Citrus Sinensis ID: 015619

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
ccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHccccccccccc
ccccccccHHHHHHHHHHHHHccccHHHcccEcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccccccccccccccccHHHHHHHHHHHHHccccEEcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEccEcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcEEcHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHccHHHcccccc
MEYGLDPAIGKAIMQAAQEVAegklndhfplvvwqtgsgtqsnmNANEVIANRAAEILghkrgekivhpndhvnrsqssndtfpTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGrthtqdatpltlgqefsgytTQVKYGIDRvicclprmyqlaqggtavgtglntkkgfDVKIASAVaeetslpfvtaENKFEALAAHDAFVETSGALNTVAASLMKIANDvrllgsgprcglgelilpenepgssimpgkvnptqcEALTMVCAQVIGNHVAitvggsnghfelnvfkPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVtslnpkigydNAAAVAKKAHKEGTTLKDAALKLGvlnseefdnlvvpekmigpsd
MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKivhpndhvnrsqssndTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRthtqdatpltlgqefsGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGvlnseefdnlvvpekmigpsd
MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
***********AIMQAAQEVAEGKLNDHFPLVVWQTG***********VIANRAAEIL*************************PTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP************VNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLV**********
MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG***
MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
**YGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG***
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MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q9FI53499 Fumarate hydratase 2, chl yes no 1.0 0.807 0.893 0.0
P93033492 Fumarate hydratase 1, mit yes no 1.0 0.819 0.898 0.0
Q7SX99509 Fumarate hydratase, mitoc yes no 0.992 0.785 0.728 1e-173
Q60HF9510 Fumarate hydratase, mitoc N/A no 0.992 0.784 0.730 1e-172
P07954510 Fumarate hydratase, mitoc yes no 0.992 0.784 0.730 1e-172
P14408507 Fumarate hydratase, mitoc yes no 0.992 0.788 0.725 1e-171
P97807507 Fumarate hydratase, mitoc yes no 0.992 0.788 0.725 1e-171
P10173466 Fumarate hydratase, mitoc yes no 0.992 0.858 0.728 1e-170
O17214501 Probable fumarate hydrata yes no 0.992 0.798 0.703 1e-166
P55250494 Fumarate hydratase, mitoc N/A no 1.0 0.815 0.715 1e-165
>sp|Q9FI53|FUM2_ARATH Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1 Back     alignment and function desciption
 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/403 (89%), Positives = 382/403 (94%)

Query: 1   MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 60
           MEYGLDP IG+AIM+AAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH
Sbjct: 97  MEYGLDPMIGEAIMEAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 156

Query: 61  KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 120
           KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA E  SRLIP+LK LH+SL SKS EFKDI
Sbjct: 157 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAATEITSRLIPSLKNLHSSLESKSFEFKDI 216

Query: 121 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 180
           VKIGRTHTQDATPLTLGQEF GY TQV+YG++RV C LPR+YQLAQGGTAVGTGLNTKKG
Sbjct: 217 VKIGRTHTQDATPLTLGQEFGGYATQVEYGLNRVACTLPRIYQLAQGGTAVGTGLNTKKG 276

Query: 181 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 240
           FDVKIA+AVAEET+LPFVTAENKFEALAAHDA VETSG+LNT+A SLMKIAND+R LGSG
Sbjct: 277 FDVKIAAAVAEETNLPFVTAENKFEALAAHDACVETSGSLNTIATSLMKIANDIRFLGSG 336

Query: 241 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 300
           PRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GNHVA+T+GGSNGHFELNVF
Sbjct: 337 PRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTIGGSNGHFELNVF 396

Query: 301 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 360
           KP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNA
Sbjct: 397 KPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNA 456

Query: 361 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
           AAVAK+AHKEG TLK AA+KLGVL SEEFD LVVPEKMIGPSD
Sbjct: 457 AAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGPSD 499

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|P93033|FUM1_ARATH Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2 Back     alignment and function description
>sp|Q7SX99|FUMH_DANRE Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1 Back     alignment and function description
>sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1 Back     alignment and function description
>sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3 Back     alignment and function description
>sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1 Back     alignment and function description
>sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=3 Back     alignment and function description
>sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1 Back     alignment and function description
>sp|O17214|FUMH_CAEEL Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1 Back     alignment and function description
>sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
224068388490 predicted protein [Populus trichocarpa] 1.0 0.822 0.935 0.0
356500262495 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.814 0.925 0.0
356500272465 PREDICTED: fumarate hydratase 2, chlorop 1.0 0.866 0.923 0.0
356534969495 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.814 0.915 0.0
449469056495 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.814 0.920 0.0
15241331499 fumarate hydratase 2 [Arabidopsis thalia 1.0 0.807 0.893 0.0
186531130423 fumarate hydratase 2 [Arabidopsis thalia 1.0 0.952 0.893 0.0
225437455494 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.815 0.915 0.0
297824853492 hypothetical protein ARALYDRAFT_483931 [ 1.0 0.819 0.903 0.0
15226618492 fumarate hydratase, class II [Arabidopsi 1.0 0.819 0.898 0.0
>gi|224068388|ref|XP_002302734.1| predicted protein [Populus trichocarpa] gi|222844460|gb|EEE82007.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/403 (93%), Positives = 390/403 (96%)

Query: 1   MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 60
           M+YGLDP+IGKAIMQAA EVAEGKL+DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH
Sbjct: 88  MQYGLDPSIGKAIMQAAHEVAEGKLSDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 147

Query: 61  KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 120
           KRGEK VHPNDHVNRSQSSNDTFPTVMHIAAA E NSRLIP LK LH +LHSKSVEFKDI
Sbjct: 148 KRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPKLKTLHLTLHSKSVEFKDI 207

Query: 121 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 180
           VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRV+C LP MYQLAQGGTAVGTGLNTKKG
Sbjct: 208 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVMCTLPHMYQLAQGGTAVGTGLNTKKG 267

Query: 181 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 240
           FDVKIASAVAEET+LPFVTAENKFEALAAHDAFVETSGALNTVA SLMKIAND+RLLGSG
Sbjct: 268 FDVKIASAVAEETNLPFVTAENKFEALAAHDAFVETSGALNTVATSLMKIANDIRLLGSG 327

Query: 241 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 300
           PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV+GNHVAITVGGSNGHFELNVF
Sbjct: 328 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVF 387

