Citrus Sinensis ID: 015656

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
ccccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEEEccccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEEEEEEccccccEEEEEcccccEEEEcccccEEEEEccccccccccccccccccccEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEEEEEEcccEEEEEccccccccccccccEEccEEEEcccccccEEEEEccccEEEEEEcccEEEEcccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEEEc
cccccccccccccccccEEEEEEEccccEEEEEEEcccEEEEEEcccccccccccccccccccEHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEEHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccccHHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccEEEEEEcccEEEEEccccccccccccccccEccEEEEccccccEEEEEEEcccEEEEEEccEEEEEccccccccccccccccccccccccccccccccEHHHccccEEEEEEEccccEEEEEEcc
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALwgngdygrlglgslesrwrpvvcSAFEKHSLKALACGGAHTLFLTETgcvyatglndfgqlgisenigysleplrisglkKEVVQISTGyhhssaitvdgelymwgknsngqlglgkkaakvipiptkveclSGIFTKQAALGFEQSvavtgggkvlswgaggsgrlghgqessilgflrstseyTPRLIKELEGVKVKIAAAGFLHsacidengrvyifgDRAVDKMLFqegnharrpslisggelytwgsnengclgigsidvlhspervqgpfsespvdqvscgwkhtaaisegkiltwgwggshgtfsedghssggqlghgndvdyihptivNFGENVKALQVScgfnhtgalleyv
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
******TAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSP***********VDQVSCGWKHTAAISEGKILTWGWGGSHGTF**********LGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE**
*LG*************DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERV*************CGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
*****LTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.754 0.690 0.328 3e-41
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.751 0.286 0.301 2e-33
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.751 0.286 0.298 7e-33
Q5GLZ8 1057 Probable E3 ubiquitin-pro yes no 0.751 0.286 0.290 2e-31
Q15751 4861 Probable E3 ubiquitin-pro no no 0.692 0.057 0.332 3e-29
Q15034 1050 Probable E3 ubiquitin-pro no no 0.707 0.271 0.307 2e-27
F2Z461 1003 E3 ISG15--protein ligase no no 0.585 0.235 0.331 5e-26
O95714 4834 E3 ubiquitin-protein liga no no 0.645 0.053 0.297 9e-25
Q92834 1020 X-linked retinitis pigmen no no 0.736 0.291 0.296 9e-25
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.632 0.052 0.295 2e-24
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 174/362 (48%), Gaps = 58/362 (16%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 39  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 98

Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 99  RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 157

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 158 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +                        
Sbjct: 210 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYS------------------------ 242

Query: 281 PSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEG 339
                 G LYT+G ++ G LG G ++    P +++   S S + Q+S GW+HT A+ S+G
Sbjct: 243 ------GALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDG 295

Query: 340 KILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 399
           K+  WGW            +  GQ+G GN++D   P  V F ++ K +QVSCG+ HT A+
Sbjct: 296 KLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 343

Query: 400 LE 401
            E
Sbjct: 344 TE 345
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
225438323420 PREDICTED: E3 ubiquitin-protein ligase H 0.982 0.942 0.654 1e-160
356508920417 PREDICTED: probable E3 ubiquitin-protein 0.942 0.911 0.677 1e-154
224083557419 predicted protein [Populus trichocarpa] 0.965 0.928 0.684 1e-150
449453906481 PREDICTED: probable E3 ubiquitin-protein 0.925 0.775 0.657 1e-148
356518818404 PREDICTED: LOW QUALITY PROTEIN: probable 0.908 0.905 0.659 1e-148
297810989434 hypothetical protein ARALYDRAFT_487713 [ 0.960 0.891 0.638 1e-139
30682540434 regulator of chromosome condensation rep 0.965 0.896 0.635 1e-139
13548329435 putative protein [Arabidopsis thaliana] 0.965 0.894 0.634 1e-138
242071255418 hypothetical protein SORBIDRAFT_05g02090 0.905 0.873 0.579 1e-126
222616116425 hypothetical protein OsJ_34191 [Oryza sa 0.905 0.858 0.569 1e-125
>gi|225438323|ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|296082630|emb|CBI21635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/420 (65%), Positives = 332/420 (79%), Gaps = 24/420 (5%)

Query: 4   RSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV 63
           RS   +++  L+   KLG  LG C+R  SS  ++RFAALWGNGD+GRLGLGSLES+WRP 
Sbjct: 3   RSCMRVSQSALQS--KLG--LGFCRRLSSSEPRKRFAALWGNGDFGRLGLGSLESQWRPA 58

Query: 64  VCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK 123
           VCSAF+ HSL A+ACGGAHTLFLTE+GCVYA GLNDFGQLG+S +  Y+ EPL +S L K
Sbjct: 59  VCSAFDHHSLVAIACGGAHTLFLTESGCVYAAGLNDFGQLGVSVDKNYTTEPLEVSALPK 118

Query: 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183
           +++ I+ GY+HS+AIT DGELYMWGKNSNGQLGLGKKAA  + +P+KVECL+GI  K  A
Sbjct: 119 KIIHIAAGYYHSAAITADGELYMWGKNSNGQLGLGKKAANAVSVPSKVECLNGISIKMVA 178

Query: 184 LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA 243
           LG E SVA T  G+ LSWGAGGSGRLGHG ESS+LGF R++SEY PRLI+ LEG+KVK  
Sbjct: 179 LGSEHSVAATDQGEALSWGAGGSGRLGHGHESSLLGFFRTSSEYRPRLIRRLEGIKVKNV 238

Query: 244 AAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI------------------- 284
           AAG LHSACIDENG V+IFG+RA+DK  F+E  +A  PS+I                   
Sbjct: 239 AAGLLHSACIDENGSVFIFGERAMDKFGFREAKNATAPSMISELPYSKQVACGGYHTCVI 298

Query: 285 -SGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILT 343
            S GEL+TWGSNENGCLG+G ++ +H PER++GPFS++PV QVSCGWKHTAAISEG + T
Sbjct: 299 SSSGELFTWGSNENGCLGMGFMETIHFPERIEGPFSKNPVSQVSCGWKHTAAISEGNVFT 358

Query: 344 WGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV 403
           WGWGGS+GTFS+DGHSSGGQLG G+DVD+I P +V F E+V+ALQVSCGFNHTGA+LEY+
Sbjct: 359 WGWGGSYGTFSDDGHSSGGQLGQGSDVDHIKPKMVEFEESVRALQVSCGFNHTGAILEYI 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508920|ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|224083557|ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|222856514|gb|EEE94061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449453906|ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518818|ref|XP_003528074.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4-like [Glycine max] Back     alignment and taxonomy information
>gi|297810989|ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] gi|297319215|gb|EFH49637.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30682540|ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|26452773|dbj|BAC43467.1| unknown protein [Arabidopsis thaliana] gi|28973187|gb|AAO63918.1| putative UVB-resistance protein UVR8 [Arabidopsis thaliana] gi|332003957|gb|AED91340.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13548329|emb|CAC35876.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242071255|ref|XP_002450904.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor] gi|241936747|gb|EES09892.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|222616116|gb|EEE52248.1| hypothetical protein OsJ_34191 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:504956339434 RUG1 "AT5G08710" [Arabidopsis 0.672 0.624 0.641 6.9e-145
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.769 0.704 0.331 1.4e-41
TAIR|locus:2159295445 RUG3 "RCC1/UVR8/GEF-like 3" [A 0.523 0.474 0.346 6.2e-37
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.806 0.090 0.292 4.8e-26
UNIPROTKB|F1M560 3643 Herc2 "Protein Herc2" [Rattus 0.806 0.089 0.292 4.8e-26
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.806 0.068 0.292 6.5e-26
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.806 0.067 0.292 4e-26
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.806 0.067 0.292 6.6e-26
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.806 0.067 0.291 2.5e-26
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.806 0.067 0.291 2.5e-26
TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 938 (335.3 bits), Expect = 6.9e-145, Sum P(2) = 6.9e-145
 Identities = 175/273 (64%), Positives = 219/273 (80%)

Query:    14 LKQDIKLGSKLGIC-KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHS 72
             L +D KLG  +G+C  RW+SS   +RFAA+WG+GDYGRLGLG+L+S+W P VCSA   HS
Sbjct:    25 LLKDSKLGP-IGVCCSRWVSSESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHS 83

Query:    73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY 132
             + A+ACGGAHTLFLTET  V+ATGLND GQLG+S+   ++++PL +SGL K+++ IS GY
Sbjct:    84 ITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGY 143

Query:   133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192
             +HS+AITVDGELYMWGKNS+GQLGLGKKAA+V+ +PTKVE L GI  +  ALG E SVAV
Sbjct:   144 YHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAV 203

Query:   193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252
             T GG+VLSWG GGSGRLGHG +SS+ G LRS SE+TPRLIKELEG+KV   AAG LHSAC
Sbjct:   204 TDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLLHSAC 263

Query:   253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS 285
              DENG  ++FG+++++KM F    +A  PS+IS
Sbjct:   264 TDENGSAFMFGEKSINKMGFGGVRNATTPSIIS 296
GO:0003682 "chromatin binding" evidence=ISS
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159295 RUG3 "RCC1/UVR8/GEF-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019258001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (420 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-24
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 5e-23
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-11
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 7e-06
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  110 bits (276), Expect = 1e-26
 Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 8/193 (4%)

Query: 43  WGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFG 101
           WG+   G+LG  + E  +   +V   F   ++K +ACG  H+L L E G +YA G+N FG
Sbjct: 255 WGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFG 314

Query: 102 QLGISENIGYSLEPLR----ISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGL 157
           QLG   +        +           +  IS G  HS  +  DG LY +G+   GQLG+
Sbjct: 315 QLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGI 374

Query: 158 GKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHG-QESS 216
            ++    +  PTK+     +  +Q A G   ++A T  G V SWG G  G LG+G +E+ 
Sbjct: 375 QEEITIDVSTPTKLSVAIKL--EQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEAD 432

Query: 217 ILGFLRSTSEYTP 229
           +L           
Sbjct: 433 VLVPTLIRQPLLS 445

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.92
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.92
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.9
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.38
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.35
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.18
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.16
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.01
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.89
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 94.41
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.21
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 91.98
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 89.78
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 89.29
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 88.71
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 88.0
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.3
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 84.11
KOG3669 705 consensus Uncharacterized conserved protein, conta 81.92
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.2e-52  Score=377.64  Aligned_cols=341  Identities=28%  Similarity=0.490  Sum_probs=273.4

Q ss_pred             eeEEeeccccceEEEEecCCCCccCCCCCCCc-cceeeeCcc--CCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCC
Q 015656           28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLG  104 (403)
Q Consensus        28 ~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~-~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG  104 (403)
                      |....+  ....||+||+|..+|||.+..... ..|++.++.  +...|++++||..|+++|++||.||+||.|..|+||
T Consensus        60 ~~~~~~--~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg  137 (476)
T COG5184          60 HTHLLV--KMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG  137 (476)
T ss_pred             chhhhh--heeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence            444555  556699999999999999976554 889998877  567899999999999999999999999999999999


Q ss_pred             CCC---------------CCCceecceEeecC-----cCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcc
Q 015656          105 ISE---------------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKV  164 (403)
Q Consensus       105 ~~~---------------~~~~~~~p~~v~~~-----~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~  164 (403)
                      ...               .......|..++..     +.++++++||++++++|+++|+||.||....+.++.+...+..
T Consensus       138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~  217 (476)
T COG5184         138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQ  217 (476)
T ss_pred             cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccc
Confidence            876               22345678888752     2379999999999999999999999999999999888554433


Q ss_pred             ----cccCeEEeecCCceEEEEEeCCCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccc-cCce
Q 015656          165 ----IPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL-EGVK  239 (403)
Q Consensus       165 ----~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~-~~~~  239 (403)
                          ..+|.++.   ...|+++++|.+|.++|+++|+||.||++..||||....+.         ...+..+..+ .-..
T Consensus       218 k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~---------~~~~~lv~~~f~i~~  285 (476)
T COG5184         218 KTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER---------LKLVVLVGDPFAIRN  285 (476)
T ss_pred             cceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhh---------cccccccCChhhhhh
Confidence                35555554   45799999999999999999999999999999999987532         2222222221 1124


Q ss_pred             EEEEEecCceeEEEecCCcEEEEeCCCcceecccCCCCccCCeEec----------------------------CCcEEE
Q 015656          240 VKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS----------------------------GGELYT  291 (403)
Q Consensus       240 i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~p~~v~----------------------------~g~v~~  291 (403)
                      |++|+||.+|++||+++|++|+||.|.++|++.++.  ...+....                            +|.||+
T Consensus       286 i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~--~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a  363 (476)
T COG5184         286 IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSD--GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYA  363 (476)
T ss_pred             hhhcccCcceEEEEcCCCeEEEeccchhcccccCcc--cccceeeccccccccCCCceEEEEecCcceEEEEecCceEEE
Confidence            789999999999999999999999999999999811  11111110                            899999


Q ss_pred             eecCCCCCcCCCC--CCccccceeeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCC
Q 015656          292 WGSNENGCLGIGS--IDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGN  368 (403)
Q Consensus       292 wG~n~~gqlG~g~--~~~~~~p~~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~  368 (403)
                      ||.++.+|||...  +.....|.++..   ..++.+++||..|.++.+ +|+||.||+            |.+||||.++
T Consensus       364 ~Gr~~~~qlg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~------------ge~gnlG~g~  428 (476)
T COG5184         364 FGRGDRGQLGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGW------------GEHGNLGNGP  428 (476)
T ss_pred             ecCCccccccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecC------------chhhhccCCc
Confidence            9999999999997  555666666552   257999999999999999 999999999            6899999998


Q ss_pred             C-CCccccEEEec--CCCceEEEEecCCCceEEE
Q 015656          369 D-VDYIHPTIVNF--GENVKALQVSCGFNHTGAL  399 (403)
Q Consensus       369 ~-~~~~~p~~v~~--~~~~~~~~i~~G~~~t~~l  399 (403)
                      . ++...|+.++.  .+...++..-||..++++.
T Consensus       429 ~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~  462 (476)
T COG5184         429 KEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIE  462 (476)
T ss_pred             hhhhccccccccccccCCCceEEeccCcceEEEe
Confidence            7 45777888873  5666776677777766654

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-42
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 3e-42
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-40
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-39
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-26
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 4e-10
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-19
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 9e-19
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 8e-16
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 5e-15
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 1e-10
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 7e-04
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 174/362 (48%), Gaps = 58/362 (16%)
Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 40  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 100 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 159 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 210
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +                        
Sbjct: 211 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYS------------------------ 243
Query: 281 PSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEG 339
                 G LYT+G ++ G LG G ++    P +++   S S + Q+S GW+HT A+ S+G
Sbjct: 244 ------GALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDG 296
Query: 340 KILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 399
           K+  WGW            +  GQ+G GN++D   P  V F ++ K +QVSCG+ HT A+
Sbjct: 297 KLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Query: 400 LE 401
            E
Sbjct: 345 TE 346
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-91
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-86
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-78
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-70
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-25
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-90
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-89
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-74
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-71
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-57
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-80
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-79
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 6e-68
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-51
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-21
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-19
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 9e-11
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-76
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-74
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 9e-67
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-48
3of7_A473 Regulator of chromosome condensation; beta-propell 9e-71
3of7_A473 Regulator of chromosome condensation; beta-propell 5e-68
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-64
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-63
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-49
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-49
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-38
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-25
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-25
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  279 bits (715), Expect = 5e-91
 Identities = 117/362 (32%), Positives = 172/362 (47%), Gaps = 58/362 (16%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 40  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99

Query: 102 QLGISENIGYSLEPLRISGLK-KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   +      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 100 RLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
                 +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 159 EDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD------- 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +                     
Sbjct: 210 --RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGAL--------------------- 246

Query: 281 PSLISGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI-SEG 339
                    YT+G ++ G LG G ++    P +++   S S + Q+S GW+HT A+ S+G
Sbjct: 247 ---------YTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDG 296

Query: 340 KILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGAL 399
           K+  WGW               GQ+G GN++D   P  V F ++ K +QVSCG+ HT A+
Sbjct: 297 KLYGWGWNKF------------GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344

Query: 400 LE 401
            E
Sbjct: 345 TE 346
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.89
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.56
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.35
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.77
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.59
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.42
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 93.12
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 92.48
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.16
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 91.69
4g56_B357 MGC81050 protein; protein arginine methyltransfera 91.5
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 90.5
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 89.57
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 89.42
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 88.41
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 87.72
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 85.75
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 84.13
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 83.2
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 81.96
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 81.27
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 81.16
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.4e-72  Score=540.76  Aligned_cols=349  Identities=30%  Similarity=0.496  Sum_probs=311.1

Q ss_pred             eEEeeccccceEEEEecCCCCccCCCCCCCccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCCCCC
Q 015656           29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISEN  108 (403)
Q Consensus        29 ~~~~~~~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~  108 (403)
                      ..+...+++|+||+||+|.+||||.++......|+++..+...+|++|+||..|+++|+++|+||+||.|.+||||.+. 
T Consensus        11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~-   89 (389)
T 3kci_A           11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG-   89 (389)
T ss_dssp             ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-
T ss_pred             ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-
Confidence            3344445999999999999999999988888999999988888999999999999999999999999999999999984 


Q ss_pred             CCceecceEeecCcC---ceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEeC
Q 015656          109 IGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG  185 (403)
Q Consensus       109 ~~~~~~p~~v~~~~~---~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~G  185 (403)
                      ......|..++.+..   ++++|+||..|+++|+++|+||+||.|.+||||.+....  ...|..+..+.+.+|++|+||
T Consensus        90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~va~G  167 (389)
T 3kci_A           90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVDVAAG  167 (389)
T ss_dssp             SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEEEEEC
T ss_pred             cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc--CcCCeEecccCCCeEEEEEeC
Confidence            455667888876554   568999999999999999999999999999999988765  567888888888899999999


Q ss_pred             CCceEEEeCCCcEEEeeCCCCCCcCCCCCCcccccccccccccceeeccccCceEEEEEecC--ceeEEEecCCcEEEEe
Q 015656          186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFG  263 (403)
Q Consensus       186 ~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~~~~l~~~G~v~~wG  263 (403)
                      .+|+++|+++|+||+||.|.+||||.+..         .....|.+++.+.+.+|++|+||.  .|+++|+++|+||+||
T Consensus       168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~---------~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG  238 (389)
T 3kci_A          168 GAHSACVTAAGDLYTWGKGRYGRLGHSDS---------EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG  238 (389)
T ss_dssp             SSEEEEEETTSCEEEEECCGGGTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred             cCeEEEEeCCCeEEEeCCCCCCCcCCCCC---------cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence            99999999999999999999999999875         556789999988888999999995  8999999999999999


Q ss_pred             CCCcceecccCCCCccCCeEec----------------------CCcEEEeecCCCCCcCCCCCCccccceeeeCCCCCC
Q 015656          264 DRAVDKMLFQEGNHARRPSLIS----------------------GGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSES  321 (403)
Q Consensus       264 ~n~~gqlg~~~~~~~~~p~~v~----------------------~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~  321 (403)
                      .|.++|||.+.......|.++.                      +|+||+||.|.++|||.++......|+++.. +.+.
T Consensus       239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~  317 (389)
T 3kci_A          239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGK  317 (389)
T ss_dssp             CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTC
T ss_pred             CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc-CCCC
Confidence            9999999998877766676654                      8999999999999999999988999999984 4677


Q ss_pred             CEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEecCCCceEEEEecCCCceEEEE
Q 015656          322 PVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALL  400 (403)
Q Consensus       322 ~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~~~~~~~~~i~~G~~~t~~l~  400 (403)
                      +|++|+||.+|++|++ +|+||+||+            |.+||||.++..+...|++|+.+.+.++.+|+||.+||++|+
T Consensus       318 ~v~~ia~G~~h~~al~~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~  385 (389)
T 3kci_A          318 KVIAIATGSLHCVCCTEDGEVYTWGD------------NDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS  385 (389)
T ss_dssp             CEEEEEECSSEEEEEETTCCEEEEEC------------CTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred             CEEEEEeccCeEEEECCCCCEEEeeC------------CCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEe
Confidence            8999999999999999 999999999            799999999999999999999999999999999999999998


Q ss_pred             ee
Q 015656          401 EY  402 (403)
Q Consensus       401 ~~  402 (403)
                      ++
T Consensus       386 ~~  387 (389)
T 3kci_A          386 TS  387 (389)
T ss_dssp             C-
T ss_pred             cC
Confidence            76
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-36
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-19
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-11
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-11
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-13
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-09
d1jtdb_ 273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.002
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 2e-36
 Identities = 90/407 (22%), Positives = 131/407 (32%), Gaps = 102/407 (25%)

Query: 81  AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
           +H    TE G V   G  D GQLG+ EN+    +P  +S  +  VVQ   G  H+  ++ 
Sbjct: 6   SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-VVQAEAGGMHTVCLSK 64

Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC--------------------------- 173
            G++Y +G N  G LG          +P KVE                            
Sbjct: 65  SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124

Query: 174 ------------------------LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRL 209
                                      +   + A G +  V +T  G + + G G  G+L
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184

Query: 210 GHGQESSILGFLRSTSE-------YTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262
           G   E       R   E          +       V+ + A  G   +  I   G VY F
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244

Query: 263 GDRAVDKMLFQE------------------------GNHARRPSLISGGELYTWGSNENG 298
           G     ++                            G       + S G+ Y+ G  E G
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 304

Query: 299 CLGIGSIDVLHS-PERVQGPFSESPVDQVSCGWKHTAAISE-GKILTWGWGGSHGTFSED 356
            LG+G      S P  +        V  V+CG     A+++ G++  WG G +       
Sbjct: 305 RLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTN------- 354

Query: 357 GHSSGGQLGHGNDVDYIHPTIV--NFGENVKALQVSCGFNHTGALLE 401
                 QLG G D D   P  +     EN   L VS G  HT  L++
Sbjct: 355 -----YQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.37
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.18
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 93.59
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 92.18
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 89.6
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.96
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 82.75
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 80.44
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-61  Score=459.92  Aligned_cols=355  Identities=28%  Similarity=0.412  Sum_probs=287.0

Q ss_pred             eeeEEeeccccceEEEEecCCCCccCCCCCC-CccceeeeCccCCCceEEEEeCCcceEEEecCCcEEEEEcCCCCCCCC
Q 015656           27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLE-SRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGI  105 (403)
Q Consensus        27 ~~~~~~~~~~~g~v~~~G~n~~gqlG~~~~~-~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~  105 (403)
                      .|+.+++  ++|+||+||.|.+||||+++.. ....|++++.+.  +|++|+||..|++||+++|+||+||.|.+||||.
T Consensus         6 ~h~~~~~--~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~   81 (401)
T d1a12a_           6 SHRSHST--EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR   81 (401)
T ss_dssp             CCTTCCC--CCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred             eEEEEEC--CCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCc
Confidence            5788887  9999999999999999999654 588999998765  4999999999999999999999999999999999


Q ss_pred             CCCCCc-eecceEeecCcCceEEEecCCceeEEEecCCcEEEEEcCCCCCCCCCCCCCcccccCeEEeecCCceEEEEEe
Q 015656          106 SENIGY-SLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL  184 (403)
Q Consensus       106 ~~~~~~-~~~p~~v~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~~~~i~~i~~  184 (403)
                      +..... ...|..+. ...+|++|+||..|+++++++|+||+||.+..++++....... ...+..+......+|++|+|
T Consensus        82 g~~~~~~~~~~~~~~-~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~  159 (401)
T d1a12a_          82 DTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM-KKSMVPVQVQLDVPVVKVAS  159 (401)
T ss_dssp             CCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBT-BCEEEEEEECCSSCEEEEEE
T ss_pred             ccccccccccccccc-cccceeeecccccceeeccccccceeccccccccccccccCCc-cccceeeeeccCCceeEEEe
Confidence            854433 34455554 4559999999999999999999999999887666554333321 12233333445668999999


Q ss_pred             CCCceEEEeCCCcEEEeeCCCCCCcCCCCCCccccc--ccccccccceeec-----cccCceEEEEEecCceeEEEecCC
Q 015656          185 GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIK-----ELEGVKVKIAAAGFLHSACIDENG  257 (403)
Q Consensus       185 G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~~--~~~~~~~~p~~i~-----~~~~~~i~~i~~G~~~~~~l~~~G  257 (403)
                      |.+|+++++++|++|+||.+.+||||..........  ........|..+.     .....+|.+|+||.+|+++|+++|
T Consensus       160 g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g  239 (401)
T d1a12a_         160 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG  239 (401)
T ss_dssp             CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTC
T ss_pred             cccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCC
Confidence            999999999999999999999999998754221110  1111222333332     223447999999999999999999


Q ss_pred             cEEEEeCCCcceecccCCCCccCCeEec------------------------CCcEEEeecCCCCCcCCCC-CCccccce
Q 015656          258 RVYIFGDRAVDKMLFQEGNHARRPSLIS------------------------GGELYTWGSNENGCLGIGS-IDVLHSPE  312 (403)
Q Consensus       258 ~v~~wG~n~~gqlg~~~~~~~~~p~~v~------------------------~g~v~~wG~n~~gqlG~g~-~~~~~~p~  312 (403)
                      +||.||.|.+++++.........+..+.                        +++||+||.|.++|||.++ ......|+
T Consensus       240 ~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~  319 (401)
T d1a12a_         240 HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT  319 (401)
T ss_dssp             CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEE
T ss_pred             eEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCE
Confidence            9999999999999987665443333222                        8999999999999999985 45567788


Q ss_pred             eeeCCCCCCCEEEEecCCCeEEEEE-CCcEEEecCCCCCCCcccCCCCCCccccCCCCCCccccEEEec--CCCceEEEE
Q 015656          313 RVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNF--GENVKALQV  389 (403)
Q Consensus       313 ~v~~~~~~~~i~~i~~G~~h~~~lt-~g~v~~wG~~~~~~~~~~~g~N~~gqLG~g~~~~~~~p~~v~~--~~~~~~~~i  389 (403)
                      +++.   ..+|++|+||.+|++||+ ||+||+||+            |.+||||+|+..++..|++|..  +.+.++.+|
T Consensus       320 ~i~~---~~~i~~Is~G~~hs~alt~dG~v~~WG~------------n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v  384 (401)
T d1a12a_         320 LISR---LPAVSSVACGASVGYAVTKDGRVFAWGM------------GTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV  384 (401)
T ss_dssp             ECCS---SSSEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEE
T ss_pred             EcCC---CCCeEEEEeeCCEEEEEeCCCeEEEEec------------CCCCCCCCCCCCCEecCEEeeccCCCCCEEEEE
Confidence            8874   257999999999999999 999999999            8999999999999999999874  467899999


Q ss_pred             ecCCCceEEEEee
Q 015656          390 SCGFNHTGALLEY  402 (403)
Q Consensus       390 ~~G~~~t~~l~~~  402 (403)
                      +||.+||++|+++
T Consensus       385 ~~G~~hs~~l~~d  397 (401)
T d1a12a_         385 SSGGQHTVLLVKD  397 (401)
T ss_dssp             EECSSEEEEEEEE
T ss_pred             EEccceEEEEEEC
Confidence            9999999999986
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure