHFVFGSFKLERSAPKPRLEHQKKV--RKMEENGNMPTKLQKLDLSSY 213

Query: 225 VEKTDTDKNMTTMFEILR---RKKS---VRLESLILNRRSFAQTVENLFALSFLVKDGRV 278
            E T+  KN+  +  +L+   RK     V     +++  SF++TVEN+F +SF+V+DG  
Sbjct: 214 PEATE--KNVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIVRDGFA 271

Query: 279 EIAVNEHGFHLVAPRN 294
            I ++E    ++ P N
Sbjct: 272 RIRLDEDRLPILEPMN 287

Act as a repressor of nuclear receptor-dependent transcription possibly by interfering with CREBBP-dependent coactivation. May function as a coinhibitor of other CREBBP/EP300-dependent transcription factors.

Homo sapiens (taxid: 9606)

>sp|P43124|NSE4_YEAST Non-structural maintenance of chromosome element 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSE4 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 16/175 (9%)

Query: 166 INWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKR-----EKPTQTAQPEEVD 220
            NW  +G   +           ++GP+  E K R +  R++      EK T     +   
Sbjct: 218 FNWFRIGALYNTISKNAPITDHLMGPLSIEKKPRVLTQRRRNNDQVGEKITAEKITQHSL 277

Query: 221 DSEAVEKT--DTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRV 278
           +S   E T     K    + + L  + S+ L   I++  SF++++ENLF  SFL+K+G++
Sbjct: 278 NSTQQETTPEQVKKCFKKLSKKLGPEGSINLFKFIIDPNSFSRSIENLFYTSFLIKEGKL 337

Query: 279 EIAVNEHGFHLVAPRNAPSADSVMSGQVK--------YSHFVFRYDFKDW-KLMK 324
            +  +E G   +  + + S     S +++         +H +F+ D   W KL+K
Sbjct: 338 LMEHDEEGLPTIKIKQSISHTDSRSKEIERQRRRAAHQNHIIFQMDMPTWRKLIK 392

Acts in a DNA repair pathway for removal of UV-induced DNA damage that is distinct from classical nucleotide excision repair and in repair of ionizing radiation damage. Functions in homologous recombination repair of DNA double strand breaks and in recovery of stalled replication forks.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q3V124|EID3_MOUSE EP300-interacting inhibitor of differentiation 3 OS=Mus musculus GN=Eid3 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 114/282 (40%), Gaps = 23/282 (8%)

Query: 59  RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
           R +R +Y  ++  +Q  R+D+    S   +  L+E   L   V + RE   DA+ L+ + 
Sbjct: 81  RKIRRQYRQLIYTVQQNREDIVNTASDTLSEALEEANVLFDGVSRTREAALDAQFLV-LA 139

Query: 119 STLVTSVKSQSNEGVT---PTDFVSCLLTMFGES---NSNRLSSQGNNNAQMSINWKDVG 172
           S L      Q N  +    P  F   LL   G +      +  S  +++  +S  W  + 
Sbjct: 140 SDLGKEKAKQLNTDMNFFNPIAFCDLLLLFVGFNWVEEECKEFSDCDDSIVLSF-WGMLH 198

Query: 173 LAVSPFLSACHGCSTMLGPMKTE---------VKQRKVVVRKKREKPTQTAQPEEVDDSE 223
              + ++        + G  K E           +R   +    + PT+  + +   + E
Sbjct: 199 EEATSWMLQAETFHFIFGSFKAERSARKPRLGCHKRACKMEGSGDMPTKLRRLDVHANQE 258

Query: 224 AVEKTDTDKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIA 281
             EK + ++ +  +    ++     V     +++  SF++TVEN+F +SF+++DG   I 
Sbjct: 259 TTEK-EVERILGLLQTYFQKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARIR 317

Query: 282 VNEHGFHLVAPRNAPSADSVMSGQVKYS--HFVFRYDFKDWK 321
           +++    ++ P N    D   S    Y     V     +DWK
Sbjct: 318 LDQDRLPILEPTNVSQVDD-ESDSYSYCRKQGVISLSLQDWK 358

Act as a repressor of nuclear receptor-dependent transcription possibly by interfering with CREBBP-dependent coactivation. May function as a coinhibitor of other CREBBP/EP300-dependent transcription factors.

Mus musculus (taxid: 10090)

>sp|Q4V8G2|EID3_RAT EP300-interacting inhibitor of differentiation 3 OS=Rattus norvegicus GN=Eid3 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 18/257 (7%)

Query: 59  RVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDIT 118
           R +R +Y  ++  +Q  R+D+    S      L+E   L   V + RE   DA+ L+ + 
Sbjct: 93  RSIRRQYRQLIYTVQQNREDIVNTASDSLTEALEEANVLFDGVSRTREAALDAQFLV-LA 151

Query: 119 STLVTSVKSQSNEGVTPTDFVS-C-LLTMFGESNSNRLSSQGNNNAQMSIN---WKDVGL 173
           S L      Q N  ++  + V+ C LL +F   N      +  +    SI    W  +  
Sbjct: 152 SDLGKEKAKQLNSDMSFFNHVAFCELLLVFVGLNWMEEECEELSECDESIALSFWNMLHK 211

Query: 174 AVSPFLSACHGCSTMLGPMKTEVKQRK---------VVVRKKREKPTQTAQPEEVDDSEA 224
             + ++        + G  K E   RK           +    + PT+  + +   + E 
Sbjct: 212 EATAWMLQAETFHFIFGSFKAERSARKPRQEHHKRACKMEGNGDMPTKLRKLDVHANQET 271

Query: 225 VEKTDTDKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAV 282
            EK + ++ +  +    ++     V     +++  SF++TVEN+F +SF+++DG   I +
Sbjct: 272 TEK-EVERILGLLQTYFQKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIIRDGFARIRL 330

Query: 283 NEHGFHLVAPRNAPSAD 299
           ++    ++ P N    D
Sbjct: 331 DQDRLPILEPTNVNQVD 347

Act as a repressor of nuclear receptor-dependent transcription possibly by interfering with CREBBP-dependent coactivation. May function as a coinhibitor of other CREBBP/EP300-dependent transcription factors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
255578176	391	Non-structural maintenance of chromosome	0.958	0.992	0.625	1e-132
224076058	393	predicted protein [Populus trichocarpa]	0.960	0.989	0.577	1e-125
225441421	380	PREDICTED: non-structural maintenance of	0.928	0.989	0.570	1e-120
297739846	452	unnamed protein product [Vitis vinifera]	0.928	0.831	0.570	1e-120
449462613	415	PREDICTED: non-structural maintenance of	0.913	0.891	0.559	1e-115
15223745	403	Nse4, component of Smc5/6 DNA repair com	0.975	0.980	0.545	1e-113
297746396	406	unnamed protein product [Vitis vinifera]	0.903	0.901	0.529	1e-111
297852828	406	hypothetical protein ARALYDRAFT_474228 [	0.972	0.970	0.542	1e-108
224139808	313	predicted protein [Populus trichocarpa]	0.755	0.977	0.613	1e-107
242064364	353	hypothetical protein SORBIDRAFT_04g00646	0.827	0.949	0.557	1e-107

>gi|255578176|ref|XP_002529957.1| Non-structural maintenance of chromosome element, putative [Ricinus communis] gi|223530555|gb|EEF32434.1| Non-structural maintenance of chromosome element, putative [Ricinus communis]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/406 (62%), Positives = 311/406 (76%), Gaps = 18/406 (4%)

Query: 1   MRRAVKREAGSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRV 60
           M R+VK EA SS   RV+ + E  LR VKRE+LSRN     +++ + + +Q    V RRV
Sbjct: 1   MGRSVKGEAPSS---RVETARE--LRAVKRERLSRN----RVESSTQQPHQDDSVVDRRV 51

Query: 61  LRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITST 120
           LRSKYLA+ +KI  +RDDL +VDS KF TI+KEV++LH+ VQ+PREQVADAEALL I ST
Sbjct: 52  LRSKYLALYNKINVERDDLAQVDSDKFATIIKEVEDLHQHVQRPREQVADAEALLGIAST 111

Query: 121 LVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQG-NNNAQMSINWKDVGLAVSPFL 179
           LVTSVKSQSNEG T +DFVS LL  FG+SN   L ++G ++N+   INWKD+GL VSP  
Sbjct: 112 LVTSVKSQSNEGSTASDFVSGLLAAFGQSNRT-LGNEGIDDNSPTFINWKDIGLVVSPIF 170

Query: 180 SACHGCSTMLGPMKTEVKQRKVVV-RKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMF 238
             C+G STM+GPM TE+KQRK  V R +REKPT+ +QPEEVDDSEA +KTDTD NM+TMF
Sbjct: 171 KKCNGFSTMVGPMNTELKQRKAAVNRSRREKPTEKSQPEEVDDSEAEKKTDTDNNMSTMF 230

Query: 239 EILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSA 298
           EILRR K  RLE+LILNRRSFAQTVENLFALSFLVKDGRVEI V+  G HLV+PRNAP+A
Sbjct: 231 EILRRNKRARLENLILNRRSFAQTVENLFALSFLVKDGRVEIIVDGSGHHLVSPRNAPAA 290

Query: 299 DSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEG 358
            SVMSG+V Y HFVFR+DFKDWK+M D+VP G+ELMP R++S +   P+      N ++G
Sbjct: 291 SSVMSGEVAYRHFVFRFDFKDWKVMMDMVPQGDELMPDRKNSVSETEPET-----NISQG 345

Query: 359 ASRTTPIRKLSRNRGLVIREESVVEDSPEDDVAERSTRMLRCKRKI 404
            +  TPIRKL RNRGLV++E+SVVEDSPE + A +    LRC+RKI
Sbjct: 346 NTNRTPIRKLCRNRGLVVQEDSVVEDSPEIEAA-KGIGSLRCRRKI 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076058|ref|XP_002304893.1| predicted protein [Populus trichocarpa] gi|222842325|gb|EEE79872.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/407 (57%), Positives = 299/407 (73%), Gaps = 18/407 (4%)

Query: 1   MRRAVKREAGSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRV 60
           M R VKREAGS+S G   D +++  R +KRE+++R+     ++       +P   + RRV
Sbjct: 1   MSRTVKREAGSTSNGNPGDLNQEP-REMKRERVTRSRGKSGVE-------EPNQQMDRRV 52

Query: 61  LRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITST 120
           LRS Y  + ++I+D+RDDLTR D  +FNT++KEV++LH+ VQKPREQVADAEALL + +T
Sbjct: 53  LRSMYRTLQNRIKDKRDDLTRHDLDRFNTMIKEVEDLHKFVQKPREQVADAEALLGLANT 112

Query: 121 LVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLS 180
           LV+SVKSQSNEG+TP DFVS L+  FG+      S   + +A +SI WKD+GL VSP   
Sbjct: 113 LVSSVKSQSNEGITPADFVSHLIKEFGQQTR---SLDNDEDAPVSIKWKDLGLLVSPIFR 169

Query: 181 ACHGCSTMLGPMKTEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEI 240
            C G STMLGPM TE+KQRK  V +KR +P + A+PEEVDD+   +KTDTDKNM  +F+I
Sbjct: 170 RCTGVSTMLGPMNTELKQRKAAVHRKRTRPAEKARPEEVDDAGGEKKTDTDKNMKIIFDI 229

Query: 241 LRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADS 300
           L+ KKSVRLE+LILNRRSFA+TVENLFALSFLVKDGRV+I V+E G H V+PRNAP+  S
Sbjct: 230 LKEKKSVRLENLILNRRSFAETVENLFALSFLVKDGRVKIVVDESGCHFVSPRNAPAPSS 289

Query: 301 VMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGAS 360
           VMSG+V Y HFVFR+DF+DWKLMK VVP GEELMPHRESS A  V    +   NNTEG  
Sbjct: 290 VMSGEVAYRHFVFRFDFRDWKLMKGVVPDGEELMPHRESSGASQV----EPDANNTEGTR 345

Query: 361 RTTPIRKLSRNRGLVIREESVVEDSPEDDVAE---RSTRMLRCKRKI 404
             TPIRK SRNRGLV++E+SVV +   D   +   R+T ++RC+RK+
Sbjct: 346 SRTPIRKFSRNRGLVVQEDSVVVEDSPDIDDDVDARATGLMRCRRKL 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441421|ref|XP_002279026.1| PREDICTED: non-structural maintenance of chromosome element 4 [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/407 (57%), Positives = 289/407 (71%), Gaps = 31/407 (7%)

Query: 1   MRRAVKREAGSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRV 60
           M RAVKRE GSSSR   +++                GAD          +  Q   +RRV
Sbjct: 1   MVRAVKREVGSSSRANANEA----------------GAD---------NSGHQGVTERRV 35

Query: 61  LRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITST 120
           LRS+YLAV ++I D R+D+T+VDS KF +I+ EV++LH+ VQKPREQVADAEALLDIT+T
Sbjct: 36  LRSRYLAVKNQICDGREDITKVDSDKFKSIINEVESLHQQVQKPREQVADAEALLDITNT 95

Query: 121 LVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLS 180
           LVTSVK+  NEG+TP+DFVSCLL  FG++     S++   N   SI WKD+GL VS    
Sbjct: 96  LVTSVKAHGNEGITPSDFVSCLLQEFGQNPGVSTSAEDAGN---SIVWKDIGLVVSHIFK 152

Query: 181 ACHGCSTMLGPMKTEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEI 240
              GC TMLGPM TE+KQRK VV  KR +PT++A+PEE+DD+   EK+DTDKNM+ MF+I
Sbjct: 153 RASGCCTMLGPMNTEMKQRKPVVHNKRVRPTESARPEELDDTVVEEKSDTDKNMSIMFDI 212

Query: 241 LRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADS 300
           LR+ + VRLE+LILNR SFAQTVENLFALSFLVKDGR EI V+  G HLV+PRNAP+A++
Sbjct: 213 LRKNRRVRLENLILNRNSFAQTVENLFALSFLVKDGRAEITVDGRGCHLVSPRNAPAANA 272

Query: 301 VMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGAS 360
           V+SG+V Y+HFVFR+DFKDWKLM   V AGEELMP R S N     Q +  +      A+
Sbjct: 273 VVSGEVCYNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEECEAAAA 332

Query: 361 RTTPIRKLSRNRGLVIREESVVEDSPE-DDVAERST--RMLRCKRKI 404
            TTPIRKLSRNRGLV++E++VVEDSPE DD   R+   R  + KRK+
Sbjct: 333 PTTPIRKLSRNRGLVLQEQAVVEDSPESDDAGTRAAVIRKGKGKRKL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739846|emb|CBI30028.3| unnamed protein product [Vitis vinifera]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/407 (57%), Positives = 289/407 (71%), Gaps = 31/407 (7%)

Query: 1   MRRAVKREAGSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRV 60
           M RAVKRE GSSSR   +++                GAD          +  Q   +RRV
Sbjct: 73  MVRAVKREVGSSSRANANEA----------------GAD---------NSGHQGVTERRV 107

Query: 61  LRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITST 120
           LRS+YLAV ++I D R+D+T+VDS KF +I+ EV++LH+ VQKPREQVADAEALLDIT+T
Sbjct: 108 LRSRYLAVKNQICDGREDITKVDSDKFKSIINEVESLHQQVQKPREQVADAEALLDITNT 167

Query: 121 LVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLS 180
           LVTSVK+  NEG+TP+DFVSCLL  FG++     S++   N   SI WKD+GL VS    
Sbjct: 168 LVTSVKAHGNEGITPSDFVSCLLQEFGQNPGVSTSAEDAGN---SIVWKDIGLVVSHIFK 224

Query: 181 ACHGCSTMLGPMKTEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEI 240
              GC TMLGPM TE+KQRK VV  KR +PT++A+PEE+DD+   EK+DTDKNM+ MF+I
Sbjct: 225 RASGCCTMLGPMNTEMKQRKPVVHNKRVRPTESARPEELDDTVVEEKSDTDKNMSIMFDI 284

Query: 241 LRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADS 300
           LR+ + VRLE+LILNR SFAQTVENLFALSFLVKDGR EI V+  G HLV+PRNAP+A++
Sbjct: 285 LRKNRRVRLENLILNRNSFAQTVENLFALSFLVKDGRAEITVDGRGCHLVSPRNAPAANA 344

Query: 301 VMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGAS 360
           V+SG+V Y+HFVFR+DFKDWKLM   V AGEELMP R S N     Q +  +      A+
Sbjct: 345 VVSGEVCYNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEECEAAAA 404

Query: 361 RTTPIRKLSRNRGLVIREESVVEDSPE-DDVAERST--RMLRCKRKI 404
            TTPIRKLSRNRGLV++E++VVEDSPE DD   R+   R  + KRK+
Sbjct: 405 PTTPIRKLSRNRGLVLQEQAVVEDSPESDDAGTRAAVIRKGKGKRKL 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462613|ref|XP_004149035.1| PREDICTED: non-structural maintenance of chromosome element 4-like [Cucumis sativus] gi|449525500|ref|XP_004169755.1| PREDICTED: non-structural maintenance of chromosome element 4-like [Cucumis sativus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/384 (55%), Positives = 285/384 (74%), Gaps = 14/384 (3%)

Query: 25  LRTVKREKLSR---NGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTR 81
           LR  KRE+++R   N  +EN++ E  +    QD  +RRVLRS+YLAV+ +I ++R+DL++
Sbjct: 36  LRDSKRERVARERENSGEENMNEEVGQ----QDLTKRRVLRSRYLAVIHEISERREDLSK 91

Query: 82  VDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSC 141
            D  KFN I+ EV+ LH  VQKPREQVADAEAL DI ++LVTS++SQSNEGVTP+DFVSC
Sbjct: 92  -DLDKFNVIINEVEKLHEQVQKPREQVADAEALQDIANSLVTSIRSQSNEGVTPSDFVSC 150

Query: 142 LLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKV 201
           LL  F + N +  S + +    +S+NWKD+GL+VS      +GC TMLGPM  ++KQRK 
Sbjct: 151 LLREFADINGSINSEEQD---LVSVNWKDIGLSVSSIFMNGYGCRTMLGPMSNQLKQRKT 207

Query: 202 V-VRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFA 260
             V +KR +PT++++P EV+D+ +  KTDTDKNM  MF ILRR K+V+LE LILNR+SF 
Sbjct: 208 NNVPRKRVRPTESSRPAEVEDNGSEPKTDTDKNMGIMFGILRRNKTVKLEHLILNRKSFG 267

Query: 261 QTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDW 320
           QTVENLFALSFLVKDGR EI ++++G H V+P+NAP+  ++MS +V YSHFVFR+D+KDW
Sbjct: 268 QTVENLFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHSAIMSHEVNYSHFVFRFDYKDW 327

Query: 321 KLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGASRTTPIRKLSRNRGLVIREES 380
           K M D+VP GEELMPHR   N++ V Q E A+ N+      TTPIRKLSRNRGLV+  +S
Sbjct: 328 KPMVDMVPVGEELMPHRTFLNSVQVSQEEVAADNSESAGLPTTPIRKLSRNRGLVM--QS 385

Query: 381 VVEDSPEDDVAERSTRMLRCKRKI 404
           VVEDSP++     +T +LR KRK+
Sbjct: 386 VVEDSPDNGSQSGATAILRGKRKL 409

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223745|ref|NP_175525.1| Nse4, component of Smc5/6 DNA repair complex [Arabidopsis thaliana] gi|12320790|gb|AAG50545.1|AC079828_16 hypothetical protein [Arabidopsis thaliana] gi|28393397|gb|AAO42122.1| unknown protein [Arabidopsis thaliana] gi|29824223|gb|AAP04072.1| unknown protein [Arabidopsis thaliana] gi|332194504|gb|AEE32625.1| Nse4, component of Smc5/6 DNA repair complex [Arabidopsis thaliana]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/409 (54%), Positives = 292/409 (71%), Gaps = 14/409 (3%)

Query: 1   MRRAVKREAGSSSRGRVDDSSEQLLRTVKREKLSRNGADE-NLDNESTRTNQPQDTVQRR 59
           MR+ VKRE+ ++   R  D   + LR+VK+EK  +  AD    D       + Q    RR
Sbjct: 1   MRKTVKRESEATGGKREADDEPEKLRSVKKEKQRKTEADSVRPDEPPPPQEEEQGISDRR 60

Query: 60  VLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITS 119
           +LRSKYL++ ++I D +DDL ++DS KF+ I+  V+NLH+ V+KPREQ+ADAEALLDI +
Sbjct: 61  ILRSKYLSLQNEINDCKDDLMKIDSDKFSRIINAVENLHQQVRKPREQIADAEALLDIAN 120

Query: 120 TLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAV-SPF 178
           TL++SVKSQS  GV+P +FV+ L++ FG+ +   L    +  AQ+S+ WKD+G AV S  
Sbjct: 121 TLMSSVKSQSAHGVSPAEFVNALISGFGQGS---LGIDTDETAQVSLKWKDLGFAVCSTV 177

Query: 179 LSACHGCSTMLGPMKTEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMF 238
           L +C GCSTMLGPM TE+KQRK    +KR KP +  +P+EVDDS++ EKTDTDKNMT MF
Sbjct: 178 LVSC-GCSTMLGPMDTELKQRKRAPNRKRTKPGEGVRPDEVDDSQSEEKTDTDKNMTIMF 236

Query: 239 EILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSA 298
            IL +KK V+LE+L+LNRRSFAQTVENLFALSFL KDGRVEI V++ G H   PRNAP A
Sbjct: 237 NILGKKKRVQLENLVLNRRSFAQTVENLFALSFLAKDGRVEIIVDKSGSHFAMPRNAPDA 296

Query: 299 DSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRES-SNALPVPQAEQASYNNTE 357
           + VMSG+V Y+HFVFR DFKDWKLM ++VP GEELMPHR++   +   P A   +  +  
Sbjct: 297 NVVMSGEVIYNHFVFRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSCPAASAPASADFT 356

Query: 358 GASRTTPIRKLSRNRGLVIREESVVEDSP--EDDVAERSTRMLRCKRKI 404
             ++TTPIRKLSRNRGLV++EE+VVED+P  E D   R     RCKR++
Sbjct: 357 QDTQTTPIRKLSRNRGLVVQEETVVEDTPDKEGDGTRR-----RCKRRL 400

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746396|emb|CBI16452.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/404 (52%), Positives = 279/404 (69%), Gaps = 38/404 (9%)

Query: 25  LRTVKREKLSRNGADENL---DNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTR 81
           ++ + + ++     ++NL   D ESTR +Q Q T  RRVLRS+YLAV + I D+RDD++R
Sbjct: 1   MKRIPKSEVKPGKGNQNLHSEDTESTRHSQ-QGTADRRVLRSRYLAVKNLISDKRDDISR 59

Query: 82  VDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSC 141
           V S KF +I+ EV+NLH+ VQKPREQVADAEALLDI +TLVTSVKSQ+N GVTP+D V+C
Sbjct: 60  VGSDKFKSIISEVENLHQFVQKPREQVADAEALLDIANTLVTSVKSQTNAGVTPSDLVTC 119

Query: 142 LLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKV 201
            L+ +G+         G       I+WK +G+ VSP      GC TMLGPM TE+KQRKV
Sbjct: 120 FLSKYGQHGG------GFTTENPRIHWKKIGIVVSPIFRKGQGCCTMLGPMNTELKQRKV 173

Query: 202 VVRKKREK-PTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFA 260
            V +KR + PT++ +PEE+++     ++DTDKNM TMFEILRRKK V+LESL+LNR+SFA
Sbjct: 174 AVHQKRSRQPTESTRPEELNNYGEEHRSDTDKNMATMFEILRRKKQVKLESLMLNRKSFA 233

Query: 261 QTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDW 320
           +TVENLFALSFLVKDGR E+ V+E+G HLV+P+NAP+A SV++ +V YSHFVFR+DFKDW
Sbjct: 234 RTVENLFALSFLVKDGRAEVVVDENGSHLVSPKNAPAASSVVAREVVYSHFVFRFDFKDW 293

Query: 321 K--------------------LMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTEGAS 360
           K                    LM D+VPAGEELMPHR+ S  L   QA  A  N+ +   
Sbjct: 294 KSFVLQYLNLQLFIGIDVSQYLMMDLVPAGEELMPHRDRSKGLNASQAGLAP-NDYQDTL 352

Query: 361 RTTPIRKLSRNRGLVIREESVVEDSPE-DDVAERSTRMLRCKRK 403
             TPI+K SRN GLVI+E+ VV++ P+  D A R     RC ++
Sbjct: 353 HATPIKKFSRNCGLVIQEQLVVKEDPDTGDAAGR-----RCSKR 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852828|ref|XP_002894295.1| hypothetical protein ARALYDRAFT_474228 [Arabidopsis lyrata subsp. lyrata] gi|297340137|gb|EFH70554.1| hypothetical protein ARALYDRAFT_474228 [Arabidopsis lyrata subsp. lyrata]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/415 (54%), Positives = 294/415 (70%), Gaps = 21/415 (5%)

Query: 1   MRRAVKREA---GSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQ 57
           MR+ VKRE+   G S   R  D   + LR+VK+EK  + GA     +E   T + +  + 
Sbjct: 1   MRKTVKRESEAPGGSGGKREADEEPERLRSVKKEKQRKAGAGFVRPDEPPPTQEEEQGIS 60

Query: 58  -RRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLD 116
            RR+LRSKYL++ ++I D +DDL ++DS KF+ I+ EV+NLH+ V+KPREQ+ADAEALLD
Sbjct: 61  DRRILRSKYLSLQNEINDSKDDLMKIDSDKFSRIINEVENLHKQVRKPREQIADAEALLD 120

Query: 117 ITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAV- 175
           I +T+++SVKSQS  GV+P +FV+ L++ FG+ +   L    +  AQ+S+ WKD+G AV 
Sbjct: 121 IANTVMSSVKSQSAHGVSPAEFVNALVSGFGQGS---LGIDTDETAQVSLKWKDLGFAVC 177

Query: 176 SPFLSACHGCSTMLGPMKTEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMT 235
           S  L +C GCSTMLGPM TE+KQRK    +KR KP +  +P+EVDDS++ EKTDTDKNM 
Sbjct: 178 STVLVSC-GCSTMLGPMDTELKQRKRAANRKRTKPGEGVRPDEVDDSQSEEKTDTDKNMA 236

Query: 236 TMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNA 295
            MF IL +K+ VRLE+L+LNRRSFAQTVENLFALSFL KDGRVEI V++ G H   PRN 
Sbjct: 237 IMFTILGKKRRVRLENLVLNRRSFAQTVENLFALSFLAKDGRVEIIVDKSGSHFALPRNG 296

Query: 296 PSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNN 355
           P A  VMSG+V Y+HFVFR DFKDWKLM ++VP G+ELMPHRE++ A     A  A +  
Sbjct: 297 PDAILVMSGEVIYNHFVFRLDFKDWKLMSEMVPLGQELMPHRETAVASSSCPAASADFTQ 356

Query: 356 TEGASRTTPIRKLSRNRGL------VIREESVVEDSPEDDVAERSTRMLRCKRKI 404
               ++TTPIRKLSRNRGL      V+ EE+VVED+P+ +  E  TR  RCKRK+
Sbjct: 357 D---TQTTPIRKLSRNRGLVVQEETVVEEETVVEDTPDTNGDE--TRR-RCKRKL 405

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139808|ref|XP_002323286.1| predicted protein [Populus trichocarpa] gi|222867916|gb|EEF05047.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/323 (61%), Positives = 245/323 (75%), Gaps = 17/323 (5%)

Query: 74  DQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGV 133
           D R+D+ RVDS KFN+I+ +V++LH+ VQKPREQVADAEALLDIT++LV SVK+  ++GV
Sbjct: 1   DGREDVERVDSDKFNSIINQVEDLHKLVQKPREQVADAEALLDITNSLVASVKAHGHDGV 60

Query: 134 TPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMK 193
           TP+DFV+ LL  FG  +    S+ G+ N    I WKD+G+AVS   S+C GC TM+GPM 
Sbjct: 61  TPSDFVNGLLRDFGRQDGPSTSTDGSRNL---IAWKDIGVAVSHIFSSCPGCCTMVGPMD 117

Query: 194 TEVKQRKVVVRKKREKPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLI 253
           TE+KQRK VV ++R +PT + QPEEV+DS A E+TDTDKNM TMF IL+ K+SV+LE+L+
Sbjct: 118 TELKQRKAVVGRRRTRPTGSVQPEEVNDSGAKERTDTDKNMATMFSILKNKRSVKLENLV 177

Query: 254 LNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVF 313
           LNR SFAQTVENLFALSFLVKDGR EI VNE+G+HLV+PRNAP A  V+SG+V Y HFVF
Sbjct: 178 LNRNSFAQTVENLFALSFLVKDGRAEIKVNENGWHLVSPRNAPDAGKVVSGEVAYRHFVF 237

Query: 314 RYDFKDWKLMKDVVPAGEELMPHRESSN------ALPVPQAEQASYNNTEGASRTTPIRK 367
           R+DFKDWKLM   V  GEELMP+R   N      A P+P   QA          TTPIRK
Sbjct: 238 RFDFKDWKLMISAVEVGEELMPNRNQINMPSDSLADPIPVETQA-------GGPTTPIRK 290

Query: 368 LSRNRGLVIREESVVEDS-PEDD 389
            SRNRGLV++E++VVEDS PE+D
Sbjct: 291 FSRNRGLVLQEKTVVEDSTPEND 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242064364|ref|XP_002453471.1| hypothetical protein SORBIDRAFT_04g006460 [Sorghum bicolor] gi|241933302|gb|EES06447.1| hypothetical protein SORBIDRAFT_04g006460 [Sorghum bicolor]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/350 (55%), Positives = 261/350 (74%), Gaps = 15/350 (4%)

Query: 53  QDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAE 112
           Q TV+RR+LRS+Y AV S I D+RD++ R DS +F  I+++V  LH  VQKPREQ+ADAE
Sbjct: 13  QGTVERRMLRSRYHAVKSLISDERDEMARADSDRFTAIIQQVDCLHELVQKPREQIADAE 72

Query: 113 ALLDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVG 172
           ALL I STLVTSV+SQS+EG+TP+DF++ LL  FG+  S        ++  +S+ W D+G
Sbjct: 73  ALLGIASTLVTSVRSQSSEGITPSDFITALLKKFGQQGSL-------DDEAVSLQWGDLG 125

Query: 173 LAVSPFLSACHGCSTMLGPMKTEVKQRKV--VVRKKREKPTQTAQPEEVDDSEAVEKTDT 230
           L+VS       GC TMLGPM TEVKQRKV  V RK+  +PT+   PEE+ DS    K+DT
Sbjct: 126 LSVSHIFRPMPGCCTMLGPMDTEVKQRKVAAVGRKRTARPTENTCPEELADSSEEVKSDT 185

Query: 231 DKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLV 290
           D+N+  +F++LRRKKS +LE+L+LNR SFAQTVEN+FALSFLVKDGRVEI ++++G H+V
Sbjct: 186 DRNVLVIFDVLRRKKSAKLENLVLNRLSFAQTVENIFALSFLVKDGRVEINIDDNGHHIV 245

Query: 291 APRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQ 350
            PRNAP+A ++ SG+V YSHFVFR+DFKDWKLMK+ V  GEEL+PHR S +AL      +
Sbjct: 246 RPRNAPAASAIASGEVSYSHFVFRFDFKDWKLMKEAVKEGEELLPHRTSQSAL----CNE 301

Query: 351 ASYN-NTEGASRTTPIRKLSRNRGLVIREESVVEDSPEDDVAERSTRMLR 399
            +Y  N E  ++ TPIRKLSRNRGL++ +++VVE++PE++ A +  R+ R
Sbjct: 302 ENYQPNMEARAQVTPIRKLSRNRGLIL-QDNVVEETPEENQASKRRRLFR 350

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2026047	403	AT1G51130 "AT1G51130" [Arabido	0.975	0.980	0.506	6.6e-97
TAIR|locus:2091896	383	AT3G20760 "AT3G20760" [Arabido	0.834	0.882	0.484	2.2e-80
DICTYBASE|DDB_G0281991	367	DDB_G0281991 "Non-structural m	0.701	0.773	0.254	1.8e-17
POMBASE|SPBC20F10.04c	300	nse4 "Smc5-6 complex non-SMC s	0.666	0.9	0.237	3.9e-15
ASPGD|ASPL0000073809	439	AN4710 [Emericella nidulans (t	0.222	0.205	0.425	1.4e-11
ZFIN|ZDB-GENE-050522-111	346	nsmce4a "non-SMC element 4 hom	0.693	0.812	0.224	2.9e-11
UNIPROTKB|F1NV66	386	NSMCE4A "Uncharacterized prote	0.624	0.655	0.223	3.3e-10
UNIPROTKB|F1SEH7	377	NSMCE4A "Uncharacterized prote	0.693	0.745	0.207	9.9e-10
UNIPROTKB|Q2TBI1	382	NSMCE4A "Non-structural mainte	0.745	0.790	0.203	1.2e-09
CGD|CAL0005775	371	orf19.4161 [Candida albicans (	0.350	0.382	0.279	5.4e-09

TAIR|locus:2026047 AT1G51130 "AT1G51130" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 207/409 (50%), Positives = 274/409 (66%)

Query:     1 MRRAVKREAXXXXXXXXXXXXEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQ-RR 59
             MR+ VKRE+             + LR+VK+EK  +  AD    +E     + +  +  RR
Sbjct:     1 MRKTVKRESEATGGKREADDEPEKLRSVKKEKQRKTEADSVRPDEPPPPQEEEQGISDRR 60

Query:    60 VLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITS 119
             +LRSKYL++ ++I D +DDL ++DS KF+ I+  V+NLH+ V+KPREQ+ADAEALLDI +
Sbjct:    61 ILRSKYLSLQNEINDCKDDLMKIDSDKFSRIINAVENLHQQVRKPREQIADAEALLDIAN 120

Query:   120 TLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAV-SPF 178
             TL++SVKSQS  GV+P +FV+ L++ FG+ +   L    +  AQ+S+ WKD+G AV S  
Sbjct:   121 TLMSSVKSQSAHGVSPAEFVNALISGFGQGS---LGIDTDETAQVSLKWKDLGFAVCSTV 177

Query:   179 LSACHGCSTMLGPMXXXXXXXXXXXXXXXXXPTQTAQPEEVDDSEAVEKTDTDKNMTTMF 238
             L +C GCSTMLGPM                 P +  +P+EVDDS++ EKTDTDKNMT MF
Sbjct:   178 LVSC-GCSTMLGPMDTELKQRKRAPNRKRTKPGEGVRPDEVDDSQSEEKTDTDKNMTIMF 236

Query:   239 EILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSA 298
              IL +KK V+LE+L+LNRRSFAQTVENLFALSFL KDGRVEI V++ G H   PRNAP A
Sbjct:   237 NILGKKKRVQLENLVLNRRSFAQTVENLFALSFLAKDGRVEIIVDKSGSHFAMPRNAPDA 296

Query:   299 DSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRES---SNALPVPQAEQASYNN 355
             + VMSG+V Y+HFVFR DFKDWKLM ++VP GEELMPHR++   S++ P   A  AS + 
Sbjct:   297 NVVMSGEVIYNHFVFRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSCPAASAP-ASADF 355

Query:   356 TEGASRTTPIRKLSRNRGLVIRXXXXXXXXXXXXXXXRSTRMLRCKRKI 404
             T+  ++TTPIRKLSRNRGLV++                 TR  RCKR++
Sbjct:   356 TQD-TQTTPIRKLSRNRGLVVQEETVVEDTPDKEGD--GTRR-RCKRRL 400

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091896 AT3G20760 "AT3G20760" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 169/349 (48%), Positives = 232/349 (66%)

Query:     1 MRRAVKREAXXXXXXXXXXXXEQLLRT---VKREKLSRNG-ADENLDNESTRTNQPQDTV 56
             MR +VK E             ++   T   VK+EK S+   A         +  + Q   
Sbjct:     1 MRNSVKWETELTGDRSRRREADESSETPKIVKKEKRSKTVIASLRPQQPPIQEEEEQGIA 60

Query:    57 QRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLD 116
              RR +RS+YLA+  KI+D +DDLT++DS KFN+I+ EV+NLH+ V+KPREQ+ADAEALLD
Sbjct:    61 DRRAIRSQYLALTHKIKDAKDDLTKIDSNKFNSIINEVENLHQKVRKPREQIADAEALLD 120

Query:   117 ITSTLVTSVKSQS-NEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAV 175
             +T+++V+SVKSQS + GV+P +FV+ L+  FG+++   L    + N Q+S+ WKD+G  V
Sbjct:   121 LTNSVVSSVKSQSAHGGVSPAEFVNALINGFGKTS---LRIDADENTQVSMKWKDLGFTV 177

Query:   176 -SPFLSACHGCSTMLGPMXXXXXXXXXXXXXXXXX-PTQTAQPEEVDDSEAVEKTDTDKN 233
              S  L +C GC+TM+GPM                  P    +PEEVDD+EA +K+DTD N
Sbjct:   178 CSTVLVSC-GCTTMMGPMYSEMKQRKSRVGNRKRTKPGAGVKPEEVDDTEAEKKSDTDNN 236

Query:   234 MTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPR 293
             M  MF ILR+ K V++E+L+LNR+SFAQT EN+FALSFLVKDGRVEI V+ +G H V PR
Sbjct:   237 MAVMFNILRKNKRVKIENLVLNRKSFAQTAENMFALSFLVKDGRVEITVDNNGSHFVEPR 296

Query:   294 NAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRESSNA 342
             NAP+A+ V+SG+V Y+HFV R+D+KDW+ M  +V  GEELMP RE+  A
Sbjct:   297 NAPAANLVLSGEVAYNHFVLRFDYKDWEPMSKMVAVGEELMPLRETKVA 345

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0281991 DDB_G0281991 "Non-structural maintenance of chromosomes element 4 homolog A" [Dictyostelium discoideum (taxid:44689)]

 Score = 231 (86.4 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 75/295 (25%), Positives = 121/295 (41%)

Query:    39 DENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLH 98
             DE+ +++     Q Q   +RR LR KY  ++  +   + +L    S      LK+  NL+
Sbjct:    41 DESPNSKKVVKKQQQTIGERRELRKKYRTLIQDVSGNKSELILPSSDGLLRSLKKADNLY 100

Query:    99 RDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTDFVSC-LLTMFGESNSNRLSSQ 157
              +V + RE V D+E LL + S     V+      V+   F S  L+  + E  +      
Sbjct:   101 NNVLQAREAVLDSE-LLALASQF--GVEQAQKFKVSLNGFDSFGLVNRYKERLTFYTDEN 157

Query:   158 GNNNAQMS-INWKDVGLAVSPFLSACHGCSTMLGPMXXXXXXXXXXX---XXXXXXPTQT 213
              NNN+ ++   W+ +                M GP+                    P   
Sbjct:   158 NNNNSTINKTGWEKLSQLYHTHFHTVPDFDFMYGPINFEPEEKKVRAPRKLTQKDQPVGA 217

Query:   214 AQPEE--VDDSEAVEKTDTDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSF 271
             A+  E   D S  VE   T   +  M + + +        L+++  SFAQTVEN+F  SF
Sbjct:   218 AKHAEKITDTSNQVESETTSSRVQVMKQYIEKNPGKSFIDLVVDETSFAQTVENIFYFSF 277

Query:   272 LVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDV 326
             L+KDG V+IA +     ++     P      S   + +H V + DF  W  +KD+
Sbjct:   278 LLKDGHVKIAKDNEEM-IIQTTLPPEEKDYQSKNAQLTHSVVKLDFNTWNDLKDI 331

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPBC20F10.04c nse4 "Smc5-6 complex non-SMC subunit Nse4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 207 (77.9 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 68/286 (23%), Positives = 128/286 (44%)

Query:    55 TVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEAL 114
             ++ +R LR +Y  +++K+Q+ R +L   ++      +    +L   V  P E   DA  L
Sbjct:     3 SIDKRDLRKRYRNLINKVQESRLELVDEENNNLYETITTANDLFSSVDAPTEATLDA--L 60

Query:   115 LDITSTL-VTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSIN--WKDV 171
             L +T T+ + S+K++      P   +  L T   +   N  +S  N      I+  W  +
Sbjct:    61 L-LTKTVDLASIKARQLHIGRPKFNIE-LFTKNIKQFLNYPTSHSNVTRIQEIDTAWSRL 118

Query:   172 GLAVSPFLSACHGCSTMLGPMXXXXXXXXXXXXXXXX-XPTQTAQPEEVDDSE-AVEKTD 229
             G   S         + M+GP+                  P    QP  +++     ++ +
Sbjct:   119 GKLASNCEKQPASLNLMVGPLSFRKKERNIQRRERLQKAPNVLTQPTMLNERNITTQENN 178

Query:   230 TDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHL 289
             T KN+  +  +L+  + V     I N +S+ QTVENLF +SFL K+G+  +  NE G  +
Sbjct:   179 TTKNVLHISRLLQAHQPVNFLKFITNPQSYPQTVENLFYVSFLFKEGKAALVENESGILM 238

Query:   290 VAPRNAPSADSVMSGQVKYSHFVFR-----YD--FKDWKLMKDVVP 328
             +  R  P+ D V++G+++    V       Y+   K++ + + ++P
Sbjct:   239 LETRIPPTDDQVVAGEIRNIQLVLDMTMDLYENIIKEYNIKESIIP 284

GO:0000724 "double-strand break repair via homologous recombination" evidence=IGI

GO:0000790 "nuclear chromatin" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0006302 "double-strand break repair" evidence=IGI;IMP

GO:0030915 "Smc5-Smc6 complex" evidence=IDA

GO:0043596 "nuclear replication fork" evidence=TAS

GO:0048478 "replication fork protection" evidence=IC

ASPGD|ASPL0000073809 AN4710 [Emericella nidulans (taxid:162425)]

 Score = 157 (60.3 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 40/94 (42%), Positives = 53/94 (56%)

Query:   247 VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRN--APSADSVMSG 304
             V L +  +N +SF Q+VENLF LSFLV+DG V I+ +  G   + P    APS ++   G
Sbjct:   336 VPLANFCINPKSFGQSVENLFYLSFLVRDGTVGISTDSRGLPTLHPTKPLAPS-EAQRRG 394

Query:   305 QVKYSHFVFRYDFKDWKLMKDVVPAGEELMPHRE 338
               K+   VF  DF  WK M D     E ++PHRE
Sbjct:   395 VQKHQS-VFSLDFDTWKDMIDAYNIKECIIPHRE 427

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

ZFIN|ZDB-GENE-050522-111 nsmce4a "non-SMC element 4 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 68/303 (22%), Positives = 129/303 (42%)

Query:    49 TNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQV 108
             + +  D  +RR +RSKY  +++++Q  R+D+    + K   +L+E   L  +V++ RE  
Sbjct:    48 SQEDDDPSRRREIRSKYRDLINEVQQNREDMLNPANNKLTDVLEEANKLFANVRQAREAA 107

Query:   109 ADAEALLDITSTLVTSVKSQSN-EGVT--PTDFVSCLLTMFGESN--SNRLSSQGNNNAQ 163
              DA+ LL + + L     SQ + EG +  P+ F   LL+ F + N   +   + GN    
Sbjct:   108 LDAQ-LLVLATDLGKEKASQLHAEGSSFDPSAFAEHLLS-FMDLNRLEDESGTDGNLGGY 165

Query:   164 MSIN-WKDVGLAVSPFLSACHGCSTMLGPMXXXXXXXXXXXXXXXXXPTQTAQ---PEEV 219
             +    W  +                MLG                   P++  +   P ++
Sbjct:   166 LPGGAWLKLAKRAENCFRTAPAFHYMLGSFLAEPPPPRQRVERQRRVPSREEKRIMPTQL 225

Query:   220 DDSEAVEKTDTDKNMTTMFEILRR------KKSVRLESLILNRRSFAQTVENLFALSFLV 273
                E   +  T+K +  +   L+R      ++ +     +++  SF++TVEN+F +SFL+
Sbjct:   226 KKMEESHQEATEKEVERILGCLQRYFKDDSEEPISYYEFVIDPNSFSRTVENIFHMSFLI 285

Query:   274 KDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSH-FVFRYDFKDWKLMKDVVPAGEE 332
             +DG   + + E+G   +AP        +  G     H  V     + W+ + D     + 
Sbjct:   286 RDGLARMYL-ENGLPYIAP---VEEGEIQPGGAAIRHQCVISISQESWREIIDAFDIKQA 341

Query:   333 LMP 335
             L+P
Sbjct:   342 LIP 344

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|F1NV66 NSMCE4A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 62/277 (22%), Positives = 112/277 (40%)

Query:    39 DENLDNESTRTNQPQ------DTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILK 92
             D+  + ES R   P       D   RR++R++Y  ++  +Q  R+D+    S +    L+
Sbjct:    58 DDGEEPESERPRPPGSSEGGGDERHRRLIRNQYRELICSVQQNREDMLSSKSNRLTEALE 117

Query:    93 EVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQSNEGVTPTD---FVSCLLTMFG-- 147
             E   L   V + RE   DA+ L+ + S L     ++    +T  D   F   LLT  G  
Sbjct:   118 EANQLFSGVSRAREAALDAQFLV-LASNLGKEKANELRSEITTFDSLTFAEDLLTFMGIN 176

Query:   148 --ESNSNRLSSQGNNNAQMSIN-WKDVGLAVSPFLSACHGCSTMLGPMXXXXXXXXXXXX 204
               E+  N   S+  +   +  N W  +G     +         MLG              
Sbjct:   177 RTETEGNDSDSESMSGGYLPSNAWYKLGEEAEKYFRRAPSFHYMLGSFKSEPPMPRQRIE 236

Query:   205 XXXXXP---TQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRK------KSVRLESLILN 255
                  P    + A P ++   E   +  T K +  +  +L+          +    L+++
Sbjct:   237 RQRKAPGGEEKRAMPAQLKKMEESHQEATAKEVERILGLLQTHFRNDPCTPIFFFDLVVD 296

Query:   256 RRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAP 292
               SFA+TVEN+F +SF+++DG   + +++    ++ P
Sbjct:   297 PNSFARTVENIFHVSFILRDGLARLKLDDDKLPVIEP 333

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

UNIPROTKB|F1SEH7 NSMCE4A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 166 (63.5 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
 Identities = 63/304 (20%), Positives = 126/304 (41%)

Query:    36 NGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQ 95
             +  DE +D  S            R +R +Y A+++ +Q  R+D+    S K   +L+E  
Sbjct:    60 DSGDELMDPASLEAETDHGLC--RQIRHQYRALINSVQQNREDILNA-SDKLTQVLEEAN 116

Query:    96 NLHRDVQKPREQVADAEALL---DITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGES--N 150
              L   V + RE V DA  L+   D+       ++S  N       +V  LLT  G +   
Sbjct:   117 TLFNGVSRAREAVLDAHFLVLASDLGKEKAKQLRSDLNS-FDMLRYVETLLTHMGVNPLE 175

Query:   151 SNRL-SSQGNNNAQMSI--NWKDVGLAVSPFLSACHGCSTMLGPMXXXXXX---XXXXXX 204
             +  L   + +++ +  +  +WK  G       +  H    +LG +               
Sbjct:   176 AEELVRDEDSSDFEFIVYDSWKISGKTAENTFNKTHTFHFLLGSIQGEGPVPKPRIDRPK 235

Query:   205 XXXXXPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRR------KKSVRLESLILNRRS 258
                    + A P E+   E   +  T+K +  +  +L+          +     +++  S
Sbjct:   236 KARMIEEKQAMPAELKRMEQSHQEATEKEVERILGLLQTYFQEDPDTPMSFFDFVVDPHS 295

Query:   259 FAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSV-MSGQVKYSHFVFRYDF 317
             F +TVEN+F +SF+++DG   I +++    ++ P N   +D +  + Q++ +  V    +
Sbjct:   296 FPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEPVNINESDGIDQNTQIR-NQAVIALSY 354

Query:   318 KDWK 321
             ++W+
Sbjct:   355 REWE 358

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=IEA

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q2TBI1 NSMCE4A "Non-structural maintenance of chromosomes element 4 homolog A" [Bos taurus (taxid:9913)]

 Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 66/325 (20%), Positives = 133/325 (40%)

Query:    36 NGADENLDNESTRTNQPQDTVQRRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQ 95
             +  DE +D  S    +  D    R +R +Y A+++ +Q  R+D+    S K   +L+E  
Sbjct:    62 DSGDEMIDPASLE--EETDPSLCRQIRHQYRALINSVQQNREDILNA-SDKLTEVLEEAN 118

Query:    96 NLHRDVQKPREQVADAEALL---DITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESN-- 150
              L   V + RE V DA  L+   D+       ++S  N       +V  LLT  G +   
Sbjct:   119 TLFNGVSRAREAVLDAHFLVLASDLGKEKAKQLRSDLNS-FDMLRYVETLLTHMGVNPLE 177

Query:   151 -SNRLSSQGNNNAQMSI--NWKDVGLAVSPFLSACHGCSTMLGPMXXXXXX---XXXXXX 204
                 +  + +++ +  +  +WK  G       +  H    +LG +               
Sbjct:   178 AEELIRDEDSSDLEFIVYDSWKISGKTAENTFNKTHTFHFLLGSIQGECPVPKPRIERPR 237

Query:   205 XXXXXPTQTAQPEEVDDSEAVEKTDTDKNMTTMFEILRR------KKSVRLESLILNRRS 258
                    Q A P ++   E   +  T+K +  +  +L+          +     +++  S
Sbjct:   238 KVRMIEEQQAMPAQLKRMEESHQEATEKEVERILGLLQTYFQEDPDTPMSFFDFVVDPHS 297

Query:   259 FAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFK 318
             F +TVEN+F +SF+++DG   I ++     ++ P N  + +S  + Q++ +  +    ++
Sbjct:   298 FPRTVENIFHVSFIIRDGFARIRLDRDRLPVIEPVNI-NEESGGNTQIR-NQAIIALSYR 355

Query:   319 DWKLMKDVVPAGEELMPHRESSNAL 343
             DW+ +       E ++   +S   L
Sbjct:   356 DWEEIVRTFEISEPVITSSQSQQRL 380

GO:0030915 "Smc5-Smc6 complex" evidence=ISS

GO:2001022 "positive regulation of response to DNA damage stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0000781 "chromosome, telomeric region" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

CGD|CAL0005775 orf19.4161 [Candida albicans (taxid:5476)]

 Score = 160 (61.4 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 43/154 (27%), Positives = 74/154 (48%)

Query:   212 QTAQPEEVDDSEAVEKTDTDKNMTTMFEILRRK---KSVRLESLILNRRSFAQTVENLFA 268
             +TA+  +  D    ++ +T   + ++++    K     V L    +N RSF Q+VENLF 
Sbjct:   208 KTARQVQASDISGNQEQNTANMVKSVYQTYIEKYDGNGVNLFKFFINPRSFGQSVENLFY 267

Query:   269 LSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKY-----SHFVFRYDFKDWKLM 323
              SFLVKDGR+++ VN  G   +      S+D +   Q++      SH +  +++K WK  
Sbjct:   268 TSFLVKDGRLKLYVNNDGVPCI---QRVSSDEIREAQLESNKIFASHHIASFNYKAWKKY 324

Query:   324 KDVVPAGEELMPHRESSNALPVPQAEQASYNNTE 357
               +    E  + HR+      +P  +   YN+ E
Sbjct:   325 TQLYNIREAFLGHRDEPED-QMPPEDIIDYNDEE 357

GO:0003674 "molecular_function" evidence=ND

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
pfam08743	305	pfam08743, Nse4, Nse4	2e-73
COG5125	259	COG5125, COG5125, Uncharacterized conserved protei	9e-09

>gnl|CDD|219999 pfam08743, Nse4, Nse4

 Score =  231 bits (591), Expect = 2e-73
 Identities = 97/303 (32%), Positives = 152/303 (50%), Gaps = 23/303 (7%)

Query: 58  RRVLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALL-- 115
           RR LR  Y  ++++++D RD+L    S K    +++   L ++V++ RE V DAE L+  
Sbjct: 3   RRELRKDYRELINEVEDNRDELVNPSSDKLREAIEKANELFQNVKQTREAVLDAELLVSA 62

Query: 116 -DITSTLVTSVKSQSNEGVTPTDFVSCLLTMFG---------ESNSNRLSSQGNNNAQMS 165
            D+       + S S  G+   +FVS  ++  G         E  S +L+   +++    
Sbjct: 63  ADLAKKKAKQLTSGSLNGIDVDEFVSKCISFMGRGTVEDDEAEDTSVQLTEDSDDDVGDM 122

Query: 166 INWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKRE--KPTQTAQPEEVDDSE 223
           ++W  +G    P      G   +LGP+  E K RK   R+ RE  KP Q  +P E+ + E
Sbjct: 123 LDWAKLGRLACPHFRRPPGFGFLLGPLSVEPKVRKQRQRRARERKKPGQEVRPTELRELE 182

Query: 224 AVEKTDTD-----KNMTTMFEILRRK----KSVRLESLILNRRSFAQTVENLFALSFLVK 274
           A ++ DT+     KN+  +   L++       V L   ++N  SF QTVEN+F LSFLV+
Sbjct: 183 AKKQEDTELTTMCKNIERILGRLQKYSQDEGPVSLFDFVINPNSFGQTVENIFYLSFLVR 242

Query: 275 DGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELM 334
           DG V+I V+E G  L+ PR  P A  V SG    +  V   D++ W+ + D     E L+
Sbjct: 243 DGMVKIEVDEDGLPLLEPRKPPEASEVQSGGAARNQAVLSLDYETWEDIVDAYNIKEPLI 302

Query: 335 PHR 337
           PHR
Sbjct: 303 PHR 305

Nse4 is a component of the Smc5/6 DNA repair complex. It forms interactions with Smc5 and Nse1. Length = 305

>gnl|CDD|227454 COG5125, COG5125, Uncharacterized conserved protein [Function unknown]

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 188 MLGPMKTEVKQRKVVVRKKREK-PTQTAQPE-EVDDSEAVEKT--DTDKNMTTMFEILRR 243
           M GP+    K R+   R++ +   ++   PE EV  +   ++   +  K +  +  +L  
Sbjct: 116 MRGPLSFSKKHREAPSRRRAQSQRSRQTLPETEVPTNITRQEDSVEEPKILAQISRLLAE 175

Query: 244 KKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMS 303
           K        I++ RSF++T+ENLF LSFL+K+G+  +  +E G   V    +  A +   
Sbjct: 176 KGRTNYFKFIIDPRSFSKTIENLFYLSFLLKEGKAFLEFDEDGTLYVVSEGSEGAST--- 232

Query: 304 GQVKYSHFVFRYDFKDWK 321
                 H V    + ++ 
Sbjct: 233 -----GHLVVEMTYDEYL 245

Length = 259

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
KOG2866	349	consensus Uncharacterized conserved protein [Funct	100.0
PF08743	93	Nse4_C: Nse4 C-terminal; InterPro: IPR014854 Nse4	100.0
COG5125	259	Uncharacterized conserved protein [Function unknow	100.0
PF15412	56	Nse4-Nse3_bdg: Binding domain of Nse4/EID3 to Nse3	97.55

>KOG2866 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-55  Score=432.43  Aligned_cols=333  Identities=35%  Similarity=0.573  Sum_probs=278.7

Q ss_pred             Ccccccccc---CCCCCCCCCCchhHHHHHHHHHhhhcCCCCccccCccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhH
Q 015540            1 MRRAVKREA---GSSSRGRVDDSSEQLLRTVKREKLSRNGADENLDNEST-RTNQPQDTVQRRVLRSKYLAVLSKIQDQR   76 (405)
Q Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dp~Q~~~eRR~LR~~YR~L~~~i~~~r   76 (405)
                      ||+++|||.   |.++..|.++..++.++.|+.|.++++++....-..+. -...+|.+.+||.||+.|+.|+++++..+
T Consensus         1 ~~~s~~~~~e~~g~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~i~s~~~~l~~~~q~~K   80 (349)
T KOG2866|consen    1 MRKSVKREPEITGKSRVVRRDRMDSESPSRVKKEPRSKTLCAQPRRDDPPEQLEERQEISDRRAIRSQYLALQNSSQDLK   80 (349)
T ss_pred             CCCccccCcccCCCccccccccccccCccccccchhhhhhhcccCcCCCCcccccccchhHHHHHHHHHHHHHHHHHhhH
Confidence            799999998   66666699999999999999999999999887542221 13445678899999999999999999999


Q ss_pred             HhhcccCchHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHhcCCCCCccc
Q 015540           77 DDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQS-NEGVTPTDFVSCLLTMFGESNSNRLS  155 (405)
Q Consensus        77 ~dl~~~~s~~l~e~L~ead~Lf~~Vk~prEa~lDAe~L~~la~~l~~s~k~~~-~~g~d~~dFvskLl~~~g~~~~~~~~  155 (405)
                      +++.....+.+.++++.+++||+.|..++|+++||++++.+|.....+++.+. ..+..+.+++..+..-|+..+..+.-
T Consensus        81 ~d~~~~~~~~~neI~~~v~~l~qe~~~~~e~i~da~~~l~~a~~~is~~~k~~~~~s~~~~~d~~~~~~~f~~~~~ri~~  160 (349)
T KOG2866|consen   81 DDLDKADVDKENEILNEVENLHQEVRLPREDIADAENLLDLAASDISKAKKQRATDSVSDVEDTNALMSSFKLTSLRISH  160 (349)
T ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhhccCcCchhHHHHHhhcccchhhhhhc
Confidence            99999989999999999999999999999999999999887766555555443 45688888888877666654443321


Q ss_pred             CCC--CCCccccCCHHHHHhhhcccccCCCCCccccCCCCcccccccccccc--ccCCCCcccCCcccccc-hhhhccch
Q 015540          156 SQG--NNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRK--KREKPTQTAQPEEVDDS-EAVEKTDT  230 (405)
Q Consensus       156 ~d~--dd~~~~~~~W~kLG~~a~~~fr~~P~~~fLlGPL~~E~K~Rk~~qR~--r~~k~~~~~~Peel~~~-d~~~k~~T  230 (405)
                      +..  +-..+..+.|+.+|..++.++...++|+||+||+++|.|+|+.+.|+  +..++.+.+.|++|.+. ...++++|
T Consensus       161 d~n~~d~~~~~~~~w~~~gf~~~~~~~~s~~~~~mvgp~~~e~k~r~~~r~r~r~q~~~~~~a~p~~~~~~~~t~q~~~t  240 (349)
T KOG2866|consen  161 DENFQDRLALFHGKWKRKGFLVPSTVNVSCGCDFMVGPLSVEKKQRKPKRRRNRKQVKPKEPAKPEQLDDKNITEQESTT  240 (349)
T ss_pred             ccccchhccccccchhhhcccccceeccccccceeecceeEeeccccccccccccccCcCccCCchhhchhhhhhhccch
Confidence            111  11123457999999999999999999999999999999999986322  33457788999999984 44566778


Q ss_pred             HHHHHHHHHHHHhhcC--ccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCCCceeEeeCCCCCccccccCCCcc
Q 015540          231 DKNMTTMFEILRRKKS--VRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKY  308 (405)
Q Consensus       231 ~~~v~~i~~~L~k~~~--v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~dG~p~I~p~~~p~~~~~~s~~~~~  308 (405)
                      .+++..|+++|++.++  |+||+|||||+||+||||||||||||||||+|.|..|++|+|++.+        ..+++..+
T Consensus       241 ~~~~~i~~~ll~k~~~e~i~yfkfI~nP~SFsrTVENlFylSFLikdg~~~i~~d~~g~~~~~~--------~~s~~~~~  312 (349)
T KOG2866|consen  241 EENKQIMLQLLKKEGPEPINYFKFIINPNSFSRTVENLFYLSFLIKDGKAEIENDENGLPEVNS--------KMSGGQAY  312 (349)
T ss_pred             hHHHHHHHHHHHhcCCCccchhheeeCcchhHHHHHHHHHHhheecCCeEEEEecCCCcccccc--------eecccccc
Confidence            8888888899999888  9999999999999999999999999999999999999999877754        23567789


Q ss_pred             eeEEEEecHHHHHHHHHHcCCCCCCCCCCCCCC
Q 015540          309 SHFVFRYDFKDWKLMKDVVPAGEELMPHRESSN  341 (405)
Q Consensus       309 ~Q~I~sLd~~~Wk~lie~~~I~EplIphR~~~~  341 (405)
                      +|+|+++||.+|..|.+.|+|.+|||++|.-..
T Consensus       313 ~q~v~~~~y~~~e~mvk~~~i~e~m~~~~~~~~  345 (349)
T KOG2866|consen  313 NQFVERLDYRDWEPMVKHVNISEPMITRRQTIE  345 (349)
T ss_pred             cceeeeechhhHHHHHHHHhccccccCcccccc
Confidence            999999999999999999999999999998664

>PF08743 Nse4_C: Nse4 C-terminal; InterPro: IPR014854 Nse4 is a component of the Smc5/6 DNA repair complex

Probab=100.00  E-value=1.7e-37  Score=257.99  Aligned_cols=93  Identities=38%  Similarity=0.722  Sum_probs=87.0

Q ss_pred             cCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCCCceeEeeCCCCCccccccCCCcceeEEEEecHHHHHHHH
Q 015540          245 KSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAPRNAPSADSVMSGQVKYSHFVFRYDFKDWKLMK  324 (405)
Q Consensus       245 ~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~dG~p~I~p~~~p~~~~~~s~~~~~~Q~I~sLd~~~Wk~li  324 (405)
                      .+|+||+|||||+||+||||||||+|||||||+|+|..|++|+|+|.++.++......+++..++|+|++|||++|+.||
T Consensus         1 ~~i~~~~fvinP~SFsqTVENiF~lSFLVkdG~v~i~~d~~g~p~i~~~~~~~~~~~~~~~~~~~q~I~~ld~~~W~~li   80 (93)
T PF08743_consen    1 EPIDLFEFVINPKSFSQTVENIFYLSFLVKDGRVKIEKDEDGLPVISPCDPPESEEQESDNDSRSQFILSLDYEDWQELI   80 (93)
T ss_pred             CCcchhhheeCcchHHHHHHHHHHHHHHHhcCeEEEEECCCCCeeeccCCccchhhhhccCCCCceEEEEcCHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999966666666667778899999999999999999


Q ss_pred             HHcCCCCCCCCCC
Q 015540          325 DVVPAGEELMPHR  337 (405)
Q Consensus       325 e~~~I~EplIphR  337 (405)
                      ++|+|+|||||||
T Consensus        81 ~~~~i~e~~i~hR   93 (93)
T PF08743_consen   81 EKYNITEPMIPHR   93 (93)
T ss_pred             HHhCCCCcCCCCC
Confidence            9999999999999

It forms interactions with Smc5 and Nse1 [].

>COG5125 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.6e-34  Score=260.52  Aligned_cols=238  Identities=19%  Similarity=0.337  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHHHhHHhhcccCchHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHhhc---cCCCCCHH
Q 015540           60 VLRSKYLAVLSKIQDQRDDLTRVDSKKFNTILKEVQNLHRDVQKPREQVADAEALLDITSTLVTSVKSQ---SNEGVTPT  136 (405)
Q Consensus        60 ~LR~~YR~L~~~i~~~r~dl~~~~s~~l~e~L~ead~Lf~~Vk~prEa~lDAe~L~~la~~l~~s~k~~---~~~g~d~~  136 (405)
                      +|--+|..|.+++.--+.|++.. +-.|.+.+.-.|-+|+..+-+.+.-+||..- .++..+. +.+.-   .-..+++.
T Consensus        15 ~i~~r~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~n~~~~r~~~s~~~~~~a~~~-~~~s~~~-~~r~~~d~~~~~~t~~   91 (259)
T COG5125          15 EVHDRYLNLLQEMRLLKEDLLED-KCRLDKLVSTSNMLFKRIKTSSELKLDAKIT-ALSTKLA-CTRMEKDINLEDITPG   91 (259)
T ss_pred             HHHHHHhhhHHHHHHhhHHHHHH-HHhHHHHhhhhHHHHhhccchhhhhhhhhhh-hhhhccc-cccCccccchhhcCch
Confidence            56677888888888777777654 4458888888999999999888877777653 2222111 11111   11233443


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCCccccCCHHHHHhhhcccccCCCCCccccCCCCccccccccccccccCC-CCcccC
Q 015540          137 DFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGLAVSPFLSACHGCSTMLGPMKTEVKQRKVVVRKKREK-PTQTAQ  215 (405)
Q Consensus       137 dFvskLl~~~g~~~~~~~~~d~dd~~~~~~~W~kLG~~a~~~fr~~P~~~fLlGPL~~E~K~Rk~~qR~r~~k-~~~~~~  215 (405)
                      -.+..+...|-+                     .+.++|.-|.     + .|.|||++++|+|..++|++... +...+.
T Consensus        92 ~~~~~~r~~~l~---------------------~f~~ya~~~s-----i-~m~GPLSf~KK~R~~~~RrR~Q~~~~~~t~  144 (259)
T COG5125          92 TLVELARKDLLH---------------------DFYRYAMDCS-----V-GMRGPLSFSKKHREAPSRRRAQSQRSRQTL  144 (259)
T ss_pred             hHHHHHHHHHHH---------------------HHHHHHHhcc-----c-ceecceeeeeccccchhhHHHhhccccccC
Confidence            333333222211                     1222222111     1 28999999999999888776543 334555


Q ss_pred             Ccccccchhh-hccc--hHHHHHHHHHHHHhhcCccccccccCCcchhHHHHHHHHHhhheecCeEEEEEcCCCceeEee
Q 015540          216 PEEVDDSEAV-EKTD--TDKNMTTMFEILRRKKSVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIAVNEHGFHLVAP  292 (405)
Q Consensus       216 Peel~~~d~~-~k~~--T~~~v~~i~~~L~k~~~v~lf~fVINP~SFsQTVENlFylSFLVKDGrv~I~~D~dG~p~I~p  292 (405)
                      |+........ +++.  +.+++.+|-++|...++|+||+|||||+||+||||||||+|||+|+|++.++.|++|+|+|..
T Consensus       145 p~t~~~~NiT~QE~~~e~~K~~~~iSrlL~~~g~~N~fKFIidP~Sfs~tiENLFY~SFL~KEGKa~le~dE~G~l~i~~  224 (259)
T COG5125         145 PETEVPTNITRQEDSVEEPKILAQISRLLAEKGRTNYFKFIIDPRSFSKTIENLFYLSFLLKEGKAFLEFDEDGTLYVVS  224 (259)
T ss_pred             cceecccccccccCCcchhhHHHHHHHHhcccCCcceeEEecCcchhhHHHHHHHHHHHHHhcChhheeecCCCcEEEEe
Confidence            6655544433 3332  688999999999999999999999999999999999999999999999999999999999965


Q ss_pred             CCCCCccccccCCCcceeEEEEecHHHHHHHHHHcCCCCCCCC
Q 015540          293 RNAPSADSVMSGQVKYSHFVFRYDFKDWKLMKDVVPAGEELMP  335 (405)
Q Consensus       293 ~~~p~~~~~~s~~~~~~Q~I~sLd~~~Wk~lie~~~I~EplIp  335 (405)
                      ...        -..+..|.||.|||++|..+|+.|+|+.|+|.
T Consensus       225 ~~s--------~~~s~~h~i~~m~~~~~~~~i~~~~is~~~~~  259 (259)
T COG5125         225 EGS--------EGASTGHLVVEMTYDEYLRIVERMGISKAMIG  259 (259)
T ss_pred             eee--------eccccccEEEEeccHHHHHHHHHhCCcccccC
Confidence            321        12334599999999999999999999999984

>PF15412 Nse4-Nse3_bdg: Binding domain of Nse4/EID3 to Nse3-MAGE

Probab=97.55  E-value=0.00019  Score=54.52  Aligned_cols=43  Identities=21%  Similarity=0.300  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHhcCCCCC
Q 015540          110 DAEALLDITSTLVTSVKSQS--NEGVTPTDFVSCLLTMFGESNSN  152 (405)
Q Consensus       110 DAe~L~~la~~l~~s~k~~~--~~g~d~~dFvskLl~~~g~~~~~  152 (405)
                      ||++|+.+|.....+++++.  ..+|++++||++|++||+.....
T Consensus         1 DS~~Lv~aSdla~~ka~~lk~~~~~fd~deFv~~l~~fm~~~~~~   45 (56)
T PF15412_consen    1 DSRLLVLASDLAAEKARNLKFGGSGFDVDEFVSKLKTFMGGNRFE   45 (56)
T ss_pred             CcHHHHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHHhCcccCC
Confidence            89999877776666676553  57999999999999999986654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 66/432 (15%), Positives = 136/432 (31%), Gaps = 96/432 (22%)

Query: 12  SSRGRVDDSSEQLLRTVKREKLSRNGADENLDNESTRTNQPQDTVQRRVLRSKY---LAV 68
            +    +   E L + + +   +     ++  N   R +  Q  ++R +    Y   L V
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 69  LSKIQDQRD----DL-------TRVDSKKFNTILKEVQNLHRDVQKPREQVADAEA---L 114
           L  +Q+ +     +L       TR   +  +  L      H  +      +   E    L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR-FKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 115 LDITSTLVTSVKSQSNEGVTPTDFVSCLLTMFGESNSNRLSSQGNNNAQMSINWKDVGL- 173
           L         +  +      P       L++  ES  + L+           NWK V   
Sbjct: 308 LKYLDCRPQDLPREVLTT-NPR-----RLSIIAESIRDGLA--------TWDNWKHVNCD 353

Query: 174 AVSPFLSACHGCSTMLGPMKTEVKQR--KVVVRKKREK-PTQT-----AQPEEVDDSEAV 225
            ++  + +       L P   E ++   ++ V       PT           + D    V
Sbjct: 354 KLTTIIESSLNV---LEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 226 EK--------TDTDKNMTTMFEILRRKK-----SVRLESLILNRRSFAQTVENLFALSFL 272
            K            ++  ++  I    K        L   I++  +  +T ++   L   
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPP 467

Query: 273 VKDGRVEIAVNEH-GFHLVAPRNAPSADSVMSGQVKYSHFVF-----RYDFKDWKLMKDV 326
             D         H G HL   +N    + +   ++ +  F F     R+D   W     +
Sbjct: 468 YLDQY----FYSHIGHHL---KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 327 VPAGEELM----------PHRESS-NALP--VPQAEQASYNNTEGASRTTPIRKLSRNRG 373
           +   ++L           P  E   NA+   +P+ E+         S+ T + ++     
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC-----SKYTDLLRI----A 571

Query: 374 LVIREESVVEDS 385
           L+  +E++ E++
Sbjct: 572 LMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00