Query: 301 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 360
           KPMIASGLLHS+RLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA
Sbjct: 388 KPMIASGLLHSIRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 447

Query: 361 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
           AAVAK AHKEG+TLK+AALKLG+L SEEFD LVVPEKMIGP+D
Sbjct: 448 AAVAKLAHKEGSTLKEAALKLGMLTSEEFDTLVVPEKMIGPTD 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356500262|ref|XP_003518952.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356500272|ref|XP_003518957.1| PREDICTED: fumarate hydratase 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356534969|ref|XP_003536023.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|449469056|ref|XP_004152237.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Cucumis sativus] gi|449484240|ref|XP_004156827.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15241331|ref|NP_199908.1| fumarate hydratase 2 [Arabidopsis thaliana] gi|39931631|sp|Q9FI53.1|FUM2_ARATH RecName: Full=Fumarate hydratase 2, chloroplastic; Short=Fumarase 2; Flags: Precursor gi|9758242|dbj|BAB08741.1| fumarate hydratase [Arabidopsis thaliana] gi|15529147|gb|AAK97668.1| AT5g50950/K3K7_11 [Arabidopsis thaliana] gi|21360525|gb|AAM47378.1| AT5g50950/K3K7_11 [Arabidopsis thaliana] gi|332008632|gb|AED96015.1| fumarate hydratase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186531130|ref|NP_001119412.1| fumarate hydratase 2 [Arabidopsis thaliana] gi|332008633|gb|AED96016.1| fumarate hydratase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225437455|ref|XP_002273033.1| PREDICTED: fumarate hydratase 1, mitochondrial [Vitis vinifera] gi|297743928|emb|CBI36898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297824853|ref|XP_002880309.1| hypothetical protein ARALYDRAFT_483931 [Arabidopsis lyrata subsp. lyrata] gi|297326148|gb|EFH56568.1| hypothetical protein ARALYDRAFT_483931 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15226618|ref|NP_182273.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|145331433|ref|NP_001078075.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|39931311|sp|P93033.2|FUM1_ARATH RecName: Full=Fumarate hydratase 1, mitochondrial; Short=Fumarase 1; Flags: Precursor gi|2443751|gb|AAB71399.1| fumarase [Arabidopsis thaliana] gi|2529676|gb|AAC62859.1| putative fumarase [Arabidopsis thaliana] gi|15809968|gb|AAL06911.1| At2g47510/T30B22.19 [Arabidopsis thaliana] gi|17064768|gb|AAL32538.1| putative fumarase [Arabidopsis thaliana] gi|28059023|gb|AAO29979.1| putative fumarase [Arabidopsis thaliana] gi|330255758|gb|AEC10852.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|330255759|gb|AEC10853.1| fumarate hydratase, class II [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2061966492 FUM1 "fumarase 1" [Arabidopsis 1.0 0.819 0.898 5.7e-194
UNIPROTKB|Q5ZLD1507 FH "Uncharacterized protein" [ 0.992 0.788 0.745 2.3e-158
UNIPROTKB|P07954510 FH "Fumarate hydratase, mitoch 0.992 0.784 0.730 1.4e-156
UNIPROTKB|Q5M964507 Fh "Protein Fh1" [Rattus norve 0.992 0.788 0.725 3.8e-156
UNIPROTKB|Q148D3510 FH "Fumarate hydratase" [Bos t 0.992 0.784 0.733 6.3e-156
RGD|2614507 Fh "fumarate hydratase" [Rattu 0.992 0.788 0.725 8e-156
MGI|MGI:95530507 Fh1 "fumarate hydratase 1" [Mu 0.992 0.788 0.725 2.7e-155
UNIPROTKB|E2RGR9508 FH "Uncharacterized protein" [ 0.992 0.787 0.728 3.5e-155
UNIPROTKB|P10173466 FH "Fumarate hydratase, mitoch 0.992 0.858 0.728 5.6e-155
ZFIN|ZDB-GENE-010724-6509 fh "fumarate hydratase" [Danio 0.992 0.785 0.728 1.9e-154
TAIR|locus:2061966 FUM1 "fumarase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1879 (666.5 bits), Expect = 5.7e-194, P = 5.7e-194
 Identities = 362/403 (89%), Positives = 382/403 (94%)

Query:     1 MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 60
             MEYGLDP IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 
Sbjct:    90 MEYGLDPTIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGR 149

Query:    61 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 120
             KRGEK VHPNDHVNRSQSSNDTFPTVMHIAAA E NSRLIP+LK LH++L SKS EFKDI
Sbjct:   150 KRGEKCVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKTLHSTLESKSFEFKDI 209

Query:   121 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 180
             VKIGRTHTQDATPLTLGQEF GY TQVKYG++RV C LPR+YQLAQGGTAVGTGLNTKKG
Sbjct:   210 VKIGRTHTQDATPLTLGQEFGGYATQVKYGLNRVTCTLPRLYQLAQGGTAVGTGLNTKKG 269

Query:   181 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 240
             FDVKIA+AVAEET+LPFVTAENKFEALAAHDA VETSG+LNT+A SLMKIAND+R LGSG
Sbjct:   270 FDVKIAAAVAEETNLPFVTAENKFEALAAHDACVETSGSLNTIATSLMKIANDIRFLGSG 329

Query:   241 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 300
             PRCGLGEL+LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GNHVA+TVGGSNGHFELNVF
Sbjct:   330 PRCGLGELVLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGSNGHFELNVF 389

Query:   301 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 360
             KP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNA
Sbjct:   390 KPVIASALLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNA 449

Query:   361 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
             AAVAKKAHKEG TLK+AAL LGVL +EEFD LVVPEKMIGPSD
Sbjct:   450 AAVAKKAHKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGPSD 492
GO:0003824 "catalytic activity" evidence=IEA
GO:0004333 "fumarate hydratase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0006106 "fumarate metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=IEA
GO:0045239 "tricarboxylic acid cycle enzyme complex" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0048868 "pollen tube development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|Q5ZLD1 FH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P07954 FH "Fumarate hydratase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M964 Fh "Protein Fh1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q148D3 FH "Fumarate hydratase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|2614 Fh "fumarate hydratase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:95530 Fh1 "fumarate hydratase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGR9 FH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P10173 FH "Fumarate hydratase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010724-6 fh "fumarate hydratase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JTR0FUMC_NEIMA4, ., 2, ., 1, ., 20.60800.98510.8593yesno
O25883FUMC_HELPY4, ., 2, ., 1, ., 20.58920.97020.8444yesno
Q9ZCQ4FUMC_RICPR4, ., 2, ., 1, ., 20.6450.98750.8633yesno
Q8UEY7FUMC_AGRT54, ., 2, ., 1, ., 20.64160.98750.8596yesno
Q92PB6FUMC_RHIME4, ., 2, ., 1, ., 20.64910.98750.8596yesno
Q8FX90FUMC_BRUSU4, ., 2, ., 1, ., 20.64070.98510.8574yesno
Q8F9L0FUMC_LEPIN4, ., 2, ., 1, ., 20.65900.97270.8448yesno
P28894FUMC1_BRAJA4, ., 2, ., 1, ., 20.66330.98510.8393yesno
O17214FUMH_CAEEL4, ., 2, ., 1, ., 20.70320.99250.7984yesno
Q9FI53FUM2_ARATH4, ., 2, ., 1, ., 20.89331.00.8076yesno
Q7W4N9FUMC_BORPA4, ., 2, ., 1, ., 20.62780.97760.8509yesno
P08417FUMH_YEAST4, ., 2, ., 1, ., 20.70600.98750.8155yesno
P05042FUMC_ECOLI4, ., 2, ., 1, ., 20.63580.96520.8329N/Ano
Q72VY3FUMC_LEPIC4, ., 2, ., 1, ., 20.65900.97270.8448yesno
Q8Z6R6FUMC_SALTI4, ., 2, ., 1, ., 20.62300.96520.8329N/Ano
Q8ZEB6FUMC_YERPE4, ., 2, ., 1, ., 20.60440.99250.8602yesno
Q4UMT4FUMC_RICFE4, ., 2, ., 1, ., 20.64830.99000.8655yesno
Q92GW0FUMC_RICCN4, ., 2, ., 1, ., 20.63520.99500.8660yesno
P71384FUMC_HAEIN4, ., 2, ., 1, ., 20.61180.96270.8362yesno
Q983U5FUMC_RHILO4, ., 2, ., 1, ., 20.64820.98510.8537yesno
P93033FUM1_ARATH4, ., 2, ., 1, ., 20.89821.00.8191yesno
Q9ZJQ9FUMC_HELPJ4, ., 2, ., 1, ., 20.57900.97020.8444yesno
Q8ZPL7FUMC_SALTY4, ., 2, ., 1, ., 20.62820.96520.8329yesno
P97807FUMH_MOUSE4, ., 2, ., 1, ., 20.72560.99250.7889yesno
Q8XQE8FUMC_RALSO4, ., 2, ., 1, ., 20.61400.98510.8611yesno
Q1RHL6FUMC_RICBR4, ., 2, ., 1, ., 20.63610.99750.8682yesno
Q8KTE1FUMC_METEA4, ., 2, ., 1, ., 20.66250.99000.8453yesno
Q83CL8FUMC_COXBU4, ., 2, ., 1, ., 20.62460.96270.8453yesno
Q55674FUMC_SYNY34, ., 2, ., 1, ., 20.60510.96520.8347N/Ano
Q83ML8FUMC_SHIFL4, ., 2, ., 1, ., 20.63580.96520.8329yesno
P07954FUMH_HUMAN4, ., 2, ., 1, ., 20.73060.99250.7843yesno
Q7W0A2FUMC_BORPE4, ., 2, ., 1, ., 20.62780.97760.8509yesno
Q8FHA7FUMC_ECOL64, ., 2, ., 1, ., 20.63580.96520.8329yesno
P55250FUMH_RHIOR4, ., 2, ., 1, ., 20.71531.00.8157N/Ano
Q8YB50FUMC_BRUME4, ., 2, ., 1, ., 20.64070.98510.8574yesno
P10173FUMH_PIG4, ., 2, ., 1, ., 20.72810.99250.8583yesno
Q8X769FUMC_ECO574, ., 2, ., 1, ., 20.63580.96520.8329N/Ano
Q7VKC9FUMC_HAEDU4, ., 2, ., 1, ., 20.60920.96270.8362yesno
Q7SX99FUMH_DANRE4, ., 2, ., 1, ., 20.72810.99250.7858yesno
O94552FUMH_SCHPO4, ., 2, ., 1, ., 20.68170.98750.7653yesno
Q7N4H8FUMC_PHOLL4, ., 2, ., 1, ., 20.61440.99250.8620yesno
Q68W74FUMC_RICTY4, ., 2, ., 1, ., 20.63750.98750.8633yesno
Q9A6I5FUMC_CAUCR4, ., 2, ., 1, ., 20.66330.98510.8574yesno
Q7WG65FUMC_BORBR4, ., 2, ., 1, ., 20.62780.97760.8509yesno
Q54VA2FUMH_DICDI4, ., 2, ., 1, ., 20.71320.99000.8226yesno
Q60HF9FUMH_MACFA4, ., 2, ., 1, ., 20.73060.99250.7843N/Ano
P14408FUMH_RAT4, ., 2, ., 1, ., 20.72560.99250.7889yesno
Q9CMK1FUMC_PASMU4, ., 2, ., 1, ., 20.62460.96270.8362yesno
P95331FUMC_MYXXD4, ., 2, ., 1, ., 20.59690.97020.8390yesno
Q82SM5FUMC_NITEU4, ., 2, ., 1, ., 20.61510.97760.8528yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.983
4th Layer4.2.1.20.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00021795
aspartate ammonia-lyase (EC-4.2.1.2) (490 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_I2224
succinate dehydrogenase (EC-1.3.5.1) (285 aa)
•  • •• 0.994
gw1.VII.3485.1
succinate dehydrogenase (EC-1.3.5.1) (633 aa)
•  • •• 0.958
eugene3.00570187
succinate dehydrogenase (EC-1.3.5.1) (638 aa)
•  • •• 0.957
estExt_Genewise1_v1.C_LG_I4975
malate dehydrogenase (EC-1.1.1.37) (340 aa)
     •• 0.927
estExt_fgenesh4_pg.C_LG_XI0680
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (341 aa)
     •• 0.927
estExt_fgenesh4_pg.C_LG_VII1232
malate dehydrogenase (EC-1.1.1.37) (355 aa)
     •• 0.924
eugene3.00021309
malate dehydrogenase (EC-1.1.1.37) (332 aa)
     •• 0.923
estExt_Genewise1_v1.C_2730019
malate dehydrogenase (EC-1.1.1.37) (332 aa)
     •• 0.923
eugene3.00081537
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
     •• 0.923
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
     •• 0.921

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
PLN00134458 PLN00134, PLN00134, fumarate hydratase; Provisiona 0.0
PRK00485464 PRK00485, fumC, fumarate hydratase; Reviewed 0.0
cd01362455 cd01362, Fumarase_classII, Class II fumarases 0.0
cd01596450 cd01596, Aspartase_like, aspartase (L-aspartate am 0.0
COG0114462 COG0114, FumC, Fumarase [Energy production and con 0.0
TIGR00979458 TIGR00979, fumC_II, fumarate hydratase, class II 0.0
PRK12273472 PRK12273, aspA, aspartate ammonia-lyase; Provision 1e-180
PRK12425464 PRK12425, PRK12425, fumarate hydratase; Provisiona 1e-176
cd01357450 cd01357, Aspartase, Aspartase 1e-175
PRK13353473 PRK13353, PRK13353, aspartate ammonia-lyase; Provi 1e-165
COG1027471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 1e-159
TIGR00839468 TIGR00839, aspA, aspartate ammonia-lyase 1e-133
pfam00206312 pfam00206, Lyase_1, Lyase 1e-112
PRK14515479 PRK14515, PRK14515, aspartate ammonia-lyase; Provi 1e-112
cd01334325 cd01334, Lyase_I, Lyase class I family; a group of 1e-111
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 1e-58
pfam1041555 pfam10415, FumaraseC_C, Fumarase C C-terminus 1e-25
cd01595381 cd01595, Adenylsuccinate_lyase_like, Adenylsuccina 9e-23
COG0015438 COG0015, PurB, Adenylosuccinate lyase [Nucleotide 9e-20
cd01597437 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco 6e-19
TIGR00928435 TIGR00928, purB, adenylosuccinate lyase 9e-17
PRK08540449 PRK08540, PRK08540, adenylosuccinate lyase; Review 3e-16
cd01360387 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate 4e-15
PRK06390451 PRK06390, PRK06390, adenylosuccinate lyase; Provis 4e-13
PRK09053452 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc 6e-12
TIGR00838455 TIGR00838, argH, argininosuccinate lyase 1e-11
TIGR02426338 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona 1e-09
COG0165459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 1e-08
cd01359435 cd01359, Argininosuccinate_lyase, Argininosuccinat 6e-08
PLN02646474 PLN02646, PLN02646, argininosuccinate lyase 1e-07
cd01598425 cd01598, PurB, PurB_like adenylosuccinases (adenyl 1e-07
cd03302436 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate 7e-07
PRK07380431 PRK07380, PRK07380, adenylosuccinate lyase; Provis 8e-07
PRK08937216 PRK08937, PRK08937, adenylosuccinate lyase; Provis 2e-06
PRK07492435 PRK07492, PRK07492, adenylosuccinate lyase; Provis 4e-06
PRK06705502 PRK06705, PRK06705, argininosuccinate lyase; Provi 2e-05
PRK09285456 PRK09285, PRK09285, adenylosuccinate lyase; Provis 3e-04
PRK12308 614 PRK12308, PRK12308, bifunctional argininosuccinate 0.001
PLN02848458 PLN02848, PLN02848, adenylosuccinate lyase 0.002
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional Back     alignment and domain information 
 Score =  798 bits (2063), Expect = 0.0
 Identities = 353/405 (87%), Positives = 370/405 (91%), Gaps = 2/405 (0%)

Query: 1   MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
           MEYG LDP IGKAIMQAA EVAEGKL+DHFPLVVWQTGSGTQ+NMNANEVIANRAAEILG
Sbjct: 52  MEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILG 111

Query: 60  HKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
              GEK  VHPNDHVNRSQSSNDTFPT MHIAAA E +SRLIP LK LH SL +KS EFK
Sbjct: 112 GPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFK 171

Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
           DIVKIGRTH QDA PLTLGQEFSGY TQVKYG++RV C LPR+Y+LAQGGTAVGTGLNTK
Sbjct: 172 DIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTK 231

Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
           KGFD KIA+AVAEET LPFVTA NKFEALAAHDAFVE SGALNTVA SLMKIAND+RLLG
Sbjct: 232 KGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLG 291

Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
           SGPRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GNHVAITVGGS GHFELN
Sbjct: 292 SGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELN 351

Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
           VFKP+IA  LLHS+RLLGDASASF KNCVRGI+ANRERISKLLHESLMLVT+LNPKIGYD
Sbjct: 352 VFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYD 411

Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
            AAAVAKKAHKEGTTLK+AALKLGVL +EEFD LVVPEKM GPSD
Sbjct: 412 KAAAVAKKAHKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGPSD 456

Length = 458
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed Back     alignment and domain information
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases Back     alignment and domain information
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II Back     alignment and domain information
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|176462 cd01357, Aspartase, Aspartase Back     alignment and domain information
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus Back     alignment and domain information
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase Back     alignment and domain information
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
PRK12425464 fumarate hydratase; Provisional 100.0
PLN00134458 fumarate hydratase; Provisional 100.0
PRK00485464 fumC fumarate hydratase; Reviewed 100.0
PRK14515479 aspartate ammonia-lyase; Provisional 100.0
TIGR00979458 fumC_II fumarate hydratase, class II. Putative fum 100.0
PRK13353473 aspartate ammonia-lyase; Provisional 100.0
PRK12273472 aspA aspartate ammonia-lyase; Provisional 100.0
COG0114462 FumC Fumarase [Energy production and conversion] 100.0
cd01357450 Aspartase Aspartase. This subgroup contains Escher 100.0
TIGR00839468 aspA aspartate ammonia-lyase. Fumarate hydratase s 100.0
cd01362455 Fumarase_classII Class II fumarases. This subgroup 100.0
COG1027471 AspA Aspartate ammonia-lyase [Amino acid transport 100.0
cd01596450 Aspartase_like aspartase (L-aspartate ammonia-lyas 100.0
COG0165459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
PLN02646474 argininosuccinate lyase 100.0
TIGR00838455 argH argininosuccinate lyase. This model describes 100.0
PRK09053452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
KOG1317487 consensus Fumarase [Energy production and conversi 100.0
PRK00855459 argininosuccinate lyase; Provisional 100.0
PRK06705502 argininosuccinate lyase; Provisional 100.0
cd01597437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 100.0
PRK04833455 argininosuccinate lyase; Provisional 100.0
cd01359435 Argininosuccinate_lyase Argininosuccinate lyase (a 100.0
KOG1316464 consensus Argininosuccinate lyase [Amino acid tran 100.0
PRK07492435 adenylosuccinate lyase; Provisional 100.0
TIGR00928435 purB adenylosuccinate lyase. This family consists 100.0
PRK08470442 adenylosuccinate lyase; Provisional 100.0
PRK08540449 adenylosuccinate lyase; Reviewed 100.0
PRK07380431 adenylosuccinate lyase; Provisional 100.0
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 100.0
PRK06390451 adenylosuccinate lyase; Provisional 100.0
COG0015438 PurB Adenylosuccinate lyase [Nucleotide transport 100.0
cd01595381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 100.0
cd03302436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 100.0
PRK02186887 argininosuccinate lyase; Provisional 100.0
cd01360387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 100.0
PRK06389434 argininosuccinate lyase; Provisional 100.0
cd01334325 Lyase_I Lyase class I family; a group of proteins 100.0
TIGR02426338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 100.0
PRK05975351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
PRK09285456 adenylosuccinate lyase; Provisional 100.0
cd01598425 PurB PurB_like adenylosuccinases (adenylsuccinate 100.0
PLN02848458 adenylosuccinate lyase 100.0
PF00206312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 100.0
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 100.0
PRK08937216 adenylosuccinate lyase; Provisional 99.97
PF1041555 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR0 98.79
PF1039781 ADSL_C: Adenylosuccinate lyase C-terminus; InterPr 97.99
PF1469870 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1 97.05
PF08328115 ASL_C: Adenylosuccinate lyase C-terminal; InterPro 95.17
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 92.07
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.6e-96  Score=745.41  Aligned_cols=402  Identities=57%  Similarity=0.895  Sum_probs=386.7

Q ss_pred             CCCC-CCHHHHHHHHHHHHHHHccccCCCCccccccCCCccccccchhHHHHHHHHHHhCCcCCCc-ccccccccCCCCC
Q 015619            1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQS   78 (403)
Q Consensus         1 ~~~G-i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~vie~~l~~~~g~~~g~~-~~h~~~~vh~g~S   78 (403)
                      .+.| ||++++++|.++|++|.++...++|++|++|.+++||+||||||||++++.+++|.++|++ .+||++|||+|||
T Consensus        58 ~~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~~~e~~G~~~g~~~~vhpn~~vh~g~S  137 (464)
T PRK12425         58 DRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQS  137 (464)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHcCcccCCCCccCCCCCCcchHHHHHHHHHHHHHHHHhCcccccccccCchhcccCCCC
Confidence            3689 9999999999999999998888999999999999999999999999999999999878854 3999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCccCchhHHHHHHHHHHHHHHHHHHhhh
Q 015619           79 SNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL  158 (403)
Q Consensus        79 ~nD~~~Ta~~l~~~~~l~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~  158 (403)
                      |||+++|+++|++|+.+...+.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.+++
T Consensus       138 ~ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~~tim~GrTHlQ~A~PiT~G~~~~a~~~~l~rd~~RL~~~~  217 (464)
T PRK12425        138 SNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAAL  217 (464)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccccccCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999328999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCcccccCCCCCCCchhHHHHHHHHHHcCCCCCCCCchhhHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015619          159 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG  238 (403)
Q Consensus       159 ~~~~~~~lGg~a~Gt~~~~~~~~~~~~~~~la~~LG~~~~~~~n~~da~~~rd~~~~~~~~l~~~~~~l~kia~Dl~~~~  238 (403)
                      ++++.+|+||||+||++++++.|++++.+.+++.|||+.++.+|++|++++||+++++++++++++++|+|||+||++|+
T Consensus       218 ~r~~~~plGggAvGT~~~~~~~~~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~lls  297 (464)
T PRK12425        218 PAVCELAQGGTAVGTGLNAPHGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLG  297 (464)
T ss_pred             HHHHHhcCCCchhcCcccCCccHHHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999989999999999999999877899999999999999999999999999999999999999


Q ss_pred             cCCCCcceeEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhccCccccccchhhHHHHhHHHHHHHHHHH
Q 015619          239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDA  318 (403)
Q Consensus       239 s~~~~e~gev~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  318 (403)
                      |+|++|||||++|+.++|||||||||||+.+|.++++|++++|++.+++....+++++.+.+++.+.+.++++++.+.++
T Consensus       298 S~p~~g~~ei~lp~~~~GSSiMPqK~NP~~~E~i~~~a~~v~G~~~~v~~~~~~~~~q~n~~~~~~~~~~l~s~~~l~~~  377 (464)
T PRK12425        298 SGPRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPVIIHNLLQSIRLLADG  377 (464)
T ss_pred             cCccCCceEEECCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhcchHHHHHHHHHHHHHHHH
Confidence            99999999999998899999999999999999999999999999999988888899999888888888999999999999


Q ss_pred             HHHHHHhhhhcCccCHHHHHHHhhhhhhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHhhcCCcccc
Q 015619          319 SASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM  398 (403)
Q Consensus       319 ~~~~~~~~l~~l~v~~erm~~~l~~~~~~~~~la~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~~l~~~ldp~~~  398 (403)
                      ++.+...|+++|+||++||++|++.+++++|+|++.+||++||++++++.++|++++|++.+.+.++++++++++||.+|
T Consensus       378 ~~~~~~~~i~~l~vn~erm~~~l~~~~~~at~L~~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldP~~~  457 (464)
T PRK12425        378 CRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLREAALALGYLTDEQFDAWVRPENM  457 (464)
T ss_pred             HHHHHHHHHccCEECHHHHHHHHHcccHHHHHhhhccCHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHHcCHHHh
Confidence            99998899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 015619          399 IGPS  402 (403)
Q Consensus       399 vg~~  402 (403)
                      +++.
T Consensus       458 ~~~~  461 (464)
T PRK12425        458 LEAG  461 (464)
T ss_pred             cCCC
Confidence            9875

>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>KOG1317 consensus Fumarase [Energy production and conversion] Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK08937 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle Back     alignment and domain information
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) [] Back     alignment and domain information
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B Back     alignment and domain information
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli) Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3e04_A490 Crystal Structure Of Human Fumarate Hydratase Lengt 1e-173
1yfm_A488 Recombinant Yeast Fumarase Length = 488 1e-161
3gtd_A482 2.4 Angstrom Crystal Structure Of Fumarate Hydratas 1e-149
3tv2_A459 Structure Of A Class Ii Fumarate Hydratase From Bur 1e-145
4hgv_A495 Crystal Structure Of A Fumarate Hydratase Length = 1e-145
1fuo_A467 Fumarase C With Bound Citrate Length = 467 1e-139
1fup_A472 Fumarase With Bound Pyromellitic Acid Length = 472 1e-139
1kq7_A467 E315q Mutant Form Of Fumarase C From E.Coli Length 1e-139
1fur_A467 Fumarase Mutant H188n With Bound Substrate L-Malate 1e-138
2fus_A467 Mutations Of Fumarase That Distinguish Between The 1e-138
1vdk_A466 Crystal Structure Of Fumarase From Thermus Thermoph 1e-127
3qbp_A478 Crystal Structure Of Fumarase Fum From Mycobacteriu 1e-107
4adl_A495 Crystal Structures Of Rv1098c In Complex With Malat 1e-106
3no9_A475 Crystal Structure Of Apo Fumarate Hydratase From My 1e-106
4apa_A474 Crystal Structure Of Mycobacterium Tuberculosis Fum 1e-105
4apb_A474 Crystal Structure Of Mycobacterium Tuberculosis Fum 1e-105
3rd8_A489 Crystal Structure Of Fumarate Hydratase Class Ii My 1e-104
3rrp_A471 Crystal Structure Of Fumarate Hydratase Fum From My 8e-99
1j3u_A468 Crystal Structure Of Aspartase From Bacillus Sp. Ym 3e-93
3oce_A474 Crystal Structure Of Fumarate Lyase:delta Crystalli 2e-81
3ocf_A478 Crystal Structure Of Fumarate Lyase:delta Crystalli 2e-81
1jsw_A478 Native L-Aspartate Ammonia Lyase Length = 478 5e-79
3r6y_A401 Crystal Structure Of Chymotrypsin-Treated Aspartase 6e-79
3c8t_A451 Crystal Structure Of Fumarate Lyase From Mesorhizob 5e-10
1re5_A450 Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lac 7e-09
4eei_A438 Crystal Structure Of Adenylosuccinate Lyase From Fr 2e-08
2e9f_A462 Crystal Structure Of T.th.hb8 Argininosuccinate Lya 7e-07
1q5n_A454 Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate 1e-06
2qga_B465 Plasmodium Vivax Adenylosuccinate Lyase Pv003765 Wi 1e-06
1f1o_A431 Structural Studies Of Adenylosuccinate Lyases Lengt 7e-06
2hvg_A482 Crystal Structure Of Adenylosuccinate Lyase From Pl 1e-05
1c3u_A431 T. Maritima Adenylosuccinate Lyase Length = 431 1e-05
1c3c_A429 T. Maritima Adenylosuccinate Lyase Length = 429 1e-05
1dof_A403 The Crystal Structure Of Adenylosuccinate Lyase Fro 4e-05
3gzh_A482 Crystal Structure Of Phosphate-Bound Adenylosuccina 2e-04
1tj7_A457 Structure Determination And Refinement At 2.44 A Re 4e-04
2pfm_A444 Crystal Structure Of Adenylosuccinate Lyase (Purb) 7e-04
4efc_A472 Crystal Structure Of Adenylosuccinate Lyase From Tr 8e-04
2x75_A431 Staphylococcus Aureus Adenylosuccinate Lyase Length 8e-04
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase Length = 490 Back     alignment and structure 
Iteration: 1

 Score =  605 bits (1560), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/401 (73%), Positives = 337/401 (84%), Gaps = 1/401 (0%)
Query: 2   EYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 61
           +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG +
Sbjct: 89  DYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGE 148
Query: 62  RGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 120
            G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L+P L+ LH++L +KS EF  I
Sbjct: 149 LGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQI 208
Query: 121 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 180
           +KIGRTHTQDA PLTLGQEFSGY  QVKY + R+   +PR+Y+LA GGTAVGTGLNT+ G
Sbjct: 209 IKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIG 268
Query: 181 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 240
           F  K+A+ VA  T LPFVTA NKFEALAAHDA VE SGA+NT A SLMKIAND+R LGSG
Sbjct: 269 FAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSG 328
Query: 241 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 300
           PR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV+GNHVA+TVGGSNGHFELNVF
Sbjct: 329 PRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVF 388
Query: 301 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 360
           KPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD A
Sbjct: 389 KPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKA 448
Query: 361 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
           A +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct: 449 AKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 489
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase Length = 488 Back     alignment and structure
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From Rickettsia Prowazekii Length = 482 Back     alignment and structure
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From Burkholderia Pseudomallei Length = 459 Back     alignment and structure
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase Length = 495 Back     alignment and structure
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate Length = 467 Back     alignment and structure
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid Length = 472 Back     alignment and structure
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli Length = 467 Back     alignment and structure
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At Putative Activator Site Length = 467 Back     alignment and structure
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active Site And A Nearby Dicarboxylic Acid Binding Site Length = 467 Back     alignment and structure
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus Hb8 Length = 466 Back     alignment and structure
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium Marinum Length = 478 Back     alignment and structure
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate Length = 495 Back     alignment and structure
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From Mycobacterium Tuberculosis Length = 475 Back     alignment and structure
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (Rv1098c) S318a In Apo Form Length = 474 Back     alignment and structure
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase ( Rv1098c) S318c In Complex With Fumarate Length = 474 Back     alignment and structure
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii Mycobacterium Smegmatis Length = 489 Back     alignment and structure
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From Mycobacterium Abscessus With Malate Bound Length = 471 Back     alignment and structure
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1 Length = 468 Back     alignment and structure
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis Bound To Cobalt Length = 474 Back     alignment and structure
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis In Native Form Length = 478 Back     alignment and structure
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase Length = 478 Back     alignment and structure
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From Bacillus Sp. Ym55-1 Length = 401 Back     alignment and structure
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451 Back     alignment and structure
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 450 Back     alignment and structure
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Francisella Tularensis Complexed With Amp And Succinate Length = 438 Back     alignment and structure
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462 Back     alignment and structure
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus Sp. Adp1 Length = 454 Back     alignment and structure
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp Bound Length = 465 Back     alignment and structure
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases Length = 431 Back     alignment and structure
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Plasmodium Vivax Length = 482 Back     alignment and structure
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429 Back     alignment and structure
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From Pyrobaculum Aerophilum: Insights Into Thermal Stability And Human Pathology Length = 403 Back     alignment and structure
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate Lyase From E. Coli Length = 482 Back     alignment and structure
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457 Back     alignment and structure
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444 Back     alignment and structure
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Trypanosoma Brucei, Tb427tmp.160.5560 Length = 472 Back     alignment and structure
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase Length = 431 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 0.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 0.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 0.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 0.0
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 0.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 0.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 0.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 0.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 0.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 9e-28
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 4e-27
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 5e-27
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 3e-23
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 3e-22
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 2e-20
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 7e-19
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 1e-18
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 3e-14
1yis_A478 Adenylosuccinate lyase; structural genomics, PSI, 3e-14
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 3e-14
2j91_A503 Adenylosuccinate lyase; disease mutation, adenylos 4e-14
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 Back     alignment and structure
 Score =  818 bits (2116), Expect = 0.0
 Identities = 226/404 (55%), Positives = 280/404 (69%), Gaps = 1/404 (0%)

Query: 1   MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
           +E G L   I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG
Sbjct: 61  LELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILG 120

Query: 60  HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
              G K  HPNDHVNR QSSNDTFPT M++A A+  + RL P ++ L  +  +K+  F  
Sbjct: 121 KPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQ 180

Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
           IVK+GRTH  DA P+TLGQE   +  Q+K  +  V      +Y LA GGTAVGTGLN   
Sbjct: 181 IVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHP 240

Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
            F   +A  +AEET LPF  AEN+F ALAAHD  V   GA+ T+A +LMKI NDVR L S
Sbjct: 241 RFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLAS 300

Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
           GP  G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV  +V GN   +   GS G+F+LNV
Sbjct: 301 GPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNV 360

Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
           +KP++A   L S+ LL DA ASF+ +  +GI+ N ERI + L ++ ML T+LN  IGYD 
Sbjct: 361 YKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDK 420

Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
           AA + KKA KE  TLK AAL+LG L  EEFD +VVP ++  P +
Sbjct: 421 AAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPHE 464
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438 Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459 Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462 Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 100.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
4hgv_A495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 100.0
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 100.0
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 100.0
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 100.0
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 100.0
2e9f_A462 Argininosuccinate lyase; alpha helix bundle; HET: 100.0
1tj7_A457 Argininosuccinate lyase; crystallin, E. coli, fuma 100.0
1k7w_A468 Delta 2 crystallin; eye lens protein, argininosucc 100.0
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 100.0
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 100.0
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 100.0
1yis_A478 Adenylosuccinate lyase; structural genomics, PSI, 100.0
2j91_A503 Adenylosuccinate lyase; disease mutation, adenylos 100.0
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 100.0
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 100.0
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 100.0
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
Probab=100.00  E-value=5.2e-99  Score=766.10  Aligned_cols=399  Identities=65%  Similarity=0.991  Sum_probs=384.3

Q ss_pred             CCC-CCHHHHHHHHHHHHHHHccccCCCCccccccCCCccccccchhHHHHHHHHHHhCCcCCCcc-cccccccCCCCCh
Q 015619            2 EYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSS   79 (403)
Q Consensus         2 ~~G-i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~vie~~l~~~~g~~~g~~~-~h~~~~vh~g~S~   79 (403)
                      +.| ||++.+++|.++|++|.++...++||++++|+|+||++|||+|||||++++|++|.++|+|. +||++|||+||||
T Consensus        82 ~~G~l~~~~a~aI~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSs  161 (482)
T 3gtd_A           82 EFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSS  161 (482)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCCh
Confidence            689 99999999999999999988889999999999999999999999999999999998899764 8999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCccCchhHHHHHHHHHHHHHHHHHHhhhh
Q 015619           80 NDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP  159 (403)
Q Consensus        80 nD~~~Ta~~l~~~~~l~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~  159 (403)
                      ||+++|+++|++++++.+.|.+.|..|+++|.++|++|++++||||||+|+||||||||||++|+++|.||++||.++++
T Consensus       162 ND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~  241 (482)
T 3gtd_A          162 NDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALK  241 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999985479999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCcccccCCCCCCCchhHHHHHHHHHHcCCCCCCCCchhhHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015619          160 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS  239 (403)
Q Consensus       160 ~~~~~~lGg~a~Gt~~~~~~~~~~~~~~~la~~LG~~~~~~~n~~da~~~rd~~~~~~~~l~~~~~~l~kia~Dl~~~~s  239 (403)
                      +++.+||||||+||+++++++|+.++.++++++|||+.++.+|++|++++||++++++++++.++++|+|||+||++|+|
T Consensus       242 ~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS  321 (482)
T 3gtd_A          242 KVYLLAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGS  321 (482)
T ss_dssp             TTTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCCccccCCCcCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999988999999999999999999999999998678999999999999999999999999999999999999999


Q ss_pred             CCCCcceeEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhccCccccccchhhHHHHhHHHHHHHHHHHH
Q 015619          240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDAS  319 (403)
Q Consensus       240 ~~~~e~gev~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  319 (403)
                      +||+|||||.+|+.++|||||||||||+.+|.++++|++|+|+++++.+....++||+|.++|++.|+++++++++.+++
T Consensus       322 gpr~g~gEi~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~  401 (482)
T 3gtd_A          322 GPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSV  401 (482)
T ss_dssp             CSSSSCCCEECCCCSCCCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHH
Confidence            99999999999988999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCccCHHHHHHHhhhhhhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHhhcCCccccc
Q 015619          320 ASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI  399 (403)
Q Consensus       320 ~~~~~~~l~~l~v~~erm~~~l~~~~~~~~~la~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~~l~~~ldp~~~v  399 (403)
                      ..+..+|+++|+||++||+++++++++++|+|++++||+.|++++++|.++|++++|++.+.+.++++|++++|||..++
T Consensus       402 ~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~  481 (482)
T 3gtd_A          402 NSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI  481 (482)
T ss_dssp             HHHHHHTTTTCEECHHHHHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHHSCC---
T ss_pred             HHHHHHHHccCEECHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 015619          400 G  400 (403)
Q Consensus       400 g  400 (403)
                      |
T Consensus       482 g  482 (482)
T 3gtd_A          482 S  482 (482)
T ss_dssp             -
T ss_pred             C
Confidence            6
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d1yfma_459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 1e-134
d1fuoa_456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 1e-125
d1vdka_460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 1e-122
d1j3ua_462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 3e-99
d1jswa_459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 5e-94
d1re5a_448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 2e-46
d1c3ca_429 a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga 1e-42
d1q5na_444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 5e-40
d1k62b_459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 2e-36
d1tj7a_455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 2e-36
d1tjva_449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 3e-33
d1dofa_402 a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py 2e-30
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  391 bits (1006), Expect = e-134
 Identities = 278/400 (69%), Positives = 319/400 (79%), Gaps = 1/400 (0%)

Query: 1   MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
              G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI+NRA EILG
Sbjct: 60  ESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILG 119

Query: 60  HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
            K G K VHPN+H N+SQSSNDTFPTVMHIAA+++  + LIP L  L N+L +KS EF  
Sbjct: 120 GKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDH 179

Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
           IVKIGRTH QDATPLTLGQEFSGY  QV+ GI RV   L  +  LAQGGTAVGTGLNTK 
Sbjct: 180 IVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKP 239

Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
           GFDVKIA  +++ET L F TA N+FEALAAHDA VE SGALNT+A SL KIA D+R LGS
Sbjct: 240 GFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGS 299

Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
           GPRCG  EL+LPENEPGSSIMPGKVNPTQ EALT VC QV+GN+ AIT  GS G FELNV
Sbjct: 300 GPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNV 359

Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
           FKP++ + LL+S+RL+ DA+ SF  +CV GI+AN  RI +LL +SLMLVT+LNPKIGYD 
Sbjct: 360 FKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDA 419

Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 399
           A+ VAK AHK+G TLK++AL+LGVL  +EFD  VVPE M+
Sbjct: 420 ASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1yfma_459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1vdka_460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1j3ua_462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1jswa_459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1fuoa_456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
d1k62b_459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1tj7a_455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1tjva_449 Argininosuccinate lyase/delta-crystallin {Domestic 100.0
d1re5a_448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1q5na_444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1f1oa_408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 100.0
d1c3ca_429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 100.0
d1dofa_402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 100.0
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-93  Score=726.34  Aligned_cols=398  Identities=70%  Similarity=1.029  Sum_probs=378.1

Q ss_pred             CCC-CCHHHHHHHHHHHHHHHccccCCCCccccccCCCccccccchhHHHHHHHHHHhCCcCCCcccccccccCCCCChh
Q 015619            2 EYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSN   80 (403)
Q Consensus         2 ~~G-i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~vie~~l~~~~g~~~g~~~~h~~~~vh~g~S~n   80 (403)
                      ++| ||++.+++|.++|++|.++...++||++++|++++++.|||+||||.++..+..|...|++.+||++|||+|+|||
T Consensus        61 ~lG~l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~~~~~~~~vhp~d~v~~gqSsn  140 (459)
T d1yfma_          61 SLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSN  140 (459)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHcCCccccccchHHhhccccccccchhhhhHHHHHHHhhccccccccCcchhhhhccchH
Confidence            689 9999999999999999999889999999999999999999999999999999999888877799999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCccCchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015619           81 DTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR  160 (403)
Q Consensus        81 D~~~Ta~~l~~~~~l~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~  160 (403)
                      |+++|+++|+++..+...|.+.|..|+++|..+|++|++|+||||||+|+||||||||||++|+++|.||++||.+++++
T Consensus       141 D~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~~~im~GRTHlQ~A~PiT~G~~~~~~~~~l~r~~~RL~~~~~~  220 (459)
T d1yfma_         141 DTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKT  220 (459)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeehhHhhCCcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999888754689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCcccccCCCCCCCchhHHHHHHHHHHcCCCCCCCCchhhHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 015619          161 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG  240 (403)
Q Consensus       161 ~~~~~lGg~a~Gt~~~~~~~~~~~~~~~la~~LG~~~~~~~n~~da~~~rd~~~~~~~~l~~~~~~l~kia~Dl~~~~s~  240 (403)
                      ++.+||||+|+||+.+..++++..+.+.+++.|||...+.+|++||+++||++++++++|++++++|+|||+||++|+|+
T Consensus       221 l~~~~lGgta~gtg~~a~~~~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~  300 (459)
T d1yfma_         221 LSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG  300 (459)
T ss_dssp             HTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhhcccchhhccccCCCcchHHHHHHHHHHcCCCCcccCchHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999888999988999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CCCcceeEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhccCccccccchhhHHHHhHHHHHHHHHHHHH
Q 015619          241 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASA  320 (403)
Q Consensus       241 ~~~e~gev~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  320 (403)
                      |+.||+|+.+|+.++||||||||+||+.+|.+++.|+++.|+.+++.+....+++|+|.+.|.+.|.+++++..+.+++.
T Consensus       301 ~~~g~~El~~~~~~~GSSiMP~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~~~~~~~~~~l~s~~~l~~~~~  380 (459)
T d1yfma_         301 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAY  380 (459)
T ss_dssp             SSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeEEeeecccccccCcccccccChhhHHHHHHHHHHhccHhhHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999899999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             HHHHhhhhcCccCHHHHHHHhhhhhhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHhhcCCccccc
Q 015619          321 SFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI  399 (403)
Q Consensus       321 ~~~~~~l~~l~v~~erm~~~l~~~~~~~~~la~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~~l~~~ldp~~~v  399 (403)
                      .+..+|+++|+||++||+++++.+.+++|+|++.+||+.|+++|++|.++|++|+|++.+.+.++++||++++||++|+
T Consensus       381 ~~~~~~i~gl~vn~erm~~~l~~s~~l~taL~~~iGy~~A~~ia~~a~~~g~~lre~~~~~~~Ls~~eld~lldP~~~l  459 (459)
T d1yfma_         381 SFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML  459 (459)
T ss_dssp             HHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHCCGGGCC
T ss_pred             HHHHHHhccCEECHHHHHHHHHhCccHHHHhcchhhHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHcCHHHhC
Confidence            9998999999999999999999999999999999999999999999999999999999999999999999999999986
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure