Citrus Sinensis ID: 015657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcccccEEEEccccccccccccccHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccHHHHHccHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEEHHHcHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccEEEccHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHccccccccHHcccccHHHHHHHHHHHHHccHHHHHcHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccHHHHcccccHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQgkscmlvagdvyrpaAIDQLVILGeqvgvpvytagtevkpsqiAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILtkldgdsrggaALSVkevsgkpiklvgrgermedlepfypdrmagrilgmGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRvigmipgmgkitpAQVREAEKSLKIMEAMIEAmtpeerekpellaespvrrkrvaqdsgktEQQVSQLVAQLFQMRVRMKNLMgvmeggslpalSNLEDALKseqkappgtarrkrrsesrrqfvdpastrpsprgfgggs
Flexible Loop (DISEMBL)
MGGEVSELVFAKSRPTVILLAglqgvgkttVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQiakqgleeakkknvdvviVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAalsvkevsgkpiklvgrgermedlepfYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIgmipgmgkitpAQVREAEKSLKIMEAMIEamtpeerekpellaespvrrkrvaqdsgkteqqvSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALkseqkappgtarrkrrsesrrqfvdpastrpsprgfgggs
Low Complexity Region (SEG)
MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTArrkrrsesrrQFVDPASTRPSPRGFGGGS
Disordered region (IsUnstruct)
*******LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK*************KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS***AAL*V*******IKLVG*******LEPFYPDRMAGRILGMGDVLSFVE********************ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK*********************************************************LVAQLFQMRVRMKNLMG*********************************************************
Disordered Region (DISOPRED)
*****SE*VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM***********IMS*NFDFNDFLKQTRTVARMGSMSRVIGMIPG****************KIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ*******************************************************************
Disordered Region (DISEMBL)
MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAE********************QLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDAL****************************************
Disordered Region (DISPRO)
*********FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM**********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
P37107	564	Signal recognition partic	yes	no	1.0	0.714	0.868	0.0
P74214	482	Signal recognition partic	N/A	no	0.838	0.701	0.588	1e-112
Q55311	485	Signal recognition partic	yes	no	0.803	0.668	0.603	1e-109
P37105	446	Signal recognition partic	yes	no	0.863	0.780	0.494	3e-95
Q54431	516	Signal recognition partic	yes	no	0.853	0.666	0.481	5e-92
O33013	521	Signal recognition partic	yes	no	0.858	0.664	0.464	5e-85
P0AGD7	453	Signal recognition partic	N/A	no	0.831	0.739	0.491	7e-84
P0AGD8	453	Signal recognition partic	yes	no	0.831	0.739	0.491	7e-84
P0AGD9	453	Signal recognition partic	N/A	no	0.831	0.739	0.491	7e-84
Q9ZK62	448	Signal recognition partic	yes	no	0.841	0.756	0.454	2e-81

>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/403 (86%), Positives = 384/403 (95%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAID
Sbjct: 162 MGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAID 221

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELK
Sbjct: 222 QLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELK 281

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           DVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 282 DVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 341

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA
Sbjct: 342 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSA 401

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEER
Sbjct: 402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEER 461

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           E+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LE
Sbjct: 462 ERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLE 521

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
           DALK+EQKAPPGTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 522 DALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564

Involved in cotranslational and post-translational sorting of thylakoid proteins. Binds GTP specifically. Activates the GTPase activity of CPFTSY when bound together. Required for light-harvesting chlorophyll a/b-binding protein (LHCP) integration into thylakoids.
Arabidopsis thaliana (taxid: 3702)

>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ffh PE=3 SV=1

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/338 (58%), Positives = 259/338 (76%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MG     L  A+  PTVIL+AGLQG GKTT +AKLA YL+KQ +S ++VA DVYRPAAID
Sbjct: 86  MGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAID 145

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL  LG+Q+ VPV+  G++  P +IA+QG+E+AK+  VD V++DTAGRLQID  MM EL 
Sbjct: 146 QLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELA 205

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           ++K+V+ P + LLVVDAMTGQEAA L  TF+ +IGITGAILTKLDGD+RGGAALSV+++S
Sbjct: 206 EIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAALSVRQIS 265

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           G+PIK VG GE++E L+PFYPDR+A RIL MGDVL+ VEKAQE +   D E++Q KI+ A
Sbjct: 266 GQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEA 325

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDF+DF+KQ R +  MGS+  ++ MIPGM K++   + + EK LK  EAMI +MT EER
Sbjct: 326 TFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEER 385

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
           + P+LLA+SP RR+R+AQ SG +E  VS+L+    +MR
Sbjct: 386 KNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMR 423

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/325 (60%), Positives = 253/325 (77%), Gaps = 1/325 (0%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MG     L  A   PTVIL+AGLQG GKTT +AKLA +L+K+G+S +LVA DVYRPAAID
Sbjct: 86  MGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPAAID 145

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL+ LG+Q+ VPV+  G++  P +IA+QG+E+A+++ +D VIVDTAGRLQID  MM+EL 
Sbjct: 146 QLITLGKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDTAGRLQIDTEMMEELA 205

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            VK  + P EVLLVVD+M GQEAA+L  +F+  IGITGAILTKLDGDSRGGAALS++ VS
Sbjct: 206 QVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIGITGAILTKLDGDSRGGAALSIRRVS 265

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           G+PIK VG GE++E L+PF+P+RMA RILGMGDVL+ VEKAQE +   D E+MQ+KI++A
Sbjct: 266 GQPIKFVGLGEKVEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAA 325

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEE 299
            FDF DFLKQ R +  MGS++  I +IPG+ GKI   Q+R+ E+ LK +EAMI +MTP+E
Sbjct: 326 KFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQE 385

Query: 300 REKPELLAESPVRRKRVAQDSGKTE 324
           R  P+LL+ SP RR R+A+  G+TE
Sbjct: 386 RRDPDLLSNSPSRRHRIAKGCGQTE 410

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain 168) GN=ffh PE=1 SV=1

 Score =  348 bits (894), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/352 (49%), Positives = 257/352 (73%), Gaps = 4/352 (1%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAI 59
           MGGE S++  AK  PTVI++ GLQG GKTT S KLAN L KK  +  MLVA D+YRPAAI
Sbjct: 87  MGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAI 146

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
            QL  LG+Q+ +PV++ G +V P +IAKQ +E+AK+++ D VI+DTAGRL ID  +MDEL
Sbjct: 147 KQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDEL 206

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
            +VK + NP E+ LVVD+MTGQ+A  +  +FN ++G+TG +LTKLDGD+RGGAALS++ V
Sbjct: 207 TNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAV 266

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +  PIK  G GE+++ LEPF+P+RMA RILGMGDVL+ +EKAQ  + ++ A+E+++K+ +
Sbjct: 267 TNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRT 326

Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPE 298
            +F  +DFL+Q   V  MG +  ++ M+PG GK+   + ++  EK L  +EA+I++MT  
Sbjct: 327 MSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVL 386

Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
           E+E+P+++  S  RRKR+A+ SG + Q+V++L+ Q  +M+  MK +  + +G
Sbjct: 387 EKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMTNMSKG 436

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3

 Score =  338 bits (866), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 170/353 (48%), Positives = 243/353 (68%), Gaps = 9/353 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAI 59
           +G E +E+  +   PT+I++ GLQG GKTT + KLAN L K++    +++A D+YRPAAI
Sbjct: 87  LGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAI 146

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
           DQL  LG+Q+ VPV+  GTE    +I  QGL +AK+   D V++DTAGRLQID+ +M EL
Sbjct: 147 DQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAKENRNDYVLIDTAGRLQIDEKLMTEL 206

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           +D+K + NP E+LLVVD+M GQEAA +   FN ++ +TG ILTK+DGD+RGGAALSV+++
Sbjct: 207 RDIKALANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQI 266

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK  G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA +   ++ + E+ +K+  
Sbjct: 267 TGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRE 326

Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTP 297
            +FDFNDF++Q   V  MGSM  ++ MIPGM    P  A V+  E  +    A++ +MTP
Sbjct: 327 NSFDFNDFIEQLDQVQNMGSMEDILKMIPGMAN-NPALANVKVDEGEIARKRAIVSSMTP 385

Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
           EERE P+LL  +P RR+R+A  SG T   V++ +    Q +   K + GVM G
Sbjct: 386 EERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAK---KMMQGVMSG 433

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.

Streptococcus mutans (taxid: 1309)

>sp|O33013|SRP54_MYCLE Signal recognition particle protein OS=Mycobacterium leprae (strain TN) GN=ffh PE=3 SV=1

 Score =  315 bits (806), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 165/355 (46%), Positives = 234/355 (65%), Gaps = 9/355 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE  +L FAK+ PTV++LAGLQG GKTT++ KLA  L++QG + +LVA D+ RPAA++
Sbjct: 86  LGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDLQRPAAVN 145

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDK 113
           QL ++GE+ GVPV+       P         +A  GL EA+ K+ DVVIVDTAGRL ID 
Sbjct: 146 QLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASAGLVEARAKHFDVVIVDTAGRLGIDD 205

Query: 114 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
            +M +   ++  +NP EVL V+DAM GQ+A      F   +G TG +LTKLDGD+RGGAA
Sbjct: 206 ELMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGDARGGAA 265

Query: 174 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 233
           LSV+EV+G PI     GE+++D + F+PDRMA RILGMGDVLS +E+A++V   E AE  
Sbjct: 266 LSVREVTGVPILFATTGEKLDDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAA 325

Query: 234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 293
             KI++      DFL+Q   V +MG +  ++GM+PG G++     +  +K L  ++A+I 
Sbjct: 326 AAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIR 385

Query: 294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 348
            MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G M
Sbjct: 386 GMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLGGM 438

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.

Mycobacterium leprae (taxid: 1769)

>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1

 Score =  311 bits (796), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 227/342 (66%), Gaps = 7/342 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
           MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI
Sbjct: 86  MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
            QL  L EQVGV  + +    KP  I    L+EAK K  DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+  
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325

Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
            + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384

Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
            +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1

 Score =  311 bits (796), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 227/342 (66%), Gaps = 7/342 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
           MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI
Sbjct: 86  MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
            QL  L EQVGV  + +    KP  I    L+EAK K  DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+  
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325

Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
            + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384

Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
            +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1

 Score =  311 bits (796), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 227/342 (66%), Gaps = 7/342 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
           MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI
Sbjct: 86  MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
            QL  L EQVGV  + +    KP  I    L+EAK K  DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+  
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325

Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
            + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384

Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
            +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQ 424

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain J99) GN=ffh PE=3 SV=1

 Score =  303 bits (775), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/348 (45%), Positives = 231/348 (66%), Gaps = 9/348 (2%)

Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
           S   FA++ PTV+L+AGLQG GKTT +AKLA+YLK + K  +L A D+ R AA++QL +L
Sbjct: 85  SGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVL 144

Query: 66  GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
           GEQVGV V+    +    +IA   L+ AK+   DV+IVD+AGRL IDK +M ELK+VK V
Sbjct: 145 GEQVGVEVFHEENK-SVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVKEV 203

Query: 126 LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 185
           LNP EVL V DA++GQ+      TFN EIG++G +L+K D DS+GG AL +    G P++
Sbjct: 204 LNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLR 263

Query: 186 LVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 245
            +G GE++ DL+ F P+R+ GR++G GD++S  EK   V+   +A+++ KK+    F FN
Sbjct: 264 FIGSGEKIPDLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQFTFN 323

Query: 246 DFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREK 302
           DFL Q   V ++GSMS +I MIPG+G +  A +  + E SL++  ++AM+ +MT +ERE 
Sbjct: 324 DFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEREN 383

Query: 303 PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ---MRVRMKNLMGV 347
           PE+L  S  RRKR+A  SG    ++++++ +  Q   M  R+ N  G+
Sbjct: 384 PEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Helicobacter pylori (strain J99) (taxid: 85963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
255578951	572	signal recognition particle protein, put	1.0	0.704	0.930	0.0
359481606	567	PREDICTED: signal recognition particle 5	0.992	0.705	0.935	0.0
224138482	576	predicted protein [Populus trichocarpa]	1.0	0.699	0.888	0.0
449451269	572	PREDICTED: signal recognition particle 5	0.997	0.702	0.915	0.0
15237580	564	signal recognition particle subunit [Ara	1.0	0.714	0.868	0.0
3746964	564	signal recognition particle 54 kDa subun	1.0	0.714	0.868	0.0
297810481	562	hypothetical protein ARALYDRAFT_487173 [	1.0	0.717	0.868	0.0
357511109	553	Signal recognition particle 54 kDa prote	0.990	0.721	0.885	0.0
356572574	565	PREDICTED: signal recognition particle 5	0.992	0.707	0.9	0.0
356505382	565	PREDICTED: signal recognition particle 5	0.992	0.707	0.9	0.0

>gi|255578951|ref|XP_002530328.1| signal recognition particle protein, putative [Ricinus communis] gi|223530132|gb|EEF32044.1| signal recognition particle protein, putative [Ricinus communis]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/403 (93%), Positives = 392/403 (97%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSELVFAK  PTVILLAGLQGVGKTTV AKLANYLKKQGKSCMLVAGDVYRPAAID
Sbjct: 170 MGGEVSELVFAKYSPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAID 229

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQVGVPVYT GTEVKPS+IAK+GLEEAKKKN+DVVIVDTAGRLQIDK MMDELK
Sbjct: 230 QLVILGEQVGVPVYTEGTEVKPSEIAKRGLEEAKKKNIDVVIVDTAGRLQIDKGMMDELK 289

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           +VKRVLNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 290 EVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVS 349

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM+QEDAE++QKKIMSA
Sbjct: 350 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSA 409

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VARMGSM+RVIGMIPGMGK+TPAQ+REAEKSLKIME+MIEAMTPEER
Sbjct: 410 KFDFNDFLKQTRAVARMGSMTRVIGMIPGMGKVTPAQIREAEKSLKIMESMIEAMTPEER 469

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           EKPELLAESP RRKR+AQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS+PALSNLE
Sbjct: 470 EKPELLAESPTRRKRIAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLE 529

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
           DALK+EQKAPPGTARRKRRSESRRQF D AS+RPSPRGFG G+
Sbjct: 530 DALKAEQKAPPGTARRKRRSESRRQFADSASSRPSPRGFGSGN 572

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481606|ref|XP_002276439.2| PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Vitis vinifera] gi|297740127|emb|CBI30309.3| unnamed protein product [Vitis vinifera]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/400 (93%), Positives = 390/400 (97%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSELVFAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCMLVAGDVYRPAAID
Sbjct: 165 MGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLAFYLKKQGKSCMLVAGDVYRPAAID 224

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQV VPVYTAGTEVKPSQIAKQGLEEA+KKN+DVVIVDTAGRLQIDKAMMDELK
Sbjct: 225 QLVILGEQVDVPVYTAGTEVKPSQIAKQGLEEARKKNIDVVIVDTAGRLQIDKAMMDELK 284

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           DVKR +NPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 285 DVKRAINPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 344

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM+QEDAEE+QKKIMSA
Sbjct: 345 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEELQKKIMSA 404

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VARMGSM+RV+GMIPGMGK+TPAQ+REAEKSLK+ME MIEAMTPEER
Sbjct: 405 KFDFNDFLKQTRAVARMGSMTRVLGMIPGMGKVTPAQIREAEKSLKMMEGMIEAMTPEER 464

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS+PALSNLE
Sbjct: 465 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLE 524

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFG 400
           + LKSEQKAPPGTARRKRRSESR+QF +PAS+RPSPRGFG
Sbjct: 525 ETLKSEQKAPPGTARRKRRSESRKQFAEPASSRPSPRGFG 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138482|ref|XP_002322825.1| predicted protein [Populus trichocarpa] gi|222867455|gb|EEF04586.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/403 (88%), Positives = 384/403 (95%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSELVFAKS PTVILLAGLQGVGKTTV AKLANYLKKQGKSCML+AGDVYRPAAID
Sbjct: 174 MGGEVSELVFAKSAPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLIAGDVYRPAAID 233

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQVGVPVYT GT+VKPS+IA++GL EAKKKN+DVVIVDTAGRLQIDK MMDELK
Sbjct: 234 QLVILGEQVGVPVYTEGTDVKPSEIARKGLSEAKKKNIDVVIVDTAGRLQIDKGMMDELK 293

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           DVK +LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 294 DVKLILNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVS 353

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYP+RMAGRILGMGDVLSFVEKAQEVM+QEDAEE+QKKIMSA
Sbjct: 354 GKPIKLVGRGERMEDLEPFYPNRMAGRILGMGDVLSFVEKAQEVMRQEDAEELQKKIMSA 413

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
           NFDFNDFLKQTR VA+MGSM+RVIGMIPGM K+TP QVREAEK+LKIMEAMIE MTPEER
Sbjct: 414 NFDFNDFLKQTRAVAKMGSMTRVIGMIPGMAKVTPGQVREAEKNLKIMEAMIEVMTPEER 473

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           EKPELLAESP RRKRVAQ SGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS+P+LSNLE
Sbjct: 474 EKPELLAESPERRKRVAQASGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPSLSNLE 533

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
           DALK++QKAPPGTARR+R++ES ++FVD  S+RP P GFG  +
Sbjct: 534 DALKTKQKAPPGTARRRRKTESSKRFVDSVSSRPGPHGFGSSN 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451269|ref|XP_004143384.1| PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Cucumis sativus] gi|449482550|ref|XP_004156318.1| PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Cucumis sativus]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/403 (91%), Positives = 390/403 (96%), Gaps = 1/403 (0%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSELVF+KS PTVILLAGLQGVGKTTV AKLANYLKKQGKSCMLVAGDVYRPAAID
Sbjct: 171 MGGEVSELVFSKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAID 230

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQVGVPVYTAGTEVKPS IAKQGL+EA+K  VDVVIVDTAGRLQID+AMMDELK
Sbjct: 231 QLVILGEQVGVPVYTAGTEVKPSDIAKQGLQEARKNKVDVVIVDTAGRLQIDRAMMDELK 290

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           +VKRV+NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 291 EVKRVINPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 350

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERM+DLEPFYPDRMAGRILGMGDVLSFVEKAQEVM+QEDAEE+QKKI+SA
Sbjct: 351 GKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEELQKKILSA 410

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VARMGSM+RVIGMIPGMGK+TPAQVREAEKSLKIME+MIEAMTPEER
Sbjct: 411 KFDFNDFLKQTRAVARMGSMTRVIGMIPGMGKVTPAQVREAEKSLKIMESMIEAMTPEER 470

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           EKPELLAESP RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS+PAL+NLE
Sbjct: 471 EKPELLAESPARRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALNNLE 530

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
           +ALK+EQKAPPGTARRKRRSESR+QF + + TR SPRGFG G+
Sbjct: 531 EALKAEQKAPPGTARRKRRSESRKQFAN-SETRSSPRGFGSGN 572

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237580|ref|NP_196014.1| signal recognition particle subunit [Arabidopsis thaliana] gi|586038|sp|P37107.1|SR54C_ARATH RecName: Full=Signal recognition particle 54 kDa protein, chloroplastic; Short=54 chloroplast protein; Short=54CP; Short=SRP54; Short=cpSRP54; AltName: Full=FFC; Flags: Precursor gi|396701|emb|CAA79981.1| 54CP [Arabidopsis thaliana] gi|7406404|emb|CAB85514.1| signal recognition particle 54CP protein precursor [Arabidopsis thaliana] gi|15293131|gb|AAK93676.1| putative signal recognition particle 54CP protein precursor [Arabidopsis thaliana] gi|24030445|gb|AAN41376.1| putative signal recognition particle 54CP protein precursor [Arabidopsis thaliana] gi|332003291|gb|AED90674.1| signal recognition particle subunit [Arabidopsis thaliana]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/403 (86%), Positives = 384/403 (95%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAID
Sbjct: 162 MGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAID 221

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELK
Sbjct: 222 QLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELK 281

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           DVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 282 DVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 341

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA
Sbjct: 342 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSA 401

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEER
Sbjct: 402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEER 461

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           E+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LE
Sbjct: 462 ERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLE 521

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
           DALK+EQKAPPGTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 522 DALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3746964|gb|AAC64139.1| signal recognition particle 54 kDa subunit precursor [Arabidopsis thaliana]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/403 (86%), Positives = 384/403 (95%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAID
Sbjct: 162 MGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAID 221

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELK
Sbjct: 222 QLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELK 281

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           DVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 282 DVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 341

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA
Sbjct: 342 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSA 401

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEER
Sbjct: 402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEER 461

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           E+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LE
Sbjct: 462 ERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLE 521

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
           DALK+EQKAPPGTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 522 DALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810481|ref|XP_002873124.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp. lyrata] gi|297318961|gb|EFH49383.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp. lyrata]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/403 (86%), Positives = 384/403 (95%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAID
Sbjct: 160 MGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAID 219

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QLVILGEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELK
Sbjct: 220 QLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELK 279

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           DVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 280 DVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 339

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA
Sbjct: 340 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSA 399

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEER
Sbjct: 400 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEER 459

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           E+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LE
Sbjct: 460 ERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLE 519

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFGGGS 403
           DALK+EQKAPPGTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 520 DALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 562

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511109|ref|XP_003625843.1| Signal recognition particle 54 kDa protein [Medicago truncatula] gi|355500858|gb|AES82061.1| Signal recognition particle 54 kDa protein [Medicago truncatula]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/400 (88%), Positives = 380/400 (95%), Gaps = 1/400 (0%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSEL FAK+ PTVILLAGLQGVGKTTV AKLANY KKQGKSCMLVAGDVYRPAAID
Sbjct: 152 MGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAID 211

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL ILG+QV VPVYTAGT+VKPS IAKQG EEAKKK +DVVIVDTAGRLQIDKAMMDELK
Sbjct: 212 QLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELK 271

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           DVKRVLNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 272 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVS 331

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAE++QKKIMSA
Sbjct: 332 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSA 391

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTR VA+MGS+SRVIGMIPGM K+TPAQ+REAE++L+IME +I+AMTPEER
Sbjct: 392 KFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVIIKAMTPEER 451

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS+P LSNLE
Sbjct: 452 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLE 511

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFG 400
           +ALK+E+KAPPGTARR++++ESRR F D ++ R  PRGFG
Sbjct: 512 EALKTEEKAPPGTARRRKKAESRRLFAD-STLRQPPRGFG 550

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572574|ref|XP_003554443.1| PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Glycine max]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/400 (90%), Positives = 382/400 (95%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSELVFAKS PTVILLAGLQGVGKTTV AKLANYLKKQGKSCMLVAGDVYRPAAID
Sbjct: 163 MGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAID 222

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL ILG+QV VPVYTAGT+VKPS+IAKQGLEEAKKK +DVVIVDTAGRLQIDK MMDELK
Sbjct: 223 QLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELK 282

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           +VK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 283 EVKKALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVS 342

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQ+VM+QEDAEE+QKKIMSA
Sbjct: 343 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQQVMRQEDAEELQKKIMSA 402

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTRTVA+MGS+SRVIGMIPGMGK+TPAQ+R+AEK+L+ MEAMIEAMTPEER
Sbjct: 403 KFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPAQIRDAEKNLQNMEAMIEAMTPEER 462

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVME GSLP LSNLE
Sbjct: 463 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLE 522

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFG 400
           +ALK+E+KAPPGTARR++RSESR  F D    RPSPRGFG
Sbjct: 523 EALKAEEKAPPGTARRRKRSESRSVFGDSTPARPSPRGFG 562

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505382|ref|XP_003521470.1| PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Glycine max]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/400 (90%), Positives = 381/400 (95%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           MGGEVSELVFAKS PTVILLAGLQGVGKTTV AKLANYLKKQGKSCMLVAGDVYRPAAID
Sbjct: 163 MGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAID 222

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL ILG+QV VPVYTAGT+VKPS+IAKQGLEEAKKK +DVVIVDTAGRLQIDK MMDELK
Sbjct: 223 QLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELK 282

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           +VK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct: 283 EVKKALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVS 342

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQ+VM+QEDAEE+QKKIMSA
Sbjct: 343 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQQVMRQEDAEELQKKIMSA 402

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
            FDFNDFLKQTRTVA+MGS+SRVIGMIPGMGK+TPAQ+R+AEK+L  MEAMIEAMTPEER
Sbjct: 403 KFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPAQIRDAEKNLLNMEAMIEAMTPEER 462

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
           EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVME GSLP LSNLE
Sbjct: 463 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLE 522

Query: 361 DALKSEQKAPPGTARRKRRSESRRQFVDPASTRPSPRGFG 400
           +ALK+E+KAPPGTARR++RSESR  F D    RPSPRGFG
Sbjct: 523 EALKAEEKAPPGTARRRKRSESRSVFGDSTPARPSPRGFG 562

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2150620	564	CPSRP54 "chloroplast signal re	1.0	0.714	0.853	2.4e-179
TIGR_CMR|CHY_1434	446	CHY_1434 "signal recognition p	0.853	0.771	0.547	2.1e-93
UNIPROTKB|Q97QD2	523	ffh "Signal recognition partic	0.853	0.657	0.487	1.3e-88
TIGR_CMR|BA_3983	449	BA_3983 "signal recognition pa	0.863	0.775	0.485	1.4e-87
UNIPROTKB|P66844	525	ffh "Signal recognition partic	0.895	0.687	0.461	2.5e-81
UNIPROTKB|P0AGD7	453	ffh [Escherichia coli K-12 (ta	0.893	0.794	0.465	2.9e-80
TIGR_CMR|CBU_0450	461	CBU_0450 "signal recognition p	0.853	0.746	0.469	2.3e-78
TIGR_CMR|GSU_0642	452	GSU_0642 "signal recognition p	0.861	0.767	0.463	1e-77
TIGR_CMR|SO_1356	457	SO_1356 "signal recognition pa	0.900	0.794	0.443	5.5e-77
TIGR_CMR|VC_0560	461	VC_0560 "signal recognition pa	0.856	0.748	0.477	9e-77

TAIR|locus:2150620 CPSRP54 "chloroplast signal recognition particle 54 kDa subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 1741 (617.9 bits), Expect = 2.4e-179, P = 2.4e-179
 Identities = 344/403 (85%), Positives = 374/403 (92%)

Query:     1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
             MGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAID
Sbjct:   162 MGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAID 221

Query:    61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
             QLVILGEQVGVPVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELK
Sbjct:   222 QLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELK 281

Query:   121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
             DVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVS
Sbjct:   282 DVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVS 341

Query:   181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
             GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA
Sbjct:   342 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSA 401

Query:   241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
              FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEER
Sbjct:   402 KFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEER 461

Query:   301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLE 360
             E+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LE
Sbjct:   462 ERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLE 521

Query:   361 DALKSEQKAPPGTAXXXXXXXXXXQFVDPASTRPSPRGFGGGS 403
             DALK+EQKAPPGTA          +FV+ AS++P PRGFG G+
Sbjct:   522 DALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISS

GO:0005048 "signal sequence binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0006617 "SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition" evidence=ISS

GO:0008312 "7S RNA binding" evidence=IEA;ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0048500 "signal recognition particle" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0080085 "signal recognition particle, chloroplast targeting" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TIGR_CMR|CHY_1434 CHY_1434 "signal recognition particle protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 190/347 (54%), Positives = 252/347 (72%)

Query:     1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
             MG   ++L  A S PT+I+L GLQG GKTT +AKLA  LKKQGK  +LVA DVYRPAAI 
Sbjct:    87 MGKTNAKLNDAGSPPTIIMLVGLQGAGKTTTAAKLAYLLKKQGKKPLLVAADVYRPAAIK 146

Query:    61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
             QL +LG+ + VPV+T G E  P  IAK  +  AK    + VI+DTAGRL I++ +MDELK
Sbjct:   147 QLQVLGDTIDVPVFTMG-EQSPVDIAKASINFAKSNLKNYVIIDTAGRLHINEELMDELK 205

Query:   121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
              +K V++P E+LLVVDAMTGQ+A  +  +FN E+G+TG ILTKLDGD++GGAALSVK V+
Sbjct:   206 KIKDVVHPHEILLVVDAMTGQDAVNVAKSFNDELGLTGVILTKLDGDTKGGAALSVKAVT 265

Query:   181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
             G PIK  G GE++E+LEPFYPDRMA RILGMGDVL+ +EKA+E +  E A++MQ+K+ S 
Sbjct:   266 GCPIKFAGMGEKIENLEPFYPDRMASRILGMGDVLTLIEKAKEALDAEKAQKMQEKLKSR 325

Query:   241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
              FD  DFL   + + +MG + +++GMIPGMGK+        EK LK +EA+I +MTPEER
Sbjct:   326 EFDLEDFLDSMQQIKKMGPLEQLLGMIPGMGKVKDIAGMVDEKELKHIEAIIYSMTPEER 385

Query:   301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 347
              KPE++  S  R+KR+A+ SG + Q+V++L+ Q  QM+  MK   G+
Sbjct:   386 RKPEIIDGS--RKKRIAKGSGTSIQEVNRLLKQFEQMKKLMKQFGGM 430

GO:0003924 "GTPase activity" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0048501 "signal recognition particle, plasma membrane targeting" evidence=ISS

UNIPROTKB|Q97QD2 ffh "Signal recognition particle protein" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 867 (310.3 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
 Identities = 172/353 (48%), Positives = 246/353 (69%)

Query:     1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC-MLVAGDVYRPAAI 59
             +G + +E++ +   PT+I++ GLQG GKTT + KLAN LKK+  +  +++A D+YRPAAI
Sbjct:    87 LGSDTAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAI 146

Query:    60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
             DQL  LG+Q+ VPV+  GTEV   +I +QGLE+A+  + D V++DTAGRLQID+ +M+EL
Sbjct:   147 DQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMNEL 206

Query:   120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
             +DVK +  P E+LLVVDAM GQEAA +   FN ++ +TG ILTK+DGD+RGGAALSV+ +
Sbjct:   207 RDVKALAQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHI 266

Query:   180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
             +GKPIK  G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA +   ++ A EM +K+  
Sbjct:   267 TGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDMLTLIEKASQEYDEQKALEMAEKMRE 326

Query:   240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTP 297
               FDFNDF+ Q   V  MG M  ++ MIPGM    PA   ++  E+ +    A++ +MTP
Sbjct:   327 NTFDFNDFIDQLDQVQNMGPMEDLLKMIPGMAN-NPALQNMKVDERQIARKRAIVSSMTP 385

Query:   298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
             EERE P+LL  +P RR+R+A  SG T  +V++ +    Q +  M+   GVM G
Sbjct:   386 EERENPDLL--NPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQ---GVMSG 433

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|BA_3983 BA_3983 "signal recognition particle protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 171/352 (48%), Positives = 250/352 (71%)

Query:     1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAI 59
             MGGE S++  A   PTVI++ GLQG GKTT + KLAN L KK  +  MLVA D+YRPAAI
Sbjct:    87 MGGEQSKIAIANKPPTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAI 146

Query:    60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
              QL  LG+Q+ +PV++ G +V P +IAKQ + +AK+ + D V++DTAG L ID+ +MDEL
Sbjct:   147 KQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEELMDEL 206

Query:   120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
               VK V  P E+ LVVDAMTGQ+A  +  +F+ ++G+TG +LTKLDGD+RGGAALS+K V
Sbjct:   207 AKVKEVAKPDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAV 266

Query:   180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
             +  PIK  G GE+++ LE F+P+RMA RILGMGDVL+ +EKAQ  + +E A+E+++K+ +
Sbjct:   267 TNTPIKFAGMGEKLDALEAFHPERMASRILGMGDVLTLIEKAQATVDEEKAKELEQKMRT 326

Query:   240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA-EKSLKIMEAMIEAMTPE 298
              +F  +DFL+Q   V ++G +  ++GM+PG  KI   +  +  EK +  +EA+I +MT  
Sbjct:   327 LSFTLDDFLEQLGQVRQLGPLDELLGMLPGANKIKGLKNAQVDEKQIGHIEAIIRSMTKL 386

Query:   299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEG 350
             ERE+PE++  S  R+KR+A+ SG T Q++++L+ Q   M+  MK + G+ +G
Sbjct:   387 EREQPEIINAS--RKKRIAKGSGTTVQEINRLIKQFDDMKKMMKTMTGMQKG 436

GO:0003924 "GTPase activity" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0048501 "signal recognition particle, plasma membrane targeting" evidence=ISS

UNIPROTKB|P66844 ffh "Signal recognition particle protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 172/373 (46%), Positives = 240/373 (64%)

Query:     1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
             +GGE  EL FAK+ PTV++LAGLQG GKTT++ KLA  L+ QG + +LVA D+ RPAA++
Sbjct:    86 LGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVN 145

Query:    61 QLVILGEQVGVPVYT----AGTEVKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRLQIDK 113
             QL ++GE+ GVPV+     A  E  P     +A  GL EA+ K+ DVVIVDTAGRL ID+
Sbjct:   146 QLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDE 205

Query:   114 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
              +M +   ++  +NP EVL V+DAM GQ+A      F   +G TG  LTKLDGD+RGGAA
Sbjct:   206 ELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAA 265

Query:   174 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 233
             LSV+EV+G PI     GE++ED + F+PDRMA RILGMGDVLS +E+A++V   + AEE 
Sbjct:   266 LSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEA 325

Query:   234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 293
               KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I 
Sbjct:   326 AAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIR 385

Query:   294 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSL 353
              MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G   G  +
Sbjct:   386 GMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLG---GMGI 440

Query:   354 PALSNLEDALKSE 366
             P +       KS+
Sbjct:   441 PGIGRKSATRKSK 453

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|P0AGD7 ffh [Escherichia coli K-12 (taxid:83333)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 175/376 (46%), Positives = 241/376 (64%)

Query:     1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
             MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI
Sbjct:    86 MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145

Query:    60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
              QL  L EQVGV  + +    KP  I    L+EAK K  DV++VDTAGRL +D+AMMDE+
Sbjct:   146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205

Query:   120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
             K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ +
Sbjct:   206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265

Query:   180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
             +GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+  
Sbjct:   266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325

Query:   240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
              + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT
Sbjct:   326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384

Query:   297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
              +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +    +GG    +
Sbjct:   385 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMK---KGGMAKMM 439

Query:   357 SNLEDALKSEQKAPPG 372
              +++  +      PPG
Sbjct:   440 RSMKGMM------PPG 449

GO:0048500 "signal recognition particle" evidence=IEA;IMP

GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0003924 "GTPase activity" evidence=IEA;ISS;IMP;IDA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA;IMP

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|CBU_0450 CBU_0450 "signal recognition particle protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 164/349 (46%), Positives = 240/349 (68%)

Query:     1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI 59
             +G E+ E+      P VI++AGLQG GKTT  AKLA +L + Q KS M+ + DVYRPAAI
Sbjct:    86 LGDELVEINLNAQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVASADVYRPAAI 145

Query:    60 DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
              QL  L  Q+    +    + KP +IAK  L++A+K+ +DV+I+DTAGRL ID  +M+E+
Sbjct:   146 QQLETLASQINAIFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLHIDNVLMEEM 205

Query:   120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
             K +   + PTE+LLVVD+M GQ+AA +  +FN  + +TG ILTKLDGD+RGGAALS++ +
Sbjct:   206 KAISDAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKLDGDTRGGAALSMRMI 265

Query:   180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
             + KPIK VG GE+++ LEPF+P+RMA RILGMGD++S VE+AQ  + Q+ A ++ KK+  
Sbjct:   266 TQKPIKFVGVGEKIDALEPFHPNRMASRILGMGDIVSLVEEAQRKVDQKQAAKIAKKLQK 325

Query:   240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTP 297
              N FDF+DFL Q + + +MG M  ++G +PGMG++   A     +K L  M+A+I++MT 
Sbjct:   326 GNRFDFDDFLAQLQQMKKMGGMQSLLGKLPGMGQLPKGASAFLDDKLLVKMQAIIQSMTL 385

Query:   298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346
             +ER  P L+  S  R++R+++ SG   Q V++L+ Q  QM+  MK + G
Sbjct:   386 KERRFPALINGS--RKRRISKGSGTGLQDVNKLLKQFVQMQKMMKRMKG 432

GO:0003924 "GTPase activity" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0048501 "signal recognition particle, plasma membrane targeting" evidence=ISS

TIGR_CMR|GSU_0642 GSU_0642 "signal recognition particle protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 165/356 (46%), Positives = 231/356 (64%)

Query:     2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 61
             GGE + L  A   P  I++ GLQG GKTT   KLA  LK Q +  +LV  DVYRPAAI+Q
Sbjct:    88 GGEDNSLDLAAKPPVPIMMVGLQGAGKTTSCGKLARLLKGQRRRPLLVPADVYRPAAIEQ 147

Query:    62 LVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 121
             L  LG Q+ V V+ +  +  P  I ++ L  A     DVVI+DTAGR QID+ +M+EL  
Sbjct:   148 LKTLGRQLSVEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQIDEYLMNELVR 207

Query:   122 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 181
             +K    P E+L V DAMTGQEA  + + FN  + ITG +LTKLDGD++GGAALS++ V+G
Sbjct:   208 IKEAAEPREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDGDAKGGAALSIRAVTG 267

Query:   182 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN 241
             KP+KLVG GE+++ LE F+ DR+  RILGMGD+L+ VEKAQ     ++AE +Q+K+  + 
Sbjct:   268 KPVKLVGVGEKLDALEVFHADRLVSRILGMGDILTLVEKAQATFDSQEAERLQQKLKKSQ 327

Query:   242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQ-VREAEKSLKIMEAMIEAMTPEE 299
             FD  DF  Q + + +MGS+  ++GMIPG+GK +   Q  + +E+ LK +EA+I +MTP E
Sbjct:   328 FDLEDFRNQLQQIKKMGSIESILGMIPGVGKAMKQLQGAQPSERELKRIEAIIGSMTPAE 387

Query:   300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM-----GVMEG 350
             R    ++  S  RR R+A+ SG T Q+V+QL+ +  + +  MK L      G+M G
Sbjct:   388 RANHAIINGS--RRLRIAKGSGTTVQEVNQLLKRFTEAQKMMKQLQKLGPKGLMRG 441

GO:0003924 "GTPase activity" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0048501 "signal recognition particle, plasma membrane targeting" evidence=ISS

TIGR_CMR|SO_1356 SO_1356 "signal recognition particle protein Ffh" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 166/374 (44%), Positives = 239/374 (63%)

Query:     3 GEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAID 60
             GE ++ L  A   P V+++AGLQG GKTT  AKL   L+ +  KS ++V+ DVYRPAAI 
Sbjct:    87 GEANQALDLATQPPAVVMMAGLQGAGKTTSVAKLGKLLRTRHKKSVLVVSADVYRPAAIK 146

Query:    61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
             QL  L  +V V  + +    KP  IAK  +  AK K +DVVI+DTAGRL +D+AMMDE+K
Sbjct:   147 QLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAKLKFIDVVILDTAGRLHVDEAMMDEIK 206

Query:   121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
              +   L P E L VVDAMTGQ+AA     FN  + +TG ILTK+DGD+RGGAALS++ ++
Sbjct:   207 ALHAALKPIETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRHIT 266

Query:   181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKI-MS 239
             GKPIK +G GE+ + LEPF+PDR+A RILGMGDVLS +E+ +  + +E A ++  K+   
Sbjct:   267 GKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEEVERGVDKEKAMKLASKVKQG 326

Query:   240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP---AQVREAEKSLKIMEAMIEAMT 296
              +FD  DF +Q + +  MG M  +I  +PG+G++ P   AQ+++  K  + MEA+I +MT
Sbjct:   327 GSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQLPPDALAQIQDG-KMTRQMEAIINSMT 385

Query:   297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 356
              +ER+ P+L+  S  R++R+A  SG   Q V++L+ Q  QM+  MK +    +GG    +
Sbjct:   386 AKERKNPDLIKGS--RKRRIAAGSGTEIQDVNRLLKQFTQMQKMMKKMSA--KGGMQKMM 441

Query:   357 SNLEDALKSEQKAP 370
               +   +    K P
Sbjct:   442 RGMRGMMPGGMKFP 455

GO:0003924 "GTPase activity" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0048501 "signal recognition particle, plasma membrane targeting" evidence=ISS

TIGR_CMR|VC_0560 VC_0560 "signal recognition particle protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 169/354 (47%), Positives = 232/354 (65%)

Query:     3 GEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV-AGDVYRPAAID 60
             GE +E L  A   P VIL+AGLQG GKTT   KL+  LK++ K  +LV + DVYRPAAI 
Sbjct:    87 GESNEALNLAAQPPAVILMAGLQGAGKTTSVGKLSKLLKERDKKKVLVVSADVYRPAAIK 146

Query:    61 QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
             QL  L   +GV  + +  + KP  IA   ++ AKKK  DV+IVDTAGRL ID+ MM E++
Sbjct:   147 QLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKKKFYDVLIVDTAGRLAIDEQMMAEIQ 206

Query:   121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
              + + +NP E L VVDAMTGQ+AA     F   + +TG ILTK+DGD+RGGAALSV+ ++
Sbjct:   207 ALHKAINPVETLFVVDAMTGQDAADTAKAFGDALPLTGVILTKVDGDARGGAALSVRHIT 266

Query:   181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
             GKPIK +G GE+ + LEPF+PDR+A RILGMGDVLS +E  Q  + QE AE++ KK    
Sbjct:   267 GKPIKFIGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRNVDQEKAEKLAKKFKEK 326

Query:   241 N-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTP 297
               FD  DF +Q   +  MG M  ++  +PGM ++ PA +++   ++  K MEA+I +MT 
Sbjct:   327 KGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL-PADMKDKVDDRVFKQMEAIINSMTM 385

Query:   298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM-GVMEG 350
             +ER+ P+L+  S  R+KR+A  SG   Q V++L+ Q  QM+  MK +  G M+G
Sbjct:   386 KERQNPDLIKGS--RKKRIAAGSGTQVQDVNRLLKQFTQMQKMMKKMQQGGMKG 437

GO:0003924 "GTPase activity" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0048501 "signal recognition particle, plasma membrane targeting" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P37107	SR54C_ARATH	No assigned EC number	0.8684	1.0	0.7145	yes	no
Q55311	SRP54_SYNE7	No assigned EC number	0.6030	0.8039	0.6680	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.691
4th Layer	2.7.1.25	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021597001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (488 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016542001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (136 aa)	•			•			•		0.962
	GSVIVG00015971001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (112 aa)	•			•	•		•		0.955
	GSVIVG00026227001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (367 aa)	•		•	•	•		•	•	0.933
	GSVIVG00019235001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (603 aa)	•		•	•			•		0.882
	GSVIVG00028236001	RecName- Full=Preprotein translocase secA subunit; (736 aa)				•			•		0.878
	rpl20	RecName- Full=50S ribosomal protein L20, chloroplastic;; Binds directly to 23S ribosomal RNA an [...] (117 aa)	•			•	•		•		0.851
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)	•			•			•		0.847
	GSVIVG00015443001	RecName- Full=Preprotein translocase secA subunit; (1045 aa)							•		0.844
	GSVIVG00019749001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)	•			•	•		•		0.831
	GSVIVG00017183001	RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)	•			•			•		0.815

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
PRK10867	433	PRK10867, PRK10867, signal recognition particle pr	0.0
COG0541	451	COG0541, Ffh, Signal recognition particle GTPase [	1e-167
TIGR00959	428	TIGR00959, ffh, signal recognition particle protei	1e-163
PRK00771	437	PRK00771, PRK00771, signal recognition particle pr	1e-127
pfam00448	196	pfam00448, SRP54, SRP54-type protein, GTPase domai	1e-104
smart00962	197	smart00962, SRP54, SRP54-type protein, GTPase doma	1e-101
cd03115	173	cd03115, SRP, The signal recognition particle (SRP	3e-97
COG0552	340	COG0552, FtsY, Signal recognition particle GTPase	2e-73
PRK10416	318	PRK10416, PRK10416, signal recognition particle-do	4e-72
TIGR00064	272	TIGR00064, ftsY, signal recognition particle-docki	1e-70
TIGR01425	429	TIGR01425, SRP54_euk, signal recognition particle	5e-64
PRK14974	336	PRK14974, PRK14974, cell division protein FtsY; Pr	6e-64
pfam02978	101	pfam02978, SRP_SPB, Signal peptide binding domain	2e-29
COG1419	407	COG1419, FlhF, Flagellar GTP-binding protein [Cell	9e-23
PRK05703	424	PRK05703, flhF, flagellar biosynthesis regulator F	2e-22
TIGR03499	283	TIGR03499, FlhF, flagellar biosynthetic protein Fl	7e-13
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-12
PRK11889	436	PRK11889, flhF, flagellar biosynthesis regulator F	9e-12
PRK06731	270	PRK06731, flhF, flagellar biosynthesis regulator F	1e-11
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	3e-11
PRK14722	374	PRK14722, flhF, flagellar biosynthesis regulator F	2e-10
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	9e-10
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	1e-09
PRK12724	432	PRK12724, PRK12724, flagellar biosynthesis regulat	2e-09
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-09
PRK12726	407	PRK12726, PRK12726, flagellar biosynthesis regulat	5e-09
PRK14721	420	PRK14721, flhF, flagellar biosynthesis regulator F	7e-09
PRK12723	388	PRK12723, PRK12723, flagellar biosynthesis regulat	2e-06
pfam01583	157	pfam01583, APS_kinase, Adenylylsulphate kinase	2e-05
COG0529	197	COG0529, CysC, Adenylylsulfate kinase and related	3e-05
cd02027	149	cd02027, APSK, Adenosine 5'-phosphosulfate kinase	2e-04
cd02035	217	cd02035, ArsA, ArsA ATPase functionas as an efflux	3e-04
cd02034	116	cd02034, CooC, The accessory protein CooC, which c	6e-04
cd02036	179	cd02036, MinD, Bacterial cell division requires th	0.001
COG0489	265	COG0489, Mrp, ATPases involved in chromosome parti	0.001
pfam01656	217	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide bi	0.002
pfam13207	114	pfam13207, AAA_17, AAA domain	0.002
pfam02374	304	pfam02374, ArsA_ATPase, Anion-transporting ATPase	0.002
pfam03205	126	pfam03205, MobB, Molybdopterin guanine dinucleotid	0.003
pfam06414	191	pfam06414, Zeta_toxin, Zeta toxin	0.003
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	0.004

>gnl|CDD|236780 PRK10867, PRK10867, signal recognition particle protein; Provisional

 Score =  527 bits (1360), Expect = 0.0
 Identities = 194/347 (55%), Positives = 254/347 (73%), Gaps = 6/347 (1%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAI 59
           +GGE SEL  A   PTVI++ GLQG GKTT + KLA YLKK+  K  +LVA DVYRPAAI
Sbjct: 86  LGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAI 145

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
           +QL  LGEQ+GVPV+ +G    P  IAK  LEEAK+   DVVIVDTAGRL ID+ +MDEL
Sbjct: 146 EQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDEL 205

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           K +K  +NP E+LLVVDAMTGQ+A      FN  +G+TG ILTKLDGD+RGGAALS++ V
Sbjct: 206 KAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGDARGGAALSIRAV 265

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+++DLEPF+PDRMA RILGMGDVLS +EKAQEV+ +E AE++ KK+  
Sbjct: 266 TGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKK 325

Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEE 299
             FD  DFL+Q + + +MG +  ++GM+PGMG +        +K LK +EA+I +MTP+E
Sbjct: 326 GKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGNMKAQL---DDKELKRIEAIINSMTPKE 382

Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346
           R  P++L  S  R++R+A+ SG T Q+V++L+ Q  QM+  MK + G
Sbjct: 383 RANPDILNGS--RKRRIAKGSGTTVQEVNRLLKQFEQMKKMMKKMKG 427

Length = 433

>gnl|CDD|223615 COG0541, Ffh, Signal recognition particle GTPase [Intracellular trafficking and secretion]

 Score =  475 bits (1226), Expect = e-167
 Identities = 196/355 (55%), Positives = 260/355 (73%), Gaps = 3/355 (0%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE SEL  AK  PTVIL+ GLQG GKTT + KLA YLKK+GK  +LVA D YRPAAI+
Sbjct: 86  LGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIE 145

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL  L EQVGVP + +GTE  P +IAK  LE+AK++  DVVIVDTAGRL ID+ +MDELK
Sbjct: 146 QLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELK 205

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           ++K V+NP E LLVVDAM GQ+A      FN  +GITG ILTKLDGD+RGGAALS + ++
Sbjct: 206 EIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAALSARAIT 265

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPIK +G GE+++DLEPF+PDR A RILGMGDVLS +EKA+EV+ +E+AE++ +K+   
Sbjct: 266 GKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKG 325

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEE 299
            F   DFL+Q   + +MG +S+++ MIPGMG K +   +   EK LK +EA+I++MTPEE
Sbjct: 326 KFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKDSDKDIELDEKKLKRIEAIIDSMTPEE 385

Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 354
           RE P+++  S  R++R+A+ SG + Q V++L+ Q  QM+  MK + G    G + 
Sbjct: 386 RENPDIINAS--RKRRIARGSGTSVQDVNKLLKQFKQMKKMMKKMSGGGGKGKMM 438

Length = 451

>gnl|CDD|233210 TIGR00959, ffh, signal recognition particle protein

 Score =  465 bits (1198), Expect = e-163
 Identities = 195/345 (56%), Positives = 256/345 (74%), Gaps = 5/345 (1%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI 59
           +GGE + L  AK  PTVIL+ GLQG GKTT   KLA YLKK QGK  +LVA D+YRPAAI
Sbjct: 85  LGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAI 144

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
           +QL +LG+QVGVPV+  G    P +IA++ LE AK+   DVVIVDTAGRLQID+ +M+EL
Sbjct: 145 EQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEEL 204

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
             +K +LNP E+LLVVDAMTGQ+A     TFN  +G+TG +LTKLDGD+RGGAALSV+ V
Sbjct: 205 AAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSV 264

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+++DLEPF+P+RMA RILGMGD+LS VEKAQEV+ +E+A+++ +K+  
Sbjct: 265 TGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKK 324

Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTP 297
             FD  DFL+Q R + +MG +S ++ MIPGMG + P+   +   EK  K +EA+I +MTP
Sbjct: 325 GQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDLELDEKQFKRIEAIISSMTP 384

Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
           EER  P++L  S  RRKR+A  SG T Q V++L+ +  QM+  MK
Sbjct: 385 EERRNPKILNPS--RRKRIAAGSGTTVQDVNKLIKRFEQMKKMMK 427

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle [Protein fate, Protein and peptide secretion and trafficking]. Length = 428

>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54; Provisional

 Score =  373 bits (959), Expect = e-127
 Identities = 150/350 (42%), Positives = 222/350 (63%), Gaps = 9/350 (2%)

Query: 3   GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62
           GE +E +    +P  I+L GLQG GKTT +AKLA Y KK+G    LVA D YRPAA DQL
Sbjct: 83  GEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQL 142

Query: 63  VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122
             L E++GVP Y         +IAK+GLE+ KK   DV+IVDTAGR  +++ +++E+K++
Sbjct: 143 KQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEI 200

Query: 123 KRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGK 182
           K  + P EVLLV+DA  GQ+A      F+  +GI G I+TKLDG ++GG ALS    +G 
Sbjct: 201 KEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGA 260

Query: 183 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANF 242
           PIK +G GE+++DLE F PDR   R+LGMGD+ S +EK +E + +E+ E+  +K+M   F
Sbjct: 261 PIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMKGKF 320

Query: 243 DFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEERE 301
              D  KQ   + +MG + +++ M+PG+G K+    +   E+ LK  +A++++MT EE E
Sbjct: 321 TLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELE 380

Query: 302 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 351
            PE++  S  R +R+A+ SG T + V +L+   ++M   MK  M  ++ G
Sbjct: 381 NPEIINAS--RIRRIARGSGTTVEDVRELLKY-YKM---MKKAMKQLKKG 424

Length = 437

>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain

 Score =  306 bits (786), Expect = e-104
 Identities = 119/196 (60%), Positives = 147/196 (75%)

Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           P VILL GLQG GKTT  AKLA YLKKQGK  +LVA D +R AAI+QL  L E++GVPV+
Sbjct: 1   PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVF 60

Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
            +GT   P+ +A   +E+AK +N DVV+VDTAGRLQ DK +MDELK +KRV+ P EVLLV
Sbjct: 61  GSGTGSDPAAVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLV 120

Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
           +DA TGQ A      FN  +GITG ILTKLDGD++GGAALS+   +GKPIK +G GE+++
Sbjct: 121 LDATTGQNALNQAKAFNEAVGITGVILTKLDGDAKGGAALSIAAETGKPIKFIGVGEKID 180

Query: 195 DLEPFYPDRMAGRILG 210
           DLEPF P+R   R+LG
Sbjct: 181 DLEPFDPERFVSRLLG 196

This family includes relatives of the G-domain of the SRP54 family of proteins. Length = 196

>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain

 Score =  297 bits (763), Expect = e-101
 Identities = 103/197 (52%), Positives = 131/197 (66%), Gaps = 1/197 (0%)

Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
           P VILL G  GVGKTT  AKLA  LK +G K  +LVA D +R AA++QL    E +GV  
Sbjct: 1   PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVP 60

Query: 74  YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
              G    P  +AK  +E AK +  DVV++DTAGRL  D+ +M+ELK +KRV+ P EVLL
Sbjct: 61  VAGGEGADPVAVAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLL 120

Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
           V DA TGQ+A      FN  +G+TG ILTKLDG ++GGAALS+   +G PIK +G GE++
Sbjct: 121 VSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAALSIAAETGLPIKFIGTGEKV 180

Query: 194 EDLEPFYPDRMAGRILG 210
            DLEPF P+R   R+LG
Sbjct: 181 PDLEPFDPERFVSRLLG 197

This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins. Length = 197

>gnl|CDD|239389 cd03115, SRP, The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

 Score =  287 bits (736), Expect = 3e-97
 Identities = 116/173 (67%), Positives = 139/173 (80%)

Query: 16  TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 75
           TVILL GLQGVGKTT +AKLA YLKK+GK  +LVA D YRPAAI+QL +LGEQVGVPV+ 
Sbjct: 1   TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE 60

Query: 76  AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 135
            G    P  IAK+ +E A+++N DVVIVDTAGRLQID+ +M+ELK +KRV+ P EVLLVV
Sbjct: 61  EGEGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVV 120

Query: 136 DAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
           DAMTGQ+A      FN  +GITG ILTKLDGD+RGGAALS++ V+GKPIK +G
Sbjct: 121 DAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSIRAVTGKPIKFIG 173

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. Length = 173

>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular trafficking and secretion]

 Score =  232 bits (593), Expect = 2e-73
 Identities = 98/213 (46%), Positives = 135/213 (63%), Gaps = 6/213 (2%)

Query: 4   EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
           ++   +  + +P VIL  G+ GVGKTT  AKLA YLK+QGKS +L AGD +R AAI+QL 
Sbjct: 128 DLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLE 187

Query: 64  ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 123
           + GE++GVPV +      P+ +A   ++ AK + +DVV++DTAGRL   K +MDELK + 
Sbjct: 188 VWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIV 247

Query: 124 RVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVK 177
           RV+       P E+LLV+DA TGQ A +    FN  +G+ G ILTKLDG ++GG  LS+ 
Sbjct: 248 RVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIA 307

Query: 178 EVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210
              G PIK +G GE  +DL PF  +     +LG
Sbjct: 308 YELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340

Length = 340

>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional

 Score =  228 bits (583), Expect = 4e-72
 Identities = 94/209 (44%), Positives = 132/209 (63%), Gaps = 6/209 (2%)

Query: 8   LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE 67
           L   + +P VIL+ G+ GVGKTT   KLA+  K QGK  +L AGD +R AAI+QL + GE
Sbjct: 107 LNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166

Query: 68  QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 127
           +VGVPV        P+ +A   ++ AK + +DV+I+DTAGRL     +M+ELK +KRV+ 
Sbjct: 167 RVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIK 226

Query: 128 ------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 181
                 P EVLLV+DA TGQ A +    F+  +G+TG ILTKLDG ++GG   ++ +  G
Sbjct: 227 KADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELG 286

Query: 182 KPIKLVGRGERMEDLEPFYPDRMAGRILG 210
            PIK +G GE ++DL+PF  +     +LG
Sbjct: 287 IPIKFIGVGEGIDDLQPFDAEEFVDALLG 315

Length = 318

>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein FtsY

 Score =  223 bits (570), Expect = 1e-70
 Identities = 100/209 (47%), Positives = 134/209 (64%), Gaps = 6/209 (2%)

Query: 7   ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 66
           EL+  +++P VIL  G+ GVGKTT  AKLAN LKKQGKS +L AGD +R AAI+QL    
Sbjct: 64  ELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWA 123

Query: 67  EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 126
           +++GV V        P+ +A   +++AK +N+DVV++DTAGRLQ    +MDELK +KRV+
Sbjct: 124 KRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVI 183

Query: 127 ------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
                  P EVLLV+DA TGQ A      FN  +G+TG ILTKLDG ++GG  LS+    
Sbjct: 184 KKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYEL 243

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRIL 209
             PIK +G GE+++DL PF  D     + 
Sbjct: 244 KLPIKFIGVGEKIDDLAPFDADWFVEALF 272

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein [Protein fate, Protein and peptide secretion and trafficking]. Length = 272

>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54

 Score =  210 bits (537), Expect = 5e-64
 Identities = 107/326 (32%), Positives = 183/326 (56%), Gaps = 4/326 (1%)

Query: 12  KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
           K +  VI+  GLQG GKTT   KLA Y +++G    LV  D +R  A DQL     +  +
Sbjct: 97  KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARI 156

Query: 72  PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
           P Y + TE  P +IA +G+E+ KK+N D++IVDT+GR + + ++ +E+  V   + P  +
Sbjct: 157 PFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNI 216

Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
           + V+D   GQ A A    F   + +   I+TKLDG ++GG ALS    +  PI  +G GE
Sbjct: 217 IFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGE 276

Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
            ++D E F       ++LGMGD+   ++K Q++   ++ + + +K+    F   D  +Q 
Sbjct: 277 HIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIEKLKEGTFTLRDMYEQF 336

Query: 252 RTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAM--IEAMTPEERE--KPELLA 307
           + + +MG + +++ MIPG      ++  E E   KI + M  +++MT +E +    ++ +
Sbjct: 337 QNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFS 396

Query: 308 ESPVRRKRVAQDSGKTEQQVSQLVAQ 333
           + P R +RVA+ SG++ + V +L+ Q
Sbjct: 397 KQPSRIQRVARGSGRSIRDVQELLEQ 422

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. Length = 429

>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional

 Score =  207 bits (530), Expect = 6e-64
 Identities = 93/207 (44%), Positives = 129/207 (62%)

Query: 4   EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
           ++ E + +K +P VI+  G+ G GKTT  AKLA YLKK G S ++ AGD +R  AI+QL 
Sbjct: 129 DLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE 188

Query: 64  ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 123
              E++GV V        P+ +A   +E AK + +DVV++DTAGR+  D  +MDELK + 
Sbjct: 189 EHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIV 248

Query: 124 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 183
           RV  P  V+ V DA+ G +A      FN  +GI G ILTK+D D++GGAALS+  V GKP
Sbjct: 249 RVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKP 308

Query: 184 IKLVGRGERMEDLEPFYPDRMAGRILG 210
           I  +G G+  +DL PF PD    ++LG
Sbjct: 309 ILFLGVGQGYDDLIPFDPDWFVDKLLG 335

Length = 336

>gnl|CDD|202493 pfam02978, SRP_SPB, Signal peptide binding domain

 Score =  109 bits (275), Expect = 2e-29
 Identities = 43/99 (43%), Positives = 70/99 (70%), Gaps = 4/99 (4%)

Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTPEE 299
           F   DFL+Q + + +MG +S+++ MIPGMGK+ P    V   EK LK +EA+I++MTP+E
Sbjct: 2   FTLRDFLEQLQQIKKMGPLSKLLSMIPGMGKLMPKEKNVELDEKKLKRIEAIIDSMTPKE 61

Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
           R+ PE++  S  R++R+A+ SG + Q+V++L+ Q  QM+
Sbjct: 62  RDNPEIINGS--RKRRIAKGSGTSVQEVNKLLKQFKQMK 98

Length = 101

>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion]

 Score = 98.6 bits (246), Expect = 9e-23
 Identities = 70/200 (35%), Positives = 105/200 (52%), Gaps = 15/200 (7%)

Query: 17  VILLAGLQGVGKTTVSAKLANY--LKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           VI L G  GVGKTT  AKLA    + K+ K   ++  D YR  A++QL    + +GVP+ 
Sbjct: 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264

Query: 75  TAGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 132
                      + + L EA +  ++ DV++VDTAGR Q DK  ++ELK++  V +  EV 
Sbjct: 265 VV--------YSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVY 316

Query: 133 LVVDA-MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
           LV+ A    ++   ++  F+    I G I TKLD  +  G   S+   +  P+  V  G+
Sbjct: 317 LVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQ 375

Query: 192 RM-EDLEPFYPDRMAGRILG 210
           R+ ED+    PD +  RILG
Sbjct: 376 RVPEDIVVANPDYLVRRILG 395

Length = 407

>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 98.0 bits (245), Expect = 2e-22
 Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 18/202 (8%)

Query: 17  VILLAGLQGVGKTTVSAKLAN--YLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           V+ L G  GVGKTT  AKLA    L    K   L+  D YR  A++QL    + +G+PV 
Sbjct: 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE 282

Query: 75  TAGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKD-VKRVLNPTEV 131
                        + L +A +  ++ DV+++DTAGR Q DK +++ELK  ++    P +V
Sbjct: 283 VVYD--------PKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDV 334

Query: 132 LLVVDAMTGQE--AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 189
            LV+ + T +      +   F+  + + G I TKLD  S  G+ LS+   SG PI  +  
Sbjct: 335 YLVL-SATTKYEDLKDIYKHFSR-LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTN 392

Query: 190 GERM-EDLEPFYPDRMAGRILG 210
           G+R+ +D++   P+ +   +LG
Sbjct: 393 GQRVPDDIKVANPEELVRLLLG 414

Length = 424

>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 12/102 (11%)

Query: 10  FAKSRPTVILLAGLQGVGKTTVSAKLANY--LKKQGKSCMLVAGDVYRPAAIDQLVILGE 67
               R  VI L G  GVGKTT  AKLA    L+   K   L+  D YR  A++QL    E
Sbjct: 190 PILERGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAE 249

Query: 68  QVGVPVYTAGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAG 107
            +GVPV  A           + L EA    ++ D++++DTAG
Sbjct: 250 ILGVPVKVARDP--------KELAEALDRLRDKDLILIDTAG 283

[Cellular processes, Chemotaxis and motility]. Length = 283

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 64.7 bits (157), Expect = 1e-12
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 14  RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
              VIL+ G  G GKTT++  LA  L   G   + + G+      +DQL+++        
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 74  YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL-------QIDKAMMDELKDVKRVL 126
            +           +  L  A+K   DV+I+D    L        +       L  + +  
Sbjct: 61  GSGE------LRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSE 114

Query: 127 NPTEVLLVVDAMTGQEAAALVTTFNIEIGI 156
               V+L  +       A L   F+  I +
Sbjct: 115 KNLTVILTTNDEKDLGPALLRRRFDRRIVL 144

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 65.9 bits (160), Expect = 9e-12
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
           +E VF K   T+ L+ G  GVGKTT  AK+A     + K+   +  D  R   + QL   
Sbjct: 233 TENVFEKEVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 291

Query: 66  GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
            + +G  V     E   ++      EEA+   VD +++DTAG+       ++E+ +    
Sbjct: 292 VKTIGFEVIAVRDEAAMTRALTYFKEEAR---VDYILIDTAGKNYRASETVEEMIETMGQ 348

Query: 126 LNPTEVLLVVDA-MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184
           + P  + L + A M  ++   ++T F  +I I G + TK D  +  G  L +  VS  PI
Sbjct: 349 VEPDYICLTLSASMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSGELLKIPAVSSAPI 407

Query: 185 KLVGRGE 191
            L+  G+
Sbjct: 408 VLMTDGQ 414

Length = 436

>gnl|CDD|75717 PRK06731, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
           +E VF K   T+ L+ G  GVGKTT  AK+A     + K+   +  D  R   + QL   
Sbjct: 67  TENVFEKEVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 125

Query: 66  GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
            + +G  V     E   ++      EEA+   VD +++DTAG+       ++E+ +    
Sbjct: 126 VKTIGFEVIAVRDEAAMTRALTYFKEEAR---VDYILIDTAGKNYRASETVEEMIETMGQ 182

Query: 126 LNPTEVLLVVDA-MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 184
           + P  + L + A M  ++   ++T F  +I I G + TK D  +  G  L +  VS  PI
Sbjct: 183 VEPDYICLTLSASMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSGELLKIPAVSSAPI 241

Query: 185 KLVGRGE 191
            L+  G+
Sbjct: 242 VLMTDGQ 248

Length = 270

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%)

Query: 17  VILLAGLQGVGKTTVSAKL-ANYLKKQGKSCM-LVAGDVYRPAAIDQLVILGEQVGVPVY 74
           V+ L G  GVGKTT +AKL A  + ++G   + L+  D +R  A++QL I G  +GVPV+
Sbjct: 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH 246

Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
                VK +   +  L     K+  +V++DT G  Q D+ + +++  +  V  P   LL+
Sbjct: 247 A----VKDAADLRFALAALGDKH--LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLL 300

Query: 135 VDAMT-GQEAAALVTTFNIEIG--ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
           ++A + G     +V  +    G  + G I+TKLD  +  G AL        P+  V  G+
Sbjct: 301 LNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQ 360

Query: 192 RM-EDLEP 198
           ++ E LE 
Sbjct: 361 KVPEHLEL 368

Length = 767

>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 17/193 (8%)

Query: 14  RPTVILLAGLQGVGKTTVSAKLAN--YLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
           R  V  L G  GVGKTT +AKLA    ++       L+  D YR    +QL I G+ +GV
Sbjct: 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195

Query: 72  PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
           PV+     VK     +  L E + K++  V++DT G  Q D+ + D++  +     P + 
Sbjct: 196 PVHA----VKDGGDLQLALAELRNKHM--VLIDTIGMSQRDRTVSDQIAMLHGADTPVQR 249

Query: 132 LLVVDAMT-GQEAAALVTTFNIEIG--------ITGAILTKLDGDSRGGAALSVKEVSGK 182
           LL+++A + G     +V  +    G        + G ILTKLD  S  G  L        
Sbjct: 250 LLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKL 309

Query: 183 PIKLVGRGERMED 195
           P+  V  G+++ +
Sbjct: 310 PVHYVSTGQKVPE 322

Length = 374

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           VI L G  G GKTT  AKLA     Q   +   LV  D  R    +QL   G Q+G+ V+
Sbjct: 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 411

Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
            A +      + +      + ++  +V++DTAG  Q D+A+  +L  + R       LLV
Sbjct: 412 EADSAESLLDLLE------RLRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLV 464

Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
           + A         V          G +LTKLD   R G+ALSV      PI  V  G+R+ 
Sbjct: 465 LPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVP 524

Query: 195 D 195
           D
Sbjct: 525 D 525

Length = 559

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 59/152 (38%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 76
           VI++ G  GVGKTT++A LA  L K+GK  +L+                           
Sbjct: 1   VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID-------------------------- 34

Query: 77  GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVD 136
                                 D V++DT   L +       L  +  +L    V++V  
Sbjct: 35  ----------------------DYVLIDTPPGLGL-----LVLLCLLALLAADLVIIVTT 67

Query: 137 AMTGQEAAALVTT------FNIEIGITGAILT 162
                   A   T          +   G ++ 
Sbjct: 68  PEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 12  KSRPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG 70
           K++  V+   G  G GKTT  AKLA  Y    GKS  L   D YR AAI+QL    + +G
Sbjct: 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMG 279

Query: 71  VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL---N 127
           +P Y       P +  K+  E   +   +++++DTAG    +   ++ ++         +
Sbjct: 280 MPFY-------PVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKD 332

Query: 128 PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD 165
             E LLV+ + +       V      +     +LTKLD
Sbjct: 333 SVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370

Length = 432

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 63/183 (34%), Positives = 88/183 (48%), Gaps = 42/183 (22%)

Query: 9   VFAKSRPTVILLAGLQGVGKTTVSAKL-ANYLKKQGKSCM-LVAGDVYRPAAIDQLVILG 66
           VFA   PT        GVGKTT +AKL A  + + G S + L+  D YR    +QL I G
Sbjct: 258 VFALMGPT--------GVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYG 309

Query: 67  EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL------- 119
           + +GVPV+     VK +   +  L E + K+  +V++DT G  Q D+ + +++       
Sbjct: 310 KILGVPVHA----VKDAADLRLALSELRNKH--IVLIDTIGMSQRDRMVSEQIAMLHGAG 363

Query: 120 KDVKR--VLNPT---EVLL-VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
             VKR  +LN T   + L  VV A  G              G+ G ILTKLD  +  G A
Sbjct: 364 APVKRLLLLNATSHGDTLNEVVQAYRGP-------------GLAGCILTKLDEAASLGGA 410

Query: 174 LSV 176
           L V
Sbjct: 411 LDV 413

Length = 484

>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF; Provisional

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 7/188 (3%)

Query: 10  FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV 69
           F  S   +I L G  GVGKTT   KL   L KQ ++   +  D +R  A++Q     +++
Sbjct: 201 FDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL 260

Query: 70  GVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT 129
            V +  A +   P+++ +          VD +++DT GR  + +  + E+     V++P 
Sbjct: 261 DVELIVATS---PAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPD 317

Query: 130 EVLLVVDAMTGQEAAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLV 187
             L      +G ++A ++T      EI I G I+TK+D  +R G   +V + +  P+  +
Sbjct: 318 --LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYM 375

Query: 188 GRGERMED 195
             G+ + +
Sbjct: 376 TDGQNITE 383

Length = 407

>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 56.9 bits (137), Expect = 7e-09
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 9/183 (4%)

Query: 17  VILLAGLQGVGKTTVSAKLAN--YLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           V  L G  GVGKTT +AKLA    ++       L+  D YR    +QL I G+ +GV V 
Sbjct: 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252

Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLV 134
           +    +K     +  L E + K+  +V++DT G  Q D+ + +++  + +     + LL+
Sbjct: 253 S----IKDIADLQLMLHELRGKH--MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLL 306

Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM- 193
           ++A +  +    V +     GI G I+TK+D  +  G AL         +  V  G+++ 
Sbjct: 307 LNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAVIRRKLVLHYVTNGQKVP 366

Query: 194 EDL 196
           EDL
Sbjct: 367 EDL 369

Length = 420

>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 22/180 (12%)

Query: 14  RPTVILLAGLQGVGKTTVSAKLANYL----KKQGKSCMLVAGDVYRPAAIDQLVILGEQV 69
           +  V +L G  GVGKTT  AKLA         +  +  ++  D YR  A  Q+   G+ +
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 70  GVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP- 128
           G+PV      ++  +  K+  E  + K+ D+V+VDT G+   D   + E+K+   +LN  
Sbjct: 233 GIPV----KAIESFKDLKE--EITQSKDFDLVLVDTIGKSPKDFMKLAEMKE---LLNAC 283

Query: 129 ---TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV-----KEVS 180
               E  L V + T       +            I TKLD  +  G  +S+     KEVS
Sbjct: 284 GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVS 343

Length = 388

>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
          R   I   GL G GK+T++  L   L  QG S  ++ GD  R
Sbjct: 1  RGCTIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42

Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157

>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
            +  VI   GL G GK+T++  L   L  +G    L+ GD  R
Sbjct: 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63

Length = 197

>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
          VI L GL G GK+T++  L   L ++G+   ++ GD  R
Sbjct: 1  VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. Length = 149

>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 53/177 (29%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------IDQLVILGEQVG 70
           VI   G  GVGKTT++A  A  L ++GK  +LV+ D   PA       +  L        
Sbjct: 1   VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD---PAHNLSDKGLPNLSDAFIVED 57

Query: 71  VPVYT--AGTEVKPSQIAKQ-----------------GLEEA----------KKKNVDVV 101
             +       EV  ++  ++                 G+EE            +   DV+
Sbjct: 58  PEIAPNLYREEVDATRRVERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVI 117

Query: 102 IVDTA--G---RLQIDKAMMDELKDVKRVLNPTEVLLVV--DAMTGQEAAALVTTFN 151
           + DTA  G   RL     + + L D +R    T   LV   + +   E    +T   
Sbjct: 118 VFDTAPTGHTLRL----LVRELLTDPER----TSFRLVTLPEKLPLYETERAITELA 166

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. Length = 217

>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52
           I + G  GVGKTT++A LA YL ++GK  + +  D
Sbjct: 1  KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. Length = 116

>gnl|CDD|238993 cd02036, MinD, Bacterial cell division requires the formation of a septum at mid-cell

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 45/153 (29%)

Query: 25  GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ 84
           GVGKTT +A L   L + G   +L+  D+     +D ++ L  +V   VYT         
Sbjct: 10  GVGKTTTTANLGTALAQLGYKVVLIDADLGLR-NLDLILGLENRV---VYTL-------- 57

Query: 85  IAKQGLEEAKKKNV---DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ 141
                       +V   D +++D+   ++          D        E LLV       
Sbjct: 58  -----------HDVLAGDYILIDSPAGIERGFITAIAPAD--------EALLVTTP---- 94

Query: 142 EAAALVTTFNI-------EIGITGAILTKLDGD 167
           E ++L     +        I + G I+ ++  D
Sbjct: 95  EISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. Length = 179

>gnl|CDD|223563 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 44/201 (21%)

Query: 22  GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG--EQVGVPVYTAGTE 79
           G  GVGK+TV+  LA  L + GK  +L+  D+  P+      +LG     G+    AG  
Sbjct: 65  GKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPS---IPRMLGLENLPGLTELLAGEA 121

Query: 80  VKP---------------------------SQIAKQGLEEAKKKNVDVVIVDTA-GRLQI 111
           ++P                           S+   Q LE+      D VI+DT  G    
Sbjct: 122 LEPVIQHDGIKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDA 181

Query: 112 DKAMMDELKDVKRVLNPTEVLLVV--DAMTGQEAAALVTTFN-IEIGITGAILTKLDGDS 168
           D  ++  + D         V++V        ++    +       I + G +        
Sbjct: 182 DATVLQRIPD--------GVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFIC 233

Query: 169 RGGAALSVKEVSGKPIKLVGR 189
                   ++ + +    +G 
Sbjct: 234 PRCGEGGGEKYAERYGPYLGS 254

Length = 265

>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 35/189 (18%), Positives = 57/189 (30%), Gaps = 56/189 (29%)

Query: 25  GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------IDQLVILGEQVGVPVYTAG- 77
           GVGKTT++A LA  L K+G   +L+  D     +       + L    E V      A  
Sbjct: 9   GVGKTTLAANLARALAKRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIVDAQALQAIA 68

Query: 78  -----------------------------TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 108
                                         E K     +  LE   K   D VI+D    
Sbjct: 69  AAIVPSRNLDPLLLIPSNLSLENFESELIVEGKRESRLRAALESLIKLAYDYVIIDGPPG 128

Query: 109 LQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI--------EIGITGAI 160
           L   +           ++    +++ ++     E  A+     +         + I G +
Sbjct: 129 L--GELT------ANALVAADILVVPIEP----EGVAVEGAQRLLELIEDLGVLDILGVV 176

Query: 161 LTKLDGDSR 169
           L K+D    
Sbjct: 177 LNKVDRGDE 185

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 217

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 17 VILLAGLQGVGKTTVSAKLANYL 39
          +IL+ G  G GK+T++ KLA  L
Sbjct: 1  IILITGPPGSGKSTLAKKLAEKL 23

Length = 114

>gnl|CDD|217004 pfam02374, ArsA_ATPase, Anion-transporting ATPase

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
             I   G  GVGKTTVS   A  L +QGK  +LV+ D   PA
Sbjct: 1  MRWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTD---PA 40

This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. Length = 304

>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 10/43 (23%)

Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI 59
          ++L+ G +  GKTT+  KL NYLK++G          YR A +
Sbjct: 2  IVLVVGPKDSGKTTLIRKLLNYLKRRG----------YRVAVV 34

This protein contains a P-loop. Length = 126

>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 13  SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP--AAIDQLVILGEQVG 70
            RP  +LL G  G GKT ++  L   L   G + + +  D  R      D+L        
Sbjct: 10  ERPVAVLLGGQPGAGKTELARALLEEL--GGGNVVRIDPDELRTYHPDYDELQKAD---- 63

Query: 71  VPVYTAGTEVKP--SQIAKQGLEEAKKKNVDVVIVDTAGR 108
                A    +P  S+  ++ ++ A ++  + +I++   R
Sbjct: 64  --PKDASELTQPDASRWVEKLIDYAIERGYN-IILEGTLR 100

This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid. Length = 191

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 4   EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV-AGDVYRPAAIDQL 62
            + E +        +LL G  G GKTT++  +AN L + G   + + A D+     + +L
Sbjct: 9   ALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67

Query: 63  VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL--QIDKAMMDELK 120
                                   +   E A+K    V+ +D    L      A++  L+
Sbjct: 68  FGHFL------------------VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLE 109

Query: 121 DVKRVLNPTEVLLVVDA 137
            +  +    E + V+ A
Sbjct: 110 TLNDLRIDRENVRVIGA 126

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	100.0
KOG0780	483	consensus Signal recognition particle, subunit Srp	100.0
PRK10867	433	signal recognition particle protein; Provisional	100.0
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	100.0
PRK00771	437	signal recognition particle protein Srp54; Provisi	100.0
TIGR00959	428	ffh signal recognition particle protein. This mode	100.0
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	100.0
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	100.0
TIGR00064	272	ftsY signal recognition particle-docking protein F	100.0
PF02978	104	SRP_SPB: Signal peptide binding domain; InterPro:	100.0
PRK10416	318	signal recognition particle-docking protein FtsY;	100.0
PRK14974	336	cell division protein FtsY; Provisional	100.0
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	99.96
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	99.95
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	99.95
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	99.94
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	99.94
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	99.93
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.93
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	99.92
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	99.92
KOG0781	587	consensus Signal recognition particle receptor, al	99.92
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	99.92
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	99.91
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	99.89
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	99.88
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	99.82
cd02117	212	NifH_like This family contains the NifH (iron prot	99.73
PRK13232	273	nifH nitrogenase reductase; Reviewed	99.72
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	99.72
PRK13235	274	nifH nitrogenase reductase; Reviewed	99.71
PRK11670	369	antiporter inner membrane protein; Provisional	99.69
PRK13233	275	nifH nitrogenase reductase; Reviewed	99.69
PRK13236	296	nitrogenase reductase; Reviewed	99.69
cd02040	270	NifH NifH gene encodes component II (iron protein)	99.68
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	99.68
CHL00072	290	chlL photochlorophyllide reductase subunit L	99.67
PRK13234	295	nifH nitrogenase reductase; Reviewed	99.67
PRK13230	279	nitrogenase reductase-like protein; Reviewed	99.66
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	99.65
TIGR01287	275	nifH nitrogenase iron protein. This model describe	99.65
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	99.65
PHA02518	211	ParA-like protein; Provisional	99.64
cd03110	179	Fer4_NifH_child This protein family's function is	99.62
cd02032	267	Bchl_like This family of proteins contains bchL an	99.62
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	99.62
CHL00175	281	minD septum-site determining protein; Validated	99.62
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	99.61
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	99.61
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	99.61
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	99.6
PRK13849	231	putative crown gall tumor protein VirC1; Provision	99.6
PRK13231	264	nitrogenase reductase-like protein; Reviewed	99.6
COG2894	272	MinD Septum formation inhibitor-activating ATPase	99.6
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	99.59
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	99.59
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	99.59
cd02036	179	MinD Bacterial cell division requires the formatio	99.57
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	99.57
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	99.56
PRK13869	405	plasmid-partitioning protein RepA; Provisional	99.56
PHA02519	387	plasmid partition protein SopA; Reviewed	99.55
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	99.55
PRK10818	270	cell division inhibitor MinD; Provisional	99.55
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	99.55
PRK10037	250	cell division protein; Provisional	99.55
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	99.54
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	99.54
PRK11519	719	tyrosine kinase; Provisional	99.54
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	99.54
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	99.53
COG1192	259	Soj ATPases involved in chromosome partitioning [C	99.52
PRK13705	388	plasmid-partitioning protein SopA; Provisional	99.52
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	99.5
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	99.48
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	99.48
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	99.47
PF00142	273	Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot	99.46
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.46
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.46
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	99.45
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	99.45
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	99.45
COG1348	278	NifH Nitrogenase subunit NifH (ATPase) [Inorganic	99.44
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	99.44
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.44
cd03114	148	ArgK-like The function of this protein family is u	99.42
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	99.42
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.39
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	99.38
cd03111	106	CpaE_like This protein family consists of proteins	99.36
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	99.35
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	99.3
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	99.28
PRK13768	253	GTPase; Provisional	99.27
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	99.25
COG1149	284	MinD superfamily P-loop ATPase containing an inser	99.24
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.24
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.21
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.18
COG1159	298	Era GTPase [General function prediction only]	99.16
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	99.16
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	99.14
cd02034	116	CooC The accessory protein CooC, which contains a	99.14
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	99.1
PRK00784	488	cobyric acid synthase; Provisional	99.09
TIGR00313	475	cobQ cobyric acid synthase CobQ.	99.07
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	99.05
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.04
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	99.03
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	99.01
PRK12374	231	putative dithiobiotin synthetase; Provisional	99.0
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.97
PRK05632	684	phosphate acetyltransferase; Reviewed	98.97
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	98.96
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.89
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.89
PRK13886	241	conjugal transfer protein TraL; Provisional	98.89
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.88
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.83
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.82
cd03112	158	CobW_like The function of this protein family is u	98.8
COG1341	398	Predicted GTPase or GTP-binding protein [General f	98.8
PRK00007	693	elongation factor G; Reviewed	98.78
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.76
PRK12739	691	elongation factor G; Reviewed	98.74
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.73
PRK00089	292	era GTPase Era; Reviewed	98.72
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.66
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.64
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.64
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.62
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.59
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.57
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.57
PRK13351	687	elongation factor G; Reviewed	98.56
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.52
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.51
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.49
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.49
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.48
PRK15494	339	era GTPase Era; Provisional	98.46
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.43
PRK12740	668	elongation factor G; Reviewed	98.39
smart00382	148	AAA ATPases associated with a variety of cellular	98.37
PRK00889	175	adenylylsulfate kinase; Provisional	98.35
KOG2825	323	consensus Putative arsenite-translocating ATPase [	98.35
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	98.34
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.33
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.32
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.32
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.32
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.31
COG1160	444	Predicted GTPases [General function prediction onl	98.31
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	98.29
cd00881	189	GTP_translation_factor GTP translation factor fami	98.28
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	98.27
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.27
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.27
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.26
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	98.24
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.23
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	98.23
PRK06067	234	flagellar accessory protein FlaH; Validated	98.19
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	98.19
COG0523	323	Putative GTPases (G3E family) [General function pr	98.17
PRK12736	394	elongation factor Tu; Reviewed	98.17
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.17
cd00983	325	recA RecA is a bacterial enzyme which has roles in	98.15
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.15
KOG1533	290	consensus Predicted GTPase [General function predi	98.14
PRK04296	190	thymidine kinase; Provisional	98.14
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.13
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.13
PLN03127	447	Elongation factor Tu; Provisional	98.11
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.11
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.1
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.09
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.09
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.08
PRK00049	396	elongation factor Tu; Reviewed	98.06
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.06
PRK09354	349	recA recombinase A; Provisional	98.05
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.04
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	98.04
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.03
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.02
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.02
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.02
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.02
PRK05973	237	replicative DNA helicase; Provisional	98.02
CHL00071	409	tufA elongation factor Tu	98.01
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.01
PRK12735	396	elongation factor Tu; Reviewed	98.01
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.01
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	98.0
KOG0462	650	consensus Elongation factor-type GTP-binding prote	97.99
PHA02542	473	41 41 helicase; Provisional	97.99
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.99
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.99
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.99
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.98
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.98
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.98
PRK15453	290	phosphoribulokinase; Provisional	97.97
PRK09866	741	hypothetical protein; Provisional	97.96
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	97.96
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.96
PRK10218	607	GTP-binding protein; Provisional	97.96
PRK05541	176	adenylylsulfate kinase; Provisional	97.96
cd03116	159	MobB Molybdenum is an essential trace element in t	97.95
PRK12298	390	obgE GTPase CgtA; Reviewed	97.95
PRK06526	254	transposase; Provisional	97.94
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	97.93
PRK11823	446	DNA repair protein RadA; Provisional	97.92
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.92
PRK05433	600	GTP-binding protein LepA; Provisional	97.92
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.92
PLN00043	447	elongation factor 1-alpha; Provisional	97.91
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.91
PRK08233	182	hypothetical protein; Provisional	97.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.91
PTZ00141	446	elongation factor 1- alpha; Provisional	97.91
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.9
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	97.89
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.87
PRK04328	249	hypothetical protein; Provisional	97.87
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.86
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	97.85
PRK00093	435	GTP-binding protein Der; Reviewed	97.85
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.84
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.84
PTZ00416	836	elongation factor 2; Provisional	97.83
PRK00093	435	GTP-binding protein Der; Reviewed	97.83
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.83
PLN03126	478	Elongation factor Tu; Provisional	97.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.83
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	97.83
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	97.83
PRK06762	166	hypothetical protein; Provisional	97.82
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.82
PRK06696	223	uridine kinase; Validated	97.82
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.81
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.81
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.81
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.8
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	97.8
PRK12317	425	elongation factor 1-alpha; Reviewed	97.8
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.8
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	97.8
PRK07667	193	uridine kinase; Provisional	97.79
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.79
PRK08727	233	hypothetical protein; Validated	97.79
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.77
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.76
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.76
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.76
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.76
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.76
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.75
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.74
PF00154	322	RecA: recA bacterial DNA recombination protein; In	97.73
PRK12296	500	obgE GTPase CgtA; Reviewed	97.73
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.72
PRK15467	158	ethanolamine utilization protein EutP; Provisional	97.72
COG1160	444	Predicted GTPases [General function prediction onl	97.71
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.71
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.71
PRK07560	731	elongation factor EF-2; Reviewed	97.7
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.69
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.69
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.69
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.68
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.68
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.68
COG4240	300	Predicted kinase [General function prediction only	97.67
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.67
PRK12297	424	obgE GTPase CgtA; Reviewed	97.66
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.66
PRK07952	244	DNA replication protein DnaC; Validated	97.66
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.66
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.65
COG1084	346	Predicted GTPase [General function prediction only	97.65
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	97.65
PRK12402	337	replication factor C small subunit 2; Reviewed	97.64
PRK03003	472	GTP-binding protein Der; Reviewed	97.64
PHA00729	226	NTP-binding motif containing protein	97.64
PRK06893	229	DNA replication initiation factor; Validated	97.64
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.64
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.63
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	97.63
PRK03846	198	adenylylsulfate kinase; Provisional	97.63
TIGR00345	284	arsA arsenite-activated ATPase (arsA). The N-termi	97.61
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.6
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.6
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.6
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.59
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.58
PF13479	213	AAA_24: AAA domain	97.57
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.57
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.56
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	97.56
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.55
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	97.55
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.55
PRK08760	476	replicative DNA helicase; Provisional	97.54
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.54
TIGR00665	434	DnaB replicative DNA helicase. This model describe	97.54
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.53
PRK05480	209	uridine/cytidine kinase; Provisional	97.53
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.53
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.53
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.53
PLN03046	460	D-glycerate 3-kinase; Provisional	97.52
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.52
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.51
PLN02796	347	D-glycerate 3-kinase	97.51
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.51
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.51
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	97.5
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.5
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.5
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	97.5
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.5
PLN03118	211	Rab family protein; Provisional	97.5
PRK12422	445	chromosomal replication initiation protein; Provis	97.5
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.48
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.48
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.48
PF13245	76	AAA_19: Part of AAA domain	97.47
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.47
PRK09165	497	replicative DNA helicase; Provisional	97.46
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.46
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	97.46
PRK03003	472	GTP-binding protein Der; Reviewed	97.46
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.45
PHA02530	300	pseT polynucleotide kinase; Provisional	97.45
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.45
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.44
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.44
PRK08084	235	DNA replication initiation factor; Provisional	97.44
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.43
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.43
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.42
PRK09302	509	circadian clock protein KaiC; Reviewed	97.42
PRK05595	444	replicative DNA helicase; Provisional	97.42
PRK11058	426	GTPase HflX; Provisional	97.42
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.41
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.41
COG2403	449	Predicted GTPase [General function prediction only	97.41
PRK05439	311	pantothenate kinase; Provisional	97.41
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.4
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	97.4
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.4
PRK06835	329	DNA replication protein DnaC; Validated	97.39
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	97.39
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.39
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.38
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	97.38
PRK06761	282	hypothetical protein; Provisional	97.38
PRK08181	269	transposase; Validated	97.38
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.38
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.37
PRK08506	472	replicative DNA helicase; Provisional	97.37
PRK09302	509	circadian clock protein KaiC; Reviewed	97.36
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.36
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.36
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.36
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.36
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.35
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.35
PRK04213	201	GTP-binding protein; Provisional	97.35
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.35
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.35
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.34
cd01881	176	Obg_like The Obg-like subfamily consists of five w	97.34
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.34
PRK09183	259	transposase/IS protein; Provisional	97.34
PRK01184	184	hypothetical protein; Provisional	97.33
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.33
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.33
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	97.33
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.33
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.33
PRK05306	787	infB translation initiation factor IF-2; Validated	97.32
PLN00223	181	ADP-ribosylation factor; Provisional	97.32
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.32
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.32
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.31
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	97.31
PRK04000	411	translation initiation factor IF-2 subunit gamma;	97.31
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	97.3
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.3
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	97.3
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	97.3
PF00004	132	AAA: ATPase family associated with various cellula	97.3
PRK12377	248	putative replication protein; Provisional	97.29
PRK05748	448	replicative DNA helicase; Provisional	97.29
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.29
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.29
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	97.29
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.29
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.29
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.28
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.28
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.28
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	97.27
cd03113	255	CTGs CTP synthetase (CTPs) is a two-domain protein	97.27
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.26
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.26
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	97.25
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.25
KOG1805	1100	consensus DNA replication helicase [Replication, r	97.25
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.25
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.25
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.25
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.25
PRK12299	335	obgE GTPase CgtA; Reviewed	97.24
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.24
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.24
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	97.24
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.24
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.23
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.23
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.22
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.22
PRK06749	428	replicative DNA helicase; Provisional	97.22
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	97.22
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	97.22
PTZ00035	337	Rad51 protein; Provisional	97.22
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.22
CHL00189	742	infB translation initiation factor 2; Provisional	97.22
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.21
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	97.21
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.21
PRK05642	234	DNA replication initiation factor; Validated	97.21
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.2
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.19
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.18
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	97.18
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	97.17
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.17
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.17
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.17
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	97.17
PRK13695	174	putative NTPase; Provisional	97.17
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.17
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.17
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	97.17
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.16
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	97.16
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.15
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	97.15
PRK04040	188	adenylate kinase; Provisional	97.14
PTZ00133	182	ADP-ribosylation factor; Provisional	97.14
PRK05636	505	replicative DNA helicase; Provisional	97.14
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.13
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	97.13
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.13
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.12
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	97.12
PRK08006	471	replicative DNA helicase; Provisional	97.11
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	97.11
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.11
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	97.11
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.09
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.09
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.08
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.08
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.07
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.06
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.06
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.06
PRK07004	460	replicative DNA helicase; Provisional	97.06
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.05
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.05
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	97.05
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.04
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.04
PTZ00301	210	uridine kinase; Provisional	97.03
PRK06904	472	replicative DNA helicase; Validated	97.02
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.01
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.01
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.01
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.01
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	96.99
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	96.98
PRK04004	586	translation initiation factor IF-2; Validated	96.98
PTZ00369	189	Ras-like protein; Provisional	96.98
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.97
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.97
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	96.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	96.96
COG2229	187	Predicted GTPase [General function prediction only	96.96
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	96.96
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	96.96
PRK06321	472	replicative DNA helicase; Provisional	96.96
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	96.96

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-93  Score=703.26  Aligned_cols=345  Identities=56%  Similarity=0.913  Sum_probs=333.0

Q ss_pred             CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657            1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV   80 (403)
Q Consensus         1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~   80 (403)
                      ||++.+++++..++|.+|+++|++||||||+|++||+||+++|++|++|.||+|||++++||.+++++.++++|..+...
T Consensus        86 lG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~  165 (451)
T COG0541          86 LGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK  165 (451)
T ss_pred             hCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC
Confidence            57777888888889999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657           81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI  160 (403)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI  160 (403)
                      +|++++++++++++...||+|||||+|++++|+.++.|+.++...++|+++++|+|+++||++.+.++.|++.++++|||
T Consensus       166 ~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvI  245 (451)
T COG0541         166 DPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVI  245 (451)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 015657          161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA  240 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~  240 (403)
                      +||+|+++++|+++++.+.+|.||+|+|+||++++|++|||+++++|+|||||+.+|+|++++.+++++++++++++.+|
T Consensus       246 lTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g  325 (451)
T COG0541         246 LTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKG  325 (451)
T ss_pred             EEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCC-CCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhh
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD  319 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~-~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g  319 (403)
                      +||++||++|++++.||||++++++||||++ .....+.+.+|+++++|++||+|||++||+||++|  ++||++|||+|
T Consensus       326 ~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii--~~SR~rRIA~G  403 (451)
T COG0541         326 KFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDII--NASRKRRIARG  403 (451)
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHhCCCCCCCCchhhhhccHHHHHHHHHHHHcCCHHHhhCcccc--ChHHHHHHHhc
Confidence            9999999999999999999999999999998 33333566789999999999999999999999999  58999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 015657          320 SGKTEQQVSQLVAQLFQMRVRMKNLMGV  347 (403)
Q Consensus       320 sg~~~~~v~~l~~~~~~~~~~~~~~~~~  347 (403)
                      ||++++|||+||+||++|++|||+|.++
T Consensus       404 SG~sv~dVn~Llkq~~~m~~mmk~m~~~  431 (451)
T COG0541         404 SGTSVQDVNKLLKQFKQMKKMMKKMSGG  431 (451)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999874

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-86  Score=635.51  Aligned_cols=395  Identities=39%  Similarity=0.631  Sum_probs=374.1

Q ss_pred             CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657            2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK   81 (403)
Q Consensus         2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~   81 (403)
                      +.+.+.+.+.+.+|.||+++|++|+||||+|.+||+|++++|++|.+|++|+||++++||+..++...++|+|.++++.+
T Consensus        88 dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d  167 (483)
T KOG0780|consen   88 DPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD  167 (483)
T ss_pred             CCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccc
Confidence            45667888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      |+.++.++++.++.++||+||+||.|++..+..++.|+.++.+++.|+.+++|+|+++||.+..+++.|++.+.+.+||+
T Consensus       168 pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIl  247 (483)
T KOG0780|consen  168 PVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVIL  247 (483)
T ss_pred             hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657          162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN  241 (403)
Q Consensus       162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~  241 (403)
                      ||+|+++++|.++++.+.++.||.|||+||+++|||+|+|++|++|+||+||+..|+|++++.. .++..++.+++..|.
T Consensus       248 TKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~~kl~~gk  326 (483)
T KOG0780|consen  248 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELVEKLKQGK  326 (483)
T ss_pred             EecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998 888999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcC
Q 015657          242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSG  321 (403)
Q Consensus       242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg  321 (403)
                      ||+.|||+|++.+.||||++++++|||||+.++..+.++.+.++++|.++|+|||++|+++|+++..++||+.|||+|||
T Consensus       327 Ftlrd~y~Qfq~imkmGp~s~v~~MiPG~s~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R~~RvArgSG  406 (483)
T KOG0780|consen  327 FTLRDFYDQFQNIMKMGPLSQVLGMIPGMSMMSKGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSRIMRVARGSG  406 (483)
T ss_pred             ccHHHHHHHHHHHHhhCCHHHHHhhCCCcccCCCcchhHHHHHHHHHHHHHHhcChhhccCccccccCchHhhhhhccCC
Confidence            99999999999999999999999999999988777778888999999999999999999999999889999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhHHHHhccccCCCCchhhcccc-chhhhhccCCCCCCCCCCCCC
Q 015657          322 KTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTARRKRR-SESRRQFVDPASTRPSPRGFG  400 (403)
Q Consensus       322 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  400 (403)
                      ++++||.+||.||++|+++||+++  +..|.+|.| ++++  ++.+.+||++++++.. ...++.+.+++ .+++.|+||
T Consensus       407 ~~v~eV~ell~q~~~~~~~~kk~~--~~~G~~~~l-g~~~--~~~~~~~~~~l~q~~~~~~~~~~~~~mg-~k~mm~~fg  480 (483)
T KOG0780|consen  407 TSVQEVMELLAQYKKFAAMMKKIG--GIKGIFGAL-GNPN--KNMNPAPMAKLKQQMAKMGPQRLLQQMG-SKNMMRMFG  480 (483)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhc--CCCCccccc-CCcc--cccCcCChHHHHHHHHhcccHHHHHHhc-cchhhHhhc
Confidence            999999999999999999999998  455778877 4444  7789999999999888 55555555554 899999999


Q ss_pred             CCC
Q 015657          401 GGS  403 (403)
Q Consensus       401 ~~~  403 (403)
                      |++
T Consensus       481 ~g~  483 (483)
T KOG0780|consen  481 GGN  483 (483)
T ss_pred             CCC
Confidence            974

>PRK10867 signal recognition particle protein; Provisional

Probab=100.00  E-value=3.5e-78  Score=610.52  Aligned_cols=341  Identities=57%  Similarity=0.928  Sum_probs=322.0

Q ss_pred             CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC
Q 015657            1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE   79 (403)
Q Consensus         1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~   79 (403)
                      ||+....+++...+|++|+++|++||||||++++||.+|+++ |++|++|++|+|||++++|+..+++..+++++.....
T Consensus        86 l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~  165 (433)
T PRK10867         86 LGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDG  165 (433)
T ss_pred             hCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCC
Confidence            345555677777789999999999999999999999999998 9999999999999999999999999999999987766


Q ss_pred             CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEE
Q 015657           80 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA  159 (403)
Q Consensus        80 ~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~Gv  159 (403)
                      .+|.+++.+++..++..+||+|||||||+++.+..++.++..+...+.|+++++|+|+++++++.+.++.|++.+++.|+
T Consensus       166 ~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~gi  245 (433)
T PRK10867        166 QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGV  245 (433)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEE
Confidence            78999999999888777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhc
Q 015657          160 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS  239 (403)
Q Consensus       160 IlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~  239 (403)
                      |+||+|++.++|.++++...++.||.|+|+|++++|+++|+|++++++++|+||+.+|+|++++.+++++++++++++.+
T Consensus       246 IlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~~~~~  325 (433)
T PRK10867        246 ILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAKKLKK  325 (433)
T ss_pred             EEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhh
Q 015657          240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD  319 (403)
Q Consensus       240 ~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g  319 (403)
                      |+||++||++|++++.||||++++++||||++++..   +.+++++++|++||+|||++||+||++|  ++||++|||+|
T Consensus       326 g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~~~~~---~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~RIa~G  400 (433)
T PRK10867        326 GKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGNMKA---QLDDKELKRIEAIINSMTPKERANPDIL--NGSRKRRIAKG  400 (433)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHhCCCcccccc---cccHHHHHHHHHHHHcCCHHHHhCcccc--chHHHHHHHcc
Confidence            999999999999999999999999999999987543   3567899999999999999999999999  57999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015657          320 SGKTEQQVSQLVAQLFQMRVRMKNLMG  346 (403)
Q Consensus       320 sg~~~~~v~~l~~~~~~~~~~~~~~~~  346 (403)
                      ||++++|||+||+||++|++|||+|.+
T Consensus       401 sG~~~~~v~~ll~~~~~~~~~~~~~~~  427 (433)
T PRK10867        401 SGTTVQEVNRLLKQFEQMKKMMKKMKG  427 (433)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999876

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=100.00  E-value=3.8e-77  Score=599.57  Aligned_cols=340  Identities=31%  Similarity=0.578  Sum_probs=317.0

Q ss_pred             CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657            1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV   80 (403)
Q Consensus         1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~   80 (403)
                      ||+....+.+...+|++|+++|++||||||++++||.+|+++|++|++|++|+||+++++|+..+++..++|++......
T Consensus        86 l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~  165 (429)
T TIGR01425        86 VDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTES  165 (429)
T ss_pred             hCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCC
Confidence            35555567777778999999999999999999999999999999999999999999999999999999999999877777


Q ss_pred             CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657           81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI  160 (403)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI  160 (403)
                      +|..++.++++.++..+||+|||||||+++.+..++.++..+.....|++++||+|++.++++.+++..|++.+++.|+|
T Consensus       166 dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I  245 (429)
T TIGR01425       166 DPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI  245 (429)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence            89999999999987779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 015657          161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA  240 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~  240 (403)
                      +||+|+++++|.++++...++.||.|+|+|++++++++|+|++++++++|+||+.+|+|++++.+++++++++.+++.+|
T Consensus       246 lTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~k~~~~  325 (429)
T TIGR01425       246 ITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIEKLKEG  325 (429)
T ss_pred             EECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-CCch-hhhHhHHHHHHHHHHHhCCCHHhhcC--ccccccCccHHHHH
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPA-QVREAEKSLKIMEAMIEAMTPEEREK--PELLAESPVRRKRV  316 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~~~~-~~~~~~~~~~~~~~~i~smt~~e~~~--p~~~~~~~~r~~ri  316 (403)
                      +||++||++|++++.||||+++|++||||+++ +... ..+.+++++++|++||+|||++||+|  |++|+.++||++||
T Consensus       326 ~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~sR~~RI  405 (429)
T TIGR01425       326 TFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPSRIQRV  405 (429)
T ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCccHHHHH
Confidence            99999999999999999999999999999984 4221 22467899999999999999999998  99995457999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHHH
Q 015657          317 AQDSGKTEQQVSQLVAQLFQMRVR  340 (403)
Q Consensus       317 a~gsg~~~~~v~~l~~~~~~~~~~  340 (403)
                      |+|||++++|||+||+||++|++|
T Consensus       406 a~GSG~~~~~V~~ll~~~~~~~~~  429 (429)
T TIGR01425       406 ARGSGRSIRDVQELLEQYKKFAQM  429 (429)
T ss_pred             HccCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999664

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=100.00  E-value=1.9e-76  Score=599.11  Aligned_cols=351  Identities=42%  Similarity=0.714  Sum_probs=321.4

Q ss_pred             CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657            2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK   81 (403)
Q Consensus         2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~   81 (403)
                      |+....+.+. .+|++|+++|++|+||||++++||.+|+++|++|++|++|++||++.+|+..++...+++++......+
T Consensus        83 ~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d  161 (437)
T PRK00771         83 GEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKD  161 (437)
T ss_pred             CCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccC
Confidence            3333334343 578999999999999999999999999999999999999999999999999999999999987765667


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      +..+++++++.+.  .+|+|||||||+++.+..++.|+..+.....|+++++|+|+++++++.+.++.|+..+++.|+|+
T Consensus       162 ~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIl  239 (437)
T PRK00771        162 AVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIII  239 (437)
T ss_pred             HHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEEEE
Confidence            8888889898884  57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657          162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN  241 (403)
Q Consensus       162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~  241 (403)
                      ||+|+++++|.++++...++.||.|+|+|++++|+++|+|+++++++|||||+.+|+|++++.+++++++++.+++.+|+
T Consensus       240 TKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~  319 (437)
T PRK00771        240 TKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMKGK  319 (437)
T ss_pred             ecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-CCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhc
Q 015657          242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDS  320 (403)
Q Consensus       242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gs  320 (403)
                      ||++||++|++++.||||++++++||||+++ ++..+.+.+++++++|++||+|||++||+||++|  ++||++|||+||
T Consensus       320 f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~Ria~Gs  397 (437)
T PRK00771        320 FTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEII--NASRIRRIARGS  397 (437)
T ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHhCcCccccchhhhhcccHHHHHHHHHHHHcCCHHHHhCcccc--cHHHHHHHHccC
Confidence            9999999999999999999999999999985 4433334678999999999999999999999999  579999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhHHHH
Q 015657          321 GKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDA  362 (403)
Q Consensus       321 g~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (403)
                      |++++|||+||+||++|++|||+|.+.     .|.+..++++
T Consensus       398 G~~~~~v~~ll~~~~~~~~~~~~~~~~-----~~~~~~~~~~  434 (437)
T PRK00771        398 GTTVEDVRELLKYYKMMKKAMKQLKKG-----KGKMGKLMKQ  434 (437)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCC-----CchHHHHHHh
Confidence            999999999999999999999998653     3566666654

>TIGR00959 ffh signal recognition particle protein

Probab=100.00  E-value=9.3e-76  Score=592.74  Aligned_cols=341  Identities=57%  Similarity=0.932  Sum_probs=317.5

Q ss_pred             CCCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC
Q 015657            1 MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE   79 (403)
Q Consensus         1 ~g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~   79 (403)
                      ||.....+.+...+|++++++|++||||||++++||.+|. +.|++|++|+||++||++.+|+..++...+++++.....
T Consensus        85 l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~  164 (428)
T TIGR00959        85 LGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKG  164 (428)
T ss_pred             hCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCC
Confidence            3454455777667899999999999999999999999987 579999999999999999999999999999999987777


Q ss_pred             CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEE
Q 015657           80 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA  159 (403)
Q Consensus        80 ~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~Gv  159 (403)
                      .+|.+++.++++.+...+||+|||||||+++.|..++.++..+...+.|+++++|+|+++++++.+.+..|...+++.|+
T Consensus       165 ~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~gi  244 (428)
T TIGR00959       165 QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGV  244 (428)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEE
Confidence            78988888898888778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhc
Q 015657          160 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS  239 (403)
Q Consensus       160 IlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~  239 (403)
                      |+||+|++.++|.++++...+++||.|+++|++++|+++|+|+++++++||+||+.+|+|++++.+++++++++.+++.+
T Consensus       245 IlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~~~~~  324 (428)
T TIGR00959       245 VLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMKK  324 (428)
T ss_pred             EEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCch--hhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHH
Q 015657          240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVA  317 (403)
Q Consensus       240 ~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~--~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria  317 (403)
                      |.||++||++|++++.||||++++++||||++++...  ..+.+++++++|++||+|||++||+||++|  ++||++|||
T Consensus       325 ~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~--~~sR~~RIa  402 (428)
T TIGR00959       325 GQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDLELDEKQFKRIEAIISSMTPEERRNPKIL--NPSRRKRIA  402 (428)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHhCcCccccccccccccccHHHHHHHHHHHHcCCHHHHhCcccc--cHHHHHHHH
Confidence            9999999999999999999999999999999865321  123578899999999999999999999999  579999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHH
Q 015657          318 QDSGKTEQQVSQLVAQLFQMRVRMKN  343 (403)
Q Consensus       318 ~gsg~~~~~v~~l~~~~~~~~~~~~~  343 (403)
                      +|||++++|||+||+||++|++|||+
T Consensus       403 ~GsG~~~~~v~~ll~~~~~~~~~~~~  428 (428)
T TIGR00959       403 AGSGTTVQDVNKLIKRFEQMKKMMKK  428 (428)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999888874

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=100.00  E-value=8.4e-37  Score=293.39  Aligned_cols=199  Identities=49%  Similarity=0.804  Sum_probs=190.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      .++|.+|+++|-.|+||||+.++||++|.++|++|++..||+||.++++|+..++++.|++++......+|..++.++++
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999986678899999999999


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCC------ceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP------TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~------~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                      +++..+||+|||||+|+++.+..+|.||..+.+++.+      +++++|+|+++||+++++++.|++.+++.|+|+||+|
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlD  295 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLD  295 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecc
Confidence            9999999999999999999999999999999999864      4589999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          166 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       166 ~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      +++++|.++++.+.++.||+|+|.|+.++||.+|+++.|++.+++
T Consensus       296 gtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~  340 (340)
T COG0552         296 GTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG  340 (340)
T ss_pred             cCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence            999999999999999999999999999999999999999887653

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=1.6e-34  Score=265.40  Aligned_cols=196  Identities=48%  Similarity=0.722  Sum_probs=184.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      |++|+++|++||||||++++||++++.+|++|.+|.+|.+|.++++|++.+++..+++++......+|.+.++++++.+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~   80 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR   80 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence            78999999999999999999999999889999999999999999999999999999999998877889999999999987


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHH
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL  174 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~  174 (403)
                      .+++|+|||||||+.+.+...+.++..+.....|+++++|++++.+++....+..|...+++.++|+||+|+..+.|.++
T Consensus        81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l  160 (196)
T PF00448_consen   81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL  160 (196)
T ss_dssp             HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred             hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence            78999999999999999999999999999999999999999999998888888899888999999999999999999999


Q ss_pred             HHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          175 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       175 ~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      ++...++.||.|++.|++++|+++|+|+.++++++|
T Consensus       161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg  196 (196)
T PF00448_consen  161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG  196 (196)
T ss_dssp             HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred             eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence            999999999999999999999999999999999887

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=100.00  E-value=1.5e-32  Score=264.44  Aligned_cols=202  Identities=49%  Similarity=0.773  Sum_probs=185.0

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHH
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK   87 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~   87 (403)
                      +.....++++++++|++|+||||++++||.++++.|++|+++++|++|+++.+|+..+.+..+++++......+|...+.
T Consensus        65 ~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~  144 (272)
T TIGR00064        65 LIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAF  144 (272)
T ss_pred             hcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHH
Confidence            33445678999999999999999999999999999999999999999999999999999999999887766677877777


Q ss_pred             HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC------CceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      +.+..+...+||+|||||||+.+.+..++.++..+.....      |+++++|+|++++++....+..|.+.+++.|+|+
T Consensus       145 ~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il  224 (272)
T TIGR00064       145 DAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL  224 (272)
T ss_pred             HHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence            7777766688999999999999999999999999988877      8999999999999999999999988889999999


Q ss_pred             ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhc
Q 015657          162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL  209 (403)
Q Consensus       162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~l  209 (403)
                      ||+|.+.+.|.++++...++.||.|+++|++++|+++|+|+++++++|
T Consensus       225 TKlDe~~~~G~~l~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll  272 (272)
T TIGR00064       225 TKLDGTAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF  272 (272)
T ss_pred             EccCCCCCccHHHHHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence            999999999999999999999999999999999999999999988865

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=6.7e-34  Score=233.85  Aligned_cols=99  Identities=46%  Similarity=0.805  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCC----Cc-hhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHH
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI----TP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR  315 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~----~~-~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~r  315 (403)
                      +||++||++|++++.||||++++++||||+++.    +. ...+.+++++++|++||+|||++||+||++|+  .||++|
T Consensus         1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~ll~--~sR~~R   78 (104)
T PF02978_consen    1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGNMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKLLN--ESRRRR   78 (104)
T ss_dssp             SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSSS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGGHH--HHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCccccc--hHHHHH
Confidence            599999999999999999999999999999876    22 23456788999999999999999999999995  599999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHH
Q 015657          316 VAQDSGKTEQQVSQLVAQLFQMRVRM  341 (403)
Q Consensus       316 ia~gsg~~~~~v~~l~~~~~~~~~~~  341 (403)
                      ||+|||++++|||+||++|++|++||
T Consensus        79 IA~GSG~~~~eV~~ll~~f~~~~~mm  104 (104)
T PF02978_consen   79 IARGSGTTVQEVNELLKQFKQMKKMM  104 (104)
T ss_dssp             HHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999998886

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=100.00  E-value=6.4e-32  Score=265.04  Aligned_cols=205  Identities=46%  Similarity=0.777  Sum_probs=185.6

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA   86 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~   86 (403)
                      .+.+...++.+++++|++|+||||++.+||.+++..|++|+++++|++|+++.+|+..+....+++++......+|...+
T Consensus       106 ~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v  185 (318)
T PRK10416        106 PLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVA  185 (318)
T ss_pred             cccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHH
Confidence            45555567899999999999999999999999999999999999999999999999888999999988876666777776


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI  160 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI  160 (403)
                      .+.+..+...+||+|||||||+++.+..++.++..+.+.+      .|+++++|+|++++++....+..|.+.+++.|+|
T Consensus       186 ~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giI  265 (318)
T PRK10416        186 FDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGII  265 (318)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEE
Confidence            6777766668999999999999999999999999988754      4789999999999999999999998889999999


Q ss_pred             EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCC
Q 015657          161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM  211 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~  211 (403)
                      +||+|+..++|.++++...++.||.|+++|++++|+++|+|+.++++++|-
T Consensus       266 lTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~  316 (318)
T PRK10416        266 LTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG  316 (318)
T ss_pred             EECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999998863

>PRK14974 cell division protein FtsY; Provisional

Probab=100.00  E-value=5.4e-32  Score=266.48  Aligned_cols=199  Identities=46%  Similarity=0.760  Sum_probs=188.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+|.+|+++|++|+||||++++||.+|...|++|+++++|++|.++.+|+..++...+++++......+|..++.++++
T Consensus       137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~  216 (336)
T PRK14974        137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE  216 (336)
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999887767788888888888


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG  171 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~  171 (403)
                      .++..+||+|||||+|+++.+..++.+|..+...+.|+.+++|+|+.+++++.++++.|...+++.|+|+||+|.+.++|
T Consensus       217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGG  296 (336)
T ss_pred             HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCcc
Confidence            88778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          172 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       172 ~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      .++++...++.||.|+++|++++|+++|+|+.++++++|
T Consensus       297 ~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg  335 (336)
T PRK14974        297 AALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG  335 (336)
T ss_pred             HHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence            999999999999999999999999999999999999886

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.96  E-value=2e-27  Score=235.03  Aligned_cols=194  Identities=25%  Similarity=0.383  Sum_probs=172.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+|++|+++|++||||||++++||..|..+|++|+++++|++|.++++|+..+++..+++++...   ++.. +.+++..
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~-L~~aL~~  314 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTY  314 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHH-HHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999988653   3444 3467777


Q ss_pred             HHh-CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           93 AKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        93 ~~~-~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      +.. .+||+|||||||+.+.+...+.++..+.....|+.++||++++ ..++...+++.|.. +++.++|+||+|.+.++
T Consensus       315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~  393 (436)
T PRK11889        315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASS  393 (436)
T ss_pred             HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCc
Confidence            653 3699999999999998889999999998888899999999995 45677888889986 89999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCC
Q 015657          171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM  211 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~  211 (403)
                      |.++++...+++||.|++.|+++ +|+....++.++.+++|-
T Consensus       394 G~iLni~~~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~  435 (436)
T PRK11889        394 GELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT  435 (436)
T ss_pred             cHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence            99999999999999999999998 689999998898888774

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.95  E-value=4.8e-27  Score=231.70  Aligned_cols=195  Identities=25%  Similarity=0.408  Sum_probs=170.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .++++++++|++||||||++++||.++..+|++|.+|++|+||+++.+|+..+++..+++++..   .+|.+ +.+++..
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~d-L~~al~~  279 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAE-LEEAVQY  279 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHH-HHHHHHH
Confidence            4679999999999999999999999998999999999999999999999999999999998754   24554 4666776


Q ss_pred             HH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec-ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           93 AK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTGQEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        93 ~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda-~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      +. ..+||+|||||||+.+.+...+.++..+...+.|+.+++|+++ ...++....+..|. .+++.|+|+||+|.+.++
T Consensus       280 l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~  358 (407)
T PRK12726        280 MTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRI  358 (407)
T ss_pred             HHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCc
Confidence            64 2579999999999999999999999999988888998999998 44467777666665 688999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCcC-CCCCCCchhhhhhhcCCc
Q 015657          171 GAALSVKEVSGKPIKLVGRGERME-DLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v~-~l~~f~~~~~~~r~lG~~  212 (403)
                      |.++++...++.||.|+++|++++ ++..++++.++.+++|-+
T Consensus       359 G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~~~  401 (407)
T PRK12726        359 GDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTD  401 (407)
T ss_pred             cHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence            999999999999999999999995 588888888888888754

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.95  E-value=1.4e-26  Score=232.03  Aligned_cols=193  Identities=26%  Similarity=0.355  Sum_probs=164.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh----CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~----~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~   88 (403)
                      ..|++++++|++|+||||++++||+++..    +|++|.+|++|+||.++.+|+..+++..++|+.....   + ..+..
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~-~~l~~  247 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F-KDLKE  247 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H-HHHHH
Confidence            45789999999999999999999999873    5899999999999999999999999999999875532   2 33455


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC-CceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCC
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN-PTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~-~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .+..+  .+||+|||||+|+.+.+...+.++..+..... +.+++||+++++++.... .+..|. .+++.|+|+||+|+
T Consensus       248 ~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDe  324 (388)
T PRK12723        248 EITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDE  324 (388)
T ss_pred             HHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccC
Confidence            55555  68999999999999877666778888777665 458999999987754444 334443 57899999999999


Q ss_pred             CCchhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657          167 DSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       167 ~~~~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~  212 (403)
                      +.++|.++++...++.||.|++.|+++ +|+.+|+|..++++++|+.
T Consensus       325 t~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~  371 (388)
T PRK12723        325 TTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR  371 (388)
T ss_pred             CCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC
Confidence            999999999999999999999999999 8999999999999999985

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.94  E-value=1.2e-25  Score=239.10  Aligned_cols=193  Identities=29%  Similarity=0.436  Sum_probs=170.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCC-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ++++++++|++||||||++.+||.++. .+| ++|.++++|.||.++.+|+..+++..+++++...   ++.+ +.+++.
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~  259 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALA  259 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHH
Confidence            468999999999999999999999885 566 6999999999999999999999999999887543   3544 577777


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhc--CCeeEEEEccCCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIE--IGITGAILTKLDGDS  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~--~~i~GvIlNk~D~~~  168 (403)
                      .+  .++|+|||||||+.+.+..++.++..+.....|++++||+|+++. ++..+++..|...  .++.|+|+||+|++.
T Consensus       260 ~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~  337 (767)
T PRK14723        260 AL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEAT  337 (767)
T ss_pred             Hh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence            76  588999999999999888899999988888889999999999765 4555577888754  378999999999999


Q ss_pred             chhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657          169 RGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       169 ~~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~  212 (403)
                      ++|.++++...+++||.|++.|+++ +|+++|+++.+++++++..
T Consensus       338 ~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~  382 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFATP  382 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhccc
Confidence            9999999999999999999999999 8999999999999999864

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.94  E-value=3e-25  Score=222.17  Aligned_cols=188  Identities=26%  Similarity=0.345  Sum_probs=156.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH-HhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L-~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ++++++++|++||||||++++||..+ ...|++|+++++|+||+++.+++..+++..+++++...       .+......
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~-------~~~~l~~~  294 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK-------DIKKFKET  294 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH-------HHHHHHHH
Confidence            46889999999999999999999866 57799999999999999999999999999999876431       12334444


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc---CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL---NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~---~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      +...+||+|||||||+.+.+...+.++..+....   .+.+++||++++.+++....+..+-..+++.|+|+||+|.+.+
T Consensus       295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~  374 (432)
T PRK12724        295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADF  374 (432)
T ss_pred             HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCC
Confidence            4447899999999999888888888888887765   3568999999988875555544444789999999999999999


Q ss_pred             hhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhh
Q 015657          170 GGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRI  208 (403)
Q Consensus       170 ~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~  208 (403)
                      +|.++++...++.||.|++.|+++ +|++.+.+..+++.+
T Consensus       375 ~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i  414 (432)
T PRK12724        375 LGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECV  414 (432)
T ss_pred             ccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHh
Confidence            999999999999999999999998 678877776655443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.93  E-value=2e-24  Score=207.04  Aligned_cols=193  Identities=25%  Similarity=0.384  Sum_probs=170.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ++.+++++|++|+||||++..|+..+..+|++|.++++|.+|.++.+|+..+.+..+++++...   ++.. +.+++..+
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~-l~~~l~~l  149 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTYF  149 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHH-HHHHHHHH
Confidence            4578999999999999999999999988899999999999999999999888888888887542   3333 45666666


Q ss_pred             Hh-CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh
Q 015657           94 KK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRGG  171 (403)
Q Consensus        94 ~~-~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~  171 (403)
                      .. .++|+|||||||+.+.+...+.++..+.....|+.++||++++ .++++.++++.|.. +++.|+|+||+|...+.|
T Consensus       150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G  228 (270)
T PRK06731        150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSG  228 (270)
T ss_pred             HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCcc
Confidence            42 4799999999999998999999999999988999999999995 56889999999986 899999999999999999


Q ss_pred             HHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCC
Q 015657          172 AALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM  211 (403)
Q Consensus       172 ~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~  211 (403)
                      .++++...++.||.|++.|+++ +|+..++++.++.+++|-
T Consensus       229 ~~l~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~  269 (270)
T PRK06731        229 ELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT  269 (270)
T ss_pred             HHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence            9999999999999999999999 589999998888888763

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.93  E-value=4.4e-24  Score=192.03  Aligned_cols=172  Identities=67%  Similarity=1.027  Sum_probs=153.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      +++++|++|+||||++.+|+..+++.|++|+++++|++++...+++..+....+++++......++.+.+.+.+..+...
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE   81 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            68899999999999999999999999999999999999999988888888888999888766667888877777776667


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHH
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV  176 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~  176 (403)
                      ++|+|||||||....+...+.++..+.....++.+++|+++.+.+++...+..+....++.++|+||+|...+.+.+.++
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~  161 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSI  161 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhh
Confidence            99999999999988788888888888777778999999999877888888888877778999999999999999999999


Q ss_pred             HHHhCCCeEEee
Q 015657          177 KEVSGKPIKLVG  188 (403)
Q Consensus       177 ~~~~g~pi~fig  188 (403)
                      ...++.|+.|+|
T Consensus       162 ~~~~~~p~~~~~  173 (173)
T cd03115         162 RAVTGKPIKFIG  173 (173)
T ss_pred             HHHHCcCeEeeC
Confidence            999999998875

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.92  E-value=4.2e-24  Score=217.51  Aligned_cols=191  Identities=36%  Similarity=0.508  Sum_probs=161.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .++++|+|++||||||++++||.+++  ..|++|.+|++|+||.++.+++..++...+++++....   +. -+...+..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~---~~-~l~~~l~~  296 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD---PK-ELAKALEQ  296 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC---HH-hHHHHHHH
Confidence            56899999999999999999999998  45899999999999999999999999999998876533   22 23344555


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhh-hcCCceEEEEEecccHHHH-HHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR-VLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~-~~~~~~vllVvda~~g~~~-~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      +  .+||+|||||||+.+.+...+.++..+.. ...+..+++|++++..... ...+..|. .+++.++|+||+|.....
T Consensus       297 ~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~  373 (424)
T PRK05703        297 L--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSL  373 (424)
T ss_pred             h--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccc
Confidence            4  47999999999999888888888888777 4456789999999776544 44455565 677889999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657          171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~  212 (403)
                      |.+.++...+++|+.|++.|+++ +|+++|+++.+++++++..
T Consensus       374 G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~  416 (424)
T PRK05703        374 GSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGGF  416 (424)
T ss_pred             cHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence            99999999999999999999997 8999999999999988764

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=99.92  E-value=8.9e-24  Score=208.96  Aligned_cols=192  Identities=36%  Similarity=0.525  Sum_probs=169.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      +.++++++|+.||||||+.++||+.+.  ...++|.+|..|.||-++++|+.++++..++|+.....   | .-+..++.
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~---~-~el~~ai~  277 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYS---P-KELAEAIE  277 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecC---H-HHHHHHHH
Confidence            579999999999999999999999998  45689999999999999999999999999999887633   3 33455566


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+  .+||+|+|||+|+-+.|...+.+|..+.....+..+.||+++++ ..+...++..|. .+++.|+|+||+|.....
T Consensus       278 ~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~  354 (407)
T COG1419         278 AL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSL  354 (407)
T ss_pred             Hh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc-cCCcceeEEEcccccCch
Confidence            66  57899999999999999999999999999998899999999954 466666777775 588999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657          171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~  212 (403)
                      |.+.++...++.||.|+..|.++ +|+....+.-++++++|.-
T Consensus       355 G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~  397 (407)
T COG1419         355 GNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF  397 (407)
T ss_pred             hHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence            99999999999999999999998 6788888888888888765

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.4e-24  Score=214.98  Aligned_cols=188  Identities=35%  Similarity=0.582  Sum_probs=171.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc------CCceEeCCCCCCHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV------GVPVYTAGTEVKPSQI   85 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~------gv~v~~~~~~~~~~~~   85 (403)
                      .++|.+|.++|-.|+||||..+++|+||.+.+++|++..||++|+++++||+.+.+..      -+++|..+-..++..+
T Consensus       375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v  454 (587)
T KOG0781|consen  375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV  454 (587)
T ss_pred             cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence            4689999999999999999999999999999999999999999999999998887765      5777877778889999


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcC-------CeeE
Q 015657           86 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-------GITG  158 (403)
Q Consensus        86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-------~i~G  158 (403)
                      +++++++++.++||+|+|||+|+.+.+..+|.+|..+..+..||-+++|-.|..|.+++..++.|+..+       .|.|
T Consensus       455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~  534 (587)
T KOG0781|consen  455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG  534 (587)
T ss_pred             HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence            999999999999999999999999999999999999999999999999999999999999988887532       4899


Q ss_pred             EEEccCCC-CCchhHHHHHHHHhCCCeEEeeccCCcCCCCCC
Q 015657          159 AILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPF  199 (403)
Q Consensus       159 vIlNk~D~-~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f  199 (403)
                      +|+||+|- +...|++.++.+.++.||.|+|+|....||...
T Consensus       535 ~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l  576 (587)
T KOG0781|consen  535 ILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKL  576 (587)
T ss_pred             EEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhc
Confidence            99999994 467789999999999999999999988886653

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.92  E-value=1.4e-23  Score=214.86  Aligned_cols=192  Identities=32%  Similarity=0.453  Sum_probs=158.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCC-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ++.|++++|++||||||++++||.++. ++| ++|.+|++|+||.++.+++..+++..++++.......   +... .+.
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~---Dl~~-aL~  330 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAA---DLRL-ALS  330 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCch---hHHH-HHH
Confidence            468999999999999999999999885 456 5999999999999999999999999999887553322   2222 233


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCCCCch
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+  .++|+++|||+|+.+.+..+...+..+.....|...+||+|++++..... .++.|. ...+.|+|+||+|...+.
T Consensus       331 ~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-~~~~~g~IlTKlDet~~~  407 (484)
T PRK06995        331 EL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASL  407 (484)
T ss_pred             hc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-cCCCCEEEEeCCCCcccc
Confidence            33  57899999999998877666666655555555778999999977655555 444454 578999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657          171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~  212 (403)
                      |.++++...+++||.|+++|+++ +||+.|+++.+++++++.+
T Consensus       408 G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~  450 (484)
T PRK06995        408 GGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP  450 (484)
T ss_pred             hHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence            99999999999999999999999 9999999999999999875

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.91  E-value=6.1e-23  Score=204.38  Aligned_cols=193  Identities=30%  Similarity=0.405  Sum_probs=162.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCC-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ...+++++|++|+||||++++||..+. +.| .+|.++.+|.+|.++.+++..+++..++++.......+.    ...+.
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l----~~~l~  211 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL----QLALA  211 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH----HHHHH
Confidence            457899999999999999999999876 446 699999999999999999999999999998876544332    33444


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH-HHHHHHhhhcC--------CeeEEEEc
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEI--------GITGAILT  162 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~-~~~~~~~~~~~--------~i~GvIlN  162 (403)
                      .+  .++|+|||||+|+.+.+..+..++..+.....+..++||++++++.+. ...++.|....        ++.|+|+|
T Consensus       212 ~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~T  289 (374)
T PRK14722        212 EL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILT  289 (374)
T ss_pred             Hh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEe
Confidence            44  578999999999998888888888887666667889999999776554 44667776542        58899999


Q ss_pred             cCCCCCchhHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657          163 KLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       163 k~D~~~~~~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~  212 (403)
                      |+|...+.|.++++...+++||.|+++|+++ +++....++.++++.++..
T Consensus       290 KlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~~  340 (374)
T PRK14722        290 KLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCAP  340 (374)
T ss_pred             ccccCCCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhccc
Confidence            9999999999999999999999999999999 5789988888888877643

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.89  E-value=9.1e-22  Score=201.50  Aligned_cols=190  Identities=33%  Similarity=0.402  Sum_probs=155.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ...+|+|+|++|+||||++.+|+.++..+  |++|.++++|.|+.+..+++..++...++++.....    ...+...+.
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d----~~~L~~aL~  424 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS----AESLLDLLE  424 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc----HHHHHHHHH
Confidence            35789999999999999999999988765  589999999999999999998888888888775422    233445566


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+  .+||+|||||+|....+...+.++..+.... ....++|+++.. ..+....++.|.. .++.|+|+||+|...+.
T Consensus       425 ~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~l  500 (559)
T PRK12727        425 RL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRF  500 (559)
T ss_pred             Hh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccch
Confidence            55  5799999999999887877777776554433 467789999854 4666667777764 57899999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCC
Q 015657          171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM  211 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~  211 (403)
                      |.++++...+++||.|++.|+++ +||+.|++..++++...+
T Consensus       501 G~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l  542 (559)
T PRK12727        501 GSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDL  542 (559)
T ss_pred             hHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHH
Confidence            99999999999999999999999 799999998777765443

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.88  E-value=1.1e-21  Score=198.21  Aligned_cols=192  Identities=27%  Similarity=0.385  Sum_probs=163.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ++.+++++|+.|+||||++++||..+. .. +.+|.++.+|.+|.++.+|+..+++..|+++.....   +.+ +..++.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~---~~d-l~~al~  265 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD---IAD-LQLMLH  265 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC---HHH-HHHHHH
Confidence            467899999999999999999998764 33 478999999999999999999999999999886543   333 234445


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+  .++|+|+|||+|+.+.+..++.++..+.....+..++||+++++. +++...+..|. .+++.|+|+||+|...+.
T Consensus       266 ~l--~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~-~~~~~~~I~TKlDEt~~~  342 (420)
T PRK14721        266 EL--RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASL  342 (420)
T ss_pred             Hh--cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeeeCCCCc
Confidence            54  689999999999998888888898888766667899999999765 45555555554 589999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcCCc
Q 015657          171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG~~  212 (403)
                      |.++++...+++||.|++.|+++ +|++.|+++.+++++++..
T Consensus       343 G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~  385 (420)
T PRK14721        343 GIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFKPS  385 (420)
T ss_pred             cHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence            99999999999999999999999 8999999999999999865

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=99.82  E-value=2.8e-19  Score=177.40  Aligned_cols=293  Identities=20%  Similarity=0.308  Sum_probs=204.0

Q ss_pred             EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ++|.|+ +||||||++..|.++|+++|++|.     +++  |+++|+. .+....|.++.+.+.|....+.++..+.+. 
T Consensus         3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq-----pfKvGPDYIDP~-~H~~atG~~srNLD~~mm~~~~v~~~f~~~-   75 (451)
T COG1797           3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ-----PFKVGPDYIDPG-YHTAATGRPSRNLDSWMMGEEGVRALFARA-   75 (451)
T ss_pred             eEEecCCCCCcHHHHHHHHHHHHHhcCCccc-----ccccCCCccCch-hhhHhhCCccCCCchhhcCHHHHHHHHHHh-
Confidence            678888 999999999999999999999998     554  7777776 356677999999999998889898888877 


Q ss_pred             hCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEec-ccHHHHHHHHH---HhhhcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDA-MTGQEAAALVT---TFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda-~~g~~~~~~~~---~~~~~~~i~GvIlNk~D~~  167 (403)
                      ..+.|+.||++..++...   ..-..+..++++.+. .+|+||+|+ ...+++..+++   .|++.+++.|||+|++.+.
T Consensus        76 ~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgse  154 (451)
T COG1797          76 AADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSE  154 (451)
T ss_pred             cCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCCCH
Confidence            478999999999888753   112456677788887 899999999 45567777765   5678999999999999999


Q ss_pred             CchhHHHHHHHH-hCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHH
Q 015657          168 SRGGAALSVKEV-SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFND  246 (403)
Q Consensus       168 ~~~~~~~~~~~~-~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~ed  246 (403)
                      +|...+..+.+. +++||  +|+.++.++++.  |    +||||+-...+.. .+++      .-+....+.+..+|++.
T Consensus       155 rH~~llr~Ale~~~gv~v--lG~lpr~~~l~l--p----~RHLGLV~a~E~~-~~~~------~~~~~a~~v~~~vDld~  219 (451)
T COG1797         155 RHYELLRDALEEYTGVPV--LGYLPRDDDLEL--P----SRHLGLVPASERL-ELEA------KLEALAEVVEKHVDLDA  219 (451)
T ss_pred             HHHHHHHHHhhhcCCCcE--EEEecCCcccCC--c----ccccccccchhhh-hHHH------HHHHHHHHHHhhCCHHH
Confidence            999999888887 88888  999999888776  6    9999998666543 1222      22334445567899998


Q ss_pred             HHHHHHHHHhcCChhHHHhcCCCCCCCCchhh----hH-----hHHHHHHHHHH------HhCCCHHhhc-CccccccCc
Q 015657          247 FLKQTRTVARMGSMSRVIGMIPGMGKITPAQV----RE-----AEKSLKIMEAM------IEAMTPEERE-KPELLAESP  310 (403)
Q Consensus       247 l~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~----~~-----~~~~~~~~~~~------i~smt~~e~~-~p~~~~~~~  310 (403)
                      +++......   ++.--+.-.|...+-....+    +.     =+..+.-++..      .+.+..+|.- +-+.+    
T Consensus       220 l~~ia~~~~---~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~v----  292 (451)
T COG1797         220 LLEIASSAG---PLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAV----  292 (451)
T ss_pred             HHHHHhccC---CCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEE----
Confidence            887665432   22211122121111000000    00     03455656555      5666666654 22322    


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 015657          311 VRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV  347 (403)
Q Consensus       311 ~r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~~  347 (403)
                            =-|-|..+---.+ |.+-+.|++.++++...
T Consensus       293 ------YlgGGYPElfA~~-L~~n~~~~~~i~~~~~~  322 (451)
T COG1797         293 ------YLGGGYPELFAEE-LSANESMRRAIKAFAAA  322 (451)
T ss_pred             ------EeCCCChHHHHHH-HhhCHHHHHHHHHHHHc
Confidence                  2345555544443 44556677777877653

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=99.73  E-value=5.8e-17  Score=150.65  Aligned_cols=166  Identities=18%  Similarity=0.187  Sum_probs=104.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-----------HHHH--------------hhhccC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVI--------------LGEQVG   70 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-----------~l~~--------------~~~~~g   70 (403)
                      ++|+|.|+|||||||++.+||.+|+++|+||++||+|++......           .+..              .....|
T Consensus         1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T cd02117           1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG   80 (212)
T ss_pred             CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence            468888999999999999999999999999999999998643210           0000              001236


Q ss_pred             CceEeCCCCCCHH-----------HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc
Q 015657           71 VPVYTAGTEVKPS-----------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT  139 (403)
Q Consensus        71 v~v~~~~~~~~~~-----------~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~  139 (403)
                      +++++.+......           ..++ .+..+ .++||||||||+|.+...... ..+.    .-.++.+++|+++..
T Consensus        81 l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l~----~~~ad~vliv~~p~~  153 (212)
T cd02117          81 VKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPIR----EGKADEIYIVTSGEF  153 (212)
T ss_pred             cEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-cccc----cccCcEEEEEecccH
Confidence            6676655432111           1122 33334 468999999998876422111 0000    012478888888732


Q ss_pred             --H---HHHHHHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeecc
Q 015657          140 --G---QEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG  190 (403)
Q Consensus       140 --g---~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~g  190 (403)
                        .   ....+.++.+..  ...+.|+|+|+++...+...+.++.+.++.|+  ++..
T Consensus       154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~v--l~~I  209 (212)
T cd02117         154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQV--IHFV  209 (212)
T ss_pred             HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCE--EEec
Confidence              1   223333444433  55678999999997655556677888888887  5444

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=99.72  E-value=9.2e-17  Score=154.97  Aligned_cols=169  Identities=18%  Similarity=0.173  Sum_probs=101.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHh------------hhccCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL------------GEQVGV   71 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~------------~~~~gv   71 (403)
                      ++|+|+|+|||||||++.+||..|+++|+||++||+|++.+....-            +...            ....|+
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~~~i   81 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDI   81 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCCCCe
Confidence            5677779999999999999999999999999999999987543211            1000            001245


Q ss_pred             ceEeCCCCCC------H----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657           72 PVYTAGTEVK------P----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT  139 (403)
Q Consensus        72 ~v~~~~~~~~------~----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~  139 (403)
                      .+++.+....      .    ...+.+.+..+ +.+||||||||+|.+..+. +...+    ....++.+++|+.+  ..
T Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~-~~~~~----al~aad~vlip~~p~~~s  155 (273)
T PRK13232         82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGG-FAMPI----REGKAKEIYIVASGELMA  155 (273)
T ss_pred             EEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECC-Eeccc----cccccceEEEecCchHHH
Confidence            5555432100      0    01244555555 3679999999988764221 11000    01124788888876  22


Q ss_pred             HHHHHHH---HHHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          140 GQEAAAL---VTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       140 g~~~~~~---~~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      ...+...   +..+ +..+.+.|+|+|+.+..........+.+.++.++  .+..+.
T Consensus       156 l~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip~  210 (273)
T PRK13232        156 IYAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQL--IHFVPR  210 (273)
T ss_pred             HHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHHHHHHHHHHhCCCe--EEECCC
Confidence            2333333   3322 3456788999998864433445566777777665  444443

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=99.72  E-value=5e-16  Score=139.20  Aligned_cols=151  Identities=21%  Similarity=0.272  Sum_probs=97.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      .+.+++||+||||++.+||.++++.|++|++||+|++++.....+.               .......++..+..+...+
T Consensus         3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~   67 (169)
T cd02037           3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR---------------GPMKMGAIKQFLTDVDWGE   67 (169)
T ss_pred             EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh---------------CcchHHHHHHHHHHhhcCC
Confidence            3445779999999999999999999999999999999986532110               0112334555555554468


Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHHHHhh-hcCCeeEEEEccCCCC----Cc-
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALVTTFN-IEIGITGAILTKLDGD----SR-  169 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~----~~-  169 (403)
                      ||+||||||+.+..  ...    .+......+.+++|+.+.  ...++....+.+. ...++.|+|+|+++..    .. 
T Consensus        68 yD~VIiD~pp~~~~--~~~----~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~  141 (169)
T cd02037          68 LDYLVIDMPPGTGD--EHL----TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKK  141 (169)
T ss_pred             CCEEEEeCCCCCcH--HHH----HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCc
Confidence            99999999998642  111    111112348888888773  3334444444333 3567889999999752    11 


Q ss_pred             -----hhHHHHHHHHhCCCeEEeeccC
Q 015657          170 -----GGAALSVKEVSGKPIKLVGRGE  191 (403)
Q Consensus       170 -----~~~~~~~~~~~g~pi~fig~ge  191 (403)
                           ......+.+.++.|+  ++..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~--~~~ip  166 (169)
T cd02037         142 IYIFGKGGGEKLAEELGVPL--LGKIP  166 (169)
T ss_pred             ccccCCccHHHHHHHcCCCE--EEecc
Confidence                 124455666677766  66554

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=99.71  E-value=2.2e-16  Score=152.36  Aligned_cols=171  Identities=18%  Similarity=0.155  Sum_probs=98.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHH-----------hhhccCCc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI-----------LGEQVGVP   72 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~-----------~~~~~gv~   72 (403)
                      ++|+|+|+|||||||+|.+||..|+++|+||++||+|++.....            +-+..           .....|+.
T Consensus         2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~l~   81 (274)
T PRK13235          2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGGTR   81 (274)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCCCE
Confidence            57888899999999999999999999999999999999864321            11110           00123555


Q ss_pred             eEeCCCCCC------HHHHHH-HHHHHHH----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--c
Q 015657           73 VYTAGTEVK------PSQIAK-QGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--T  139 (403)
Q Consensus        73 v~~~~~~~~------~~~~~~-~~l~~~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~  139 (403)
                      +++++....      ....++ ..++.+.    .++||||||||+|.+..+. +.    .......++.+++++.+.  .
T Consensus        82 ~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~-l~----~~~a~~aad~vlIp~~~e~~s  156 (274)
T PRK13235         82 CTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGG-FA----MPIRDGKAEEIYIVCSGEMMA  156 (274)
T ss_pred             EEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCC-cc----cccccccccEEEEEecCchhH
Confidence            665431111      111111 2333331    2579999999987653211 11    000001247888888762  2


Q ss_pred             HHH---HHHHHHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657          140 GQE---AAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       140 g~~---~~~~~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                      ...   ..+.++..  +..+.+.|+|+|+............+.+.++.++  ++..+..
T Consensus       157 l~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~~~e~~~~l~~~~~~~l--l~~Ip~~  213 (274)
T PRK13235        157 MYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKIGTQM--IHFVPRD  213 (274)
T ss_pred             HHHHHHHHHHHHHHhhcCCCceeEEEEecCCCCchHHHHHHHHHHcCCce--EEeCCCC
Confidence            222   22222333  3456778999997653333445566667777665  4544443

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.69  E-value=7.2e-16  Score=154.73  Aligned_cols=171  Identities=19%  Similarity=0.227  Sum_probs=103.4

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc----cCCceEe---CCC--------
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ----VGVPVYT---AGT--------   78 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~----~gv~v~~---~~~--------   78 (403)
                      .++|+|+ |+||+||||+|.+||..|++.|+||++||+|+++|.....+......    .+..+.+   .+.        
T Consensus       107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~l  186 (369)
T PRK11670        107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGYL  186 (369)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHHh
Confidence            3677665 88999999999999999999999999999999998764322100000    0111111   000        


Q ss_pred             ----------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHH
Q 015657           79 ----------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAAL  146 (403)
Q Consensus        79 ----------~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~  146 (403)
                                .......+++.+....++.||||||||||++.... +     .+...+..+.+++|+.+.  ...++.+.
T Consensus       187 ~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~-l-----~~~~l~aad~viiV~tp~~~s~~da~~~  260 (369)
T PRK11670        187 VTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQ-L-----TLAQNIPVTGAVVVTTPQDIALIDAKKG  260 (369)
T ss_pred             cCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHH-H-----HHhhhccCCeEEEEecCchhHHHHHHHH
Confidence                      00112334555533335789999999999874211 1     111222347777777662  22344444


Q ss_pred             HHHh-hhcCCeeEEEEccCCCCCc----------hhHHHHHHHHhCCCeEEeeccCCc
Q 015657          147 VTTF-NIEIGITGAILTKLDGDSR----------GGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       147 ~~~~-~~~~~i~GvIlNk~D~~~~----------~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                      +..+ +..+++.|+|+|+++....          .+....+.+.++.|+  ++..+..
T Consensus       261 i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~l--l~~IP~~  316 (369)
T PRK11670        261 IVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQL--LGQMPLH  316 (369)
T ss_pred             HHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcE--EEEeCCC
Confidence            4443 3467889999999874311          123566777788876  5554443

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=99.69  E-value=4.2e-16  Score=150.46  Aligned_cols=163  Identities=16%  Similarity=0.154  Sum_probs=97.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHH------------HHHHh------------hhccC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAID------------QLVIL------------GEQVG   70 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~------------~l~~~------------~~~~g   70 (403)
                      ++|+|+|+|||||||+|.+||+.|++ +|+||++||+|++...+..            -+...            ....|
T Consensus         3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~   82 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD   82 (275)
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCCCC
Confidence            67888899999999999999999997 5999999999999754321            11000            00135


Q ss_pred             CceEeCCCCCC------HHHH----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--
Q 015657           71 VPVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--  138 (403)
Q Consensus        71 v~v~~~~~~~~------~~~~----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--  138 (403)
                      +++++++....      ....    +++.++.+ .++||||||||++.+..+. +...+..    ..++.+++|+.+.  
T Consensus        83 l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~iliD~~~~~~~~a-l~~~~~~----~aad~viIp~~p~~~  156 (275)
T PRK13233         83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAY-TDDLDFVFFDVLGDVVCGG-FAMPIRD----GKAQEVYIVASGEMM  156 (275)
T ss_pred             cEEEECCCCCCCCCCCCcchhHHHHHHHHcCCc-cCCCCEEEEecCCceeecc-ccccchh----ccCceEEEeccccHH
Confidence            66666553221      1112    23444444 3679999999977543211 1100000    1247888888873  


Q ss_pred             cHHHHHHH---HHH--hhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          139 TGQEAAAL---VTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       139 ~g~~~~~~---~~~--~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                      .-..+...   +..  .+..+.+.|+|+|+............+.+.++.++
T Consensus       157 sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~~~~~~e~l~~~~~~~~  207 (275)
T PRK13233        157 AIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQM  207 (275)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCcHHHHHHHHHHHcCCce
Confidence            22222222   221  24567789999998643333345566667777765

>PRK13236 nitrogenase reductase; Reviewed

Probab=99.69  E-value=1e-15  Score=149.48  Aligned_cols=172  Identities=16%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh------------HHHHHH-------------hhh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI-------------LGE   67 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~------------~~~l~~-------------~~~   67 (403)
                      ...+++.+.|+|||||||++.+||..|+++|+||++||+|++.+..            .+-+..             ...
T Consensus         4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~~   83 (296)
T PRK13236          4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLTG   83 (296)
T ss_pred             cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhheeC
Confidence            3569999999999999999999999999999999999999875332            111110             111


Q ss_pred             ccCCceEeCCCCC------CHHHHHHHHHHHHH----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           68 QVGVPVYTAGTEV------KPSQIAKQGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        68 ~~gv~v~~~~~~~------~~~~~~~~~l~~~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      ..|+.+++++...      ......  .++.+.    +.+||||+|||++...... +...+.    ...+|.+++|+.+
T Consensus        84 ~~gv~llpa~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~yD~vliD~~~~~~~~~-~~~~~~----l~aAD~vIIvttp  156 (296)
T PRK13236         84 FRGVKCVESGGPEPGVGCAGRGIIT--AINFLEENGAYQDLDFVSYDVLGDVVCGG-FAMPIR----EGKAQEIYIVTSG  156 (296)
T ss_pred             CCCeEEEECCCCCCCCCCcceeehh--hhHHHHhcCccccCCEEEEeccccceecc-ccccch----hccCCEEEEecCc
Confidence            2467777754211      111111  233332    3689999999976542211 110000    1234788888877


Q ss_pred             --ccHHHHHHH----HHHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657          138 --MTGQEAAAL----VTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       138 --~~g~~~~~~----~~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                        ..-..+.+.    .+.. +..+++.|+|+|+.+..........+.+.++.++  ++..+..
T Consensus       157 e~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~~~~ile~l~~~~g~~v--l~~Ip~~  217 (296)
T PRK13236        157 EMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQM--IHFVPRD  217 (296)
T ss_pred             chHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcchHHHHHHHHHHhCccc--eeeCCCC
Confidence              222222222    1122 4467788999999754433345566777787766  4555443

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=99.68  E-value=6.1e-16  Score=148.41  Aligned_cols=168  Identities=19%  Similarity=0.218  Sum_probs=99.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHHhh------------hccCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVILG------------EQVGV   71 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~~~------------~~~gv   71 (403)
                      ++|+|+|+|||||||+|.+||.+|+++|+||++||+|++.....            +.+....            ...++
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l   81 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGGI   81 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecCCCe
Confidence            56777899999999999999999999999999999999864331            1111000            01355


Q ss_pred             ceEeCCCCCC-----------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-
Q 015657           72 PVYTAGTEVK-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-  139 (403)
Q Consensus        72 ~v~~~~~~~~-----------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-  139 (403)
                      .+++.+....           ....+ +.+..+ ..+||||||||||.+..... ...   + .....|.+++++.+.. 
T Consensus        82 ~~ip~~~~~~~~~~~~~~~~~~~~~l-~~l~~~-~~~yD~viID~~g~~~~~~~-~~~---~-~~~aaD~vlip~~p~~~  154 (270)
T cd02040          82 KCVESGGPEPGVGCAGRGVITAINLL-EELGAY-EDDLDFVIYDVLGDVVCGGF-AMP---I-REGKAQEIYIVTSGEMM  154 (270)
T ss_pred             EEEeCCCCCCCCCCcCcchhhHHHHH-HhcCcc-ccCCCEEEEecccCcccCCc-ccc---c-ccccccEEEEEecCchH
Confidence            6666543221           11111 223333 35799999999886532111 000   0 0112478888887732 


Q ss_pred             -HHH---HHHHHHHhh--hcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          140 -GQE---AAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       140 -g~~---~~~~~~~~~--~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                       -..   ....+..+.  ....+.|||+|+............+.+.++.++  ++..+.
T Consensus       155 sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~~~~~~~~l~~~~g~~v--l~~Ip~  211 (270)
T cd02040         155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQM--IHFVPR  211 (270)
T ss_pred             HHHHHHHHHHHHHHhCccCCCceEEEEEecCCChhHHHHHHHHHHHcCCCe--EeecCC
Confidence             122   222333333  245678899998654333445566777788876  454443

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=99.68  E-value=7.9e-16  Score=145.77  Aligned_cols=164  Identities=23%  Similarity=0.342  Sum_probs=100.2

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHH---------hhhccCCceE
Q 015657           17 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI---------LGEQVGVPVY   74 (403)
Q Consensus        17 iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~---------~~~~~gv~v~   74 (403)
                      +|+++ ++||+||||+|.+||.+|+++|++|++||+|++.+...            ..+..         .....++.++
T Consensus         2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l   81 (251)
T TIGR01969         2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI   81 (251)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence            45555 77999999999999999999999999999999643211            11100         0012345566


Q ss_pred             eCCCCCC-----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHH
Q 015657           75 TAGTEVK-----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV  147 (403)
Q Consensus        75 ~~~~~~~-----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~  147 (403)
                      +.+....     ....+.+.+..+. ..||+||||||+.+..  .....      ....|.+++|+++.  ....+....
T Consensus        82 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~--~~~~~------l~~ad~vliv~~~~~~s~~~~~~~~  152 (251)
T TIGR01969        82 PAGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLER--DAVTA------LAAADELLLVVNPEISSITDALKTK  152 (251)
T ss_pred             eCCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCH--HHHHH------HHhCCeEEEEECCCCchHHHHHHHH
Confidence            6543221     1234566677764 6899999999998753  11111      12348889998873  223333332


Q ss_pred             HHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657          148 TTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE  191 (403)
Q Consensus       148 ~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge  191 (403)
                      ... .....+.++|+|+++..........+.+.++.|+  ++..+
T Consensus       153 ~~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~~~~~--l~~Ip  195 (251)
T TIGR01969       153 IVAEKLGTAILGVVLNRVTRDKTELGREEIETILEVPV--LGVVP  195 (251)
T ss_pred             HHHHhcCCceEEEEEECCCchhhhhHHHHHHHhhCCcE--EEEec
Confidence            211 2345678999999987532222334455577776  44443

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=99.67  E-value=9.8e-16  Score=149.19  Aligned_cols=163  Identities=15%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-----------HHHH--------------hhhccCCc
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVI--------------LGEQVGVP   72 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-----------~l~~--------------~~~~~gv~   72 (403)
                      |+++|+|||||||+|.+||.+|+++|+||++||+|++......           -+..              .....|+.
T Consensus         3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~   82 (290)
T CHL00072          3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD   82 (290)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence            8899999999999999999999999999999999998643210           0100              00013566


Q ss_pred             eEeCCCCCCHHH-------HHHHHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHH
Q 015657           73 VYTAGTEVKPSQ-------IAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQE  142 (403)
Q Consensus        73 v~~~~~~~~~~~-------~~~~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~  142 (403)
                      +++.+......+       .....++.+. .++||||||||++.+.... +...      ...++.+++++++..  -..
T Consensus        83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~a-~~aa------l~~AD~viIp~~p~~~sl~~  155 (290)
T CHL00072         83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCGG-FAAP------LNYADYCIIITDNGFDALFA  155 (290)
T ss_pred             EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceech-hhhh------hhcCCEEEEEecCCHHHHHH
Confidence            666554321111       0111222222 1479999999988753211 1111      123488888888732  223


Q ss_pred             HHHHH---HHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          143 AAALV---TTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       143 ~~~~~---~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      +....   +..  +..+.+.|+|+|+++..   ..+....+.++.|+  ++..+.
T Consensus       156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~---~~~~~~~~~~~~~v--l~~Ip~  205 (290)
T CHL00072        156 ANRIAASVREKARTHPLRLAGLVGNRTSKR---DLIDKYVEACPMPV--LEVLPL  205 (290)
T ss_pred             HHHHHHHHHHHhccCCCceEEEEEeCCCch---hHHHHHHHHcCCce--EEECCC
Confidence            32332   322  23456789999999843   33455666778776  444443

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=99.67  E-value=6.1e-16  Score=151.02  Aligned_cols=172  Identities=19%  Similarity=0.192  Sum_probs=103.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh------------HHHHHH--------h-----hhc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI--------L-----GEQ   68 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~------------~~~l~~--------~-----~~~   68 (403)
                      +.++|+|+|+||+||||++.+||..|++.|+||++||+|++.+..            .+-+..        .     ...
T Consensus         3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   82 (295)
T PRK13234          3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGY   82 (295)
T ss_pred             cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheecC
Confidence            457888889999999999999999999999999999999975333            111100        0     112


Q ss_pred             cCCceEeCCCCCC------HHHHHH-HHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--
Q 015657           69 VGVPVYTAGTEVK------PSQIAK-QGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--  138 (403)
Q Consensus        69 ~gv~v~~~~~~~~------~~~~~~-~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--  138 (403)
                      .|+++++.+....      ....++ ..++.+. .++||||||||++.+..+. +...+    ....++.+++++.+.  
T Consensus        83 ~gl~lipa~~~~~~~~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~na-l~~~~----~~~aAD~vIIPv~pe~~  157 (295)
T PRK13234         83 KGIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGG-FAMPI----RENKAQEIYIVMSGEMM  157 (295)
T ss_pred             CCeEEEECCCCCCCCCCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECC-Ccccc----ccccCceEEEecCccHH
Confidence            4667776542111      122233 3454432 2589999999977643211 11000    001348888888872  


Q ss_pred             cHHHHH---HHHHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          139 TGQEAA---ALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       139 ~g~~~~---~~~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      .-..+.   ..+...  +..+.+.|+|+|+............+.+.++.++  ++..+.
T Consensus       158 Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~~~~~~e~l~e~~g~~l--l~~Ip~  214 (295)
T PRK13234        158 ALYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAARLGSKL--IHFVPR  214 (295)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCchHHHHHHHHHHHhCCce--EEECCC
Confidence            222222   222332  2346788999997654444445566667778766  344443

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=99.66  E-value=2.3e-15  Score=145.71  Aligned_cols=170  Identities=18%  Similarity=0.138  Sum_probs=96.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHH------------hhhccCCc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI------------LGEQVGVP   72 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~------------~~~~~gv~   72 (403)
                      ++|+++|+|||||||+|.+||..|+++|+||++||+|++.....           +-+..            .....|+.
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~~~l~   81 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGFNGIY   81 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCCCCcE
Confidence            57888899999999999999999999999999999999853221           11100            01123566


Q ss_pred             eEeCCCCCC------HHHH----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--H
Q 015657           73 VYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--G  140 (403)
Q Consensus        73 v~~~~~~~~------~~~~----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g  140 (403)
                      +++.+....      ....    ..+.+..+...+||||||||++.+..+...     .......++.+++++.+..  .
T Consensus        82 lipa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~-----~~~~~~aAD~vlIp~~p~~~si  156 (279)
T PRK13230         82 CVESGGPEPGYGCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFA-----MPLQKGLADDVYIVTTCDPMAI  156 (279)
T ss_pred             EEECCCCCCCCCcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCcc-----ccccccccceEEEeccchHHHH
Confidence            666553211      1111    111111222247999999998865321100     0001112488888888732  2


Q ss_pred             HH---HHHHHHHhh--hcCCeeEEEEccCCCCCc-hhHHHHHHHHhCCCeEEeeccCCc
Q 015657          141 QE---AAALVTTFN--IEIGITGAILTKLDGDSR-GGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       141 ~~---~~~~~~~~~--~~~~i~GvIlNk~D~~~~-~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                      ..   +.+.+..+.  ....+.||+.|. ....+ ......+.+.++.++  ++..+..
T Consensus       157 ~~~~~ll~~i~~~~~~~~~~i~gIv~n~-r~~~~~~~~~e~l~~~~g~~v--l~~Ip~~  212 (279)
T PRK13230        157 YAANNICKGIKRFAKRGKSALGGIIYNG-RSVIDAPDIVEEFAKKIGTNV--IGKIPMS  212 (279)
T ss_pred             HHHHHHHHHHHHHhhcCCCcceEEEEec-cCCCchhHHHHHHHHHhCCcE--EEECCCC
Confidence            22   223333332  245667777553 22222 345566777788877  4555443

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=99.65  E-value=4.2e-15  Score=137.15  Aligned_cols=153  Identities=23%  Similarity=0.298  Sum_probs=100.0

Q ss_pred             cccccCCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------H------------
Q 015657            7 ELVFAKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------I------------   64 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------~------------   64 (403)
                      +|.+....+++|+|++. +|+||||++.+||..|++.|++|++||+|++.|.....+.         .            
T Consensus         9 ~l~~~~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i   88 (204)
T TIGR01007         9 NIQFSGAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAI   88 (204)
T ss_pred             HHhhhcCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhc
Confidence            45555566888888855 9999999999999999999999999999998875422110         0            


Q ss_pred             -hhhccCCceEeCCCC-CCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           65 -LGEQVGVPVYTAGTE-VKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        65 -~~~~~gv~v~~~~~~-~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                       .....++.+++.+.. ..+.     ..+++.++.++ ..||+||||||+.......     ..+..  .+|.+++|+++
T Consensus        89 ~~~~~~~l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~-----~~~~~--~~D~vilV~~~  160 (204)
T TIGR01007        89 CDTNIENLFVITSGPVPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDA-----AIIAR--ACDASILVTDA  160 (204)
T ss_pred             ccCCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchH-----HHHHH--hCCeEEEEEEC
Confidence             001135556665432 2222     23466777774 7899999999984332111     11111  24899999988


Q ss_pred             c--cHHHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657          138 M--TGQEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus       138 ~--~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .  ....+......+. ....+.|+|+||++..
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~  193 (204)
T TIGR01007       161 GEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS  193 (204)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence            3  3344444433333 2457899999999854

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>TIGR01287 nifH nitrogenase iron protein

Probab=99.65  E-value=3.6e-15  Score=143.94  Aligned_cols=170  Identities=19%  Similarity=0.188  Sum_probs=98.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH------------HHHHHh------------hhccCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVIL------------GEQVGV   71 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~------------~~l~~~------------~~~~gv   71 (403)
                      ++|+++|+|||||||+|.+||..|+++|++|++||+|++...+.            +-+...            ....++
T Consensus         1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l   80 (275)
T TIGR01287         1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGGI   80 (275)
T ss_pred             CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCCE
Confidence            46889999999999999999999999999999999998864331            111100            002255


Q ss_pred             ceEeCCCCCC------HHHH----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--c
Q 015657           72 PVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--T  139 (403)
Q Consensus        72 ~v~~~~~~~~------~~~~----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~  139 (403)
                      .+++.+....      ....    +.+.+..+. ++||||||||+|.+..... ...   + .....|.+++++.+.  .
T Consensus        81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~~~-~~~---~-~~~aAD~viip~~p~~~s  154 (275)
T TIGR01287        81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCGGF-AMP---I-REGKAQEIYIVTSGEMMA  154 (275)
T ss_pred             EEEeCCCCCccCCCccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceecce-eec---c-ccccccEEEEEecchHHH
Confidence            5555432211      1111    122344443 5899999999876532111 000   0 001247888888772  2


Q ss_pred             HHHH---HHHHHHhh--hcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657          140 GQEA---AALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       140 g~~~---~~~~~~~~--~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                      -..+   ...+..+.  ....+.++|+|+............+.+.++.++  ++..+..
T Consensus       155 l~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~~~~~~e~l~~~~~~~v--l~~Ip~~  211 (275)
T TIGR01287       155 LYAANNICKGILKYAKSGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQL--IHFVPRS  211 (275)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeeeEEEEcCCCCchHHHHHHHHHHHhCCce--EEECCCC
Confidence            2222   22223332  245677888887543333444566667777765  4444443

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=99.65  E-value=5e-15  Score=142.52  Aligned_cols=160  Identities=21%  Similarity=0.241  Sum_probs=96.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHH--------------hhhcc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI--------------LGEQV   69 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~--------------~~~~~   69 (403)
                      .++|+|+|+|||||||+|.+||.+|+++|+||++||+|++...+.           +-+..              .....
T Consensus         2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~   81 (270)
T PRK13185          2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYN   81 (270)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCC
Confidence            478888899999999999999999999999999999999853321           11100              00114


Q ss_pred             CCceEeCCCCCCH-------HHHHHHHHHHH-HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--
Q 015657           70 GVPVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--  139 (403)
Q Consensus        70 gv~v~~~~~~~~~-------~~~~~~~l~~~-~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--  139 (403)
                      |+++++.+.....       .......+..+ ..++||||||||+|.+..+. +...      ...+|.+++++.+..  
T Consensus        82 ~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~-~~~~------l~~AD~viip~~~~~~s  154 (270)
T PRK13185         82 GVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG-FAAP------LQYADYALIVTANDFDS  154 (270)
T ss_pred             CcEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc-ccch------hhhCcEEEEEecCchhh
Confidence            6677765443211       01111122221 13579999999988764321 1111      112478888887622  


Q ss_pred             H---HHHHHHHHH--hhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          140 G---QEAAALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       140 g---~~~~~~~~~--~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                      -   ......+..  .+..+.+.|+|+|+++.   ...+..+.+.++.++
T Consensus       155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~---~~~~~~~~~~~g~~v  201 (270)
T PRK13185        155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG---TDLIDKFNEAVGLKV  201 (270)
T ss_pred             HHHHHHHHHHHHhhhhccCCCceEEEEeccCh---HHHHHHHHHHcCCCE
Confidence            1   222332222  24456678999999873   233456666777777

>PHA02518 ParA-like protein; Provisional

Probab=99.64  E-value=9.9e-15  Score=134.64  Aligned_cols=153  Identities=21%  Similarity=0.199  Sum_probs=92.4

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      +|+++ .+|||||||+|.+||.+|+++|++|++||+|++++...+ .... .. +.++++....   ...+.+.+..+. 
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~~-~~-~~~~i~~~~~---~~~~~~~l~~~~-   74 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEAR-EE-GEPLIPVVRM---GKSIRADLPKVA-   74 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHhc-cc-CCCCCchhhc---cHHHHHHHHHHh-
Confidence            56666 559999999999999999999999999999999876632 2111 11 1111211111   123445555553 


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH---HHHHHHHH---hhhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ---EAAALVTT---FNIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~---~~~~~~~~---~~~~~~i~GvIlNk~D~~  167 (403)
                      ..||+|||||||....  . ..   .+  ....|.+++++.+..  ..   .....+..   ++......++|+|+++..
T Consensus        75 ~~~d~viiD~p~~~~~--~-~~---~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~  146 (211)
T PHA02518         75 SGYDYVVVDGAPQDSE--L-AR---AA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN  146 (211)
T ss_pred             ccCCEEEEeCCCCccH--H-HH---HH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence            6899999999998642  1 11   11  112478888887732  12   22222222   333556678999998654


Q ss_pred             Cc-hhHHHHHHHHhCCCe
Q 015657          168 SR-GGAALSVKEVSGKPI  184 (403)
Q Consensus       168 ~~-~~~~~~~~~~~g~pi  184 (403)
                      .. ...+....+..+.|+
T Consensus       147 ~~~~~~~~~~l~~~~~~~  164 (211)
T PHA02518        147 TQLYREARKALAGYGLPI  164 (211)
T ss_pred             chHHHHHHHHHHHcCchh
Confidence            32 234444445556665

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=99.62  E-value=1.9e-14  Score=129.98  Aligned_cols=158  Identities=22%  Similarity=0.292  Sum_probs=91.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceE--eCCCCCCH---------HHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY--TAGTEVKP---------SQI   85 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~--~~~~~~~~---------~~~   85 (403)
                      +.+.+++||+||||+|.+||..|    ++|++||+|+++|.....+. .....+..+.  ........         ...
T Consensus         2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (179)
T cd03110           2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLK-PEIEEEEDFIVGGKKAVIDPELCISCGLCGKL   76 (179)
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcC-CCccccccceecCCceEEchhhhccccchHHH
Confidence            45667889999999999999999    79999999999887643221 1111111111  00000000         111


Q ss_pred             HHHHHHH----HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHHHHhhh-cCCeeE
Q 015657           86 AKQGLEE----AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALVTTFNI-EIGITG  158 (403)
Q Consensus        86 ~~~~l~~----~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~~~~~~-~~~i~G  158 (403)
                      .....+.    .....||||||||||+...  ...    ..  ....|.+++|+.+.  ....+....+.+.. ..+ .+
T Consensus        77 ~~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~----~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~  147 (179)
T cd03110          77 VTEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVI----AS--LTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VG  147 (179)
T ss_pred             HHHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHH----HH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EE
Confidence            1111111    1137899999999998742  111    11  12347888888873  22333333333322 233 47


Q ss_pred             EEEccCCCCCc-hhHHHHHHHHhCCCeEEeecc
Q 015657          159 AILTKLDGDSR-GGAALSVKEVSGKPIKLVGRG  190 (403)
Q Consensus       159 vIlNk~D~~~~-~~~~~~~~~~~g~pi~fig~g  190 (403)
                      +|+||+|.... ...+.+..+.+|.|+  ++..
T Consensus       148 vV~N~~~~~~~~~~~~~~~~~~~~~~v--l~~i  178 (179)
T cd03110         148 VVINKYDLNDEIAEEIEDYCEEEGIPI--LGKI  178 (179)
T ss_pred             EEEeCCCCCcchHHHHHHHHHHcCCCe--EEeC
Confidence            99999997543 234556677788887  5543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=99.62  E-value=1.1e-14  Score=139.90  Aligned_cols=164  Identities=23%  Similarity=0.235  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-----------HHHHHH--------------hhhccCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGEQVGV   71 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-----------~~~l~~--------------~~~~~gv   71 (403)
                      +|+++|+|||||||+|.+||.+|+++|+||++||+|++....           .+-+..              .....++
T Consensus         2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l   81 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV   81 (267)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence            577889999999999999999999999999999999875321           111100              0011356


Q ss_pred             ceEeCCCCCCHH-------HHHHHHHHHH-HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657           72 PVYTAGTEVKPS-------QIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ  141 (403)
Q Consensus        72 ~v~~~~~~~~~~-------~~~~~~l~~~-~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~  141 (403)
                      ++++++......       ......++.+ ...+||+|||||+|.+.... +...      ...+|.+++++.+..  -.
T Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~~~a------l~~aD~vlip~~p~~~~l~  154 (267)
T cd02032          82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-FAAP------LNYADYALIVTDNDFDSIF  154 (267)
T ss_pred             EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-chhh------hhhcCEEEEEecCCcccHH
Confidence            677554322110       0001112221 13479999999998764321 1111      122488888887732  12


Q ss_pred             H---HHHHHHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          142 E---AAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       142 ~---~~~~~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      .   ....++..  +..+.+.|+|+|+++..   ..+..+.+.++.|+  ++..+.
T Consensus       155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~---~~i~~~~~~~~~~v--l~~Ip~  205 (267)
T cd02032         155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT---DLIDKFVEAVGMPV--LAVLPL  205 (267)
T ss_pred             HHHHHHHHHHHHhhccCCceEEEEEeCCCHH---HHHHHHHHhCCCCE--EEEecC
Confidence            2   22222222  34566789999999853   23455566677776  444444

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=99.62  E-value=1.1e-14  Score=139.94  Aligned_cols=158  Identities=22%  Similarity=0.245  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-----------HHHHHH--------------hhhccCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGEQVGV   71 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-----------~~~l~~--------------~~~~~gv   71 (403)
                      +|++.|+|||||||+|.+||.+|+++|+||++||+|++...+           .+-+..              .....++
T Consensus         2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l   81 (268)
T TIGR01281         2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGGV   81 (268)
T ss_pred             EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCCe
Confidence            467779999999999999999999999999999999985322           011100              0011356


Q ss_pred             ceEeCCCCCCH-------HHHHHHHHHHH-HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657           72 PVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ  141 (403)
Q Consensus        72 ~v~~~~~~~~~-------~~~~~~~l~~~-~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~  141 (403)
                      ++++.+.....       .......+..+ ...+||||||||+|.+...... .      ....+|.+++++.+..  ..
T Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~~-~------~l~aAD~vlip~~~~~~sl~  154 (268)
T TIGR01281        82 DCVEAGGPPAGSGCGGYVVGETVKLLKEHHILDDYDVILFDVLGDVVCGGFA-T------PLQYADYALVVAANDFDALF  154 (268)
T ss_pred             EEEecCCCCCCCcccceehhhhHHHhhhccccccCCEEEEecCCccccCccc-c------chhhcCEEEEEecCchhHHH
Confidence            66655443211       00011112221 1357999999998876421110 0      0122477777776621  12


Q ss_pred             HHHHH---HHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          142 EAAAL---VTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       142 ~~~~~---~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                      .+...   +...  +..+.+.|+|+|+++..   .....+.+.++.|+
T Consensus       155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~---~~~~~~~~~~~~~v  199 (268)
T TIGR01281       155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT---DLIERFNERVGMPV  199 (268)
T ss_pred             HHHHHHHHHHHHhhcCCCceEEEEEeCCChH---HHHHHHHHHcCCCE
Confidence            22222   2222  34567789999999865   34455566678777

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>CHL00175 minD septum-site determining protein; Validated

Probab=99.62  E-value=1.7e-14  Score=139.63  Aligned_cols=170  Identities=16%  Similarity=0.246  Sum_probs=102.7

Q ss_pred             CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH-----------Hh-------------hhc
Q 015657           14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------IL-------------GEQ   68 (403)
Q Consensus        14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~-----------~~-------------~~~   68 (403)
                      ..++|+|+ |+||+||||+|.+||.+|++.|++|++||+|++.+.....+.           .+             ...
T Consensus        14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~   93 (281)
T CHL00175         14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRW   93 (281)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCC
Confidence            35677776 579999999999999999999999999999997533211100           00             001


Q ss_pred             cCCceEeCCCCCC----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHH
Q 015657           69 VGVPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQE  142 (403)
Q Consensus        69 ~gv~v~~~~~~~~----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~  142 (403)
                      .++.+++.+....    ....+.+.++.++...||+||||||+.+..  .....+      ...+.+++|+++.  ....
T Consensus        94 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~--~~~~~l------~~aD~viiV~~p~~~si~~  165 (281)
T CHL00175         94 KNLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDV--GFINAI------APAQEAIVVTTPEITAIRD  165 (281)
T ss_pred             CCeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCH--HHHHHH------HhcCeeEEEcCCChHHHHH
Confidence            2344444432211    122356667777533899999999998742  111111      1247888888873  2234


Q ss_pred             HHHHHHHhhh-cCCeeEEEEccCCCCCch----hHHHHHHHHhCCCeEEeeccCCc
Q 015657          143 AAALVTTFNI-EIGITGAILTKLDGDSRG----GAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       143 ~~~~~~~~~~-~~~i~GvIlNk~D~~~~~----~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                      +....+.+.. .....++|+|+++.....    -....+.+.++.|+  ++..+..
T Consensus       166 ~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~Ip~d  219 (281)
T CHL00175        166 ADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPL--LGAIPED  219 (281)
T ss_pred             HHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCe--EEEccCC
Confidence            4444433332 233467999999854211    12345667788877  5555443

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=99.61  E-value=1.9e-14  Score=136.13  Aligned_cols=161  Identities=19%  Similarity=0.168  Sum_probs=93.7

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHH------H--HhhhccCCce
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQL------V--ILGEQVGVPV   73 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l------~--~~~~~~gv~v   73 (403)
                      ++|+|+ ++||+||||+|.+||..|+++|+||++||+|++.+...             +.+      .  ......++.+
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~   81 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF   81 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence            456665 57999999999999999999999999999999875221             000      0  0011235556


Q ss_pred             EeCCCCCC---------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-H-HH
Q 015657           74 YTAGTEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QE  142 (403)
Q Consensus        74 ~~~~~~~~---------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g-~~  142 (403)
                      ++.+....         ....+++.+..+....||+|||||||.+..   ...   .+  ....|.+++++.+.. . ..
T Consensus        82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~---~~~---~~--l~~ad~vii~~~~~~~s~~~  153 (246)
T TIGR03371        82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSP---ITR---QA--LAAADLVLVVVNADAACYAT  153 (246)
T ss_pred             ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchH---HHH---HH--HHhCCeEEEEeCCCHHHHHH
Confidence            65433211         123345666666444469999999997642   111   11  122478888887732 1 22


Q ss_pred             HHHHHHHhhh---cCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCe
Q 015657          143 AAALVTTFNI---EIGITGAILTKLDGDSR--GGAALSVKEVSGKPI  184 (403)
Q Consensus       143 ~~~~~~~~~~---~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi  184 (403)
                      +.+.+..+..   .....++|+|+++....  ......+.+.++.++
T Consensus       154 ~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~~~~~~~~~  200 (246)
T TIGR03371       154 LHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVLRQTLGSRL  200 (246)
T ss_pred             HHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHHHHHhcccc
Confidence            2212222221   11236799999986532  122233445567664

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=99.61  E-value=1.1e-14  Score=134.36  Aligned_cols=167  Identities=22%  Similarity=0.264  Sum_probs=105.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHH----------------HHh--------------
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQL----------------VIL--------------   65 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l----------------~~~--------------   65 (403)
                      .|+|+|+|||||||+|+.|+..|.++ |++|++||+|+ .+....++                +..              
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk   80 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK   80 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence            58999999999999999978877766 59999999997 32221111                100              


Q ss_pred             -------------hhccCCceEeCCC--------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCc-cccHHhHHHHHHHh
Q 015657           66 -------------GEQVGVPVYTAGT--------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL-QIDKAMMDELKDVK  123 (403)
Q Consensus        66 -------------~~~~gv~v~~~~~--------~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l-~~d~~l~~el~~i~  123 (403)
                                   .+..++.+...+.        ......++++.++++..+.||+|||||-.++ |+......      
T Consensus        81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~------  154 (255)
T COG3640          81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIE------  154 (255)
T ss_pred             cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccccc------
Confidence                         0111122222221        1222345688889988777999999996554 34333332      


Q ss_pred             hhcCCceEEEEEeccc-HHHHHHHHHHhhhc--CCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC
Q 015657          124 RVLNPTEVLLVVDAMT-GQEAAALVTTFNIE--IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE  197 (403)
Q Consensus       124 ~~~~~~~vllVvda~~-g~~~~~~~~~~~~~--~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~  197 (403)
                         ..|-+++|+|++. +-.....++.+...  ++..++|+||++..  ...+.......+.++  +|..|..+.+.
T Consensus       155 ---~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~v--lg~iP~d~~v~  224 (255)
T COG3640         155 ---GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEV--LGVIPYDPEVV  224 (255)
T ss_pred             ---CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeE--EEEccCCHHHH
Confidence               2488899999943 22333333333333  45678999999976  444555566677777  77776655433

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.61  E-value=2.9e-14  Score=147.01  Aligned_cols=215  Identities=23%  Similarity=0.316  Sum_probs=139.5

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      +.++|+|. +||||||+++.|+++|+++|++|..+.+.+..   .+.. .+....+.+....+.+....+.+++.+..+.
T Consensus         4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~---~d~~-~~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~   79 (451)
T PRK01077          4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDY---IDPA-YHTAATGRPSRNLDSWMMGEELVRALFARAA   79 (451)
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCc---ccHH-HHHHHhCCCcccCCceeCCHHHHHHHHHHhc
Confidence            45788887 99999999999999999999999999886443   2221 1122334444444433334456677777763


Q ss_pred             hCCCcEEEEeCCCCccccHH---hHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHH---HHhhhcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKA---MMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~---l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~---~~~~~~~~i~GvIlNk~D~~  167 (403)
                       .+||++||+++|++.....   -.....++++.+. .++++|+|+.. +......+   ..+...+++.|+|+|++...
T Consensus        80 -~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v~~~  157 (451)
T PRK01077         80 -QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRVGSE  157 (451)
T ss_pred             -ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCh
Confidence             6899999999988754211   0122345666666 79999999854 33333333   33455788999999999765


Q ss_pred             CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHH
Q 015657          168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF  247 (403)
Q Consensus       168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl  247 (403)
                      .+........+.++.|+  +|..|..+.+..  |    +|+||+....+. +...+.+      +....+++..++++.+
T Consensus       158 ~~~~~l~~~l~~~gipv--LG~IP~~~~l~~--p----~r~lgl~~~~e~-~~~~~~~------~~~~~~~~~~~~~~~~  222 (451)
T PRK01077        158 RHYQLLREALERCGIPV--LGALPRDAALAL--P----ERHLGLVQASEH-GDLEARL------DALADLVEEHVDLDAL  222 (451)
T ss_pred             hHHHHHHHHHHhcCCCE--EEEeeCCcccCC--C----ccccCCCCcccc-ccHHHHH------HHHHHHHHHcCCHHHH
Confidence            55444455555678888  888888777654  5    889999765542 1122111      2233344667888776


Q ss_pred             HHHH
Q 015657          248 LKQT  251 (403)
Q Consensus       248 ~~ql  251 (403)
                      ++..
T Consensus       223 ~~~~  226 (451)
T PRK01077        223 LALA  226 (451)
T ss_pred             HHHH
Confidence            5543

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=99.60  E-value=2.6e-14  Score=137.88  Aligned_cols=143  Identities=20%  Similarity=0.321  Sum_probs=97.5

Q ss_pred             CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH------------------H---hhhcc
Q 015657           12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV------------------I---LGEQV   69 (403)
Q Consensus        12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~------------------~---~~~~~   69 (403)
                      .+++++|+|++. +|+||||++.+||..|++.|++|++||+|+.+|.....+.                  .   .....
T Consensus       100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~  179 (274)
T TIGR03029       100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALE  179 (274)
T ss_pred             CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCC
Confidence            456788888855 9999999999999999999999999999988766422110                  0   01123


Q ss_pred             CCceEeCCCCC-CHHH-----HHHHHHHHHHhCCCcEEEEeCCCCccc-cHHhHHHHHHHhhhcCCceEEEEEec--ccH
Q 015657           70 GVPVYTAGTEV-KPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA--MTG  140 (403)
Q Consensus        70 gv~v~~~~~~~-~~~~-----~~~~~l~~~~~~~~D~VIIDtpg~l~~-d~~l~~el~~i~~~~~~~~vllVvda--~~g  140 (403)
                      ++.+++.+... .+.+     .+...+..++ ..|||||||||+.... +...+      ..  ..|.+++|+.+  +..
T Consensus       180 ~l~~lp~g~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~------~~--~~d~vilV~~~~~t~~  250 (274)
T TIGR03029       180 NLSVLPAGAIPPNPQELLARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIV------AT--RARGTLIVSRVNETRL  250 (274)
T ss_pred             CEEEEeCcCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHH------HH--hCCeEEEEEECCCCCH
Confidence            56666665432 2322     3466677774 7899999999997643 22221      11  24889999987  344


Q ss_pred             HHHHHHHHHhh-hcCCeeEEEEcc
Q 015657          141 QEAAALVTTFN-IEIGITGAILTK  163 (403)
Q Consensus       141 ~~~~~~~~~~~-~~~~i~GvIlNk  163 (403)
                      .++...++.+. ...++.|+|+|+
T Consensus       251 ~~~~~~~~~l~~~~~~~~G~VlN~  274 (274)
T TIGR03029       251 HELTSLKEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCC
Confidence            45555555443 367889999996

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=99.60  E-value=6.6e-14  Score=131.97  Aligned_cols=141  Identities=17%  Similarity=0.103  Sum_probs=83.6

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ++|++. .+|||||||++.+||.+|+++|++|++||+|++++...+ ..........+.............++..++.+.
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   80 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-KENALRSNTWDPACEVYAADELPLLEAAYEDAE   80 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH-HHhhccccCCCccceecCCCHHHHHHHHHHHHh
Confidence            466666 559999999999999999999999999999999986532 211111110111000011123345666666665


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHH---HH----hhhcCCeeEEEEccCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALV---TT----FNIEIGITGAILTKLD  165 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~---~~----~~~~~~i~GvIlNk~D  165 (403)
                      ..+||||||||||....  ...    ..  ....|-+++.+.+..  ...+.+.+   ..    .+..++. .+++|+++
T Consensus        81 ~~~yD~iiID~pp~~~~--~~~----~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~-~iv~~~~~  151 (231)
T PRK13849         81 LQGFDYALADTHGGSSE--LNN----TI--IASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AILRQRVP  151 (231)
T ss_pred             hCCCCEEEEeCCCCccH--HHH----HH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEecc
Confidence            46899999999998742  111    11  112366666666522  12222222   21    2333433 49999997


Q ss_pred             C
Q 015657          166 G  166 (403)
Q Consensus       166 ~  166 (403)
                      .
T Consensus       152 ~  152 (231)
T PRK13849        152 V  152 (231)
T ss_pred             c
Confidence            3

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=99.60  E-value=1.6e-14  Score=138.53  Aligned_cols=202  Identities=16%  Similarity=0.123  Sum_probs=108.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-----------HHHHh----------hhccCCce
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVIL----------GEQVGVPV   73 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-----------~l~~~----------~~~~gv~v   73 (403)
                      +++|+++|+||+||||+|.+||.+|+++| ||++||+|++...+..           .+...          ....++.+
T Consensus         2 ~~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (264)
T PRK13231          2 MKKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGILC   80 (264)
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeEE
Confidence            46788889999999999999999999999 9999999998633210           01000          00123445


Q ss_pred             EeCCCCC------CHHH----HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHH
Q 015657           74 YTAGTEV------KPSQ----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQ  141 (403)
Q Consensus        74 ~~~~~~~------~~~~----~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~  141 (403)
                      ++.+...      ....    .+.+.+..+ .++||||||||++.+..+. +...+.    ....|.+++++.+.  ...
T Consensus        81 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~-~~~~~~----~~aaD~vlip~~p~~~si~  154 (264)
T PRK13231         81 VESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGG-FSVPLR----EDYADEVYIVTSGEYMSLY  154 (264)
T ss_pred             EEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEcc-cccccc----ccccceeEEEecCchhHHH
Confidence            4443211      0110    123344444 3689999999988663211 100000    01347888888772  222


Q ss_pred             HHHHHHHHhhh-cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCC--chhhhhhhcCCccHHHHH
Q 015657          142 EAAALVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFY--PDRMAGRILGMGDVLSFV  218 (403)
Q Consensus       142 ~~~~~~~~~~~-~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~--~~~~~~r~lG~~dv~~l~  218 (403)
                      .+....+.+.. ...+.++|.|+.+..........+.+.++.++  ++..+....+....  ...+.+...+......|.
T Consensus       155 ~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v--l~~I~~~~~v~~a~~~g~~v~~~~~~~~aa~~~~  232 (264)
T PRK13231        155 AANNIARGIKKLKGKLGGIICNCRGIDNEVEIVSEFASRIGSRI--IGVIPRSNLVQESELDAKTVVETFPESEQASVYR  232 (264)
T ss_pred             HHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHHHHHHHhCCCe--EEeCCCCHHHHHHHHcCCceeEeCCCChHHHHHH
Confidence            22222222221 12356788888775544455566777778776  34444332222111  122323333444344555


Q ss_pred             HHHHHHh
Q 015657          219 EKAQEVM  225 (403)
Q Consensus       219 e~~~e~~  225 (403)
                      +.+.+.+
T Consensus       233 ~la~el~  239 (264)
T PRK13231        233 KLANNIM  239 (264)
T ss_pred             HHHHHHH
Confidence            5555544

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=99.60  E-value=8.8e-15  Score=133.25  Aligned_cols=173  Identities=21%  Similarity=0.316  Sum_probs=108.7

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC-----------------------hhhHHHHH-HhhhccC
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----------------------PAAIDQLV-ILGEQVG   70 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r-----------------------p~~~~~l~-~~~~~~g   70 (403)
                      ++|+++ |+||+||||++++|+..|+++|+||++||+|+--                       .....|.. ..-...+
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~n   82 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLEN   82 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCc
Confidence            456555 9999999999999999999999999999999521                       11112211 1112223


Q ss_pred             CceEeCCC----CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHHHHH
Q 015657           71 VPVYTAGT----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEAA  144 (403)
Q Consensus        71 v~v~~~~~----~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~~~~  144 (403)
                      +.++++..    ..-..+.....+++++..+|||||||||.++.....        .....++.+++|+.+  ++-.++-
T Consensus        83 L~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~--------~A~~~Ad~AiVVtnPEvSsVRDsD  154 (272)
T COG2894          83 LFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFK--------NAVYFADEAIVVTNPEVSSVRDSD  154 (272)
T ss_pred             eEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHH--------hhhhccceEEEEcCCCccccccch
Confidence            44444332    122234566777888767999999999998853211        112234888888887  3444444


Q ss_pred             HHHH---Hhh--hcCC---eeEEEEccCCCC--Cchh--HHHHHHHHhCCCeEEeeccCCcCCCCC
Q 015657          145 ALVT---TFN--IEIG---ITGAILTKLDGD--SRGG--AALSVKEVSGKPIKLVGRGERMEDLEP  198 (403)
Q Consensus       145 ~~~~---~~~--~~~~---i~GvIlNk~D~~--~~~~--~~~~~~~~~g~pi~fig~ge~v~~l~~  198 (403)
                      +++-   ...  ...+   ...+++|+++..  .++.  .+..+.+.+..|+  +|..|..+++-.
T Consensus       155 RiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~l--iGiiPed~~Vi~  218 (272)
T COG2894         155 RIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPL--IGVIPEDQDVLR  218 (272)
T ss_pred             hheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCce--EEeecCchhhhe
Confidence            4432   111  1111   256999999854  2332  2356777888888  998888766544

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.59  E-value=3.7e-14  Score=136.31  Aligned_cols=147  Identities=25%  Similarity=0.276  Sum_probs=94.4

Q ss_pred             CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh---------h-----------ccCCc
Q 015657           14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------E-----------QVGVP   72 (403)
Q Consensus        14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~---------~-----------~~gv~   72 (403)
                      ..++|+++ |++|+||||++.+||..+++.|+||+++|+|.++|....-+....         .           ..++.
T Consensus        56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ls  135 (265)
T COG0489          56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLS  135 (265)
T ss_pred             cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEE
Confidence            34555554 889999999999999999999999999999999987654332100         0           00111


Q ss_pred             eEeCCC-CCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec-ccH-HHHH
Q 015657           73 VYTAGT-EVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG-QEAA  144 (403)
Q Consensus        73 v~~~~~-~~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda-~~g-~~~~  144 (403)
                      +..... ...+.     ..+++.+..++|..|||||||||+.......      .+... .++.+++|+.. .+. .++.
T Consensus       136 i~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~------~i~~~-~~~g~viVt~p~~~~~~~v~  208 (265)
T COG0489         136 ILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADA------TVLQR-IPDGVVIVTTPGKTALEDVK  208 (265)
T ss_pred             EEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHH------HHHhc-cCCeEEEEeCCccchHHHHH
Confidence            222211 12222     2357788888877799999999998764211      11111 24677888777 233 3444


Q ss_pred             HHHHHh-hhcCCeeEEEEccCCCC
Q 015657          145 ALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus       145 ~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                      +....+ ....++.|||.|+.+-.
T Consensus       209 ka~~~~~~~~~~vlGvv~Nm~~~~  232 (265)
T COG0489         209 KAIDMLEKAGIPVLGVVENMSYFI  232 (265)
T ss_pred             HHHHHHHhcCCceEEEEecCccCc
Confidence            344333 34667999999988743

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=99.59  E-value=5.4e-14  Score=130.33  Aligned_cols=141  Identities=22%  Similarity=0.355  Sum_probs=92.7

Q ss_pred             CCCEEEEEEc-CCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHH------------HH-------H---hhhc
Q 015657           13 SRPTVILLAG-LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQ------------LV-------I---LGEQ   68 (403)
Q Consensus        13 ~~~~iI~v~G-~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~------------l~-------~---~~~~   68 (403)
                      ...++|+|++ ++|+||||++.+||.+|++ .|++|++||+|++.+.....            +.       .   ....
T Consensus        33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~  112 (207)
T TIGR03018        33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNI  112 (207)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCC
Confidence            3467888885 5999999999999999996 69999999999987543211            10       0   0012


Q ss_pred             cCCceEeCCCCCC-HH-----HHHHHHHHHHHhCCC--cEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--c
Q 015657           69 VGVPVYTAGTEVK-PS-----QIAKQGLEEAKKKNV--DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--M  138 (403)
Q Consensus        69 ~gv~v~~~~~~~~-~~-----~~~~~~l~~~~~~~~--D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~  138 (403)
                      .++.+++.+.... +.     ..+++.+..++ ..|  ||||||||+......     ...+..  .+|.+++|+.+  .
T Consensus       113 ~~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~-----~~~l~~--~aD~viiV~~~~~~  184 (207)
T TIGR03018       113 GRLSLLPAGRRHPNPTELLASQRMRSLLHELA-RRYPDRIIIIDTPPLLVFSE-----ARALAR--LVGQIVLVVEEGRT  184 (207)
T ss_pred             CCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hhCCCCEEEEECCCCcchhH-----HHHHHH--hCCEEEEEEECCCC
Confidence            3455665544322 21     23466777775 456  999999999885321     111211  24889999988  3


Q ss_pred             cHHHHHHHHHHhhhcCCeeEEEEc
Q 015657          139 TGQEAAALVTTFNIEIGITGAILT  162 (403)
Q Consensus       139 ~g~~~~~~~~~~~~~~~i~GvIlN  162 (403)
                      ....+...+..+. ..++.|+|+|
T Consensus       185 ~~~~~~~~~~~l~-~~~~~G~v~N  207 (207)
T TIGR03018       185 TQEAVKEALSALE-SCKVLGVVLN  207 (207)
T ss_pred             CHHHHHHHHHHhc-CCCeEEEEeC
Confidence            3345555555555 7889999998

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=99.59  E-value=1.9e-14  Score=130.66  Aligned_cols=143  Identities=24%  Similarity=0.356  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---hhhc--------cCCceEe--CCCCCCHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGEQ--------VGVPVYT--AGTEVKPS   83 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---~~~~--------~gv~v~~--~~~~~~~~   83 (403)
                      |.+.+++||+||||+|.+||.+|+++|++|+++|+|++.+........   ..+.        ..+....  .+......
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDP   80 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHH
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHH
Confidence            345667799999999999999999999999999999998776322200   0000        0000000  00000233


Q ss_pred             HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHH---HHHhhhcCCeeE
Q 015657           84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAAL---VTTFNIEIGITG  158 (403)
Q Consensus        84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~---~~~~~~~~~i~G  158 (403)
                      ..+++.++.+....||+||||||+.+...      ...+  ...++.+++++++..  ...+...   ++.+....++.+
T Consensus        81 ~~l~~~l~~l~~~~yD~iiiD~~~~~~~~------~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~  152 (195)
T PF01656_consen   81 ELLREILESLIKSDYDYIIIDTPPGLSDP------VRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIG  152 (195)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEEECSSSSHH------HHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEE
T ss_pred             HHHHHHHHHhhhccccceeecccccccHH------HHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEE
Confidence            45677777765556999999999988642      1111  123588888888732  2233333   333333356789


Q ss_pred             EEEccCCCC
Q 015657          159 AILTKLDGD  167 (403)
Q Consensus       159 vIlNk~D~~  167 (403)
                      +|+||++..
T Consensus       153 vv~N~v~~~  161 (195)
T PF01656_consen  153 VVINRVDPG  161 (195)
T ss_dssp             EEEEEETSC
T ss_pred             EEEeeeCCC
Confidence            999999765

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=99.57  E-value=4.4e-14  Score=126.67  Aligned_cols=140  Identities=21%  Similarity=0.329  Sum_probs=87.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      +.++.++||+||||++.+||.+|+++|++|++||+|++.+.....+. ....  .       ...-.       +.+  .
T Consensus         2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~-~~~~--~-------~~~~~-------~~~--~   62 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILG-LENR--V-------VYTLH-------DVL--A   62 (179)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhcc-cccc--C-------Ccchh-------hcc--c
Confidence            34455779999999999999999999999999999998665422210 0000  0       00000       111  1


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHHHHhhh-cCCeeEEEEccCCCCCch--h
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALVTTFNI-EIGITGAILTKLDGDSRG--G  171 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~~~~~~-~~~i~GvIlNk~D~~~~~--~  171 (403)
                      + |+|||||||.....  ...    .  ....+.+++|+++.  ....+...++.+.. .....++|+|+++.....  .
T Consensus        63 ~-d~viiD~p~~~~~~--~~~----~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~  133 (179)
T cd02036          63 G-DYILIDSPAGIERG--FIT----A--IAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGD  133 (179)
T ss_pred             C-CEEEEECCCCCcHH--HHH----H--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhh
Confidence            1 99999999986531  111    1  12347888888873  22333333333322 456788999999876432  2


Q ss_pred             HHHHHHHHhCCCe
Q 015657          172 AALSVKEVSGKPI  184 (403)
Q Consensus       172 ~~~~~~~~~g~pi  184 (403)
                      ....+.+.++.|+
T Consensus       134 ~~~~~~~~~~~~v  146 (179)
T cd02036         134 MVEDIEEILGVPL  146 (179)
T ss_pred             HHHHHHHHhCCCE
Confidence            2345666788887

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=99.57  E-value=1.6e-14  Score=142.37  Aligned_cols=169  Identities=21%  Similarity=0.260  Sum_probs=102.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH-----------H----hhh----------
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------I----LGE----------   67 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~-----------~----~~~----------   67 (403)
                      ++.++|+++|+||+||||++.+||.+|+++|++|++||+|++++.....+.           .    ..+          
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~  108 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFK  108 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEE
Confidence            467999999999999999999999999999999999999998754321110           0    000          


Q ss_pred             ccCCceEeCCCCC---CH----HHHHHHHHHHH---HhCCCcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEE
Q 015657           68 QVGVPVYTAGTEV---KP----SQIAKQGLEEA---KKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLV  134 (403)
Q Consensus        68 ~~gv~v~~~~~~~---~~----~~~~~~~l~~~---~~~~~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllV  134 (403)
                      ..|+.+...+...   .+    .....+.++.+   .| +||||||||+|....   ...+..       .+ .+.+++|
T Consensus       109 ~~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~~-------~~-ad~VIVV  179 (329)
T cd02033         109 RDGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIAR-------DM-AQKVIVV  179 (329)
T ss_pred             eCCEEEecCCCCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhhh-------cC-CceEEEe
Confidence            1122322222110   11    11122344443   34 799999999887642   111111       11 3566777


Q ss_pred             Eecc--cHHHHHH------HHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657          135 VDAM--TGQEAAA------LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       135 vda~--~g~~~~~------~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      +...  ....+.+      .++......++.|+|+||.|+..   .+..+.+.++.|+  ++..|..++
T Consensus       180 t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~---~ie~~ae~lgi~v--Lg~IP~D~~  243 (329)
T cd02033         180 GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG---EAQAFAAHAGIPI--LAAIPADEE  243 (329)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc---hHHHHHHHhCCCE--EEECCCCHH
Confidence            6652  1222222      22223335678999999998632   3667778889998  777765443

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=99.56  E-value=1.2e-13  Score=140.68  Aligned_cols=205  Identities=21%  Similarity=0.248  Sum_probs=140.4

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .++|+|. +|+||||+++.|+++|.++|.+|..+.+-   |+++|.. .+....+.++...+.+....+.+++.+..   
T Consensus         3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~G---pd~iD~~-~~~~~~g~~~~nld~~~~~~~~i~~~~~~---   75 (433)
T PRK13896          3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAG---PDFIDPS-HHEAVAGRPSRTLDPWLSGEDGMRRNYYR---   75 (433)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeC---CCCCCHH-HHHHHhCCCcccCChhhCCHHHHHHHHHh---
Confidence            4788888 99999999999999999999999877653   4444433 23444556666666665555555554432   


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHH---HHhhh----cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALV---TTFNI----EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~---~~~~~----~~~i~GvIlNk~D~~  167 (403)
                      ..+|++||+++|++....  .....++.+.+. .++++|+|+..+ .+....+   ..|..    .+++.|||+|++.+.
T Consensus        76 ~~~d~~vIEG~gGl~dg~--~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~  152 (433)
T PRK13896         76 GEGDICVVEGVMGLYDGD--VSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGG  152 (433)
T ss_pred             hcCCEEEEECCCccccCC--CCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcH
Confidence            348999999999986532  123466677776 789999999555 3344333   23444    689999999999887


Q ss_pred             CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHH
Q 015657          168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF  247 (403)
Q Consensus       168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl  247 (403)
                      .+...+.+..+. ++|+  +|..++.+++..  |    +||||+....+. +...+.+         .+ .+..+|++.+
T Consensus       153 ~h~~~l~~~~~~-~i~v--lG~lP~~~~~~~--~----~RHLGLv~~~e~-~~~~~~~---------~~-~~~~~d~~~l  212 (433)
T PRK13896        153 RHADGIRDALPD-ELTY--FGRIPPRDDLEI--P----DRHLGLHMGSEA-PLDDDAL---------DE-AAEHIDAERL  212 (433)
T ss_pred             HHHHHHHHhhhh-cCce--eEecccCCCCCC--C----CCCcCCCcchhh-ccHHHHH---------HH-HHHhCCHHHH
Confidence            666665555544 6777  999999888665  6    999999765542 1111111         11 3456889888


Q ss_pred             HHHH
Q 015657          248 LKQT  251 (403)
Q Consensus       248 ~~ql  251 (403)
                      ++..
T Consensus       213 ~~~a  216 (433)
T PRK13896        213 AAVA  216 (433)
T ss_pred             HHHh
Confidence            7765

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=99.56  E-value=4e-14  Score=143.97  Aligned_cols=162  Identities=20%  Similarity=0.213  Sum_probs=96.8

Q ss_pred             CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-------------HHHH-h-------------
Q 015657           14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------------QLVI-L-------------   65 (403)
Q Consensus        14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-------------~l~~-~-------------   65 (403)
                      +.++|+|+ .+|||||||+|.+||.+|+.+|+||++||+|++......             .+.. +             
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i  199 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVI  199 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHHHhe
Confidence            34778777 569999999999999999999999999999998643210             0000 0             


Q ss_pred             --hhccCCceEeCCCCCCH-------------------HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhh
Q 015657           66 --GEQVGVPVYTAGTEVKP-------------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR  124 (403)
Q Consensus        66 --~~~~gv~v~~~~~~~~~-------------------~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~  124 (403)
                        ....|+++++.+.....                   ...++++++.+. ++||||||||||.+..  ...      ..
T Consensus       200 ~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~--~t~------~a  270 (405)
T PRK13869        200 RPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGF--LTL------SG  270 (405)
T ss_pred             eccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhH--HHH------HH
Confidence              01124555554421110                   123556667764 6899999999999853  111      11


Q ss_pred             hcCCceEEEEEecccH-----HHHHH----HH---HHhhhc--CCeeEEEEccCCCCCc--hhHHHHHHHHhCCCe
Q 015657          125 VLNPTEVLLVVDAMTG-----QEAAA----LV---TTFNIE--IGITGAILTKLDGDSR--GGAALSVKEVSGKPI  184 (403)
Q Consensus       125 ~~~~~~vllVvda~~g-----~~~~~----~~---~~~~~~--~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi  184 (403)
                      ...++.+++++.+..-     .....    ..   ...+..  +.+.+|++|++|....  ......+.+.++.++
T Consensus       271 l~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~~~~~~~~~l~~~~~~~v  346 (405)
T PRK13869        271 LCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVAALLRNMFEDHV  346 (405)
T ss_pred             HHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCcHHHHHHHHHHHHhhhhh
Confidence            2224777777766221     12221    11   121222  3467899999996543  234455666666544

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=99.55  E-value=1.7e-13  Score=138.44  Aligned_cols=162  Identities=19%  Similarity=0.260  Sum_probs=97.0

Q ss_pred             CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHH----------------HHHHh---------
Q 015657           13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAID----------------QLVIL---------   65 (403)
Q Consensus        13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~----------------~l~~~---------   65 (403)
                      .+++||+|+ .+|||||||+|.+||.+|+.+|+||++||+ |+|...+..                .+...         
T Consensus       104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i  183 (387)
T PHA02519        104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAI  183 (387)
T ss_pred             CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCccccccccccHHHHHhCCCcchHhhe
Confidence            446888787 559999999999999999999999999996 997643210                00000         


Q ss_pred             --hhccCCceEeCCCCC------------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhh
Q 015657           66 --GEQVGVPVYTAGTEV------------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV  125 (403)
Q Consensus        66 --~~~~gv~v~~~~~~~------------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~  125 (403)
                        ....|+++++.+...                  .+...++++++.+. ++||||||||||.+..  ....   .   .
T Consensus       184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~--lt~n---A---L  254 (387)
T PHA02519        184 KPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGT--GTIN---V---V  254 (387)
T ss_pred             ecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccH--HHHH---H---H
Confidence              011355566554211                  12334566777774 7899999999999853  1111   1   1


Q ss_pred             cCCceEEEEEecccH-----HHHHHHH----HHhhh---cCCeeEEEEccCCCCC--chh-HHHHHHHHhCCCe
Q 015657          126 LNPTEVLLVVDAMTG-----QEAAALV----TTFNI---EIGITGAILTKLDGDS--RGG-AALSVKEVSGKPI  184 (403)
Q Consensus       126 ~~~~~vllVvda~~g-----~~~~~~~----~~~~~---~~~i~GvIlNk~D~~~--~~~-~~~~~~~~~g~pi  184 (403)
                      ..++.+++++.+..-     ......+    ..+..   ... ..+++|++|...  ... ....+.+.+|-.+
T Consensus       255 ~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~~~~~~~~~~i~~~l~~~~g~~v  327 (387)
T PHA02519        255 CAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPV-VRLLLTKYSLTVGNQSRWMEEQIRNTWGSMV  327 (387)
T ss_pred             HHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCC-eEEEEeeECCCCchHHHHHHHHHHHHhcccc
Confidence            223677777765211     1122222    11111   112 338999999763  223 3356777777655

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=99.55  E-value=1.1e-13  Score=150.63  Aligned_cols=149  Identities=26%  Similarity=0.352  Sum_probs=104.3

Q ss_pred             cCCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------------------Hhhhc
Q 015657           11 AKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQ   68 (403)
Q Consensus        11 ~~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------------------~~~~~   68 (403)
                      .+.++++|+|++. +|+||||+|.+||.+|+..|+||++||+|+++|.....+.                     .....
T Consensus       527 ~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~  606 (726)
T PRK09841        527 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK  606 (726)
T ss_pred             cCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCC
Confidence            3457799999988 9999999999999999999999999999999876533210                     00112


Q ss_pred             cCCceEeCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccH-HhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657           69 VGVPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDK-AMMDELKDVKRVLNPTEVLLVVDA--MT  139 (403)
Q Consensus        69 ~gv~v~~~~~-~~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~-~l~~el~~i~~~~~~~~vllVvda--~~  139 (403)
                      .++++++.+. ...|.+.     +.+.+..++ ..||+|||||||.+...+ ..+..        .+|.+++|+.+  +.
T Consensus       607 ~~l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la~--------~ad~~llVvr~~~t~  677 (726)
T PRK09841        607 GGFDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGR--------SVGTSLLVARFGLNT  677 (726)
T ss_pred             CCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHH--------hCCeEEEEEeCCCCC
Confidence            3566776654 2345443     466677775 689999999999886532 22221        24888999887  33


Q ss_pred             HHHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657          140 GQEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus       140 g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      ...+...++.+. ....+.|+|+|+++...
T Consensus       678 ~~~~~~~~~~l~~~~~~~~G~VlN~~~~~~  707 (726)
T PRK09841        678 AKEVSLSMQRLEQAGVNIKGAILNGVIKRA  707 (726)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEeCcccCc
Confidence            345555555443 45678999999998544

>PRK10818 cell division inhibitor MinD; Provisional

Probab=99.55  E-value=1.5e-13  Score=132.10  Aligned_cols=167  Identities=17%  Similarity=0.203  Sum_probs=100.6

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH--------------H---------H-hhhccC
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL--------------V---------I-LGEQVG   70 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l--------------~---------~-~~~~~g   70 (403)
                      ++|+|+ ++||+||||+|++||.+|+++|++|++||+|++.+.....+              .         . .....+
T Consensus         3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (270)
T PRK10818          3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN   82 (270)
T ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence            567776 56999999999999999999999999999999743321100              0         0 001235


Q ss_pred             CceEeCCCCCCH----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHH
Q 015657           71 VPVYTAGTEVKP----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA  144 (403)
Q Consensus        71 v~v~~~~~~~~~----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~  144 (403)
                      +.+++.+.....    .....+.++.++...|||||||||+++...  ....      ....|.+++|+++..  ...+.
T Consensus        83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~--~~~~------l~~ad~vivv~~p~~~sl~~~~  154 (270)
T PRK10818         83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--ALMA------LYFADEAIITTNPEVSSVRDSD  154 (270)
T ss_pred             EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHH--HHHH------HHhCCeEEEEcCCCchHHHhHH
Confidence            555555432211    112356666665457999999999988531  1111      123488899988832  22333


Q ss_pred             HHHHHhh--------hcCCe-eEEEEccCCCCCch----hHHHHHHHHhCCCeEEeeccCC
Q 015657          145 ALVTTFN--------IEIGI-TGAILTKLDGDSRG----GAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       145 ~~~~~~~--------~~~~i-~GvIlNk~D~~~~~----~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      .....+.        ...++ .++|+|+++.....    .....+.+.++.++  ++..+.
T Consensus       155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~Ip~  213 (270)
T PRK10818        155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPE  213 (270)
T ss_pred             HHHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcE--EEEecC
Confidence            3332221        11122 47999999865321    13455677788876  455444

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=99.55  E-value=6.9e-14  Score=136.59  Aligned_cols=168  Identities=19%  Similarity=0.238  Sum_probs=95.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHHhhh----ccC---Cce----
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVILGE----QVG---VPV----   73 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~~~~----~~g---v~v----   73 (403)
                      ++|+|+|+||+||||+|.+||.+|+++|+||++||+|++.+...           .++.....    ...   +..    
T Consensus         1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~   80 (296)
T TIGR02016         1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI   80 (296)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence            46788899999999999999999999999999999998763321           11110000    000   000    


Q ss_pred             ---------EeCCCCC-C-----HH-HHHHHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEE
Q 015657           74 ---------YTAGTEV-K-----PS-QIAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV  135 (403)
Q Consensus        74 ---------~~~~~~~-~-----~~-~~~~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVv  135 (403)
                               ...+... .     +. ......++.+.  ..+||||||||++.+...... ..+.   . ..++.+++|+
T Consensus        81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~-~~~a---~-~~Ad~viVvt  155 (296)
T TIGR02016        81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFA-TPLA---R-SLAEEVIVIG  155 (296)
T ss_pred             cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccc-cchh---h-hhCCeEEEEe
Confidence                     0000000 0     00 11134444432  247999999998754211000 0000   0 1247888888


Q ss_pred             ecc--cH---HHHHHHHHHhh---hcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657          136 DAM--TG---QEAAALVTTFN---IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       136 da~--~g---~~~~~~~~~~~---~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                      .+.  .-   ..+...+..+.   ..+++.|+|+|+++..   +....+.+.++.|+  ++..|..
T Consensus       156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~---~~~~~~~~~~~i~v--Lg~IP~d  216 (296)
T TIGR02016       156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS---GEAQAFAREVGIPV--LAAIPAD  216 (296)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc---cHHHHHHHHcCCCe--EEECCCC
Confidence            762  21   22333333332   2467899999999863   24466677889988  7766543

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PRK10037 cell division protein; Provisional

Probab=99.55  E-value=1.1e-13  Score=132.02  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHH--------HhhhccCCce
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV--------ILGEQVGVPV   73 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~--------~~~~~~gv~v   73 (403)
                      ++|+++ .+||+||||+|.+||.+|+++|+||++||+|++.....             +.+.        ......|+++
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   81 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDL   81 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEE
Confidence            356666 66999999999999999999999999999999863221             0000        0011235566


Q ss_pred             EeCCCCCCHH------------HHHHHHHHHHHh-CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH
Q 015657           74 YTAGTEVKPS------------QIAKQGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG  140 (403)
Q Consensus        74 ~~~~~~~~~~------------~~~~~~l~~~~~-~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g  140 (403)
                      ++.+. ....            ..+.+.+..++. ..||||||||||....  ....    .  ...+|.+++++.+...
T Consensus        82 ip~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~--~~~~----a--l~aaD~vlvpv~~~~~  152 (250)
T PRK10037         82 LPFGQ-LSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASP--LTRQ----L--LSLCDHSLAIVNVDAN  152 (250)
T ss_pred             EcCCC-CCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccH--HHHH----H--HHhCCEEEEEcCcCHH
Confidence            66542 2111            123455666631 5899999999998742  1111    1  1224888888877432


Q ss_pred             HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657          141 QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus       141 ~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                       ...+..+... .. -..+++|+++.
T Consensus       153 -~~i~~~~~~~-~~-~~~i~~n~~~~  175 (250)
T PRK10037        153 -CHIRLHQQAL-PA-GAHILINDLRI  175 (250)
T ss_pred             -HHHhhhcccc-CC-CeEEEEecCCc
Confidence             2222222111 11 23478899874

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=99.54  E-value=2.6e-13  Score=139.80  Aligned_cols=213  Identities=22%  Similarity=0.350  Sum_probs=136.2

Q ss_pred             EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      ++|+|. +||||||+++.|+++|+++|++|..+.+-   |+.++.. .+....+.+....+.+....+.+++.+..+ ..
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g---~d~~D~~-~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~-~~   76 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG---PDYIDPM-FHTQATGRPSRNLDSFFMSEAQIQECFHRH-SK   76 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC---CCCCCHH-HHHHHhCCchhhCCcccCCHHHHHHHHHHh-cc
Confidence            678888 99999999999999999999999977652   3323322 122223333333333333456667777776 36


Q ss_pred             CCcEEEEeCCCCccccH---HhHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHH---HHhhhcCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDK---AMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~---~l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~---~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ++|++||+++|++....   .-.....++++.++ .++++|+++.. ...+..+.   ..+...+.+.|+|+|+++.+.+
T Consensus        77 ~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~-~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v~~~~~  155 (449)
T TIGR00379        77 GTDYSIIEGVRGLYDGISAITDYGSTASVAKALD-APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRVGSERH  155 (449)
T ss_pred             cCCEEEEecCCccccCCCCCCCCccHHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECCCCHHH
Confidence            89999999998775310   00122345666666 79999999854 33334433   2345678899999999987544


Q ss_pred             hhHHH-HHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHHH
Q 015657          170 GGAAL-SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFL  248 (403)
Q Consensus       170 ~~~~~-~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl~  248 (403)
                      ..... .+.+.++.|+  +|..+..+++..  |    +||||+..+.+. +...+.+      +......+..+|++.++
T Consensus       156 ~~~~~~~i~~~~gipv--LG~IP~~~~l~~--p----~rhLgLv~~~e~-~~~~~~~------~~~~~~~~~~~d~~~l~  220 (449)
T TIGR00379       156 LEKLKIAVEPLRGIPI--LGVIPRQQDLKV--P----DRHLGLVPAGER-EIIQQIF------DWLAEVVEKYLDLDKLL  220 (449)
T ss_pred             HHHHHHHHHHhCCCCE--EEEecCccccCC--C----CcccCCCChhhh-hhHHHHH------HHHHHHHHhhCCHHHHH
Confidence            33333 3444478888  888888777554  5    899999866653 1222221      12223446678888887


Q ss_pred             HHH
Q 015657          249 KQT  251 (403)
Q Consensus       249 ~ql  251 (403)
                      +..
T Consensus       221 ~~a  223 (449)
T TIGR00379       221 EIA  223 (449)
T ss_pred             HHh
Confidence            654

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.2e-13  Score=129.89  Aligned_cols=176  Identities=20%  Similarity=0.275  Sum_probs=112.8

Q ss_pred             cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh--------------hccCCceE
Q 015657            9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG--------------EQVGVPVY   74 (403)
Q Consensus         9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~--------------~~~gv~v~   74 (403)
                      .+..-+..|++++|+||+||||++.+||.+|++.|++|.++|.|.+.|....-+-...              ...++.+.
T Consensus        42 ~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~m  121 (300)
T KOG3022|consen   42 NLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLM  121 (300)
T ss_pred             cccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEE
Confidence            3445566777778999999999999999999999999999999999988633221111              11122222


Q ss_pred             eCCC----------CCCH--HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCC-ceEEEEEec--cc
Q 015657           75 TAGT----------EVKP--SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP-TEVLLVVDA--MT  139 (403)
Q Consensus        75 ~~~~----------~~~~--~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~-~~vllVvda--~~  139 (403)
                      ..+.          |-.|  ...+++.+....|...||+|||||++.....-      .+...+.. +.+++|..+  ..
T Consensus       122 S~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehl------s~~~~~~~~~gAviVTTPQ~vA  195 (300)
T KOG3022|consen  122 SMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHL------SLVQFLRESDGAVIVTTPQEVA  195 (300)
T ss_pred             EeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhh------heeecccccCceEEEeCchhhh
Confidence            1111          1111  23567778877788999999999998763211      11112222 556666555  23


Q ss_pred             HHHHHHHHHHh-hhcCCeeEEEEccCCCC----C------chhHHHHHHHHhCCCeEEeeccCC
Q 015657          140 GQEAAALVTTF-NIEIGITGAILTKLDGD----S------RGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       140 g~~~~~~~~~~-~~~~~i~GvIlNk~D~~----~------~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      -+++.+.+.-+ ...+++.|+|-|+..-.    .      ..+....+.+.+|+|.  +|..|-
T Consensus       196 l~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~--Lg~iPl  257 (300)
T KOG3022|consen  196 LQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPL--LGSLPL  257 (300)
T ss_pred             hHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCe--EeecCC
Confidence            34444444433 35788999999987521    1      1255677888999988  776654

>PRK11519 tyrosine kinase; Provisional

Probab=99.54  E-value=2e-13  Score=148.38  Aligned_cols=148  Identities=24%  Similarity=0.340  Sum_probs=102.2

Q ss_pred             CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------------------Hhhhcc
Q 015657           12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQV   69 (403)
Q Consensus        12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------------------~~~~~~   69 (403)
                      ..++++|+|++. +|+||||++.+||..|+..|+||++||+|+++|.....+.                     ......
T Consensus       523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~  602 (719)
T PRK11519        523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIA  602 (719)
T ss_pred             CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcC
Confidence            456789999986 9999999999999999999999999999998875432210                     011124


Q ss_pred             CCceEeCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec-ccH-H
Q 015657           70 GVPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG-Q  141 (403)
Q Consensus        70 gv~v~~~~~-~~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda-~~g-~  141 (403)
                      ++.+++.+. ...|.+.     +.+.++.++ ..||+|||||||.+...+..     .+..  .+|.+++|+.+ .+. .
T Consensus       603 ~l~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~-----~l~~--~~d~~l~Vvr~~~t~~~  674 (719)
T PRK11519        603 NFDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-----IVGR--HVGTTLMVARYAVNTLK  674 (719)
T ss_pred             CEEEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHH-----HHHH--HCCeEEEEEeCCCCCHH
Confidence            566777654 3345443     456677775 78999999999987642211     1111  24888999887 333 3


Q ss_pred             HHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657          142 EAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus       142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .+......+. ...++.|+|+|+++..
T Consensus       675 ~~~~~~~~l~~~~~~~~G~VlN~v~~~  701 (719)
T PRK11519        675 EVETSLSRFEQNGIPVKGVILNSIFRR  701 (719)
T ss_pred             HHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence            3333344443 4678899999999744

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=99.54  E-value=3.9e-13  Score=127.94  Aligned_cols=166  Identities=22%  Similarity=0.296  Sum_probs=100.5

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh--------------HHHH---------HH-hhhccC
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA--------------IDQL---------VI-LGEQVG   70 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~--------------~~~l---------~~-~~~~~g   70 (403)
                      ++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+..              .+.+         .. .....+
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   81 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN   81 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence            567666 5699999999999999999999999999999863211              1100         00 011235


Q ss_pred             CceEeCCCCCC----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHH
Q 015657           71 VPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA  144 (403)
Q Consensus        71 v~v~~~~~~~~----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~  144 (403)
                      +.+++.+....    ....+.+.++.+. ..||+||||||+.+..  .....      ....|.+++|+.+..  ...+.
T Consensus        82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~--~~~~~------l~~aD~viiv~~~~~~s~~~~~  152 (261)
T TIGR01968        82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIES--GFRNA------VAPADEAIVVTTPEVSAVRDAD  152 (261)
T ss_pred             eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCH--HHHHH------HHhCCeEEEEcCCCcHHHHHHH
Confidence            56665543211    1234566777775 6799999999998753  11111      123478888888732  23333


Q ss_pred             HHHHHhhh-cCCeeEEEEccCCCCCc----hhHHHHHHHHhCCCeEEeeccCC
Q 015657          145 ALVTTFNI-EIGITGAILTKLDGDSR----GGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       145 ~~~~~~~~-~~~i~GvIlNk~D~~~~----~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      .....+.. .....++|+|+++....    ...+..+.+.++.|+  ++..+.
T Consensus       153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~  203 (261)
T TIGR01968       153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEILSIPL--IGVIPE  203 (261)
T ss_pred             HHHHHHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHhCCce--eEEccC
Confidence            33332221 13356799999985321    112445667778776  454443

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=99.53  E-value=1.6e-13  Score=139.02  Aligned_cols=163  Identities=19%  Similarity=0.241  Sum_probs=96.8

Q ss_pred             CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH----------------HHHHh----------
Q 015657           13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID----------------QLVIL----------   65 (403)
Q Consensus        13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~----------------~l~~~----------   65 (403)
                      .++++|+|+ .+||+||||+|.+||.+|+.+|+||++||+|++......                .+...          
T Consensus       102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  181 (387)
T TIGR03453       102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQPEFDVGENETLYGAIRYDDERRPLSEI  181 (387)
T ss_pred             CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCCcccccccCccHHHHHhccccccCHHhh
Confidence            455788877 559999999999999999999999999999998643210                00000          


Q ss_pred             ---hhccCCceEeCCCCCC------H-------------HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHh
Q 015657           66 ---GEQVGVPVYTAGTEVK------P-------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK  123 (403)
Q Consensus        66 ---~~~~gv~v~~~~~~~~------~-------------~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~  123 (403)
                         ....++++++.+....      +             ...+.+.+..+. +.||+|||||||.+..  .      ...
T Consensus       182 i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~--~------~~~  252 (387)
T TIGR03453       182 IRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGF--L------TLS  252 (387)
T ss_pred             cccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhH--H------HHH
Confidence               0112455555432110      0             123455666664 6899999999998742  1      111


Q ss_pred             hhcCCceEEEEEeccc--HHH---HH-------HHHHHhh--hcCCeeEEEEccCCCCC--chhHHHHHHHHhCCCe
Q 015657          124 RVLNPTEVLLVVDAMT--GQE---AA-------ALVTTFN--IEIGITGAILTKLDGDS--RGGAALSVKEVSGKPI  184 (403)
Q Consensus       124 ~~~~~~~vllVvda~~--g~~---~~-------~~~~~~~--~~~~i~GvIlNk~D~~~--~~~~~~~~~~~~g~pi  184 (403)
                      ....++.+++++.+..  ...   ..       ..+....  ....+.++++|+++...  +......+.+.++.++
T Consensus       253 al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~v  329 (387)
T TIGR03453       253 ALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDGPQAQMVAFLRSLFGDHV  329 (387)
T ss_pred             HHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCccHHHHHHHHHHHhcccc
Confidence            1223477777777621  111   11       1112221  12346789999998653  2333444556666655

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.52  E-value=3.6e-13  Score=128.73  Aligned_cols=158  Identities=22%  Similarity=0.330  Sum_probs=89.1

Q ss_pred             CEEEEEEc-CCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhH------------HHHHHh-hh----------cc
Q 015657           15 PTVILLAG-LQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI------------DQLVIL-GE----------QV   69 (403)
Q Consensus        15 ~~iI~v~G-~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~------------~~l~~~-~~----------~~   69 (403)
                      +.+|.|++ +||+||||+|.+||.+|+ .+|+||++||+||++..+.            ..+... ..          ..
T Consensus         2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
T COG1192           2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIE   81 (259)
T ss_pred             CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcccchhHHHHHhcccccccchhcccCCC
Confidence            56777775 499999999999999999 5679999999999864331            111110 01          13


Q ss_pred             CCceEeCCCCCC-----------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657           70 GVPVYTAGTEVK-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM  138 (403)
Q Consensus        70 gv~v~~~~~~~~-----------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~  138 (403)
                      +++++++.....           ....+++.+..+ .++||+|||||||.+..  .....      ....+.+++.+.+.
T Consensus        82 ~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~yD~iiID~pp~l~~--l~~na------l~asd~vlIP~~~~  152 (259)
T COG1192          82 GLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPV-KDDYDYIIIDTPPSLGV--LTLNA------LAAADHVLIPVQPE  152 (259)
T ss_pred             CceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhh-ccCCCEEEECCCCchhH--HHHHH------HHHcCeeEEecCch
Confidence            445555543332           111223333322 36899999999999842  11111      11125455555541


Q ss_pred             -cH----HHHHHHHHHh----hhcCCeeEEEEccCCCCCc--hhHHHHHHHHhC
Q 015657          139 -TG----QEAAALVTTF----NIEIGITGAILTKLDGDSR--GGAALSVKEVSG  181 (403)
Q Consensus       139 -~g----~~~~~~~~~~----~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g  181 (403)
                       ..    ......+..+    ...+.+.++++|+++....  ......+.+..+
T Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  206 (259)
T COG1192         153 FLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLADEVLQELKQLLG  206 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchHHHHHHHHHHHhc
Confidence             11    1112222222    1224678899999997643  344455555555

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=99.52  E-value=1.5e-13  Score=138.96  Aligned_cols=162  Identities=23%  Similarity=0.295  Sum_probs=96.2

Q ss_pred             CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHH-------------HHH--Hhh---------
Q 015657           13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAID-------------QLV--ILG---------   66 (403)
Q Consensus        13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~-------------~l~--~~~---------   66 (403)
                      .++++|+|+ .+|||||||+|.+||.+|+.+|+||++||+ |+|...+..             .+.  ...         
T Consensus       104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i  183 (388)
T PRK13705        104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAI  183 (388)
T ss_pred             CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccccccccccHHHHHhcCCCchhhhe
Confidence            356888887 559999999999999999999999999996 998743210             000  000         


Q ss_pred             ---hccCCceEeCCCCC------------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhh
Q 015657           67 ---EQVGVPVYTAGTEV------------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV  125 (403)
Q Consensus        67 ---~~~gv~v~~~~~~~------------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~  125 (403)
                         ...|+++++++...                  .+...+++.++.+. +.||||||||||.+..  ....   .   .
T Consensus       184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~--~t~n---a---l  254 (388)
T PRK13705        184 KPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGI--GTIN---V---V  254 (388)
T ss_pred             ecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhH--HHHH---H---H
Confidence               01355566553211                  12345566677664 6899999999998753  1111   1   1


Q ss_pred             cCCceEEEEEeccc--H---HHHHHHHHHhhh-------cCCeeEEEEccCCCCCc--hh-HHHHHHHHhCCCe
Q 015657          126 LNPTEVLLVVDAMT--G---QEAAALVTTFNI-------EIGITGAILTKLDGDSR--GG-AALSVKEVSGKPI  184 (403)
Q Consensus       126 ~~~~~vllVvda~~--g---~~~~~~~~~~~~-------~~~i~GvIlNk~D~~~~--~~-~~~~~~~~~g~pi  184 (403)
                      ..+|.+++++.+..  -   ......+..+..       ... ..+++|++|....  .. ....+.+.++..+
T Consensus       255 ~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~~~~~~~~~~~~~~l~~~~~~~v  327 (388)
T PRK13705        255 CAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPD-VRILLTKYSNSNGSQSPWMEEQIRDAWGSMV  327 (388)
T ss_pred             HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCC-eEEEEEEecCCCchHHHHHHHHHHHHhcccc
Confidence            12377777776621  1   122222222211       112 3389999987642  22 3345666676554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=99.50  E-value=3.8e-13  Score=147.18  Aligned_cols=150  Identities=20%  Similarity=0.238  Sum_probs=100.1

Q ss_pred             CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---------------------Hhhhcc
Q 015657           12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQV   69 (403)
Q Consensus        12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---------------------~~~~~~   69 (403)
                      +.++++|+|++. +|+||||+|.+||..|++.|++|++||+|+++|.....+.                     ......
T Consensus       543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~  622 (754)
T TIGR01005       543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAA  622 (754)
T ss_pred             CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCC
Confidence            456788988866 9999999999999999999999999999999876533221                     011123


Q ss_pred             CCceEeCCCC-CCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHH
Q 015657           70 GVPVYTAGTE-VKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQ  141 (403)
Q Consensus        70 gv~v~~~~~~-~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~  141 (403)
                      ++++++.+.. ..+.+.     +.+.+..++ ..||+|||||||.+.....     ..+..  ..|.+++|+.+  ....
T Consensus       623 ~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~-----~~l~~--~~D~vl~v~~~~~~~~~  694 (754)
T TIGR01005       623 SLPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDM-----RAAAR--LAIIMLLVTAYDRVVVE  694 (754)
T ss_pred             CeeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHH-----HHhhh--hCCeEEEEEEeCceeHH
Confidence            5667766542 233332     356677774 7899999999998753111     11111  24788888876  2223


Q ss_pred             HHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657          142 EAAALVTTFN-IEIGITGAILTKLDGDSR  169 (403)
Q Consensus       142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~~~  169 (403)
                      .....++.+. ...++.|+|+|++|...+
T Consensus       695 ~~~~~~~~l~~~~~~~~GvvlN~~~~~~~  723 (754)
T TIGR01005       695 CGRADAQGISRLNGEVTGVFLNMLDPNDE  723 (754)
T ss_pred             HHHHHHHHHHhcCCceEEEEecCCChhhh
Confidence            3333333332 245678999999986544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=99.48  E-value=2.2e-12  Score=127.52  Aligned_cols=160  Identities=24%  Similarity=0.272  Sum_probs=99.1

Q ss_pred             CCEEEEEEc-CCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHH-------------Hhh
Q 015657           14 RPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV-------------ILG   66 (403)
Q Consensus        14 ~~~iI~v~G-~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~-------------~~~   66 (403)
                      ..++|+|+| +||+||||++.+||.+|+++|++|++||+|++.+...             ..+.             ...
T Consensus        92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  171 (322)
T TIGR03815        92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP  171 (322)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence            457888875 5999999999999999999999999999999865421             0110             011


Q ss_pred             hccCCceEeCCCCC---CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657           67 EQVGVPVYTAGTEV---KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ  141 (403)
Q Consensus        67 ~~~gv~v~~~~~~~---~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~  141 (403)
                      ...++.+++.+...   .....++..++.++ ..|||||||||+.....  ..    .+.  ..+|.+++|+++..  ..
T Consensus       172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~--~~----~~L--~~AD~vliV~~~~~~sl~  242 (322)
T TIGR03815       172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPA--AE----TAL--ESADLVLVVVPADVRAVA  242 (322)
T ss_pred             CcCCeEEEecCCCCcCCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHH--HH----HHH--HHCCEEEEEcCCcHHHHH
Confidence            12345555544321   22345677777774 78999999999987421  11    111  12488888888732  23


Q ss_pred             HHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       142 ~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                      .+.+..+.+...-.-..+|+|+....  .-....+.+.++.|+
T Consensus       243 ~a~r~l~~l~~~~~~~~lVv~~~~~~--~~~~~~i~~~lg~~v  283 (322)
T TIGR03815       243 AAARVCPELGRRNPDLRLVVRGPAPA--GLDPEEIAESLGLPL  283 (322)
T ss_pred             HHHHHHHHHhhhCCCeEEEEeCCCCC--CCCHHHHHHHhCCCc
Confidence            33344443332211235677765422  123456777788887

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=99.48  E-value=1.3e-12  Score=125.06  Aligned_cols=168  Identities=20%  Similarity=0.330  Sum_probs=99.5

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHH-HHHhCCCcEEEEeccCCChhh------------H----------HHHHHhhhccC
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLAN-YLKKQGKSCMLVAGDVYRPAA------------I----------DQLVILGEQVG   70 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~-~L~~~G~kVllVd~D~~rp~~------------~----------~~l~~~~~~~g   70 (403)
                      .++|+++ |+||+||||++++|+. .++.+|++|+++|+|+.-+..            +          ++........|
T Consensus         2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g   81 (262)
T COG0455           2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG   81 (262)
T ss_pred             CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence            3556555 9999999999999944 455567888999999753221            1          11111222256


Q ss_pred             CceEeCCCCCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHHHH
Q 015657           71 VPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEA  143 (403)
Q Consensus        71 v~v~~~~~~~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~~~  143 (403)
                      +.+++.+......     +.....+..+. ..|||||||||++++.+.        +...+..+.+++|+.+  ....++
T Consensus        82 l~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~--------~~~~~~sd~~viVt~pe~~si~~A  152 (262)
T COG0455          82 LYVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT--------LSFILSSDELVIVTTPEPTSITDA  152 (262)
T ss_pred             EEEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH--------HHHHHhcCcEEEEeCCCcchHHHH
Confidence            7777765543222     22345566664 577999999999987422        1122233778888776  333555


Q ss_pred             HHHHHH-hhhcCCeeE--EEEccCCCCCch-hHHHHHHHH-hCC-CeEEeeccC
Q 015657          144 AALVTT-FNIEIGITG--AILTKLDGDSRG-GAALSVKEV-SGK-PIKLVGRGE  191 (403)
Q Consensus       144 ~~~~~~-~~~~~~i~G--vIlNk~D~~~~~-~~~~~~~~~-~g~-pi~fig~ge  191 (403)
                      ....+. ........+  +|+|++++.... .....+.+. ... ++.+++..+
T Consensus       153 ~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  206 (262)
T COG0455         153 YKTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDP  206 (262)
T ss_pred             HHHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCCceeEeccCh
Confidence            555443 344556666  999999854432 222222222 222 555666555

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=99.47  E-value=2.8e-12  Score=122.64  Aligned_cols=151  Identities=24%  Similarity=0.249  Sum_probs=86.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHh-h----hc---cCCceEeCCC---------
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL-G----EQ---VGVPVYTAGT---------   78 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~-~----~~---~gv~v~~~~~---------   78 (403)
                      ++++++|+||+||||+++++|.++++.|++|++||+|+.+ ...+.+... +    ..   .++.....+.         
T Consensus         1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~   79 (254)
T cd00550           1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQ   79 (254)
T ss_pred             CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHH
Confidence            4789999999999999999999999999999999999864 322222110 0    00   0111110000         


Q ss_pred             ------------------------CCCHHHHH--HHHHHHHHhCCCcEEEEeCCCCccccH-----HhHHHHHHHhhhcC
Q 015657           79 ------------------------EVKPSQIA--KQGLEEAKKKNVDVVIVDTAGRLQIDK-----AMMDELKDVKRVLN  127 (403)
Q Consensus        79 ------------------------~~~~~~~~--~~~l~~~~~~~~D~VIIDtpg~l~~d~-----~l~~el~~i~~~~~  127 (403)
                                              ...+.+.+  .+..+.+...+||+|||||||..+.-.     +.+..+........
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~  159 (254)
T cd00550          80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPE  159 (254)
T ss_pred             HHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCc
Confidence                                    01111111  222233444689999999999643210     00111111111111


Q ss_pred             CceEEEEEec--ccHHHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657          128 PTEVLLVVDA--MTGQEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus       128 ~~~vllVvda--~~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .+.+++|+.+  ....++.+....+. ..+++.|+|+|++...
T Consensus       160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~  202 (254)
T cd00550         160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE  202 (254)
T ss_pred             ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence            2467888877  33355555555443 3567789999999754

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family

Probab=99.46  E-value=4.2e-12  Score=119.89  Aligned_cols=203  Identities=20%  Similarity=0.255  Sum_probs=118.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh------------HHHHHHhhh-------------ccC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVILGE-------------QVG   70 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~------------~~~l~~~~~-------------~~g   70 (403)
                      +.|+|.|+||.||||++.||+++|+..|+||++|.|||...++            .+.+.....             ..|
T Consensus         1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g   80 (273)
T PF00142_consen    1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG   80 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred             CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence            4689999999999999999999999999999999999864322            233322221             124


Q ss_pred             CceEeCCCCCC----HHHHHHHHHHHHH-----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657           71 VPVYTAGTEVK----PSQIAKQGLEEAK-----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT  139 (403)
Q Consensus        71 v~v~~~~~~~~----~~~~~~~~l~~~~-----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~  139 (403)
                      +.+..++.+..    ...-+..+++.+.     ..++|+|+.|..|......-.+-    +.. -.++++++|...  ++
T Consensus        81 i~CvEsGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamP----ir~-g~a~evyIVtSge~ms  155 (273)
T PF00142_consen   81 ILCVESGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMP----IRE-GYAQEVYIVTSGEFMS  155 (273)
T ss_dssp             EEEEE---SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHH----HHT-TS-SEEEEEEBSSHHH
T ss_pred             ceeeccCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehh----hhh-ccCCEEEEEecCcHHH
Confidence            55665554322    2223333333332     24589999998876643221111    111 123788888877  44


Q ss_pred             HHHHHHHHH---Hhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC--CCCchhhhhhhcCCc
Q 015657          140 GQEAAALVT---TFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE--PFYPDRMAGRILGMG  212 (403)
Q Consensus       140 g~~~~~~~~---~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~--~f~~~~~~~r~lG~~  212 (403)
                      ...+.++.+   .|..  ...+.|+|+|.-+.......+....+.+|.||  ++..|+.+.+.  .++...+++......
T Consensus       156 lyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i--~~~iPr~~~v~~ae~~~~TVie~~P~s~  233 (273)
T PF00142_consen  156 LYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPI--IAFIPRSEIVQRAELYGKTVIEAAPDSE  233 (273)
T ss_dssp             HHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEE--EEEE---HHHHHHHHCTS-CCCC-TTSH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcE--EEecCchHHHHHHHHcCCEEEEeCCCcH
Confidence            455555554   4443  34689999998877777788888999999999  66665543322  233344444445555


Q ss_pred             cHHHHHHHHHHHh
Q 015657          213 DVLSFVEKAQEVM  225 (403)
Q Consensus       213 dv~~l~e~~~e~~  225 (403)
                      ....|.+.++..+
T Consensus       234 ~a~~yr~LA~~I~  246 (273)
T PF00142_consen  234 QAQEYRELARKIL  246 (273)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4455555555444

Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.46  E-value=6e-12  Score=120.07  Aligned_cols=145  Identities=21%  Similarity=0.282  Sum_probs=103.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------HHHHHhhhccCCceEeCCCCC---C
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQLVILGEQVGVPVYTAGTEV---K   81 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------~~l~~~~~~~gv~v~~~~~~~---~   81 (403)
                      .+++.+|.|+|.||+||||++..|...|.++|++|.++.-||..|-+-       -.+..+....|+.+-+....-   .
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG  127 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG  127 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence            456789999999999999999999999999999999999999876541       122334445566665554322   2


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      -....++++..+...+||+|||+|.|.-+.+.+...       .  +|.+++|.-+..|.+....-....+-..+  +++
T Consensus       128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~-------~--aDt~~~v~~pg~GD~~Q~iK~GimEiaDi--~vI  196 (323)
T COG1703         128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIAN-------M--ADTFLVVMIPGAGDDLQGIKAGIMEIADI--IVI  196 (323)
T ss_pred             hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhh-------h--cceEEEEecCCCCcHHHHHHhhhhhhhhe--eeE
Confidence            234456777777778999999999998764433322       1  37777777777776665555544443333  899


Q ss_pred             ccCCCC
Q 015657          162 TKLDGD  167 (403)
Q Consensus       162 Nk~D~~  167 (403)
                      ||.|..
T Consensus       197 NKaD~~  202 (323)
T COG1703         197 NKADRK  202 (323)
T ss_pred             eccChh
Confidence            999944

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.46  E-value=1.7e-11  Score=120.97  Aligned_cols=148  Identities=21%  Similarity=0.244  Sum_probs=98.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh----H-HH--HHHhhhccCCceEeCCC--CC-C
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA----I-DQ--LVILGEQVGVPVYTAGT--EV-K   81 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~----~-~~--l~~~~~~~gv~v~~~~~--~~-~   81 (403)
                      .+++.+|.|+|.+||||||++..|+.+|..+|++|.++..|+..+..    . |.  +..+....++.+.....  .. .
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~  132 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG  132 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence            35689999999999999999999999999999999999999976532    1 11  22223333333333221  12 2


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      ....+.+++..+...+||+|||||+|.......       +..  .+|-+++|+++..+.+.........+-..  -+|+
T Consensus       133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~-------i~~--~aD~vlvv~~p~~gd~iq~~k~gi~E~aD--IiVV  201 (332)
T PRK09435        133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA-------VAG--MVDFFLLLQLPGAGDELQGIKKGIMELAD--LIVI  201 (332)
T ss_pred             hHHHHHHHHHHHhccCCCEEEEECCCCccchhH-------HHH--hCCEEEEEecCCchHHHHHHHhhhhhhhh--eEEe
Confidence            456677888888778999999999998743222       111  24777888776666555443332222222  3899


Q ss_pred             ccCCCCCch
Q 015657          162 TKLDGDSRG  170 (403)
Q Consensus       162 Nk~D~~~~~  170 (403)
                      ||.|.....
T Consensus       202 NKaDl~~~~  210 (332)
T PRK09435        202 NKADGDNKT  210 (332)
T ss_pred             ehhcccchh
Confidence            999976543

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=99.45  E-value=1.8e-12  Score=121.04  Aligned_cols=146  Identities=22%  Similarity=0.237  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-------hhHHHH-------------HHhhhc--------
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------AAIDQL-------------VILGEQ--------   68 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-------~~~~~l-------------~~~~~~--------   68 (403)
                      +++++|+||+||||++++||.++++.|++|++|++|+.++       ...+.+             ......        
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG   80 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence            4788999999999999999999999999999999999883       221111             000000        


Q ss_pred             -cCCceEe-CCCCCCHHHH--HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC--CceEEEEEec--ccH
Q 015657           69 -VGVPVYT-AGTEVKPSQI--AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN--PTEVLLVVDA--MTG  140 (403)
Q Consensus        69 -~gv~v~~-~~~~~~~~~~--~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~--~~~vllVvda--~~g  140 (403)
                       .+..+.. ......+.+.  +.+.++.++..+||+||||||+.......++     ......  .+.+++|+.+  ...
T Consensus        81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~-----~~~l~~~~~~~vllV~~p~~~s~  155 (217)
T cd02035          81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLV-----RELLTDPERTSFRLVTLPEKLPL  155 (217)
T ss_pred             chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHH-----HHHccCCCceEEEEEeCCCccHH
Confidence             0111111 1122344443  3455566653349999999999743211111     111122  2678888887  333


Q ss_pred             HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657          141 QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus       141 ~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .++...+..+. ...++.|+|+|++...
T Consensus       156 ~~~~~~l~~l~~~~~~~~glVlN~~~~~  183 (217)
T cd02035         156 YETERAITELALYGIPVDAVVVNRVLPA  183 (217)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence            44444444443 3466789999998643

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=99.45  E-value=2.3e-12  Score=119.86  Aligned_cols=90  Identities=28%  Similarity=0.377  Sum_probs=66.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc-----CCceEeCCCCCCHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV-----GVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~-----gv~v~~~~~~~~~~~~~~~~   89 (403)
                      |.|.+.+.+||+||||++..||..|+++|.+|.+||+||++|-..+.  ..+...     ++.++..    .....+.++
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~--~~a~~~~~~~~~~~V~~~----~e~~~l~~~   75 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWA--ENAQRPGAWPDRIEVYEA----DELTILEDA   75 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHH--HhccccCCCCCCeeEEec----cchhhHHHH
Confidence            34555567799999999999999999999999999999999987432  222222     2334432    223456677


Q ss_pred             HHHHHhCCCcEEEEeCCCCcc
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~  110 (403)
                      ++.+....||+||||+.|.-+
T Consensus        76 ~e~a~~~~~d~VlvDleG~as   96 (231)
T PF07015_consen   76 YEAAEASGFDFVLVDLEGGAS   96 (231)
T ss_pred             HHHHHhcCCCEEEEeCCCCCc
Confidence            777665679999999999764

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=99.45  E-value=6e-12  Score=118.65  Aligned_cols=143  Identities=23%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh---------h------------HHHHHHhhhccCCce
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---------A------------IDQLVILGEQVGVPV   73 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~---------~------------~~~l~~~~~~~gv~v   73 (403)
                      ++|+|+|. ||+||||+|++||..|++.|++|++||+||+.--         .            .++-..+....|+.+
T Consensus         2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~   81 (243)
T PF06564_consen    2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF   81 (243)
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence            57888888 9999999999999999999999999999975300         0            001112334457788


Q ss_pred             EeCCCCCCH-----------HHHHHHHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH
Q 015657           74 YTAGTEVKP-----------SQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ  141 (403)
Q Consensus        74 ~~~~~~~~~-----------~~~~~~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~  141 (403)
                      ++.+.-...           ...+.+.+..+. ...||+||||||++....   ..   +...  ..|-++.|+.+....
T Consensus        82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~---~~---~al~--~aD~vL~V~~~Da~s  153 (243)
T PF06564_consen   82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPY---TR---QALA--AADLVLVVVNPDAAS  153 (243)
T ss_pred             EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHH---HH---HHHH--hCCeEEEEeCCCHHH
Confidence            876542211           122355566665 468999999999987521   11   1111  137778888774432


Q ss_pred             HHHHHHH-HhhhcCCeeEEEEccCCCCCch
Q 015657          142 EAAALVT-TFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus       142 ~~~~~~~-~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+ ...+ .+.   .-..+++|++|..+.-
T Consensus       154 ~~-~L~q~~l~---~~~~~liNq~~~~s~l  179 (243)
T PF06564_consen  154 HA-RLHQRALP---AGHRFLINQYDPASQL  179 (243)
T ss_pred             HH-HHHHhccc---CCcEEEEeccCccchH
Confidence            11 1111 111   1246999999976543

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

Probab=99.44  E-value=4.6e-12  Score=116.51  Aligned_cols=202  Identities=22%  Similarity=0.230  Sum_probs=126.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh------------hhHHHHHHhhh-------------ccC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP------------AAIDQLVILGE-------------QVG   70 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp------------~~~~~l~~~~~-------------~~g   70 (403)
                      +.|++.|+||.||||++.|++++|++.|+||++|.|||-.-            ...+.++....             -.|
T Consensus         2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G   81 (278)
T COG1348           2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG   81 (278)
T ss_pred             ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence            56899999999999999999999999999999999998643            22333333221             123


Q ss_pred             CceEeCCCCCCHH-------HHHHHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--cc
Q 015657           71 VPVYTAGTEVKPS-------QIAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MT  139 (403)
Q Consensus        71 v~v~~~~~~~~~~-------~~~~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~  139 (403)
                      +.+..++.+...+       -..-+.++++.  .+..|+||.|..|......-.+-     .+.-.++++++|.+.  +.
T Consensus        82 v~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmP-----iReg~AdeiyIVtSge~Ma  156 (278)
T COG1348          82 VKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMP-----IREGYADEIYIVTSGEMMA  156 (278)
T ss_pred             eEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeee-----hhcccCcEEEEEecCchHH
Confidence            4455554332111       11223334331  23469999999987654221110     011124788888887  44


Q ss_pred             HHHHHHHHHH---hhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC--CCCchhhhhhhcCCc
Q 015657          140 GQEAAALVTT---FNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE--PFYPDRMAGRILGMG  212 (403)
Q Consensus       140 g~~~~~~~~~---~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~--~f~~~~~~~r~lG~~  212 (403)
                      ...+.++++.   |..  .+++.|+|.|.-..+.....+....+..|.|+  +...|+.+.+.  .+....++++.+...
T Consensus       157 lYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~l--i~~vPr~~ivq~aE~~~kTvie~~P~s~  234 (278)
T COG1348         157 LYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQL--IHFVPRDNIVQKAELNGKTVIEYAPDSN  234 (278)
T ss_pred             HHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCce--EeeccchHHHHHHHHcCcchhhhCcchh
Confidence            4555555543   443  45689999999887777788888899999998  55555543322  234456666666665


Q ss_pred             cHHHHHHHHHHH
Q 015657          213 DVLSFVEKAQEV  224 (403)
Q Consensus       213 dv~~l~e~~~e~  224 (403)
                      ....|++.+...
T Consensus       235 ~a~~yr~LA~~I  246 (278)
T COG1348         235 QAEEYRELAKKI  246 (278)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=99.44  E-value=2e-12  Score=112.34  Aligned_cols=107  Identities=27%  Similarity=0.368  Sum_probs=74.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      .+.+++||+||||++.+||.+++.+|.+|+++|+|++.+...                                      
T Consensus         3 ~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~--------------------------------------   44 (139)
T cd02038           3 AVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD--------------------------------------   44 (139)
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC--------------------------------------
Confidence            344578999999999999999999999999999997665431                                      


Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHHHHhhh--cCCeeEEEEccCCCCCch
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNI--EIGITGAILTKLDGDSRG  170 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~~  170 (403)
                      ||+||||||+.....  ..    .+.  ...|.+++|+++..  .......++.+..  .....++|+|+++.....
T Consensus        45 yd~VIiD~p~~~~~~--~~----~~l--~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~  113 (139)
T cd02038          45 YDYIIIDTGAGISDN--VL----DFF--LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEG  113 (139)
T ss_pred             CCEEEEECCCCCCHH--HH----HHH--HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHH
Confidence            999999999976432  11    111  12378888888832  2333333333322  233467999999865433

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.44  E-value=3.5e-12  Score=124.95  Aligned_cols=149  Identities=19%  Similarity=0.203  Sum_probs=96.2

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-------HHHhhhccCCceEeCCCC---
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-------LVILGEQVGVPVYTAGTE---   79 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-------l~~~~~~~gv~v~~~~~~---   79 (403)
                      ....++.+|.|+|++|+||||++..|+.++.++|++|.++++|++.+.....       +.......++.+......   
T Consensus        29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (300)
T TIGR00750        29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHL  108 (300)
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccc
Confidence            3445789999999999999999999999999999999999999988653211       111112233333333221   


Q ss_pred             CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEE
Q 015657           80 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA  159 (403)
Q Consensus        80 ~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~Gv  159 (403)
                      ........+++..+...+||+|||||+|..+....       +..  ..|.++++..+..+.+.......+....  .-+
T Consensus       109 ~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~-------i~~--~aD~i~vv~~~~~~~el~~~~~~l~~~~--~iv  177 (300)
T TIGR00750       109 GGLSQATRELILLLDAAGYDVIIVETVGVGQSEVD-------IAN--MADTFVVVTIPGTGDDLQGIKAGLMEIA--DIY  177 (300)
T ss_pred             cchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhH-------HHH--hhceEEEEecCCccHHHHHHHHHHhhhc--cEE
Confidence            11233456667777667999999999996542221       111  1256666666666665555544443222  348


Q ss_pred             EEccCCCCCc
Q 015657          160 ILTKLDGDSR  169 (403)
Q Consensus       160 IlNk~D~~~~  169 (403)
                      |+||+|....
T Consensus       178 v~NK~Dl~~~  187 (300)
T TIGR00750       178 VVNKADGEGA  187 (300)
T ss_pred             EEEcccccch
Confidence            9999997643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.42  E-value=2.8e-12  Score=112.82  Aligned_cols=137  Identities=21%  Similarity=0.240  Sum_probs=81.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH-------HHhhhccCCceEeCCCC---CCHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VILGEQVGVPVYTAGTE---VKPSQIA   86 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l-------~~~~~~~gv~v~~~~~~---~~~~~~~   86 (403)
                      ++.++|++|+||||++.+|+.++.+.|++|+++++|+..+.....+       .......++.+......   ..+....
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT   80 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence            3678899999999999999999999999999999998664431111       11111122222222211   1122334


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH-hhhcCCeeEEEEccCC
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT-FNIEIGITGAILTKLD  165 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~-~~~~~~i~GvIlNk~D  165 (403)
                      .+.++.++..+||+|||||||.....       ..+  ....+.+++|+.+.. -++....+. .-+..  .-+++||+|
T Consensus        81 ~~~~~~~~~~~~D~iiIDtaG~~~~~-------~~~--~~~Ad~~ivv~tpe~-~D~y~~~k~~~~~~~--~~~~~~k~~  148 (148)
T cd03114          81 PEVIRVLDAAGFDVIIVETVGVGQSE-------VDI--ASMADTTVVVMAPGA-GDDIQAIKAGIMEIA--DIVVVNKAD  148 (148)
T ss_pred             HHHHHHHHhcCCCEEEEECCccChhh-------hhH--HHhCCEEEEEECCCc-hhHHHHhhhhHhhhc--CEEEEeCCC
Confidence            55566665568999999998864311       111  112377788877752 233333332 11222  348999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=99.42  E-value=7.9e-13  Score=128.34  Aligned_cols=88  Identities=40%  Similarity=0.611  Sum_probs=75.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G-~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ++++++|+|++||||||++++||.+++.+ | ++|.+|++|+|+.++.+++..++...++++....   .+. .+.+.+.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~-~l~~~l~  268 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPK-ELRKALD  268 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHH-HHHHHHH
Confidence            57899999999999999999999999876 5 9999999999999999999999998898886543   233 3456666


Q ss_pred             HHHhCCCcEEEEeCCC
Q 015657           92 EAKKKNVDVVIVDTAG  107 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg  107 (403)
                      .+  .+||+|||||||
T Consensus       269 ~~--~~~d~vliDt~G  282 (282)
T TIGR03499       269 RL--RDKDLILIDTAG  282 (282)
T ss_pred             Hc--cCCCEEEEeCCC
Confidence            66  479999999997

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.39  E-value=9.1e-13  Score=124.07  Aligned_cols=145  Identities=24%  Similarity=0.284  Sum_probs=88.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------HHHHHhhhccCCceEeCCCCCCH--
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQLVILGEQVGVPVYTAGTEVKP--   82 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------~~l~~~~~~~gv~v~~~~~~~~~--   82 (403)
                      .++..+|.|+|+||+||||++..|+..|.++|++|.++..||..|-+-       -.+..+....++.+-+...--..  
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG  105 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG  105 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence            346789999999999999999999999999999999999998766541       11223445556666555443222  


Q ss_pred             -HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           83 -SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        83 -~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                       .....+++..++..+||+|||+|.|.-+.+.       ++...  +|.+++|+.+..|.+....-....+-.  .-+|+
T Consensus       106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-------~I~~~--aD~~v~v~~Pg~GD~iQ~~KaGimEia--Di~vV  174 (266)
T PF03308_consen  106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV-------DIADM--ADTVVLVLVPGLGDEIQAIKAGIMEIA--DIFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-------HHHTT--SSEEEEEEESSTCCCCCTB-TTHHHH---SEEEE
T ss_pred             ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-------HHHHh--cCeEEEEecCCCccHHHHHhhhhhhhc--cEEEE
Confidence             2345667777777899999999999765322       22222  378888887755543322222222222  23899


Q ss_pred             ccCCCC
Q 015657          162 TKLDGD  167 (403)
Q Consensus       162 Nk~D~~  167 (403)
                      ||.|..
T Consensus       175 NKaD~~  180 (266)
T PF03308_consen  175 NKADRP  180 (266)
T ss_dssp             E--SHH
T ss_pred             eCCChH
Confidence            999943

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.38  E-value=1.2e-11  Score=127.45  Aligned_cols=166  Identities=14%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             CCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH-Hhh---hccCCceEe--CCCCCCHHHH
Q 015657           13 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-ILG---EQVGVPVYT--AGTEVKPSQI   85 (403)
Q Consensus        13 ~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~-~~~---~~~gv~v~~--~~~~~~~~~~   85 (403)
                      .+|+.++|+|. +|+||||+|+.|+++|+++   |..+.+.   |++++... .+.   ...+.++..  .+.+....+.
T Consensus       236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~G---pD~id~~p~~~~~~~~~sp~~a~n~~~d~~~~~~~~  309 (476)
T PRK06278        236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIG---PDVRDIVPSLYLLREKMTKYNSIKIGDRGWSDVEEF  309 (476)
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCC---CChhhcCCcceecccccCChHHHhhcCCcccCHHHH
Confidence            44667899999 9999999999999999976   6655542   44433100 000   111111122  1223333333


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCccccH--H-hHHHHHHHhhhcCCceEEEEEecccH--HHHHHHH---HHh--hhcCC
Q 015657           86 AKQGLEEAKKKNVDVVIVDTAGRLQIDK--A-MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV---TTF--NIEIG  155 (403)
Q Consensus        86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~--~-l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~---~~~--~~~~~  155 (403)
                      +.    .++..++|++||+++|++....  . ......++++.++ .++++|+|+..+  .++...+   ..+  ...++
T Consensus       310 ~~----~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~  384 (476)
T PRK06278        310 LE----FVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVK  384 (476)
T ss_pred             HH----HHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCc
Confidence            33    3333478999999999887531  1 1124456777776 799999999433  4444433   334  45788


Q ss_pred             eeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          156 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       156 i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      +.|||+|++....+...+..+.+.+|+||  +|. ++
T Consensus       385 i~GVIlN~v~~~~~~~~~~~~le~~gvpV--LG~-~~  418 (476)
T PRK06278        385 VEGIILNKVYNMEIFEKVKKIAENSNINL--IGV-GK  418 (476)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHhcCCCE--EEe-cc
Confidence            99999999998777777778888899999  888 44

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=99.36  E-value=8e-12  Score=103.59  Aligned_cols=97  Identities=27%  Similarity=0.303  Sum_probs=66.5

Q ss_pred             EEE-EcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           18 ILL-AGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        18 I~v-~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      |++ .++||+||||++.+||..+++. |++|+++|+|++++.                                      
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~--------------------------------------   43 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD--------------------------------------   43 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence            444 4669999999999999999998 999999999988654                                      


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHH---HHhhhc-CCeeEEEEcc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV---TTFNIE-IGITGAILTK  163 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~---~~~~~~-~~i~GvIlNk  163 (403)
                         |+||||||+......      ..+.  ...|.+++|+++...  ..+....   +..... ..-..+|+||
T Consensus        44 ---D~IIiDtpp~~~~~~------~~~l--~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 ---DYVVVDLGRSLDEVS------LAAL--DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             ---CEEEEeCCCCcCHHH------HHHH--HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence               999999999875311      1111  124788888887322  2333333   222222 2345678875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=99.35  E-value=9.2e-12  Score=102.26  Aligned_cols=94  Identities=30%  Similarity=0.372  Sum_probs=66.3

Q ss_pred             EEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           18 ILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        18 I~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      |++. .+||+||||++.+||.+|+++|.+|+++|+|++                                          
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~------------------------------------------   39 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ------------------------------------------   39 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC------------------------------------------
Confidence            4555 469999999999999999999999999999966                                          


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHH------HHhhhcCCeeEEEEc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALV------TTFNIEIGITGAILT  162 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~------~~~~~~~~i~GvIlN  162 (403)
                       ||+||||+|+......  .    .+..  ..+.+++++++..  ...+.+..      +.......+.++|+|
T Consensus        40 -~d~viiD~p~~~~~~~--~----~~l~--~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~vv~n  104 (104)
T cd02042          40 -YDYIIIDTPPSLGLLT--R----NALA--AADLVLIPVQPSPLDLDGLEKLLETLILEDRLNPDLDILGILPT  104 (104)
T ss_pred             -CCEEEEeCcCCCCHHH--H----HHHH--HCCEEEEeccCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence             8999999999875311  1    1111  2478888888732  22222222      223445567778776

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=99.30  E-value=1e-10  Score=109.31  Aligned_cols=174  Identities=20%  Similarity=0.276  Sum_probs=100.5

Q ss_pred             EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEec---cCCChhhHHHHHHhhhccCCc-------eEeCCCCCC-----
Q 015657           18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG---DVYRPAAIDQLVILGEQVGVP-------VYTAGTEVK-----   81 (403)
Q Consensus        18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~---D~~rp~~~~~l~~~~~~~gv~-------v~~~~~~~~-----   81 (403)
                      ++|+|. +|+|||++++.|+.+|+++|++|.+...   .+.......+...+....+++       .+.......     
T Consensus         2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~   81 (222)
T PRK00090          2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA   81 (222)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence            677888 9999999999999999999999987651   111100000111111111211       011111111     


Q ss_pred             -------HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-h
Q 015657           82 -------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-N  151 (403)
Q Consensus        82 -------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~  151 (403)
                             ..+.+.+.++.+. ++||+|||||+|++...........++...+. .++++|+++..+  .++...+..+ .
T Consensus        82 ~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~-~pvilV~~~~~~~i~~~~~~i~~l~~  159 (222)
T PRK00090         82 ALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQ-LPVILVVGVKLGCINHTLLTLEAIRA  159 (222)
T ss_pred             HHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhC-CCEEEEECCCCcHHHHHHHHHHHHHH
Confidence                   1123455566554 78999999999986432111112234444454 788999988443  2222333323 2


Q ss_pred             hcCCeeEEEEccCCCC-Cc--hhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657          152 IEIGITGAILTKLDGD-SR--GGAALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       152 ~~~~i~GvIlNk~D~~-~~--~~~~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      ..+++.|+|+|+++.. ..  ......+.+.++.|+  +|..+..+.
T Consensus       160 ~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~gi~v--lg~ip~~~~  204 (222)
T PRK00090        160 RGLPLAGWVANGIPPEPGLRHAENLATLERLLPAPL--LGELPYLAE  204 (222)
T ss_pred             CCCCeEEEEEccCCCcchhHHHHHHHHHHHHcCCCe--EEecCCCCC
Confidence            3677899999999865 22  234456677788888  888777543

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=99.28  E-value=7.9e-12  Score=116.98  Aligned_cols=93  Identities=25%  Similarity=0.329  Sum_probs=53.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH---HhhhccCCc----eE-eCCC-----CCC-H
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---ILGEQVGVP----VY-TAGT-----EVK-P   82 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~---~~~~~~gv~----v~-~~~~-----~~~-~   82 (403)
                      |++.+|+||+||||+|.+||.+|++.|++|.++|+|.+.|.....+.   ......+++    .+ ....     ... +
T Consensus         3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~~   82 (261)
T PF09140_consen    3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGEN   82 (261)
T ss_dssp             EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-HH
T ss_pred             EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCcc
Confidence            34455999999999999999999999999999999999877643321   111111222    11 1111     111 1


Q ss_pred             H--HHHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657           83 S--QIAKQGLEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        83 ~--~~~~~~l~~~~~~~~D~VIIDtpg~l~  110 (403)
                      .  ..+.+++..+. .++||+||||||...
T Consensus        83 ~~~~~L~q~l~~l~-~~~DfLVID~PGtd~  111 (261)
T PF09140_consen   83 VEDKRLEQALADLE-GDLDFLVIDTPGTDD  111 (261)
T ss_dssp             HHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred             hhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence            1  24566677764 689999999998754

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>PRK13768 GTPase; Provisional

Probab=99.27  E-value=1.1e-10  Score=111.67  Aligned_cols=152  Identities=22%  Similarity=0.288  Sum_probs=84.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-------HHHHHHhhh---ccCC----ceEeCCCCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGE---QVGV----PVYTAGTEV   80 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-------~~~l~~~~~---~~gv----~v~~~~~~~   80 (403)
                      +.+++++|++||||||++.+++.+++.+|++|++|+.|+.....       +..+....+   ..++    .++... . 
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~-~-   79 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASV-D-   79 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHH-H-
Confidence            46899999999999999999999999999999999999864211       111101110   1010    011000 0 


Q ss_pred             CHHHHHHHHHHHHHhCCCcEEEEeCCCCcccc--HHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHH-----h
Q 015657           81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTT-----F  150 (403)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d--~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~-----~  150 (403)
                      .....+......+...+.|++||||||.....  ......+........++.+++|+|+...   .+.......     .
T Consensus        80 ~~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~  159 (253)
T PRK13768         80 LLLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL  159 (253)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH
Confidence            01122233444454456799999999976531  1111111111111115788999999432   222221111     1


Q ss_pred             hhcCCeeEEEEccCCCCCc
Q 015657          151 NIEIGITGAILTKLDGDSR  169 (403)
Q Consensus       151 ~~~~~i~GvIlNk~D~~~~  169 (403)
                      ....+ .-+|+||+|....
T Consensus       160 ~~~~~-~i~v~nK~D~~~~  177 (253)
T PRK13768        160 RLGLP-QIPVLNKADLLSE  177 (253)
T ss_pred             HcCCC-EEEEEEhHhhcCc
Confidence            22222 3489999997544

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=99.25  E-value=1.1e-10  Score=114.57  Aligned_cols=42  Identities=40%  Similarity=0.577  Sum_probs=37.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      .++++++|+|||||||+|+++|.+++++|++|++++.||.++
T Consensus         1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~   42 (305)
T PF02374_consen    1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS   42 (305)
T ss_dssp             -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred             CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence            368999999999999999999999999999999999998753

...

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=99.24  E-value=1.4e-10  Score=109.40  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhhhcCCe-eEEEEccC
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFNIEIGI-TGAILTKL  164 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~~~~~i-~GvIlNk~  164 (403)
                      ......++ +..|++|||||++...  .++      ..+...|-+++|..++ .+.+-...+...-+.+++ .++|+||.
T Consensus       154 ~~~kk~a~-E~~~~~IIDsaaG~gC--pVi------~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~  224 (284)
T COG1149         154 TALKKHAK-ELADLLIIDSAAGTGC--PVI------ASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRY  224 (284)
T ss_pred             HHHHHhhh-hhcceeEEecCCCCCC--hHH------HhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecC
Confidence            33333443 3379999999999875  222      2233458889998884 343333333223333443 77999999


Q ss_pred             CCCCchhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657          165 DGDSRGGAALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       165 D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      +.-..  .++...+..|.|+  ++..|..++
T Consensus       225 ~~g~s--~ie~~~~e~gi~i--l~~IPyd~~  251 (284)
T COG1149         225 NLGDS--EIEEYCEEEGIPI--LGEIPYDKD  251 (284)
T ss_pred             CCCch--HHHHHHHHcCCCe--eEECCcchh
Confidence            43222  5778888999999  777766555

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.24  E-value=8.4e-11  Score=113.45  Aligned_cols=217  Identities=17%  Similarity=0.167  Sum_probs=116.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |+++|++|+||||++.+|......-. ++.-++..   ....+.. ......|+.+...             ...+.+.+
T Consensus         2 v~ivGh~~~GKTtL~~~Ll~~~g~~~-~~g~v~~~---~~~~D~~-~~E~~rgiti~~~-------------~~~~~~~~   63 (270)
T cd01886           2 IGIIAHIDAGKTTTTERILYYTGRIH-KIGEVHGG---GATMDFM-EQERERGITIQSA-------------ATTCFWKD   63 (270)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCc-ccccccCC---ccccCCC-ccccCCCcCeecc-------------EEEEEECC
Confidence            78999999999999999986553211 11111100   0000000 0111223322211             11112467


Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC--chhH
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS--RGGA  172 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~--~~~~  172 (403)
                      +.+++|||||...+...    ......  ..+.+++|+|+..+  ......+.... ...++ -+++||+|...  ....
T Consensus        64 ~~i~liDTPG~~df~~~----~~~~l~--~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~~~~~  136 (270)
T cd01886          64 HRINIIDTPGHVDFTIE----VERSLR--VLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGADFFRV  136 (270)
T ss_pred             EEEEEEECCCcHHHHHH----HHHHHH--HcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCCHHHH
Confidence            89999999997643222    222222  23788999999554  11222222222 22333 48999999753  2234


Q ss_pred             HHHHHHHhCCCeE----EeeccCCcCC---CC-----CCCch-----hhhhhhcC-CccHHHHHHHHHHHhhHhHHHHHH
Q 015657          173 ALSVKEVSGKPIK----LVGRGERMED---LE-----PFYPD-----RMAGRILG-MGDVLSFVEKAQEVMQQEDAEEMQ  234 (403)
Q Consensus       173 ~~~~~~~~g~pi~----fig~ge~v~~---l~-----~f~~~-----~~~~r~lG-~~dv~~l~e~~~e~~~~~~~~~~~  234 (403)
                      ...+.+.++..+.    +++....+..   +-     .|...     ...+-... ..++.++.+.+.|.+.+.+++.+.
T Consensus       137 ~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e  216 (270)
T cd01886         137 VEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELME  216 (270)
T ss_pred             HHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5666666665422    2333222211   10     01000     00000000 123456777777777777787888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657          235 KKIMSANFDFNDFLKQTRTVARMGS  259 (403)
Q Consensus       235 ~~~~~~~~~~edl~~ql~~~~k~g~  259 (403)
                      +++..++++.+++.+.++.....|.
T Consensus       217 ~yl~~~~~~~~el~~~l~~~~~~~~  241 (270)
T cd01886         217 KYLEGEEITEEEIKAAIRKGTIANK  241 (270)
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCc
Confidence            8888889999999999999998884

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.21  E-value=8.1e-10  Score=106.35  Aligned_cols=159  Identities=18%  Similarity=0.254  Sum_probs=89.7

Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCCCc--h
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDSR--G  170 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~~~--~  170 (403)
                      +.++++.||||||...+....    .....  .++.+++|+|+..+.  ............-....+++||+|....  .
T Consensus        61 ~~~~~i~liDtPG~~~f~~~~----~~~l~--~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~  134 (268)
T cd04170          61 WKGHKINLIDTPGYADFVGET----RAALR--AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD  134 (268)
T ss_pred             ECCEEEEEEECcCHHHHHHHH----HHHHH--HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence            367899999999975322222    22222  348899999996542  1122222222111234589999996543  2


Q ss_pred             hHHHHHHHHhCCCeEE----eeccCCcCCCC--------CCCchhhhhhhcCC-----ccHHHHHHHHHHHhhHhHHHHH
Q 015657          171 GAALSVKEVSGKPIKL----VGRGERMEDLE--------PFYPDRMAGRILGM-----GDVLSFVEKAQEVMQQEDAEEM  233 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~f----ig~ge~v~~l~--------~f~~~~~~~r~lG~-----~dv~~l~e~~~e~~~~~~~~~~  233 (403)
                      .....+.+.++.++..    ++.++.+..+.        .|.+... .....+     ..+.++.+.+.|.+.+.+++.+
T Consensus       135 ~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~  213 (268)
T cd04170         135 KTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAP-SEEIEIPEELKEEVAEAREELLEAVAETDDELM  213 (268)
T ss_pred             HHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCc-ceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence            3445666777876542    22333321111        0100000 000011     1123455566666677777777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 015657          234 QKKIMSANFDFNDFLKQTRTVARMGSM  260 (403)
Q Consensus       234 ~~~~~~~~~~~edl~~ql~~~~k~g~~  260 (403)
                      .+++..++++.+++.+.++.....|.+
T Consensus       214 e~yl~~~~~~~~~l~~~l~~~~~~~~~  240 (268)
T cd04170         214 EKYLEGGELTEEELHAGLRRALRAGLL  240 (268)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHhCCE
Confidence            888888899999999999999988764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.18  E-value=6.6e-10  Score=105.25  Aligned_cols=201  Identities=16%  Similarity=0.176  Sum_probs=111.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd-~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      |++.|++|+||||++..|......-. +..-++ .+.. .+.. .   .....++.+...             ...+.++
T Consensus         2 i~i~G~~~~GKTtL~~~ll~~~g~i~-~~g~v~~~~~~-~D~~-~---~e~~rg~ti~~~-------------~~~~~~~   62 (237)
T cd04168           2 IGILAHVDAGKTTLTESLLYTSGAIR-KLGSVDKGTTR-TDTM-E---LERQRGITIFSA-------------VASFQWE   62 (237)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCcc-ccccccCCccc-CCCc-h---hHhhCCCceeee-------------eEEEEEC
Confidence            78999999999999999987543210 100011 1100 0000 0   011122222111             0111246


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHH-hh-hcCCeeEEEEccCCCCC--chh
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTT-FN-IEIGITGAILTKLDGDS--RGG  171 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~-~~-~~~~i~GvIlNk~D~~~--~~~  171 (403)
                      ++.+.++||||...+......    ...  ..+.+++|+|+..+ +........ .. ...+ .-+++||+|...  ...
T Consensus        63 ~~~i~liDTPG~~~f~~~~~~----~l~--~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~~~  135 (237)
T cd04168          63 DTKVNLIDTPGHMDFIAEVER----SLS--VLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGADLEK  135 (237)
T ss_pred             CEEEEEEeCCCccchHHHHHH----HHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCCHHH
Confidence            789999999998654322222    112  23888999999554 211222222 22 2333 348999999653  445


Q ss_pred             HHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 015657          172 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT  251 (403)
Q Consensus       172 ~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl~~ql  251 (403)
                      .+.++.+.++.++..+-. |...+    ...          ...++.+.+.|.+.+.+++.|.+++..++++.+++++.+
T Consensus       136 ~~~~i~~~~~~~~~~~~~-p~~~~----~~~----------~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l  200 (237)
T cd04168         136 VYQEIKEKLSSDIVPMQK-VGLAP----NIC----------ETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNEL  200 (237)
T ss_pred             HHHHHHHHHCCCeEEEEC-CcEee----eee----------eeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHH
Confidence            667788888876543221 11100    000          011222445555556677778888888899999999999


Q ss_pred             HHHHhcCC
Q 015657          252 RTVARMGS  259 (403)
Q Consensus       252 ~~~~k~g~  259 (403)
                      +.....|.
T Consensus       201 ~~~~~~~~  208 (237)
T cd04168         201 SARIAKRK  208 (237)
T ss_pred             HHHHHhCC
Confidence            99998884

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG1159 Era GTPase [General function prediction only]

Probab=99.16  E-value=3.3e-10  Score=108.37  Aligned_cols=190  Identities=17%  Similarity=0.223  Sum_probs=116.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +.-.++++|.|.+||||+..+|.      |.|+.+++--++...        ....|+.  .                  
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~k~QTTR--------~~I~GI~--t------------------   50 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALV------GQKISIVSPKPQTTR--------NRIRGIV--T------------------   50 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHh------cCceEeecCCcchhh--------hheeEEE--E------------------
Confidence            34568999999999999999999      999999885533221        1222222  1                  


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHH--HhhhcCCceEEEEEeccc--HHHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~--i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                       .+++.+|+|||||.+.....+...+..  ....-..|-+++|+|+..  +.....++..+...-...-+++||+|....
T Consensus        51 -~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~  129 (298)
T COG1159          51 -TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP  129 (298)
T ss_pred             -cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence             257899999999988653333222222  222234688899999943  333333444444321234489999998766


Q ss_pred             hhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHh-------hHhHHHHHHHHHhcCCC
Q 015657          170 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-------QQEDAEEMQKKIMSANF  242 (403)
Q Consensus       170 ~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~-------~~~~~~~~~~~~~~~~~  242 (403)
                      ...++.+.+....-..|.             .--.+|...|.+ +..|++.+.+.+       +++..++..+++...|+
T Consensus       130 ~~~l~~~~~~~~~~~~f~-------------~ivpiSA~~g~n-~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEi  195 (298)
T COG1159         130 KTVLLKLIAFLKKLLPFK-------------EIVPISALKGDN-VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEI  195 (298)
T ss_pred             HHHHHHHHHHHHhhCCcc-------------eEEEeeccccCC-HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHH
Confidence            654444444433222111             111112223332 445555555544       67888888999999999


Q ss_pred             CHHHHHHHHH
Q 015657          243 DFNDFLKQTR  252 (403)
Q Consensus       243 ~~edl~~ql~  252 (403)
                      .+|.++..++
T Consensus       196 iREk~~~~l~  205 (298)
T COG1159         196 IREKLLLLLR  205 (298)
T ss_pred             HHHHHHHhcc
Confidence            9998887665

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=99.16  E-value=9.2e-10  Score=101.15  Aligned_cols=175  Identities=25%  Similarity=0.312  Sum_probs=101.3

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh---hhHHHHHHhhhccC----CceEeCCCCCCHHHH--
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---AAIDQLVILGEQVG----VPVYTAGTEVKPSQI--   85 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp---~~~~~l~~~~~~~g----v~v~~~~~~~~~~~~--   85 (403)
                      +.++|+|. +|+|||+++..|+.+|.++|.+|.++..=..+.   ...+.+........    +..+.......|.-.  
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPASPHLAAE   80 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-HHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHHHhCCCcccccccccccCcccCHHHHhh
Confidence            35788888 999999999999999999999998654221111   11222221111110    011111222222211  


Q ss_pred             -------HHHH-HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcC
Q 015657           86 -------AKQG-LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEI  154 (403)
Q Consensus        86 -------~~~~-l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~  154 (403)
                             +.+. ++.+ ..++|++|||++|+............++.+.++ .++++|+++..+  .++...+..+ ....
T Consensus        81 ~~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~~~~~~~~g~  158 (199)
T PF13500_consen   81 LEGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLTIEALKQRGI  158 (199)
T ss_dssp             HHT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHHHHHHHCTTS
T ss_pred             ccCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence                   1122 2333 368999999999988642111122245555665 689999998443  3443333433 3567


Q ss_pred             CeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCC
Q 015657          155 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE  197 (403)
Q Consensus       155 ~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~  197 (403)
                      ++.|+|+|+++..   .....+.+.++.|+  +|..|...++.
T Consensus       159 ~v~GvI~N~~~~~---~~~~~l~~~~~i~v--lg~iP~~~~L~  196 (199)
T PF13500_consen  159 RVLGVILNRVPEP---ENLEALREKSGIPV--LGVIPEDPDLS  196 (199)
T ss_dssp             -EEEEEEEECTCC---HHHHHHHHHHCCEE--CE---SSTT--
T ss_pred             CEEEEEEECCCCH---HHHHHHHHhCCCCE--EEECCCCcccc
Confidence            8999999998665   46777888889888  88888776654

...

>TIGR00347 bioD dethiobiotin synthase

Probab=99.14  E-value=2.5e-10  Score=101.78  Aligned_cols=140  Identities=26%  Similarity=0.272  Sum_probs=78.1

Q ss_pred             EEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh---h-HHHHHHh-h--hccC--CceEeCCCCCCH-------
Q 015657           20 LAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA---A-IDQLVIL-G--EQVG--VPVYTAGTEVKP-------   82 (403)
Q Consensus        20 v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~---~-~~~l~~~-~--~~~g--v~v~~~~~~~~~-------   82 (403)
                      |+|. +|+||||++.+|+.+|+++|++|.++........   . .+.+... .  ....  .++.... ...|       
T Consensus         2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~   80 (166)
T TIGR00347         2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDWDEVNPYAFAL-PLSPHIAADQE   80 (166)
T ss_pred             eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCchhccCCeeeCC-CCChHHHHHHh
Confidence            5666 9999999999999999999999998742221111   0 1111100 0  0000  0111110 1111       


Q ss_pred             -----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcC
Q 015657           83 -----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEI  154 (403)
Q Consensus        83 -----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~  154 (403)
                           .+.+.+.+..+. ++||+||||+||++...........++...+. +++++|+++..+  .++......+. ..+
T Consensus        81 ~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~-~~vilV~~~~~~~~~~~~~~~~~l~~~~~  158 (166)
T TIGR00347        81 GRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQ-LPVILVVRVKLGTINHTLLTVEHARQTGL  158 (166)
T ss_pred             CCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHhC-CCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence                 112345556654 78999999999876531111111233444444 789999998433  23333333443 368


Q ss_pred             CeeEEEEc
Q 015657          155 GITGAILT  162 (403)
Q Consensus       155 ~i~GvIlN  162 (403)
                      ++.|+|+|
T Consensus       159 ~i~gvv~N  166 (166)
T TIGR00347       159 TLAGVILN  166 (166)
T ss_pred             CeEEEEeC
Confidence            89999997

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=99.14  E-value=2.9e-10  Score=95.87  Aligned_cols=89  Identities=27%  Similarity=0.369  Sum_probs=61.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCce-EeCC--------CCCCHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV-YTAG--------TEVKPSQIAKQ   88 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v-~~~~--------~~~~~~~~~~~   88 (403)
                      |+++|++|+||||++.+|+.+|+++|++|+++|+|+  +...+.+....  .+... +..+        .........++
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~--~~~~~~i~~g~~~~~~~g~~~~~n~~~~~   77 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV--GEIKLLLVMGMGRPGGEGCYCPENALLNA   77 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhcc--CCceEEEEecccccCCCCCEehhhHHHHH
Confidence            789999999999999999999999999999999998  33333332111  11111 1111        11112236677


Q ss_pred             HHHHHHhCCCcEEEEeCCCCcc
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~  110 (403)
                      .+.++...++|++|+||++++.
T Consensus        78 ~l~~~~~~~~~~vivDt~ag~e   99 (116)
T cd02034          78 LLRHLVLTRDEQVVVDTEAGLE   99 (116)
T ss_pred             HHHHeEccCCCEEEEecHHHHH
Confidence            7777655789999999999873

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.10  E-value=2.7e-10  Score=111.98  Aligned_cols=41  Identities=37%  Similarity=0.557  Sum_probs=38.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .++++++|+|||||||+++++|.++++.|++|++|..||.+
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh   42 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH   42 (322)
T ss_pred             cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence            58999999999999999999999999999999999999865

>PRK00784 cobyric acid synthase; Provisional

Probab=99.09  E-value=3.6e-09  Score=110.33  Aligned_cols=177  Identities=20%  Similarity=0.282  Sum_probs=103.5

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEec---------cCCC--hhhHHHHHHhh------hccCCceEeC-
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG---------DVYR--PAAIDQLVILG------EQVGVPVYTA-   76 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~---------D~~r--p~~~~~l~~~~------~~~gv~v~~~-   76 (403)
                      +.++|+|. +|||||++++.|+++|+++|++|..+..         .+..  +.....+....      ...+.-++.. 
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~~~~~   82 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLKPQ   82 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEEecCC
Confidence            35888999 9999999999999999999999885543         0000  00111111000      0111111100 


Q ss_pred             ----------CC-------------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCcc-c---cHHhHHHHHHHhhhcCCc
Q 015657           77 ----------GT-------------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ-I---DKAMMDELKDVKRVLNPT  129 (403)
Q Consensus        77 ----------~~-------------~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~-~---d~~l~~el~~i~~~~~~~  129 (403)
                                +.             .....+.+.+.+..+. .+||++|||++|++. .   +..  ....++++.++ .
T Consensus        83 sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~--~~~~dlak~l~-~  158 (488)
T PRK00784         83 SDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRD--IANMGFAEAAD-A  158 (488)
T ss_pred             CCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCC--chhHHHHHHcC-C
Confidence                      00             1112233455666553 689999999997764 1   111  12346666666 7


Q ss_pred             eEEEEEecccH---HHHHHHHHHhhh--cCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcCCCCC
Q 015657          130 EVLLVVDAMTG---QEAAALVTTFNI--EIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDLEP  198 (403)
Q Consensus       130 ~vllVvda~~g---~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~~l~~  198 (403)
                      ++++|+++..+   ..+......+..  ...+.|+|+|+++.+..  ......+.+.++.|+  +|..|..+.+..
T Consensus       159 PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gipv--LG~iP~~~~L~~  232 (488)
T PRK00784        159 PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVPV--LGVLPYLDDLRL  232 (488)
T ss_pred             CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcCCCc
Confidence            99999998443   222222233332  35899999999986521  122233555678888  888888776543

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=99.07  E-value=5.4e-09  Score=108.56  Aligned_cols=173  Identities=21%  Similarity=0.299  Sum_probs=101.2

Q ss_pred             EEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccC-------CCh---hhHHHHH-Hhh------hccCCceEeC---
Q 015657           18 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDV-------YRP---AAIDQLV-ILG------EQVGVPVYTA---   76 (403)
Q Consensus        18 I~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~-------~rp---~~~~~l~-~~~------~~~gv~v~~~---   76 (403)
                      |+|+|. ++||||++|+.|++.|+++|++|..+..-.       ...   ....++. ..+      ...+.-.+..   
T Consensus         1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~   80 (475)
T TIGR00313         1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN   80 (475)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence            578899 999999999999999999999999665421       000   0011111 110      1111111211   


Q ss_pred             --------CCCC--------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccc-c---HHhHHHHHHHhhhcCCce
Q 015657           77 --------GTEV--------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI-D---KAMMDELKDVKRVLNPTE  130 (403)
Q Consensus        77 --------~~~~--------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~-d---~~l~~el~~i~~~~~~~~  130 (403)
                              +...              ...+.+++.+..+. .+||+||||++|++.. +   ..  ....++.+.+. .+
T Consensus        81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d--~s~~~lA~~l~-ap  156 (475)
T TIGR00313        81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRD--LANMRIAELAN-AD  156 (475)
T ss_pred             CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCC--chHHHHHHHhC-CC
Confidence                    1000              01233455566653 6899999999998753 0   11  11234444454 68


Q ss_pred             EEEEEecccHH---HHHHHHHHhhh--cCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcCCC
Q 015657          131 VLLVVDAMTGQ---EAAALVTTFNI--EIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDL  196 (403)
Q Consensus       131 vllVvda~~g~---~~~~~~~~~~~--~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~~l  196 (403)
                      +++|+|...+.   .+...+..+..  ...+.|+|+|+++.+..  ...+..+.+.++.|+  +|..+..+++
T Consensus       157 VILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~gipv--LG~ip~~~~l  227 (475)
T TIGR00313       157 AILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELTGIPV--LGVLPYDENL  227 (475)
T ss_pred             EEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhhCCCE--EEEecCCCcC
Confidence            89999986542   22222233333  26789999999987532  123344456679998  8888777664

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=99.05  E-value=1.4e-09  Score=95.54  Aligned_cols=115  Identities=24%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH---------------------------HHHHhhh
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID---------------------------QLVILGE   67 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~---------------------------~l~~~~~   67 (403)
                      ++|+|+|+ +|+||||+|.+||..|++.|++|++||+|.+.+....                           .+.....
T Consensus         1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~   80 (157)
T PF13614_consen    1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY   80 (157)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence            57888886 9999999999999999999999999999987654311                           1111111


Q ss_pred             ---ccCCceEeCCCCCCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657           68 ---QVGVPVYTAGTEVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM  138 (403)
Q Consensus        68 ---~~gv~v~~~~~~~~~~~-----~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~  138 (403)
                         ..++.+++......+..     .+...++.++ +.||+||||+|+........     .+..  ..|.+++|+.+.
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~~-----~~l~--~~D~ii~v~~~~  151 (157)
T PF13614_consen   81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDTQ-----AVLE--LADKIILVVRPD  151 (157)
T ss_dssp             EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHHH-----HHHT--THSEEEEEEETT
T ss_pred             eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHHH-----HHHH--HCCEEEEEECCC
Confidence               12344444433333332     3567777775 58999999999987632210     1111  238889988874

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.04  E-value=1e-09  Score=103.36  Aligned_cols=156  Identities=20%  Similarity=0.247  Sum_probs=85.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC-----hhhH---------HHHHHhhhccCCceE-eCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----PAAI---------DQLVILGEQVGVPVY-TAG   77 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r-----p~~~---------~~l~~~~~~~gv~v~-~~~   77 (403)
                      ++|.+|+++|..||||||++..|-.++..++.+..+|.+||.-     |+.+         +-++...-..+-.+. ...
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN   96 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN   96 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence            4678899999999999999999999999999899999999631     1111         111111110000000 000


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccc--cHHhHHHHHHHhhhcCCceEEEEEecccH---HHHH-HHH----
Q 015657           78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAA-ALV----  147 (403)
Q Consensus        78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~--d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~-~~~----  147 (403)
                      ......+.+...++.. .+.+|+|||||||.+..  +.+.-.-+.+.....-|.-+++|+|....   .... +.+    
T Consensus        97 LF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   97 LFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence            1111122233445554 36799999999999864  22111111222233346778889997211   1111 111    


Q ss_pred             HHhhhcCCeeEEEEccCCCCCch
Q 015657          148 TTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus       148 ~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      --+...++. -+++||.|...+.
T Consensus       176 ilyktklp~-ivvfNK~Dv~d~~  197 (366)
T KOG1532|consen  176 ILYKTKLPF-IVVFNKTDVSDSE  197 (366)
T ss_pred             HHHhccCCe-EEEEecccccccH
Confidence            112333433 3778888865443

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=99.03  E-value=1.1e-08  Score=95.26  Aligned_cols=176  Identities=25%  Similarity=0.290  Sum_probs=107.7

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEecc---CCChhhHHHHHHhhhccCCc-------eEeCCCCCCHHH
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD---VYRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQ   84 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D---~~rp~~~~~l~~~~~~~gv~-------v~~~~~~~~~~~   84 (403)
                      +.++|+|. .|+|||++++.|+.+|+.+|++|.....=   ....+..++...+....+++       .|.......|.-
T Consensus         3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sPhl   82 (223)
T COG0132           3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSPHL   82 (223)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCCCchHHHHHHhcCCCcccccccceecCCCCCcHH
Confidence            56899999 99999999999999999999999854311   11110001222222222222       222222223322


Q ss_pred             ------------HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHH-H
Q 015657           85 ------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT-T  149 (403)
Q Consensus        85 ------------~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~-~  149 (403)
                                  .+...+..+. ..||+|||+++|++...-.--..+.++..... .++++|+....|  .++.-.++ .
T Consensus        83 Aa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~-lpvILV~~~~LGtINHtlLt~eal  160 (223)
T COG0132          83 AAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQ-LPVILVVGIKLGTINHTLLTVEAL  160 (223)
T ss_pred             HHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcC-CCEEEEecCCccHHHHHHHHHHHH
Confidence                        2344444554 58999999999998762111133455556555 889999988443  33433333 3


Q ss_pred             hhhcCCeeEEEEccCCCCCchhH--HHHHHHHhCCCeEEeeccCCcCC
Q 015657          150 FNIEIGITGAILTKLDGDSRGGA--ALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       150 ~~~~~~i~GvIlNk~D~~~~~~~--~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      -...+++.|+|+|.+........  ...+.+.++.|+  +|..+...+
T Consensus       161 ~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~--~g~~p~~~~  206 (223)
T COG0132         161 RARGLPLAGWVANGINPELDHYAEINATLLKRIGAPL--LGIIPYLPE  206 (223)
T ss_pred             HHCCCCEEEEEEccCCCchhHHHHHHHHHHHhcCCCc--cccccCCcc
Confidence            45788999999999975533222  235677788888  666666544

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=99.01  E-value=8.5e-09  Score=89.09  Aligned_cols=126  Identities=24%  Similarity=0.231  Sum_probs=85.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      +.++| .|+||||++..|+..|.++|.+|..+.....                                           
T Consensus         3 ~~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-------------------------------------------   38 (134)
T cd03109           3 GFGTG-TDIGKTVATAILARALKEKGYRVAPLKPVQT-------------------------------------------   38 (134)
T ss_pred             EEeCC-CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC-------------------------------------------
Confidence            34556 5599999999999999999999997765522                                           


Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCCc--hhH
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR--GGA  172 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~~--~~~  172 (403)
                      +|++|||++|++......-....++.+.++ .++++|++...+  .++...+... ...+.+.|+|.|+++....  ...
T Consensus        39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~  117 (134)
T cd03109          39 YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLN  117 (134)
T ss_pred             CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhh
Confidence            699999999988742111112344555555 678899877433  3333333322 3467789999999986532  233


Q ss_pred             HHHHHHHhCCCeEEeecc
Q 015657          173 ALSVKEVSGKPIKLVGRG  190 (403)
Q Consensus       173 ~~~~~~~~g~pi~fig~g  190 (403)
                      ...+.+.++.|+  +|..
T Consensus       118 ~~~i~~~~gip~--LG~I  133 (134)
T cd03109         118 VETIERLTGIPV--LGIV  133 (134)
T ss_pred             HHHHHHhcCCCE--EEeC
Confidence            566778888887  6653

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=99.00  E-value=1.7e-08  Score=95.26  Aligned_cols=174  Identities=18%  Similarity=0.199  Sum_probs=100.4

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-----hh-HHHHHHhhhccCCc---------eEeCC---
Q 015657           17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----AA-IDQLVILGEQVGVP---------VYTAG---   77 (403)
Q Consensus        17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-----~~-~~~l~~~~~~~gv~---------v~~~~---   77 (403)
                      .++|+|. +|+|||++++.|+.+|.++|++|.++..=..+.     .. ..+...+....+.+         .+...   
T Consensus         4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~   83 (231)
T PRK12374          4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS   83 (231)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence            5888888 999999999999999999999998765321110     00 00111111222211         01110   


Q ss_pred             ----CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-
Q 015657           78 ----TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-  150 (403)
Q Consensus        78 ----~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-  150 (403)
                          ...+. +.+.+.++.+. .+||+||||++|++...-.-...+.++..... .++++|+....+.  ++.-....+ 
T Consensus        84 ~~~~~~i~~-~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~-~pvilV~~~~lg~in~~lLt~~~l~  160 (231)
T PRK12374         84 VAHSCPINY-TLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQ-LPVLMVVGIQEGCINHALLTAQAIA  160 (231)
T ss_pred             HHcCCcCCH-HHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhC-CCEEEEECCCcChHHHHHHHHHHHH
Confidence                01111 22344555554 78999999999977642211111233444443 7889999775442  332223333 


Q ss_pred             hhcCCeeEEEEccCCCCCch--hHHHHHHHHhCCCeEEeeccCCcCC
Q 015657          151 NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       151 ~~~~~i~GvIlNk~D~~~~~--~~~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      ...+.+.|+|+|+++.....  .....+.+..+.|+  +|..|..+.
T Consensus       161 ~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~~~~~--lg~iP~~~~  205 (231)
T PRK12374        161 NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL--IGELPYLPR  205 (231)
T ss_pred             hCCCcEEEEEEeCccCchhhhhhHHHHHHHhcCCCE--EEEeCCCCC
Confidence            45788999999999865322  22344556677777  777766544

>cd04169 RF3 RF3 subfamily

Probab=98.97  E-value=3.7e-09  Score=101.88  Aligned_cols=222  Identities=14%  Similarity=0.085  Sum_probs=107.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .|.|+++|++|+||||++.+|.+....-. +..-++... .+....+.. ......++.+.....             .+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~-~~g~v~~~~~~~~t~~D~~-~~e~~rg~si~~~~~-------------~~   66 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIR-EAGAVKARKSRKHATSDWM-EIEKQRGISVTSSVM-------------QF   66 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcc-cCceecccccCCCccCCCc-HHHHhCCCCeEEEEE-------------EE
Confidence            37799999999999999999986543211 111111100 000000000 111122333221110             11


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhh--cCCeeEEEEccCCCCCc-
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNI--EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.++.+.|+||||...+.......      ....+.+++|+|+..+ +.....+..+..  ..+ .-+++||+|.... 
T Consensus        67 ~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~  139 (267)
T cd04169          67 EYRDCVINLLDTPGHEDFSEDTYRT------LTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREGRD  139 (267)
T ss_pred             eeCCEEEEEEECCCchHHHHHHHHH------HHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCCCC
Confidence            2468999999999975432222211      1234889999999654 222222222222  233 4588999996543 


Q ss_pred             -hhHHHHHHHHhCCCeE----EeeccCCcCC---CCCCCchhhhhhhcCC--ccHHHHHHHHHHHhhHhHHHHHHHHHhc
Q 015657          170 -GGAALSVKEVSGKPIK----LVGRGERMED---LEPFYPDRMAGRILGM--GDVLSFVEKAQEVMQQEDAEEMQKKIMS  239 (403)
Q Consensus       170 -~~~~~~~~~~~g~pi~----fig~ge~v~~---l~~f~~~~~~~r~lG~--~dv~~l~e~~~e~~~~~~~~~~~~~~~~  239 (403)
                       ...+..+.+.++.++.    +++.++.+..   +-......+.. ..|-  -....+-+...|.+.+.+.+.+.+++..
T Consensus       140 ~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~-~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~  218 (267)
T cd04169         140 PLELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDR-GAGGATIAPEETKGLDDPKLDELGGDLAEQLREE  218 (267)
T ss_pred             HHHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecC-CCCCccceeccCCcccHHHHHhcCHHHHHHHhCC
Confidence             2335667777887654    2333333221   11000000100 0000  0000000011134444445555555556


Q ss_pred             CCCCHHHHHHHHHHHHhcCC
Q 015657          240 ANFDFNDFLKQTRTVARMGS  259 (403)
Q Consensus       240 ~~~~~edl~~ql~~~~k~g~  259 (403)
                      .+++.+++.+.++.....|.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~  238 (267)
T cd04169         219 LELLEGAGPEFDQEAFLAGE  238 (267)
T ss_pred             CccchhhhHHHhHHHHHcCC
Confidence            67999998888888777664

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=98.97  E-value=2.1e-08  Score=108.58  Aligned_cols=173  Identities=24%  Similarity=0.277  Sum_probs=102.2

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      +.++|+|. +|+|||+++..|+.+|.++|++|.++..+...|.........        +..+......+.+.+.+..+.
T Consensus         3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~--------~~~~~~~~~~~~I~~~~~~l~   74 (684)
T PRK05632          3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEAL--------LASGQLDELLEEIVARYHALA   74 (684)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHH--------HhccCChHHHHHHHHHHHHhc
Confidence            45788888 999999999999999999999999877554433322222110        011111122344455566653


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHHHHHH----HHh--hhcCCeeEEEEcc--C
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV----TTF--NIEIGITGAILTK--L  164 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~~~~~----~~~--~~~~~i~GvIlNk--~  164 (403)
                       .+||++|||+++....+........++.+.+. .++++|+++.  +..++.+.+    ..+  .....+.|+|+|+  +
T Consensus        75 -~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~-~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v  152 (684)
T PRK05632         75 -KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLG-AEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNA  152 (684)
T ss_pred             -cCCCEEEEeCcCCCCcCcccCchHHHHHHHhC-CCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCC
Confidence             78999999999765432111112245566665 7999999884  322333322    233  2457899999999  5


Q ss_pred             CCCCchhHHHHH---------------HHHhCCCeEEeeccCCcCCCCC
Q 015657          165 DGDSRGGAALSV---------------KEVSGKPIKLVGRGERMEDLEP  198 (403)
Q Consensus       165 D~~~~~~~~~~~---------------~~~~g~pi~fig~ge~v~~l~~  198 (403)
                      +..........+               ....+.++.++|..|..+.+..
T Consensus       153 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~  201 (684)
T PRK05632        153 PVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIA  201 (684)
T ss_pred             CHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCC
Confidence            544222211222               0112334445888887776653

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=98.96  E-value=9.1e-09  Score=81.86  Aligned_cols=69  Identities=36%  Similarity=0.515  Sum_probs=53.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      +++++|.+|+||||++.+|+..|++.|++|+++|                                              
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~----------------------------------------------   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID----------------------------------------------   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence            4678899999999999999999999999999998                                              


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM  138 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~  138 (403)
                        |++|+|+++........     .......++.+++++++.
T Consensus        35 --d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~   69 (99)
T cd01983          35 --DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE   69 (99)
T ss_pred             --CEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCc
Confidence              99999999987643211     011122347788888773

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.89  E-value=1.4e-08  Score=91.96  Aligned_cols=149  Identities=23%  Similarity=0.298  Sum_probs=86.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC--CC-HHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE--VK-PSQIAKQGLEEA   93 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~--~~-~~~~~~~~l~~~   93 (403)
                      +++++|.-||||||+..+|.. ....|.++.+|-+|.-... +|.-. + ...++++......  .. ....+...+..+
T Consensus         2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~-iD~~~-l-~~~~~~v~~l~~gcicc~~~~~~~~~l~~l   77 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVN-IDAEL-L-QEDGVPVVELNNGCICCTLRDDLVEALRRL   77 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTH-HHHHH-H-HTTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccc-cchhh-h-cccceEEEEecCCCcccccHHHHHHHHHHH
Confidence            678999999999999999998 6677999999999865544 33321 1 2235555544321  11 112233444444


Q ss_pred             Hh-C--CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEccCCCCCc
Q 015657           94 KK-K--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSR  169 (403)
Q Consensus        94 ~~-~--~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk~D~~~~  169 (403)
                      .. .  .+|+|||++.|..+. ..++..-..+...+..+.++.|+|+..-.........+.+++.. .-||+||+|....
T Consensus        78 ~~~~~~~~d~IiIE~sG~a~p-~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~  156 (178)
T PF02492_consen   78 LREYEERPDRIIIETSGLADP-APLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD  156 (178)
T ss_dssp             CCCCHGC-SEEEEEEECSSGG-GGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH
T ss_pred             HHhcCCCcCEEEECCcccccc-chhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCCh
Confidence            32 3  579999999995543 33322234455556668899999994432111222222333332 3489999997644


Q ss_pred             h
Q 015657          170 G  170 (403)
Q Consensus       170 ~  170 (403)
                      .
T Consensus       157 ~  157 (178)
T PF02492_consen  157 E  157 (178)
T ss_dssp             H
T ss_pred             h
Confidence            4

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.89  E-value=6.1e-08  Score=89.78  Aligned_cols=141  Identities=21%  Similarity=0.312  Sum_probs=82.6

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC--C-CHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE--V-KPSQIAK   87 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~--~-~~~~~~~   87 (403)
                      .++++++|.++|..|+||||+..+|+..+.. +.+|.++..|.......+.+.    ..+.+++.....  . .......
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~----~~~~~~~~l~~gcic~~~~~~~~   92 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLR----KYGAPAIQINTGKECHLDAHMVA   92 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHH----HcCCcEEEEcCCCcccCChHHHH
Confidence            4567899999999999999999999988753 579999999976432222232    223333332221  1 1111233


Q ss_pred             HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCC
Q 015657           88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .++..+...++|+|||||.|.+....       .+  .+.....+.|+|+..+..... ....+.   ...-+++||.|.
T Consensus        93 ~~l~~~~~~~~d~IiIEt~G~l~~~~-------~~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~---~a~iiv~NK~Dl  160 (207)
T TIGR00073        93 HALEDLPLDDIDLLFIENVGNLVCPA-------DF--DLGEHMRVVLLSVTEGDDKPLKYPGMFK---EADLIVINKADL  160 (207)
T ss_pred             HHHHHhccCCCCEEEEecCCCcCCCc-------cc--ccccCeEEEEEecCcccchhhhhHhHHh---hCCEEEEEHHHc
Confidence            45555533478999999999543211       01  112244567888754432211 111111   123489999997


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       161 ~~  162 (207)
T TIGR00073       161 AE  162 (207)
T ss_pred             cc
Confidence            53

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=98.89  E-value=4.8e-08  Score=92.27  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=37.9

Q ss_pred             EEEEE-EcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           16 TVILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        16 ~iI~v-~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      +++++ .|+||+||||++.+||.+++++|++|+++|+|++.+..
T Consensus         3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~   46 (241)
T PRK13886          3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF   46 (241)
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence            34444 48899999999999999999999999999999998754

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.88  E-value=9.3e-09  Score=92.95  Aligned_cols=146  Identities=23%  Similarity=0.304  Sum_probs=95.7

Q ss_pred             CCCC-EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-C--CHHHHHH
Q 015657           12 KSRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-V--KPSQIAK   87 (403)
Q Consensus        12 ~~~~-~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~--~~~~~~~   87 (403)
                      ..+| ..|-+.|++||||||+..++...|+.+ +++.+|..|.+.....+.+...   .+.+++...+. .  .+.....
T Consensus         9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~   84 (202)
T COG0378           9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNL   84 (202)
T ss_pred             hcCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHH
Confidence            3455 788889999999999999999999987 9999999999874443444321   56666654433 2  2566666


Q ss_pred             HHHHHHHh--CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           88 QGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        88 ~~l~~~~~--~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                      .+++++..  .+.|++||++.|.+....  ..++       ...-.++|+|.+.|.+.-...-..--  .-.-+|+||.|
T Consensus        85 ~ai~~l~~~~~~~Dll~iEs~GNL~~~~--sp~L-------~d~~~v~VidvteGe~~P~K~gP~i~--~aDllVInK~D  153 (202)
T COG0378          85 EAIEELVLDFPDLDLLFIESVGNLVCPF--SPDL-------GDHLRVVVIDVTEGEDIPRKGGPGIF--KADLLVINKTD  153 (202)
T ss_pred             HHHHHHhhcCCcCCEEEEecCcceeccc--Ccch-------hhceEEEEEECCCCCCCcccCCCcee--EeeEEEEehHH
Confidence            77777652  237999999999654210  0111       11356889998777654433111110  11238999999


Q ss_pred             CCCchhH
Q 015657          166 GDSRGGA  172 (403)
Q Consensus       166 ~~~~~~~  172 (403)
                      .....+.
T Consensus       154 La~~v~~  160 (202)
T COG0378         154 LAPYVGA  160 (202)
T ss_pred             hHHHhCc
Confidence            7765544

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.83  E-value=1.3e-07  Score=102.81  Aligned_cols=221  Identities=17%  Similarity=0.192  Sum_probs=113.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+.|.|+++|..++||||++..|........ +..-++  .. ....|.. ......|+.+....             .
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~~~~~--~g-~~~~D~~-~~e~~rgiti~~~~-------------~   68 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIH-KIGEVH--DG-AATMDWM-EQEKERGITITSAA-------------T   68 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCcc-cccccc--CC-ccccCCC-HHHHhcCCCEecce-------------E
Confidence            44578899999999999999999986443211 110000  00 0000100 01112233222111             1


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.++.+++|||||...+.....    ....  ..|.+++|+|+..+  ......+.... ...++ -+++||+|...
T Consensus        69 ~~~~~~~~i~liDTPG~~~~~~~~~----~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~  141 (689)
T TIGR00484        69 TVFWKGHRINIIDTPGHVDFTVEVE----RSLR--VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR-IAFVNKMDKTG  141 (689)
T ss_pred             EEEECCeEEEEEECCCCcchhHHHH----HHHH--HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence            1124678999999999865322221    1111  23889999999654  11122222222 23333 48999999653


Q ss_pred             --chhHHHHHHHHhCCCeE----EeeccCCcCCC-CC------CCch---------hhhhhhcCCccHHHHHHHHHHHhh
Q 015657          169 --RGGAALSVKEVSGKPIK----LVGRGERMEDL-EP------FYPD---------RMAGRILGMGDVLSFVEKAQEVMQ  226 (403)
Q Consensus       169 --~~~~~~~~~~~~g~pi~----fig~ge~v~~l-~~------f~~~---------~~~~r~lG~~dv~~l~e~~~e~~~  226 (403)
                        .......+.+.++....    +++....+..+ ..      +++.         .+.+..  ...+.++++.+.|.+.
T Consensus       142 ~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~e~v~  219 (689)
T TIGR00484       142 ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDL--LEQAKELRENLVEAVA  219 (689)
T ss_pred             CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHH--HHHHHHHHHHHHHHHH
Confidence              23344556666554321    22222222110 00      0000         000000  0223456666666666


Q ss_pred             HhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657          227 QEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS  259 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~  259 (403)
                      +.+++.+.+++...+++.+++.+.++.....+.
T Consensus       220 e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~  252 (689)
T TIGR00484       220 EFDEELMEKYLEGEELTIEEIKNAIRKGVLNCE  252 (689)
T ss_pred             hcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Confidence            666666777777668999999988888655443

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.82  E-value=9.4e-09  Score=97.41  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=28.8

Q ss_pred             EEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           20 LAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        20 v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      |+|+.||||||++..+..++...|++|.+|..||..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~   36 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV   36 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence            579999999999999999999999999999999754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.80  E-value=1.1e-07  Score=84.45  Aligned_cols=144  Identities=18%  Similarity=0.245  Sum_probs=81.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-------CCCHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-------EVKPSQIAKQG   89 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-------~~~~~~~~~~~   89 (403)
                      +++++|..|+||||+...++...  .|+++.++..|..... ++.....  ..+.+++....       ...-...+.+.
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~-~d~~~~~--~~~~~v~~l~~GCiCC~~~~~l~~~l~~l   76 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVG-IDNQLVV--DTDEEIIEMNNGCICCTVRGDLIRALLDL   76 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccc-hhHHHHh--CCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence            57899999999999999887653  4889988887754333 2222111  23334444332       11222233333


Q ss_pred             HHHH--HhCCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEcc
Q 015657           90 LEEA--KKKNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK  163 (403)
Q Consensus        90 l~~~--~~~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk  163 (403)
                      +..+  ...++|+|+|||||..... .+...+   ..+......+.++.|+|+............+.+++.. .-||+||
T Consensus        77 ~~~~~~~~~~~d~I~IEt~G~~~p~-~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk  155 (158)
T cd03112          77 LERLDAGKIAFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK  155 (158)
T ss_pred             HHHHHhccCCCCEEEEECCCcCCHH-HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence            3332  1247899999999987532 233221   1233344567889999985443332222222233322 3389999


Q ss_pred             CCC
Q 015657          164 LDG  166 (403)
Q Consensus       164 ~D~  166 (403)
                      +|.
T Consensus       156 ~dl  158 (158)
T cd03112         156 TDL  158 (158)
T ss_pred             ccC
Confidence            983

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=98.80  E-value=5.8e-08  Score=96.68  Aligned_cols=125  Identities=21%  Similarity=0.261  Sum_probs=80.5

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-----HH---------HHHHhhhccCCceEeC
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----ID---------QLVILGEQVGVPVYTA   76 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-----~~---------~l~~~~~~~gv~v~~~   76 (403)
                      +..++.+++++|+.+|||||+++-||..+-.+|++|.++|+|+-.+..     +.         .+..+.......+-..
T Consensus        69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~i  148 (398)
T COG1341          69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSI  148 (398)
T ss_pred             hccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEecc
Confidence            456678899999999999999999999999999999999999855332     10         1111111111111111


Q ss_pred             CCCCCHH---HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           77 GTEVKPS---QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        77 ~~~~~~~---~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      .+...+.   ..+.++++.++ +..|++||||+|.+.-.. .+.-...+..+++|+.++.+=++
T Consensus       149 sP~~~~~~~i~~v~rL~~~a~-~~~~~ilIdT~GWi~G~~-g~elk~~li~~ikP~~Ii~l~~~  210 (398)
T COG1341         149 SPQGFPGRYIAGVARLVDLAK-KEADFILIDTDGWIKGWG-GLELKRALIDAIKPDLIIALERA  210 (398)
T ss_pred             CCCCChHHHHHHHHHHHHHhh-ccCCEEEEcCCCceeCch-HHHHHHHHHhhcCCCEEEEeccc
Confidence            1122222   33456667775 347999999999986422 23344566777788877776444

>PRK00007 elongation factor G; Reviewed

Probab=98.78  E-value=4.3e-07  Score=98.77  Aligned_cols=222  Identities=18%  Similarity=0.158  Sum_probs=113.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+.+.|+++|..++||||++..|........ +..-++..   ....|.. ......|+.+.....             
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~g~v~~~---~~~~D~~-~~E~~rg~ti~~~~~-------------   68 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNH-KIGEVHDG---AATMDWM-EQEQERGITITSAAT-------------   68 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCC---cccCCCC-HHHHhCCCCEeccEE-------------
Confidence            34568899999999999999999986554211 11011100   0000110 011222333222111             


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDS  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.++.+.+|||||...+..    ++.....  ..|.+++|+|+..+  ......+... ....++ -+++||+|...
T Consensus        69 ~~~~~~~~~~liDTPG~~~f~~----ev~~al~--~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~-iv~vNK~D~~~  141 (693)
T PRK00007         69 TCFWKDHRINIIDTPGHVDFTI----EVERSLR--VLDGAVAVFDAVGGVEPQSETVWRQADKYKVPR-IAFVNKMDRTG  141 (693)
T ss_pred             EEEECCeEEEEEeCCCcHHHHH----HHHHHHH--HcCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence            1124688999999999754322    2222222  23788999999544  1222222222 223444 38999999653


Q ss_pred             --chhHHHHHHHHhCCCeE----EeeccCCc---CCCCCCCchhhhhhh-------c-----CCccHHHHHHHHHHHhhH
Q 015657          169 --RGGAALSVKEVSGKPIK----LVGRGERM---EDLEPFYPDRMAGRI-------L-----GMGDVLSFVEKAQEVMQQ  227 (403)
Q Consensus       169 --~~~~~~~~~~~~g~pi~----fig~ge~v---~~l~~f~~~~~~~r~-------l-----G~~dv~~l~e~~~e~~~~  227 (403)
                        .......+.+.++....    +++....+   .++..+....+.+..       .     ....+.++++.+.+.+.+
T Consensus       142 ~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e  221 (693)
T PRK00007        142 ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAE  221 (693)
T ss_pred             CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHc
Confidence              22344556666665321    22222221   111100000000000       0     001233555666666666


Q ss_pred             hHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657          228 EDAEEMQKKIMSANFDFNDFLKQTRTVARMG  258 (403)
Q Consensus       228 ~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g  258 (403)
                      .+++.+.+++...+++.+++.+.++.....|
T Consensus       222 ~dd~lle~yle~~~l~~~~l~~~l~~~~~~~  252 (693)
T PRK00007        222 ADEELMEKYLEGEELTEEEIKAALRKATIAN  252 (693)
T ss_pred             cCHHHHHHHhCcCCCCHHHHHHHHHHHHhcC
Confidence            6666677777767899999999988776654

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.76  E-value=4.6e-08  Score=87.10  Aligned_cols=48  Identities=31%  Similarity=0.477  Sum_probs=43.3

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      ...++.+|+++|++||||||+|.+|...|.++|++|.++|+|..|...
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL   66 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL   66 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc
Confidence            356789999999999999999999999999999999999999766443

>PRK12739 elongation factor G; Reviewed

Probab=98.74  E-value=4.5e-07  Score=98.60  Aligned_cols=221  Identities=18%  Similarity=0.166  Sum_probs=112.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+.+.|+++|+.++||||++..|........ +..-++.   +....|.. ......|+.+-....             
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~-~~~~v~~---~~~~~D~~-~~E~~rgiti~~~~~-------------   66 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSH-KIGEVHD---GAATMDWM-EQEQERGITITSAAT-------------   66 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCcc-ccccccC---CccccCCC-hhHhhcCCCccceeE-------------
Confidence            44678899999999999999999986543211 1111110   00001111 011112222111100             


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDS  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.++.+++|||||...+    ..+......  ..|.+++|+|+..+.  .....+... ....++ -+++||+|...
T Consensus        67 ~~~~~~~~i~liDTPG~~~f----~~e~~~al~--~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~  139 (691)
T PRK12739         67 TCFWKGHRINIIDTPGHVDF----TIEVERSLR--VLDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIG  139 (691)
T ss_pred             EEEECCEEEEEEcCCCHHHH----HHHHHHHHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence            11246889999999997532    222222222  238899999995541  112222222 223444 38999999653


Q ss_pred             --chhHHHHHHHHhCCCeE----EeeccCCcCCCCCCCchhhhhhhcCC-----------------ccHHHHHHHHHHHh
Q 015657          169 --RGGAALSVKEVSGKPIK----LVGRGERMEDLEPFYPDRMAGRILGM-----------------GDVLSFVEKAQEVM  225 (403)
Q Consensus       169 --~~~~~~~~~~~~g~pi~----fig~ge~v~~l~~f~~~~~~~r~lG~-----------------~dv~~l~e~~~e~~  225 (403)
                        .......+.+.++....    +++....+..+.  +...+..+.++-                 ..+..+++.+-+.+
T Consensus       140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~v--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v  217 (691)
T PRK12739        140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVI--DLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAV  217 (691)
T ss_pred             CCHHHHHHHHHHHhCCCceeEEecccccccceEEE--EcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhh
Confidence              23344556666655221    111111110000  000011111110                 12234555566666


Q ss_pred             hHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657          226 QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS  259 (403)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~  259 (403)
                      .+.+++.+.+++...+++.+++...++.....|.
T Consensus       218 ~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~  251 (691)
T PRK12739        218 AEVDEELMEKYLEGEEITEEEIKAAIRKATINME  251 (691)
T ss_pred             hhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Confidence            6666767777777778999999998887766654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.3e-07  Score=101.56  Aligned_cols=220  Identities=21%  Similarity=0.209  Sum_probs=126.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC--cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~--kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      ..+.|.|.++++-.+||||++..|.++-..-.+  +|.  +++    +..|+. ......|+.+..+....         
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~--~g~----~~~D~~-e~EqeRGITI~saa~s~---------   70 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVH--DGA----ATMDWM-EQEQERGITITSAATTL---------   70 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCcccc--CCC----ccCCCc-HHHHhcCCEEeeeeeEE---------
Confidence            346789999999999999999999877654332  221  111    111111 22334455554432211         


Q ss_pred             HHHHHhC-CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCe-eEEEEccCCC
Q 015657           90 LEEAKKK-NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDG  166 (403)
Q Consensus        90 l~~~~~~-~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlNk~D~  166 (403)
                          .|+ +|.+.||||||...+..+...+|..+      |.+++|+|+..| +.....++......++ .-+++||+|.
T Consensus        71 ----~~~~~~~iNlIDTPGHVDFt~EV~rslrvl------DgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR  140 (697)
T COG0480          71 ----FWKGDYRINLIDTPGHVDFTIEVERSLRVL------DGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDR  140 (697)
T ss_pred             ----EEcCceEEEEeCCCCccccHHHHHHHHHhh------cceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccc
Confidence                245 49999999999987766555555433      889999999555 3333334433333322 4489999996


Q ss_pred             C--CchhHHHHHHHHhCCCeE----EeeccCCcCC---CC-----CCC---chh---hhhhhcCCccHHHHHHHHHHHhh
Q 015657          167 D--SRGGAALSVKEVSGKPIK----LVGRGERMED---LE-----PFY---PDR---MAGRILGMGDVLSFVEKAQEVMQ  226 (403)
Q Consensus       167 ~--~~~~~~~~~~~~~g~pi~----fig~ge~v~~---l~-----~f~---~~~---~~~r~lG~~dv~~l~e~~~e~~~  226 (403)
                      .  ........+...++.++.    .++..+.+.+   +.     .|.   ...   +.+...  +-..++.+.+.+.+.
T Consensus       141 ~~a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~--~~~~e~r~~~~e~i~  218 (697)
T COG0480         141 LGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLK--EIAEEAREKLLEALA  218 (697)
T ss_pred             cccChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHH--hHHHHHHHHHHHHHh
Confidence            5  344555667777777443    3344222222   00     111   000   000111  111345556666665


Q ss_pred             HhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657          227 QEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS  259 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~  259 (403)
                      +.+.+.+..++...+++.+++.+.++.-...+.
T Consensus       219 e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~  251 (697)
T COG0480         219 EFDEELMEKYLEGEEPTEEEIKKALRKGTIAGK  251 (697)
T ss_pred             hcCHHHHHHHhcCCCccHHHHHHHHHHhhhccc
Confidence            555444455555557999999999998887743

>PRK00089 era GTPase Era; Reviewed

Probab=98.72  E-value=1.3e-07  Score=92.05  Aligned_cols=120  Identities=20%  Similarity=0.258  Sum_probs=70.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +.-+|+++|.+||||||+...|.      |.++.++...++....        ...  .++.                  
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~tt~~--------~i~--~i~~------------------   49 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTRH--------RIR--GIVT------------------   49 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHh------CCceeecCCCCCcccc--------cEE--EEEE------------------
Confidence            34678999999999999998887      7788766654332110        000  0111                  


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEeccc--HHHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                       ..+++++++||||.......+-..+.  .......+|.+++|+|+..  ..........+...-...-+|+||+|...
T Consensus        50 -~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~  127 (292)
T PRK00089         50 -EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK  127 (292)
T ss_pred             -cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence             13578999999997654322221111  1122335688999999954  23333333333321123458999999863

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.66  E-value=1.6e-07  Score=83.19  Aligned_cols=135  Identities=24%  Similarity=0.284  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.|.|||||+-.+|.      |.++.+-.    -|+.     +.....|.  +.                   ..
T Consensus         2 ~ialvG~PNvGKStLfN~Lt------g~~~~v~n----~pG~-----Tv~~~~g~--~~-------------------~~   45 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALT------GAKQKVGN----WPGT-----TVEKKEGI--FK-------------------LG   45 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHH------TTSEEEEE----STTS-----SSEEEEEE--EE-------------------ET
T ss_pred             EEEEECCCCCCHHHHHHHHH------CCCceecC----CCCC-----CeeeeeEE--EE-------------------ec
Confidence            37899999999999999888      77754322    1111     11111111  11                   14


Q ss_pred             CCcEEEEeCCCCccccHHhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh---
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG---  171 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~---  171 (403)
                      +..+.+||+||..........|.  .+....-.+|-+++|+|+...+........+.+.-.+.-+++||+|...+.+   
T Consensus        46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i  125 (156)
T PF02421_consen   46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI  125 (156)
T ss_dssp             TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE
T ss_pred             CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE
Confidence            68999999999766432221221  1222233689999999997766666666555544444569999999765443   


Q ss_pred             HHHHHHHHhCCCeEEe
Q 015657          172 AALSVKEVSGKPIKLV  187 (403)
Q Consensus       172 ~~~~~~~~~g~pi~fi  187 (403)
                      ....+.+.+|+|+.++
T Consensus       126 d~~~Ls~~Lg~pvi~~  141 (156)
T PF02421_consen  126 DAEKLSERLGVPVIPV  141 (156)
T ss_dssp             -HHHHHHHHTS-EEEE
T ss_pred             CHHHHHHHhCCCEEEE
Confidence            2456777899998543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.64  E-value=5.9e-07  Score=87.03  Aligned_cols=141  Identities=18%  Similarity=0.278  Sum_probs=88.6

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC---CCHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE---VKPSQIAK   87 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~---~~~~~~~~   87 (403)
                      ...+..++.|+|.+||||||+...|...|... +++.++..|.......+.+    ...+++++.....   ......+.
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI----~~~g~pvvqi~tG~~Chl~a~mv~  174 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARI----RATGTPAIQVNTGKGCHLDAQMIA  174 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHH----HhcCCcEEEecCCCCCcCcHHHHH
Confidence            45677899999999999999999999988754 5899999997654322222    2345666554331   22344567


Q ss_pred             HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEccCCC
Q 015657           88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDG  166 (403)
Q Consensus        88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk~D~  166 (403)
                      +++..+...+.|++|||+.|.+......     ++    .....+.|++...+.+...   .+...+.. .-+|+||+|.
T Consensus       175 ~Al~~L~~~~~d~liIEnvGnLvcPa~f-----dl----ge~~~v~vlsV~eg~dkpl---Kyp~~f~~ADIVVLNKiDL  242 (290)
T PRK10463        175 DAAPRLPLDDNGILFIENVGNLVCPASF-----DL----GEKHKVAVLSVTEGEDKPL---KYPHMFAAASLMLLNKVDL  242 (290)
T ss_pred             HHHHHHhhcCCcEEEEECCCCccCCCcc-----ch----hhceeEEEEECccccccch---hccchhhcCcEEEEEhHHc
Confidence            7788887678899999999975332211     11    1122346666654432111   12222222 3489999997


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       243 l~  244 (290)
T PRK10463        243 LP  244 (290)
T ss_pred             Cc
Confidence            64

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.64  E-value=1.2e-07  Score=99.59  Aligned_cols=159  Identities=21%  Similarity=0.247  Sum_probs=83.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-HHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-IDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      .+.+.|+++|+.|+||||++.+|.++...- .+..-|+.-...... .+.. ......|+.+.....             
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i-~~~g~v~~~~~~~~~~~D~~-~~E~~rgiSi~~~~~-------------   72 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAI-QEAGTVKGRKSGRHATSDWM-EMEKQRGISVTSSVM-------------   72 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCc-cccceeeccccCccccCCCc-HHHHhhCCceeeeeE-------------
Confidence            457889999999999999999998644321 111122210000000 0001 111223333322111             


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH-HHHHHHHHhh--hcCCeeEEEEccCCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFN--IEIGITGAILTKLDGDS  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~-~~~~~~~~~~--~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.++.+.|+||||...+.......+      ...+.+++|+|+..+. .....+....  ..++ .-+++||+|...
T Consensus        73 ~~~~~~~~inliDTPG~~df~~~~~~~l------~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~  145 (526)
T PRK00741         73 QFPYRDCLINLLDTPGHEDFSEDTYRTL------TAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDG  145 (526)
T ss_pred             EEEECCEEEEEEECCCchhhHHHHHHHH------HHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccc
Confidence            1113578899999999754332222222      2348999999996541 1112222222  2333 448999999653


Q ss_pred             c--hhHHHHHHHHhCCCeE----EeeccCCc
Q 015657          169 R--GGAALSVKEVSGKPIK----LVGRGERM  193 (403)
Q Consensus       169 ~--~~~~~~~~~~~g~pi~----fig~ge~v  193 (403)
                      .  ...+..+.+.++.++.    ++|.+..+
T Consensus       146 a~~~~~l~~i~~~l~~~~~p~~~Pig~~~~f  176 (526)
T PRK00741        146 REPLELLDEIEEVLGIACAPITWPIGMGKRF  176 (526)
T ss_pred             cCHHHHHHHHHHHhCCCCeeEEeccccCCce
Confidence            2  2345667777787543    34544443

>TIGR00436 era GTP-binding protein Era

Probab=98.62  E-value=2.7e-07  Score=89.04  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.+||||||+...|.      |.++.++..-++...        ....++  ..                   ..
T Consensus         2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~~~~TTr--------~~i~~i--~~-------------------~~   46 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLH------GQKISITSPKAQTTR--------NRISGI--HT-------------------TG   46 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCcEeecCCCCCccc--------CcEEEE--EE-------------------cC
Confidence            37889999999999998888      777765543222111        000111  11                   13


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHH-H-HhhhcCCceEEEEEecccHHHH-HHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELK-D-VKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~-~-i~~~~~~~~vllVvda~~g~~~-~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ++.++++||||.......+...+. . ....-.+|-+++|+|+...... ......+...-...-+|+||+|....
T Consensus        47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK  122 (270)
T ss_pred             CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH
Confidence            567999999997643222211111 1 1122346889999999533211 12222222222234589999997543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.59  E-value=1.8e-07  Score=82.65  Aligned_cols=44  Identities=39%  Similarity=0.536  Sum_probs=38.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      ++.+|+++|++||||||+|..|...|...|++|.++|.|..|..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~   44 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG   44 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence            47899999999999999999999999999999999999965543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.57  E-value=1.3e-07  Score=91.38  Aligned_cols=91  Identities=20%  Similarity=0.226  Sum_probs=58.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC----hhhHHHHHHhhhccCCc---eEeCCCCC--CHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR----PAAIDQLVILGEQVGVP---VYTAGTEV--KPSQIA   86 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r----p~~~~~l~~~~~~~gv~---v~~~~~~~--~~~~~~   86 (403)
                      ++|.|+|.+||||||++.+|+..|+++| +|.+|+.|+..    ++. |....  ...|.+   +++.....  .....+
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~-Ds~~~--~~aGa~~v~~~s~~~~~~~~~~~~l   77 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGT-DTGRH--FDAGADVVYGLTDGEWVASGRDRSL   77 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCC-CcHHH--HHCCCcEEEEecCCeEEEEecCCCH
Confidence            5899999999999999999999999999 89999999854    331 11111  111211   11110000  001123


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccc
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~  111 (403)
                      .+.+..+. .++|+||||+......
T Consensus        78 ~~~l~~l~-~~~D~vlVEG~k~~~~  101 (274)
T PRK14493         78 DDALDDLA-PGMDYAVVEGFKDSRL  101 (274)
T ss_pred             HHHHHhhC-cCCCEEEEECCCCCCC
Confidence            44455553 5799999999998654

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=8.2e-07  Score=88.83  Aligned_cols=158  Identities=24%  Similarity=0.340  Sum_probs=101.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh---CCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~---~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~   88 (403)
                      .+.|..+|..+|-+||||++.+|..+-..   .|    -|.+-- .+.+..|++ ...++.|+.+..+--          
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG----~Vk~rk~~~~a~SDWM-~iEkqRGISVtsSVM----------   74 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG----TVKGRKSGKHAKSDWM-EIEKQRGISVTSSVM----------   74 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcc----eeeeccCCcccccHHH-HHHHhcCceEEeeEE----------
Confidence            35678899999999999999999875432   22    111111 122223444 566778888765421          


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCC
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLD  165 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D  165 (403)
                         .+...++-+.|+||||.-.+.++....|.++      |..++|+|+.-|  .....+..-.. ..++|. -++||+|
T Consensus        75 ---qF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAv------DsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~-TFiNKlD  144 (528)
T COG4108          75 ---QFDYADCLVNLLDTPGHEDFSEDTYRTLTAV------DSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF-TFINKLD  144 (528)
T ss_pred             ---EeccCCeEEeccCCCCccccchhHHHHHHhh------heeeEEEecccCccHHHHHHHHHHhhcCCceE-EEeeccc
Confidence               1113578899999999887777776666555      888999999655  33333333332 334443 6889999


Q ss_pred             CCCch--hHHHHHHHHhCC---CeE-EeeccCCcCC
Q 015657          166 GDSRG--GAALSVKEVSGK---PIK-LVGRGERMED  195 (403)
Q Consensus       166 ~~~~~--~~~~~~~~~~g~---pi~-fig~ge~v~~  195 (403)
                      ...+.  ..+.++.+.+++   |+. +||.|.....
T Consensus       145 R~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~G  180 (528)
T COG4108         145 REGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKG  180 (528)
T ss_pred             cccCChHHHHHHHHHHhCcceecccccccCCcccce
Confidence            77554  455667776665   554 5777766544

>PRK13351 elongation factor G; Reviewed

Probab=98.56  E-value=4.2e-06  Score=91.09  Aligned_cols=215  Identities=19%  Similarity=0.206  Sum_probs=109.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ...+.|+++|..|+||||++..|......-. +..-++....-.+.. .   .....++.+....             ..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~-~~~~v~~~~~~~d~~-~---~e~~r~~ti~~~~-------------~~   67 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIH-KMGEVEDGTTVTDWM-P---QEQERGITIESAA-------------TS   67 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCcc-ccccccCCcccCCCC-H---HHHhcCCCcccce-------------EE
Confidence            3567899999999999999999886432110 000111000000000 0   0011222211110             01


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC-
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS-  168 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~-  168 (403)
                      +.+.++.+.|+||||...+..    +......  ..|.+++|+|+..+  ........... ...++ -+++||+|... 
T Consensus        68 ~~~~~~~i~liDtPG~~df~~----~~~~~l~--~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~~~~  140 (687)
T PRK13351         68 CDWDNHRINLIDTPGHIDFTG----EVERSLR--VLDGAVVVFDAVTGVQPQTETVWRQADRYGIPR-LIFINKMDRVGA  140 (687)
T ss_pred             EEECCEEEEEEECCCcHHHHH----HHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEECCCCCCC
Confidence            123578999999999754322    2222222  23889999999544  12222222222 23333 48999999653 


Q ss_pred             -chhHHHHHHHHhCCCeEE--e--eccCCcCC---CC-----CCC-------------chhhhhhhcCCccHHHHHHHHH
Q 015657          169 -RGGAALSVKEVSGKPIKL--V--GRGERMED---LE-----PFY-------------PDRMAGRILGMGDVLSFVEKAQ  222 (403)
Q Consensus       169 -~~~~~~~~~~~~g~pi~f--i--g~ge~v~~---l~-----~f~-------------~~~~~~r~lG~~dv~~l~e~~~  222 (403)
                       ....+.++...++.++..  +  +.+..+..   +.     .|.             |..+.+      .+..+++.+.
T Consensus       141 ~~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~  214 (687)
T PRK13351        141 DLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLE------EVEEAREKLI  214 (687)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHH------HHHHHHHHHH
Confidence             345556777777775431  1  11111100   00     000             111111      1224444555


Q ss_pred             HHhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657          223 EVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG  258 (403)
Q Consensus       223 e~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g  258 (403)
                      +.+.+.+.+.+.+++...+++.+++...++....++
T Consensus       215 e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~  250 (687)
T PRK13351        215 EALAEFDDELLELYLEGEELSAEQLRAPLREGTRSG  250 (687)
T ss_pred             HHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence            555555555566666666899999999999887653

>cd04163 Era Era subfamily

Probab=98.52  E-value=2.5e-06  Score=74.02  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.+|+||||++..|.      |.++..+..++....           .......                  .
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~~~-----------~~~~~~~------------------~   47 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTR-----------NRIRGIY------------------T   47 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCcee-----------ceEEEEE------------------E
Confidence            4568999999999999998887      666665543322100           0000000                  0


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+++++++||||...........+.  ........+.+++|+|+...  +........+...-....+|+||+|...
T Consensus        48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~  125 (168)
T cd04163          48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK  125 (168)
T ss_pred             cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence            13578999999997643221111110  11122345788999999543  2222222323222233459999999763

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.51  E-value=6.2e-06  Score=76.07  Aligned_cols=140  Identities=19%  Similarity=0.247  Sum_probs=77.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEe---CCC-----CCCHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT---AGT-----EVKPSQIA   86 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~---~~~-----~~~~~~~~   86 (403)
                      |..+.++|++|+||||+...+...+... .++.++..|.+.....+.+...+....-.+..   .+.     +.+.... 
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-   78 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMN-   78 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHH-
Confidence            4578999999999999999999887653 56888888877643322222221100001111   111     1122111 


Q ss_pred             HHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEEEcc
Q 015657           87 KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK  163 (403)
Q Consensus        87 ~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvIlNk  163 (403)
                      ..++..+.  ...+|+|||+|.|..-. .....   .    + .+.++.|+|+..+.+....   ....+.. .-+|+||
T Consensus        79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~-~~~~~---~----l-~~~~i~vvD~~~~~~~~~~---~~~qi~~ad~~~~~k  146 (199)
T TIGR00101        79 LEAVAEMEARFPPLEMVFIESGGDNLS-ATFSP---E----L-ADLTIFVIDVAAGDKIPRK---GGPGITRSDLLVINK  146 (199)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCcc-cccch---h----h-hCcEEEEEEcchhhhhhhh---hHhHhhhccEEEEEh
Confidence            22223321  24699999999994211 11111   1    1 2668999999766553322   1122222 3489999


Q ss_pred             CCCCC
Q 015657          164 LDGDS  168 (403)
Q Consensus       164 ~D~~~  168 (403)
                      +|...
T Consensus       147 ~d~~~  151 (199)
T TIGR00101       147 IDLAP  151 (199)
T ss_pred             hhccc
Confidence            99763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.49  E-value=2.4e-06  Score=84.39  Aligned_cols=162  Identities=19%  Similarity=0.234  Sum_probs=89.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-------CCCCHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-------TEVKPSQIA   86 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-------~~~~~~~~~   86 (403)
                      +..+.+++|.-||||||+..+|...  ..|.+++++-.|.-.- .+|.... . ..+..++...       ...+-...+
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v-~iD~~ll-~-~~~~~v~eL~~GCiCCs~~~~l~~~l   77 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEV-SVDDQLI-G-DRATQIKTLTNGCICCSRSNELEDAL   77 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCc-cccHHHH-h-CcCceEEEECCCEEEEccCchHHHHH
Confidence            3467899999999999999998854  3589999998884332 2332211 1 1122222221       122223333


Q ss_pred             HHHHHHHHh--CCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEE
Q 015657           87 KQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAI  160 (403)
Q Consensus        87 ~~~l~~~~~--~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvI  160 (403)
                      .+.+.....  ..+|+|||+|.|... ...++..+   ..+...+.-+.++.|||+............+..++.. .-||
T Consensus        78 ~~l~~~~~~~~~~~d~IvIEttG~a~-p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv  156 (318)
T PRK11537         78 LDLLDNLDKGNIQFDRLVIECTGMAD-PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  156 (318)
T ss_pred             HHHHHHHhccCCCCCEEEEECCCccC-HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence            333333221  159999999999754 22333332   1222333347789999995443322211122222222 3489


Q ss_pred             EccCCCCCchhHHHHHHHHhC
Q 015657          161 LTKLDGDSRGGAALSVKEVSG  181 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g  181 (403)
                      +||+|.......+.......+
T Consensus       157 lnK~Dl~~~~~~~~~~l~~ln  177 (318)
T PRK11537        157 LTKTDVAGEAEKLRERLARIN  177 (318)
T ss_pred             EeccccCCHHHHHHHHHHHhC
Confidence            999997654444444444444

>smart00053 DYNc Dynamin, GTPase

Probab=98.49  E-value=1.7e-06  Score=81.92  Aligned_cols=81  Identities=23%  Similarity=0.345  Sum_probs=50.6

Q ss_pred             CcEEEEeCCCCccc---c--HHhHHHHHH-HhhhcC-C-ceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           98 VDVVIVDTAGRLQI---D--KAMMDELKD-VKRVLN-P-TEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        98 ~D~VIIDtpg~l~~---d--~~l~~el~~-i~~~~~-~-~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .|+.|||+||....   +  ......+.. +...+. + +-+++|+|+..   .+++...++.+.......-+|+||+|.
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~  204 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL  204 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence            79999999999743   1  222222222 222222 3 35678888743   356667777777666666689999998


Q ss_pred             CCchhHHHHHHH
Q 015657          167 DSRGGAALSVKE  178 (403)
Q Consensus       167 ~~~~~~~~~~~~  178 (403)
                      ..++..+..+..
T Consensus       205 ~~~~~~~~~~~~  216 (240)
T smart00053      205 MDEGTDARDILE  216 (240)
T ss_pred             CCccHHHHHHHh
Confidence            776655444443

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.48  E-value=1.2e-06  Score=92.16  Aligned_cols=150  Identities=19%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      .+.+.|+++|++|+||||++.+|..+...- .+..-|+.+-. +....+.. ......|+.+......            
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~~-~~E~~rgisi~~~~~~------------   74 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDWM-EMEKQRGISITTSVMQ------------   74 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCCC-HHHHhcCCcEEEEEEE------------
Confidence            457889999999999999999987654211 11112222110 00111111 1222334443221110            


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-H-HHHHHHHHhhhcCCeeEEEEccCCCCC-
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q-EAAALVTTFNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~-~~~~~~~~~~~~~~i~GvIlNk~D~~~-  168 (403)
                       +.+.++.+.|+||||...+.......      ...+|.+++|+|+..+ + ............-...-+++||+|... 
T Consensus        75 -~~~~~~~inliDTPG~~df~~~~~~~------l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        75 -FPYRDCLVNLLDTPGHEDFSEDTYRT------LTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             -EeeCCeEEEEEECCChhhHHHHHHHH------HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC
Confidence             11357899999999975332222221      1235899999999654 1 222222222211223458999999753 


Q ss_pred             -chhHHHHHHHHhCCC
Q 015657          169 -RGGAALSVKEVSGKP  183 (403)
Q Consensus       169 -~~~~~~~~~~~~g~p  183 (403)
                       .......+...++.+
T Consensus       148 ~~~~ll~~i~~~l~~~  163 (527)
T TIGR00503       148 DPLELLDEVENELKIN  163 (527)
T ss_pred             CHHHHHHHHHHHhCCC
Confidence             233445566666654

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK15494 era GTPase Era; Provisional

Probab=98.46  E-value=2.6e-06  Score=84.95  Aligned_cols=118  Identities=18%  Similarity=0.270  Sum_probs=63.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.+||||||+...|.      |.++.++..-++..        .....  .++.                   .
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~k~~tT--------r~~~~--~~~~-------------------~   97 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRII------GEKLSIVTPKVQTT--------RSIIT--GIIT-------------------L   97 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHh------CCceeeccCCCCCc--------cCcEE--EEEE-------------------e
Confidence            368999999999999998886      66665443221110        00000  1111                   1


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHH--HhhhcCCceEEEEEecccH-HHH-HHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTG-QEA-AALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~--i~~~~~~~~vllVvda~~g-~~~-~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      +++.++++||||.......+...+..  +.....+|.+++|+|+... ... ...+......-.+.-+|+||+|...
T Consensus        98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~  174 (339)
T PRK15494         98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES  174 (339)
T ss_pred             CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence            46789999999975322111111111  1123356889999998432 111 1222222221122347899999753

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.43  E-value=3.5e-06  Score=77.45  Aligned_cols=123  Identities=21%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      .|+++|..++||||++..|.....+.|..-...  ..|        .. ......|+.+.....             .+.
T Consensus         4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d--------~~-~~E~~rg~Ti~~~~~-------------~~~   61 (195)
T cd01884           4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEID--------KA-PEEKARGITINTAHV-------------EYE   61 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhccccccccccccc--------CC-hhhhhcCccEEeeee-------------Eec
Confidence            488999999999999999998776555321100  111        10 011122333222111             112


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .+++.+++|||||...+    ..++.  ......|.+++|+|+..+  ......+.... ...+..-+++||+|..
T Consensus        62 ~~~~~i~~iDtPG~~~~----~~~~~--~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~  131 (195)
T cd01884          62 TANRHYAHVDCPGHADY----IKNMI--TGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV  131 (195)
T ss_pred             CCCeEEEEEECcCHHHH----HHHHH--HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence            35678999999997532    22221  122245889999999543  22222222222 1222233778999974

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12740 elongation factor G; Reviewed

Probab=98.39  E-value=3e-06  Score=91.95  Aligned_cols=207  Identities=16%  Similarity=0.211  Sum_probs=102.4

Q ss_pred             EcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcE
Q 015657           21 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV  100 (403)
Q Consensus        21 ~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~  100 (403)
                      +|+.++||||++.+|+....   ..+..-+.|.. ....+.+ ......++.+....             ..+.+.++++
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g---~i~~~~~~~~~-~~~~d~~-~~e~~rgiTi~~~~-------------~~~~~~~~~i   62 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTG---AIHRIGEVEDG-TTTMDFM-PEERERGISITSAA-------------TTCEWKGHKI   62 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcC---CCccCccccCC-cccCCCC-hHHHhcCCCeeece-------------EEEEECCEEE
Confidence            48899999999999986632   21111111110 0111111 11122333332111             1112468999


Q ss_pred             EEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhh-hcCCeeEEEEccCCCCCc--hhHHHH
Q 015657          101 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDSR--GGAALS  175 (403)
Q Consensus       101 VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~-~~~~i~GvIlNk~D~~~~--~~~~~~  175 (403)
                      +||||||...+.....    ..  ...+|.+++|+|+..+.  .......... ...+ .-+|+||+|....  ......
T Consensus        63 ~liDtPG~~~~~~~~~----~~--l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~~~~~~~  135 (668)
T PRK12740         63 NLIDTPGHVDFTGEVE----RA--LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGADFFRVLAQ  135 (668)
T ss_pred             EEEECCCcHHHHHHHH----HH--HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHH
Confidence            9999999754322222    11  12358999999995442  1222222222 2223 4479999996532  234456


Q ss_pred             HHHHhCCCeEEe--e--ccCCcCCCC-CCC-----------------chhhhhhhcCCccHHHHHHHHHHHhhHhHHHHH
Q 015657          176 VKEVSGKPIKLV--G--RGERMEDLE-PFY-----------------PDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM  233 (403)
Q Consensus       176 ~~~~~g~pi~fi--g--~ge~v~~l~-~f~-----------------~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~  233 (403)
                      +.+.++.|+...  .  .+..+..+. .+.                 |..+      ...+..+++.+-+.+.+.+++.+
T Consensus       136 l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~e~~~~~d~~~l  209 (668)
T PRK12740        136 LQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAEL------LDRAEEAREELLEALAEFDDELM  209 (668)
T ss_pred             HHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHH------HHHHHHHHHHHHHHHHhcCHHHH
Confidence            666777765311  1  111110000 000                 1011      01122334444455545555555


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657          234 QKKIMSANFDFNDFLKQTRTVARMG  258 (403)
Q Consensus       234 ~~~~~~~~~~~edl~~ql~~~~k~g  258 (403)
                      .+++...+++.+++...++....++
T Consensus       210 e~~l~~~~l~~~~~~~~~~~~~~~~  234 (668)
T PRK12740        210 EKYLEGEELSEEEIKAGLRKATLAG  234 (668)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcC
Confidence            5666556799999999988776544

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.37  E-value=5.9e-06  Score=69.10  Aligned_cols=91  Identities=29%  Similarity=0.310  Sum_probs=62.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      +..++++|++|+||||++..|+..+...++.+.+++++...........      ....................+..++
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~   75 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR   75 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999887778999998865543322211      1111111223344555566666665


Q ss_pred             hCCCcEEEEeCCCCccc
Q 015657           95 KKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~  111 (403)
                      ...++++|||.+..+..
T Consensus        76 ~~~~~viiiDei~~~~~   92 (148)
T smart00382       76 KLKPDVLILDEITSLLD   92 (148)
T ss_pred             hcCCCEEEEECCcccCC
Confidence            55579999999998764

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.35  E-value=3.2e-06  Score=75.89  Aligned_cols=43  Identities=35%  Similarity=0.604  Sum_probs=39.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      +++.+|+++|.+||||||++..|+..+...|.++.+++.|..+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~   44 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR   44 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence            4578999999999999999999999999889999999999654

>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]

Probab=98.35  E-value=1.8e-06  Score=80.85  Aligned_cols=44  Identities=34%  Similarity=0.437  Sum_probs=40.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ....+.|++.|+||+||||.++.||..|++-+.+|++|..||.+
T Consensus        16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH   59 (323)
T KOG2825|consen   16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH   59 (323)
T ss_pred             cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence            44568899999999999999999999999999999999999876

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=3.7e-06  Score=83.97  Aligned_cols=115  Identities=23%  Similarity=0.438  Sum_probs=79.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +..+|+|.|-||.||||+...++..+++++ +|++|.+.    .+..|++..+++.+++..  +....+...+.+.+..+
T Consensus        92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE----ES~~QiklRA~RL~~~~~--~l~l~aEt~~e~I~~~l  164 (456)
T COG1066          92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE----ESLQQIKLRADRLGLPTN--NLYLLAETNLEDIIAEL  164 (456)
T ss_pred             cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC----cCHHHHHHHHHHhCCCcc--ceEEehhcCHHHHHHHH
Confidence            457888899999999999999999999998 99999976    556677777777776531  11222333345555666


Q ss_pred             HhCCCcEEEEeC------------CCCccccHHhHHHHHHHhhhcCCceEEEEEe
Q 015657           94 KKKNVDVVIVDT------------AGRLQIDKAMMDELKDVKRVLNPTEVLLVVD  136 (403)
Q Consensus        94 ~~~~~D~VIIDt------------pg~l~~d~~l~~el~~i~~~~~~~~vllVvd  136 (403)
                      ...++|++|||.            ||....-.+...+|..+++.-+ ..+++|-.
T Consensus       165 ~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~-i~~fiVGH  218 (456)
T COG1066         165 EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKN-IAIFIVGH  218 (456)
T ss_pred             HhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcC-CeEEEEEE
Confidence            667899999997            3333334456666666666654 44455543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.33  E-value=1e-05  Score=71.19  Aligned_cols=35  Identities=34%  Similarity=0.471  Sum_probs=31.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      +.-|.++|.|||||||++.+++..|...|++|.=+
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf   39 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF   39 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence            44589999999999999999999999999998733

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.32  E-value=8.3e-07  Score=80.68  Aligned_cols=131  Identities=18%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +.+.|+++|..|+||||++..|.............-..+ ........-........+......              . 
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~ti~~~~~~~~--------------~-   65 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKN-AFLDKHPEERERGITIDLSFISFE--------------K-   65 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHH-CHHHSSHHHHHCTSSSSSEEEEEE--------------B-
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhcccccccccccccc-ccccccchhhhccccccccccccc--------------c-
Confidence            457899999999999999999997664322111000000 000000000011111111122111              0 


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                      ....+.+.+|||||...    ...++...  ...+|.+++|+|+..+  ......+... ...++ .-+++||+|..
T Consensus        66 ~~~~~~i~~iDtPG~~~----f~~~~~~~--~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~  135 (188)
T PF00009_consen   66 NENNRKITLIDTPGHED----FIKEMIRG--LRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI  135 (188)
T ss_dssp             TESSEEEEEEEESSSHH----HHHHHHHH--HTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS
T ss_pred             cccccceeecccccccc----eeecccce--ecccccceeeeecccccccccccccccccccccc-eEEeeeeccch
Confidence            13678999999999753    22322222  2345899999999543  2222223222 22344 55899999987

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.32  E-value=4.5e-06  Score=77.02  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=58.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh-h--ccCCceEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG-E--QVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~-~--~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      +.+++.++|++|+|||+++..++....+.|.+|++++++-+.+..+.+..... +  ..++.++...........+....
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~   90 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS   90 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence            35899999999999999999999999888999999999854444333321100 0  12223332211111111233333


Q ss_pred             HHHHhCCCcEEEEeCCCCc
Q 015657           91 EEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l  109 (403)
                      ..+.+..+++||||+-..+
T Consensus        91 ~~~~~~~~~lvVIDSis~l  109 (209)
T TIGR02237        91 KFIDRDSASLVVVDSFTAL  109 (209)
T ss_pred             HHHhhcCccEEEEeCcHHH
Confidence            3344446888888886543

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.32  E-value=9.7e-06  Score=70.47  Aligned_cols=93  Identities=22%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHh---hhccCCceEeCCCCCCHHH-HHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL---GEQVGVPVYTAGTEVKPSQ-IAKQGLEE   92 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~---~~~~gv~v~~~~~~~~~~~-~~~~~l~~   92 (403)
                      +++|+|++|+||||++..++..+...|.+|++++++.........+...   ....+..++.......... ........
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL   80 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence            3688999999999999999999999999999999986655443332111   1112233333322222222 22222333


Q ss_pred             HHhCCCcEEEEeCCCCc
Q 015657           93 AKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l  109 (403)
                      +...+++++|||.+..+
T Consensus        81 ~~~~~~~~lviDe~~~~   97 (165)
T cd01120          81 RERGGDDLIILDELTRL   97 (165)
T ss_pred             HhCCCCEEEEEEcHHHH
Confidence            33467889999988864

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.31  E-value=2.1e-05  Score=71.63  Aligned_cols=65  Identities=26%  Similarity=0.403  Sum_probs=37.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                      .++.+.|+||||...+..    .....  ...++.+++|+|+..+  .......... ....+ .-+++||+|..
T Consensus        63 ~~~~~~l~DtpG~~~~~~----~~~~~--~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~  130 (194)
T cd01891          63 KDTKINIVDTPGHADFGG----EVERV--LSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP  130 (194)
T ss_pred             CCEEEEEEECCCcHHHHH----HHHHH--HHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCC
Confidence            467899999999753221    11111  1235888999998542  2222222222 22333 45889999974

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.31  E-value=7.9e-06  Score=82.71  Aligned_cols=117  Identities=20%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .+|+++|.|.|||||+-..|+      |.++.+|+-=   |+...          -.+|.                .+++
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D~---pGvTR----------Dr~y~----------------~~~~   48 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSDT---PGVTR----------DRIYG----------------DAEW   48 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHh------CCeeeEeecC---CCCcc----------CCccc----------------eeEE
Confidence            468999999999999999999      9999888721   11100          01111                1124


Q ss_pred             CCCcEEEEeCCCCcccc-HHhHHHHHH--HhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQID-KAMMDELKD--VKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d-~~l~~el~~--i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .+..+.+|||+|....+ ..+...+..  ...+-.+|-+++|+|+..|  ..-..+++.+...-+..-+|+||+|+.
T Consensus        49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~  125 (444)
T COG1160          49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL  125 (444)
T ss_pred             cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence            57789999999987544 223222222  2223346889999999654  233333444444335566999999987

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=98.29  E-value=1.7e-06  Score=88.32  Aligned_cols=168  Identities=24%  Similarity=0.379  Sum_probs=102.8

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh---------------HHHH-HHhhhcc----------
Q 015657           17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---------------IDQL-VILGEQV----------   69 (403)
Q Consensus        17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~---------------~~~l-~~~~~~~----------   69 (403)
                      .|++.|. +.+|||++++.|++.|+++|++|.     |+++..               ..|+ ..++...          
T Consensus         3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~-----PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvL   77 (486)
T COG1492           3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVA-----PFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVL   77 (486)
T ss_pred             ccEEEeccCCcchhhhhhhhhHHHHhcCCccC-----CCchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEE
Confidence            5788999 999999999999999999999998     655332               1111 1111110          


Q ss_pred             -------CCceEeCCCC---CCHHH-----------HHHHHHHHHHhCCCcEEEEeCCCCccc----cHHhHHHHHHHhh
Q 015657           70 -------GVPVYTAGTE---VKPSQ-----------IAKQGLEEAKKKNVDVVIVDTAGRLQI----DKAMMDELKDVKR  124 (403)
Q Consensus        70 -------gv~v~~~~~~---~~~~~-----------~~~~~l~~~~~~~~D~VIIDtpg~l~~----d~~l~~el~~i~~  124 (403)
                             +..++..+..   .++.+           .+.+.++.+ ...||+|+++++|....    +.++..  ..+..
T Consensus        78 LKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l-~~~~d~Vv~EGAGSpaEiNlr~~Di~N--m~~a~  154 (486)
T COG1492          78 LKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL-DREYDVVVIEGAGSPAEINLRDRDIAN--MGVAE  154 (486)
T ss_pred             EeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHh-hhcccEEEEecCCChhhcCcccccccc--eeeeh
Confidence                   1122222211   11111           234555555 47899999999998642    111111  11222


Q ss_pred             hcCCceEEEEEecccHHHHHHHH---HHh--hhcCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657          125 VLNPTEVLLVVDAMTGQEAAALV---TTF--NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       125 ~~~~~~vllVvda~~g~~~~~~~---~~~--~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      ..+ .++++|.|-..|-....+.   ..+  ..+-.+.|+|+||++++..  ...+..+.+.+|.|+  +|..|..++
T Consensus       155 ~~d-apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~v--lGv~P~~~~  229 (486)
T COG1492         155 IAD-APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPV--LGVLPYLKD  229 (486)
T ss_pred             hcC-CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhhCCee--Eeecccccc
Confidence            232 6889999875442222222   111  2345789999999998753  355667777899999  898888765

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.28  E-value=1.2e-05  Score=71.84  Aligned_cols=125  Identities=16%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |+++|.+|+||||+...|.......++...+.+........ +.      ..++......             ..+....
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~-------------~~~~~~~   61 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE-ER------ERGITIKSGV-------------ATFEWPD   61 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH-HH------HcCCCeecce-------------EEEeeCC
Confidence            78999999999999999886654444444333322111111 11      1111111000             0001136


Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ++++++||||...........      ...++.+++|+|+..+  .............-...-+++||+|...
T Consensus        62 ~~~~liDtpG~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~  128 (189)
T cd00881          62 RRVNFIDTPGHEDFSSEVIRG------LSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG  128 (189)
T ss_pred             EEEEEEeCCCcHHHHHHHHHH------HHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence            789999999965432221111      1245889999998543  2222222222222233458999999764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=98.27  E-value=7e-06  Score=78.81  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=36.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +..+++|+|.+|+||||+|..++...+++|.+|++++.+.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee   74 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES   74 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence            4588999999999999999999999988999999999983

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.27  E-value=7.1e-06  Score=73.95  Aligned_cols=41  Identities=24%  Similarity=0.248  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      +++|.|++|+|||+++..++....+.|.+|++++.+.....
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~   41 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEE   41 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHH
Confidence            36889999999999999999999999999999998854333

A related protein is found in archaea.

>cd01394 radB RadB

Probab=98.27  E-value=6.7e-06  Score=76.47  Aligned_cols=43  Identities=30%  Similarity=0.363  Sum_probs=38.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      +.+++.++|.+|+||||++..+|..++.+|.+|++++++...+
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~   60 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSS   60 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            3588999999999999999999999999999999999985444

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.26  E-value=7.3e-06  Score=76.65  Aligned_cols=45  Identities=29%  Similarity=0.425  Sum_probs=39.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      +..++.++|++|+||||++..++..+++.|.+|++++++...+..
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r   66 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPER   66 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHH
Confidence            358999999999999999999999999999999999999433333

>TIGR02012 tigrfam_recA protein RecA

Probab=98.24  E-value=7.8e-06  Score=80.57  Aligned_cols=90  Identities=20%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l   90 (403)
                      +.+++.|+|++|+||||+|..++...++.|.+|++||+.-.    .++.  .....|++   ++.... ....+.+....
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~----~~~~--~a~~lGvd~~~l~v~~p-~~~eq~l~~~~  126 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA----LDPV--YARKLGVDIDNLLVSQP-DTGEQALEIAE  126 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch----hHHH--HHHHcCCCHHHeEEecC-CCHHHHHHHHH
Confidence            34899999999999999999999999999999999988621    1111  22233332   121211 12223332222


Q ss_pred             HHHHhCCCcEEEEeCCCCcc
Q 015657           91 EEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~  110 (403)
                      ..++...+++||||+...+.
T Consensus       127 ~li~~~~~~lIVIDSv~al~  146 (321)
T TIGR02012       127 TLVRSGAVDIIVVDSVAALV  146 (321)
T ss_pred             HHhhccCCcEEEEcchhhhc
Confidence            23344679999999987653

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.23  E-value=4.1e-05  Score=84.01  Aligned_cols=136  Identities=22%  Similarity=0.149  Sum_probs=76.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.++|||||+..+|.      |.+.. + .+               ..|..+......             +..
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-v-gn---------------~pGvTve~k~g~-------------~~~   47 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLT------GARQR-V-GN---------------WAGVTVERKEGQ-------------FST   47 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHh------CCCCc-c-CC---------------CCCceEeeEEEE-------------EEc
Confidence            458999999999999998885      33221 1 11               011111100000             012


Q ss_pred             CCCcEEEEeCCCCccccH----HhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDK----AMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~----~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      .++++.++||||......    ....|.  ......-.+|-+++|+|+...+..........+.-...-+++||+|...+
T Consensus        48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~  127 (772)
T PRK09554         48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK  127 (772)
T ss_pred             CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence            567899999999865421    111111  11111225789999999976544433333333222345589999997533


Q ss_pred             h---hHHHHHHHHhCCCeEEe
Q 015657          170 G---GAALSVKEVSGKPIKLV  187 (403)
Q Consensus       170 ~---~~~~~~~~~~g~pi~fi  187 (403)
                      .   .....+.+.+|+|+..+
T Consensus       128 ~~i~id~~~L~~~LG~pVvpi  148 (772)
T PRK09554        128 QNIRIDIDALSARLGCPVIPL  148 (772)
T ss_pred             cCcHHHHHHHHHHhCCCEEEE
Confidence            2   23455677799998644

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=98.23  E-value=6.1e-05  Score=74.77  Aligned_cols=161  Identities=20%  Similarity=0.254  Sum_probs=99.5

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhh---------------------HHHH----HHhh
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAA---------------------IDQL----VILG   66 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~---------------------~~~l----~~~~   66 (403)
                      +.+++.+.|. ||+|=||+|.++|+.++.+ +..|+++|.|.+.-..                     .+|.    ....
T Consensus       103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~  182 (366)
T COG4963         103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTR  182 (366)
T ss_pred             hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhc
Confidence            4577888766 9999999999999999865 8999999999643111                     1111    0111


Q ss_pred             hccCCceEeCCCCCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--
Q 015657           67 EQVGVPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--  139 (403)
Q Consensus        67 ~~~gv~v~~~~~~~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--  139 (403)
                      ...+..+++........     ..+.+.++.+ ...||+||+|-|-...   +...   .+  ....+++++|++...  
T Consensus       183 ~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~-~~~~~~vV~Dlp~~~~---~~t~---~v--L~~Sd~iviv~e~sl~s  253 (366)
T COG4963         183 LASGLKLLAAPTELAKNYDLKTGAVERLLDLL-RGSFDFVVVDLPNIWT---DWTR---QV--LSGSDEIVIVAEPSLAS  253 (366)
T ss_pred             cCCCceeecCCcchhhhcccccchHHHHHHHh-hccCCeEEEcCCCccc---hHHH---HH--HhcCCeEEEEecccHHH
Confidence            22345555544332211     2234555555 3689999999993222   2111   11  224589999998732  


Q ss_pred             ---HHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          140 ---GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       140 ---g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                         +.+.....+.+...-...-+|+|+++...... ...+.+.++++-
T Consensus       254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~-~~dl~~~~~i~~  300 (366)
T COG4963         254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE-PSDLEEILGIES  300 (366)
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC-HHHHHHHhCCch
Confidence               24444555556555556669999998766555 555666666654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.19  E-value=2.2e-05  Score=73.89  Aligned_cols=96  Identities=21%  Similarity=0.306  Sum_probs=59.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc------c-CCceEeCC------CCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ------V-GVPVYTAG------TEV   80 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~------~-gv~v~~~~------~~~   80 (403)
                      +..+++++|.+|+||||++..++....++|.+|++++++-.......++...+-.      . .+.++...      ...
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~  103 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST  103 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence            4688999999999999999999988878899999999983322222332221100      0 11122111      011


Q ss_pred             CHHHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657           81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l  109 (403)
                      .....+....+.+...+++++|||.+..+
T Consensus       104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~  132 (234)
T PRK06067        104 LANKLLELIIEFIKSKREDVIIIDSLTIF  132 (234)
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEecHHHH
Confidence            12333444444444458999999998843

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=98.19  E-value=3.9e-06  Score=74.37  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      |+.++|..||||||++.+|+..|..+|++|.++..|..
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~   38 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHH   38 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            57899999999999999999999999999999987643

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.17  E-value=1.4e-05  Score=78.86  Aligned_cols=160  Identities=18%  Similarity=0.195  Sum_probs=89.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-HHHhhhccCCceEe-------CCCCCCHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-LVILGEQVGVPVYT-------AGTEVKPSQIAK   87 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-l~~~~~~~gv~v~~-------~~~~~~~~~~~~   87 (403)
                      .+.+++|.=||||||+..+|.....  |+|+.++-.+ ++.-.+|. .  .-...+..++.       .....+-.....
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNE-fGEvgID~~~--~l~~~~e~~~El~nGCICCT~r~dl~~~~~   76 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNE-FGEVGIDGGA--LLSDTGEEVVELTNGCICCTVRDDLLPALE   76 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEec-CccccccCCC--ccccCCccEEEeCCceEEEeccchhHHHHH
Confidence            4678999999999999999887666  8999888766 33333331 1  00111222222       211112333344


Q ss_pred             HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHH---HHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCe-eEEEEc
Q 015657           88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK---DVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGI-TGAILT  162 (403)
Q Consensus        88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~---~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i-~GvIlN  162 (403)
                      +... . ...+|+|||+|.|.... ...+....   .+...+.-+.++-|||+........ ....+..++.. .-||+|
T Consensus        77 ~L~~-~-~~~~D~ivIEtTGlA~P-~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlN  153 (323)
T COG0523          77 RLLR-R-RDRPDRLVIETTGLADP-APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLN  153 (323)
T ss_pred             HHHh-c-cCCCCEEEEeCCCCCCC-HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEe
Confidence            4444 3 46799999999997642 22222211   2233334477899999954432222 33333344433 338999


Q ss_pred             cCCCCCchh--HHHHHHHHhCCC
Q 015657          163 KLDGDSRGG--AALSVKEVSGKP  183 (403)
Q Consensus       163 k~D~~~~~~--~~~~~~~~~g~p  183 (403)
                      |+|......  .+.......+..
T Consensus       154 K~Dlv~~~~l~~l~~~l~~lnp~  176 (323)
T COG0523         154 KTDLVDAEELEALEARLRKLNPR  176 (323)
T ss_pred             cccCCCHHHHHHHHHHHHHhCCC
Confidence            999766553  223344445443

>PRK12736 elongation factor Tu; Reviewed

Probab=98.17  E-value=5.8e-05  Score=76.86  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=67.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ++...|+++|+.++||||++..|.......|........      ..+.. ......|+.+-.....             
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~------~~d~~-~~E~~rg~T~~~~~~~-------------   69 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYD------SIDAA-PEEKERGITINTAHVE-------------   69 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchh------hhcCC-HHHHhcCccEEEEeeE-------------
Confidence            345668999999999999999998766554432211000      01111 1111223332211110             


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      +..+++.+++|||||..    ..+..+  +.....+|.+++|+|+..+  ......+.... ..++..-+++||+|..
T Consensus        70 ~~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~  141 (394)
T PRK12736         70 YETEKRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV  141 (394)
T ss_pred             ecCCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence            11246789999999953    222222  2222345889999999543  22222222221 2233233679999965

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.17  E-value=8.8e-05  Score=67.84  Aligned_cols=118  Identities=20%  Similarity=0.260  Sum_probs=64.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.+|+||||+...|.      |.++.....+  .+...       .  .......                 ...
T Consensus         2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~--~~~~T-------~--~~~~~~~-----------------~~~   47 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTIL------GREVFESKLS--ASSVT-------K--TCQKESA-----------------VWD   47 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhh------CCCccccccC--CCCcc-------c--ccceeeE-----------------EEC
Confidence            47899999999999999887      5555322211  00000       0  0000000                 024


Q ss_pred             CCcEEEEeCCCCcccc---HHhHHHHHHHhhh--cCCceEEEEEeccc-HHHHHHHHHH----hhhc-CCeeEEEEccCC
Q 015657           97 NVDVVIVDTAGRLQID---KAMMDELKDVKRV--LNPTEVLLVVDAMT-GQEAAALVTT----FNIE-IGITGAILTKLD  165 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d---~~l~~el~~i~~~--~~~~~vllVvda~~-g~~~~~~~~~----~~~~-~~i~GvIlNk~D  165 (403)
                      +..++||||||.....   .....++......  ..++.+++|+++.. .+.....++.    |.+. ....-+++|+.|
T Consensus        48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d  127 (196)
T cd01852          48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD  127 (196)
T ss_pred             CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence            6789999999987542   2333333332222  24577899998742 2222223322    3322 244568899998


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      .-.
T Consensus       128 ~l~  130 (196)
T cd01852         128 DLE  130 (196)
T ss_pred             ccC
Confidence            543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.15  E-value=1.4e-05  Score=78.90  Aligned_cols=88  Identities=18%  Similarity=0.225  Sum_probs=56.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l~   91 (403)
                      .+++.|.|++|+||||+|..++...++.|.+|++||+.-. +. ...    ....|++   ++... .....+.+.....
T Consensus        55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~-~~-~~~----a~~lGvd~~~l~v~~-p~~~eq~l~i~~~  127 (325)
T cd00983          55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA-LD-PVY----AKKLGVDLDNLLISQ-PDTGEQALEIADS  127 (325)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc-HH-HHH----HHHcCCCHHHheecC-CCCHHHHHHHHHH
Confidence            4889999999999999999999999999999999998621 11 111    2222332   11111 1123333322222


Q ss_pred             HHHhCCCcEEEEeCCCCc
Q 015657           92 EAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l  109 (403)
                      .++...+++||||+...+
T Consensus       128 li~s~~~~lIVIDSvaal  145 (325)
T cd00983         128 LVRSGAVDLIVVDSVAAL  145 (325)
T ss_pred             HHhccCCCEEEEcchHhh
Confidence            334567999999997755

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01894 EngA1 EngA1 subfamily

Probab=98.15  E-value=5.6e-05  Score=65.28  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             EEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCC
Q 015657           19 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV   98 (403)
Q Consensus        19 ~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~   98 (403)
                      +++|.+|+||||+...|+      +.+...+...+.  ...          .......                 ...++
T Consensus         1 ~l~G~~~~GKssl~~~l~------~~~~~~~~~~~~--~t~----------~~~~~~~-----------------~~~~~   45 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLT------GRRDAIVEDTPG--VTR----------DRIYGEA-----------------EWGGR   45 (157)
T ss_pred             CccCCCCCCHHHHHHHHh------CCcEEeecCCCC--cee----------CceeEEE-----------------EECCe
Confidence            468999999999998887      444433332210  000          0000000                 01457


Q ss_pred             cEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           99 DVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        99 D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      ++.|+||||...........+...  ......+.+++|+|+...  .........+...-...-+|+||+|.....
T Consensus        46 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~  121 (157)
T cd01894          46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE  121 (157)
T ss_pred             EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChH
Confidence            899999999865432111111111  112235788999998432  111122222222223445899999976543

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.14  E-value=3.5e-06  Score=78.25  Aligned_cols=38  Identities=24%  Similarity=0.387  Sum_probs=35.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .+|+|+|||||||-+..+...|...|++|.+|..||..
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN   42 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN   42 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence            47889999999999999999999999999999999754

>PRK04296 thymidine kinase; Provisional

Probab=98.14  E-value=1.5e-05  Score=72.90  Aligned_cols=87  Identities=18%  Similarity=0.210  Sum_probs=55.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec--cCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG--DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~--D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+++++|+.|+||||++..++..+..+|++|+++..  |. +...    .......|+++... ......+.+....+  
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~-~~~~~~~~~~~~~~--   74 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAI-PVSSDTDIFELIEE--   74 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccce-EeCChHHHHHHHHh--
Confidence            678999999999999999999999989999999843  42 1111    11223334332210 01122233222222  


Q ss_pred             HhCCCcEEEEeCCCCcc
Q 015657           94 KKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~  110 (403)
                      ...++|+||||-+..+.
T Consensus        75 ~~~~~dvviIDEaq~l~   91 (190)
T PRK04296         75 EGEKIDCVLIDEAQFLD   91 (190)
T ss_pred             hCCCCCEEEEEccccCC
Confidence            34589999999997763

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.13  E-value=3.7e-05  Score=72.53  Aligned_cols=97  Identities=22%  Similarity=0.283  Sum_probs=63.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc-------CCceEeCCC-CC---CH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV-------GVPVYTAGT-EV---KP   82 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~-------gv~v~~~~~-~~---~~   82 (403)
                      +..+++++|.+|+||||++.+++..+.++|.++++++++.......+++..++...       .+.++.... ..   ..
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~  102 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK  102 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence            34689999999999999999999999889999999998876665555543222111       111111111 11   11


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657           83 SQIAKQGLEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        83 ~~~~~~~l~~~~~~~~D~VIIDtpg~l~  110 (403)
                      ...+.+.+......++++++||.+....
T Consensus       103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l  130 (230)
T PRK08533        103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI  130 (230)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence            2334444555444578999999988643

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.13  E-value=9.1e-06  Score=73.20  Aligned_cols=41  Identities=29%  Similarity=0.314  Sum_probs=36.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ...+.++.|+|..||||||++.+|...|..+|++|..|.-+
T Consensus         3 ~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~   43 (173)
T PRK10751          3 KTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT   43 (173)
T ss_pred             CCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence            34677999999999999999999999999999999998764

>PLN03127 Elongation factor Tu; Provisional

Probab=98.11  E-value=5.3e-05  Score=78.31  Aligned_cols=128  Identities=20%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      ++...|+++|..++||||++.+|..+..+.|..-...  .+|...         .....|+.+-....            
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~---------~E~~rGiTi~~~~~------------  117 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP---------EEKARGITIATAHV------------  117 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh---------hHhhcCceeeeeEE------------
Confidence            3445688899999999999999987766555431111  223111         01112222111100            


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                       .+..+++.+++|||||....    +..+..  .+..+|.+++|+|+..+  ......+.... ..++..-+++||+|..
T Consensus       118 -~~~~~~~~i~~iDtPGh~~f----~~~~~~--g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv  190 (447)
T PLN03127        118 -EYETAKRHYAHVDCPGHADY----VKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV  190 (447)
T ss_pred             -EEcCCCeEEEEEECCCccch----HHHHHH--HHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence             01124678999999997532    222221  22246899999999543  12222222211 2233233679999975


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       191 ~  191 (447)
T PLN03127        191 D  191 (447)
T ss_pred             C
Confidence            4

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.11  E-value=1.4e-05  Score=69.50  Aligned_cols=50  Identities=32%  Similarity=0.515  Sum_probs=43.9

Q ss_pred             cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657            9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus         9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      ++-+++.-+|+++|++||||||+|++|..+|-.+|+-..++|+|..|.+.
T Consensus        25 ~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL   74 (207)
T KOG0635|consen   25 KLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL   74 (207)
T ss_pred             HHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence            34456678899999999999999999999999999999999999877554

>cd04167 Snu114p Snu114p subfamily

Probab=98.10  E-value=2.2e-05  Score=72.92  Aligned_cols=65  Identities=22%  Similarity=0.255  Sum_probs=37.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||...+......      .....+.+++|+|+..+.  .......... ... ..-+|+||+|..
T Consensus        69 ~~~~i~iiDtpG~~~f~~~~~~------~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~-p~iiviNK~D~~  136 (213)
T cd04167          69 KSYLFNIIDTPGHVNFMDEVAA------ALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGL-PIVLVINKIDRL  136 (213)
T ss_pred             CEEEEEEEECCCCcchHHHHHH------HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCC-CEEEEEECcccC
Confidence            3578999999997643222111      122358899999995442  2222222221 222 344899999963

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.09  E-value=4.6e-05  Score=73.19  Aligned_cols=147  Identities=18%  Similarity=0.221  Sum_probs=81.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~   91 (403)
                      +..+++++|.+|+||||++.+++..++.. |.+|++++++.-.......+.  ....++++..... .....+.+..++.
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL--GQYAGKRLHLPDTVFIYTLEEFDAAFD  106 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH--HHHhCCCcccCCccccccHHHHHHHHH
Confidence            34688999999999999999999999877 999999998753222222221  1222333221110 1112233344444


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--------H-------HHHHHHHHhhhcCCe
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--------Q-------EAAALVTTFNIEIGI  156 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--------~-------~~~~~~~~~~~~~~i  156 (403)
                      .+. ..-.+.++|+++.... ..+...+..+....  ..-++|+|....        .       .....++.+....++
T Consensus       107 ~~~-~~~~l~i~d~~~~~~~-~~i~~~i~~~~~~~--~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~v  182 (271)
T cd01122         107 EFE-GTGRLFMYDSFGEYSM-DSVLEKVRYMAVSH--GIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGI  182 (271)
T ss_pred             Hhc-CCCcEEEEcCCCccCH-HHHHHHHHHHHhcC--CceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence            442 2234677787765432 23334333333222  234788887111        0       112223445566777


Q ss_pred             eEEEEccCCC
Q 015657          157 TGAILTKLDG  166 (403)
Q Consensus       157 ~GvIlNk~D~  166 (403)
                      ..++++.+..
T Consensus       183 tvll~sq~~~  192 (271)
T cd01122         183 HITLVSHLRR  192 (271)
T ss_pred             EEEEEecccC
Confidence            7788876653

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.09  E-value=3.7e-05  Score=85.45  Aligned_cols=137  Identities=15%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC----cEEEEeccCCChhhHHHHHHhhhccCCceEeCCC---C-CCHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---E-VKPS   83 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~----kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~---~-~~~~   83 (403)
                      ....|.|+|+|+.++||||++..|......-..    ...+.|.+       +    .....|+.+.....   + ..+.
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~-------~----~E~~rgiti~~~~~~~~~~~~~~   84 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR-------A----DEAERGITIKSTGISLYYEMTDE   84 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCc-------H----HHHHhCCceecceeEEEeecccc
Confidence            445788999999999999999999865431101    11111111       1    11112222211100   0 0000


Q ss_pred             HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-H-HHHHHHHHh-hhcCCeeEEE
Q 015657           84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q-EAAALVTTF-NIEIGITGAI  160 (403)
Q Consensus        84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~-~~~~~~~~~-~~~~~i~GvI  160 (403)
                       .++..-...+..++-+.||||||...+-..+...+      ..+|.+++|+|+..| + ......+.. ...++ .-++
T Consensus        85 -~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al------~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~  156 (843)
T PLN00116         85 -SLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLT  156 (843)
T ss_pred             -cccccccccCCCceEEEEECCCCHHHHHHHHHHHH------hhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEE
Confidence             00000000112356778999999865433222221      234899999999655 1 112222222 22333 3589


Q ss_pred             EccCCCC
Q 015657          161 LTKLDGD  167 (403)
Q Consensus       161 lNk~D~~  167 (403)
                      +||+|..
T Consensus       157 iNK~D~~  163 (843)
T PLN00116        157 VNKMDRC  163 (843)
T ss_pred             EECCccc
Confidence            9999976

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.08  E-value=8.1e-05  Score=82.00  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=54.8

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHH-hhhcCCeeEEEEccCCCCCchhHH
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDGDSRGGAA  173 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlNk~D~~~~~~~~  173 (403)
                      .+|++||+++|++...-.--..+.++.+.+. .+++||++...|  .+++-.++. ....+++.|||+|..+    ....
T Consensus       184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~----~~N~  258 (817)
T PLN02974        184 GRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG----LSNE  258 (817)
T ss_pred             cCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc----cchH
Confidence            5899999999998752111111245555555 789999999544  343333333 3567889999999532    2333


Q ss_pred             HHHHHH--hCCCeEEeeccC
Q 015657          174 LSVKEV--SGKPIKLVGRGE  191 (403)
Q Consensus       174 ~~~~~~--~g~pi~fig~ge  191 (403)
                      ..+.+.  .++||..++..|
T Consensus       259 ~~l~~~~~~~~pv~~lp~~p  278 (817)
T PLN02974        259 KALLSYLSNRVPVFVLPPVP  278 (817)
T ss_pred             HHHHHHHhcCCcEEeCCCCC
Confidence            333333  388886554433

>PRK00049 elongation factor Tu; Reviewed

Probab=98.06  E-value=4.1e-05  Score=78.03  Aligned_cols=127  Identities=20%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      +...|+++|..++||||++..|.....+.|..-...  ..|        .. ......|+..-....             
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d--------~~-~~E~~rg~Ti~~~~~-------------   68 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQID--------KA-PEEKARGITINTAHV-------------   68 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhcc--------CC-hHHHhcCeEEeeeEE-------------
Confidence            335588999999999999999998776654311100  111        11 011122322211100             


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      .+..+++.+++|||||..    .+..++..  ....+|.+++|+|+..+  ......+.... ...+..-+++||+|...
T Consensus        69 ~~~~~~~~i~~iDtPG~~----~f~~~~~~--~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~  142 (396)
T PRK00049         69 EYETEKRHYAHVDCPGHA----DYVKNMIT--GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             EEcCCCeEEEEEECCCHH----HHHHHHHh--hhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence            011246789999999964    23333222  22346899999999544  22222222221 12333335789999753

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.06  E-value=5.6e-05  Score=70.93  Aligned_cols=65  Identities=17%  Similarity=0.287  Sum_probs=39.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                      .++.+.|+||||...+.......+      ..++.+++|+|+..+  ......++.. ....+ .-+++||+|..
T Consensus        71 ~~~~i~iiDTPG~~~f~~~~~~~l------~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~  138 (222)
T cd01885          71 NEYLINLIDSPGHVDFSSEVTAAL------RLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRL  138 (222)
T ss_pred             CceEEEEECCCCccccHHHHHHHH------HhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcc
Confidence            368899999999875433222222      234889999999654  2222333322 23343 44899999964

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK09354 recA recombinase A; Provisional

Probab=98.05  E-value=3.2e-05  Score=77.01  Aligned_cols=89  Identities=17%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l~   91 (403)
                      .+++.|+|++|+||||+|..++...++.|.+|++||+.-. +.   +  ......|++   ++.... ....+.+...-.
T Consensus        60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s-~~---~--~~a~~lGvdld~lli~qp-~~~Eq~l~i~~~  132 (349)
T PRK09354         60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA-LD---P--VYAKKLGVDIDNLLVSQP-DTGEQALEIADT  132 (349)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc-hH---H--HHHHHcCCCHHHeEEecC-CCHHHHHHHHHH
Confidence            4889999999999999999999999999999999998621 11   1  122333433   121111 123333322222


Q ss_pred             HHHhCCCcEEEEeCCCCcc
Q 015657           92 EAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~  110 (403)
                      .++...+++||||+...+.
T Consensus       133 li~s~~~~lIVIDSvaaL~  151 (349)
T PRK09354        133 LVRSGAVDLIVVDSVAALV  151 (349)
T ss_pred             HhhcCCCCEEEEeChhhhc
Confidence            3345679999999977653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.04  E-value=3e-05  Score=82.77  Aligned_cols=121  Identities=21%  Similarity=0.314  Sum_probs=68.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEE--EEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKK--QGKSCM--LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVl--lVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      |.|+++|+.++||||++.+|.+....  +...|-  +.|.+        +   .....|+.+......            
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~--------~---~ErerGiTI~~~~~~------------   58 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSN--------D---LERERGITILAKNTA------------   58 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCc--------h---HHHhCCccEEeeeEE------------
Confidence            57899999999999999999864331  111121  11111        1   122345544432111            


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHH-HhhhcCCeeEEEEccCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT-TFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~-~~~~~~~i~GvIlNk~D~~  167 (403)
                       +.+.++.+.||||||...+.    .++.....  .+|.+++|+|+..+  ......+. .....+++ -|++||+|..
T Consensus        59 -v~~~~~kinlIDTPGh~DF~----~ev~~~l~--~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~~  129 (594)
T TIGR01394        59 -IRYNGTKINIVDTPGHADFG----GEVERVLG--MVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDRP  129 (594)
T ss_pred             -EEECCEEEEEEECCCHHHHH----HHHHHHHH--hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCCC
Confidence             12467899999999975432    22222222  34899999999544  11122222 22233443 4899999974

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=98.04  E-value=0.00012  Score=68.98  Aligned_cols=42  Identities=21%  Similarity=0.428  Sum_probs=37.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYR   55 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~r   55 (403)
                      +..+++|+|.+|+||||++.+++..++.. |.+|++++++...
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~   54 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK   54 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence            44789999999999999999999999887 9999999998543

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.03  E-value=2.5e-05  Score=72.34  Aligned_cols=68  Identities=21%  Similarity=0.198  Sum_probs=37.3

Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH-HHHHHHHHhhhcC--CeeEEEEccCCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEI--GITGAILTKLDGDS  168 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~--~i~GvIlNk~D~~~  168 (403)
                      ..+..+.|+||||...+...+.    .  ....++.+++|+|+..+. ........+....  +..-+|+||+|...
T Consensus        74 ~~~~~~~liDTpG~~~~~~~~~----~--~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~  144 (208)
T cd04166          74 TPKRKFIIADTPGHEQYTRNMV----T--GASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD  144 (208)
T ss_pred             cCCceEEEEECCcHHHHHHHHH----H--hhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence            3577899999999643211111    1  123458899999996441 1111111222222  22335799999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.02  E-value=3.6e-05  Score=77.62  Aligned_cols=86  Identities=27%  Similarity=0.477  Sum_probs=56.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCce---EeCCCCCCHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV---YTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v---~~~~~~~~~~~~~~~~l~   91 (403)
                      ..++++.|.+|+||||++..++..+++.|.+|++++.+..    .+++.......++..   +.. ....    +.+.++
T Consensus        82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs----~~qi~~Ra~rlg~~~~~l~l~-~e~~----le~I~~  152 (372)
T cd01121          82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES----PEQIKLRADRLGISTENLYLL-AETN----LEDILA  152 (372)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC----HHHHHHHHHHcCCCcccEEEE-ccCc----HHHHHH
Confidence            5789999999999999999999999998899999998632    234433333334321   111 1111    222333


Q ss_pred             HHHhCCCcEEEEeCCCCc
Q 015657           92 EAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l  109 (403)
                      .+...++++||||.-..+
T Consensus       153 ~i~~~~~~lVVIDSIq~l  170 (372)
T cd01121         153 SIEELKPDLVIIDSIQTV  170 (372)
T ss_pred             HHHhcCCcEEEEcchHHh
Confidence            334468999999986543

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.02  E-value=2.6e-05  Score=81.51  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=64.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc-----------eEeC-CCCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-----------VYTA-GTEVK   81 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-----------v~~~-~~~~~   81 (403)
                      +..+++++|++|+||||++..+++..+++|.+|+++..+-..    +++....+..|++           +... .....
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~----~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~  337 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESR----AQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG  337 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCH----HHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence            458899999999999999999999999999999999988443    3333333333332           2221 12234


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l  109 (403)
                      +.+.+...++.+...++++|+||+-..+
T Consensus       338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~  365 (484)
T TIGR02655       338 LEDHLQIIKSEIADFKPARIAIDSLSAL  365 (484)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence            4566666666666668899999985543

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.02  E-value=1.7e-05  Score=74.11  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      |+++|+.|+||||++.+|.+...
T Consensus         2 v~i~Gh~~~GKttL~~~ll~~~g   24 (219)
T cd01883           2 LVVIGHVDAGKSTTTGHLLYLLG   24 (219)
T ss_pred             EEEecCCCCChHHHHHHHHHHhc
Confidence            68999999999999999986653

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01895 EngA2 EngA2 subfamily

Probab=98.02  E-value=0.00034  Score=61.10  Aligned_cols=74  Identities=22%  Similarity=0.226  Sum_probs=38.9

Q ss_pred             CCCcEEEEeCCCCcccc--HHh---HHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQID--KAM---MDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d--~~l---~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      .+.++.++||||.....  ...   ......+.....++.+++|+|+...  .............-...-+++||+|...
T Consensus        48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~  127 (174)
T cd01895          48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE  127 (174)
T ss_pred             CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence            35678999999964320  001   1111122222345889999998432  2222323322222233458999999754


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       128 ~  128 (174)
T cd01895         128 K  128 (174)
T ss_pred             c
Confidence            4

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05973 replicative DNA helicase; Provisional

Probab=98.02  E-value=5.8e-05  Score=71.39  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=38.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      +..+++|.|.+|+||||++.+++...+++|++|++++++-.....
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i  107 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV  107 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence            347889999999999999999999998899999999988543333

>CHL00071 tufA elongation factor Tu

Probab=98.01  E-value=7.2e-05  Score=76.52  Aligned_cols=130  Identities=21%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ++...|+++|..++||||++..|...+..-..+.....      +..++. ......|+.+-....             .
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~------~~~d~~-~~e~~rg~T~~~~~~-------------~   69 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKY------DEIDSA-PEEKARGITINTAHV-------------E   69 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccccc------ccccCC-hhhhcCCEeEEccEE-------------E
Confidence            44466899999999999999999866542111111000      011111 111222332221100             0


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      +..+++.+++|||||..    .+...+  +..+..+|.+++|+|+..+  ......+.... ..++..-+++||+|...
T Consensus        70 ~~~~~~~~~~iDtPGh~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~  142 (409)
T CHL00071         70 YETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD  142 (409)
T ss_pred             EccCCeEEEEEECCChH----HHHHHH--HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence            11256789999999943    223322  2222345899999999543  22222222222 22332336799999754

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.01  E-value=7.4e-05  Score=62.15  Aligned_cols=110  Identities=20%  Similarity=0.273  Sum_probs=59.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |++.|.+|+||||+...|.      |.+...+...   +..     +.....  ..+.                   ..+
T Consensus         2 V~iiG~~~~GKSTlin~l~------~~~~~~~~~~---~~~-----T~~~~~--~~~~-------------------~~~   46 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALT------GKKLAKVSNI---PGT-----TRDPVY--GQFE-------------------YNN   46 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHH------TSTSSEESSS---TTS-----SSSEEE--EEEE-------------------ETT
T ss_pred             EEEECCCCCCHHHHHHHHh------cccccccccc---ccc-----eeeeee--eeee-------------------ece
Confidence            6889999999999998887      4333222211   111     000000  0000                   145


Q ss_pred             CcEEEEeCCCCccccHHhH--HHHHHHhh-hcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEcc
Q 015657           98 VDVVIVDTAGRLQIDKAMM--DELKDVKR-VLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTK  163 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~--~el~~i~~-~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk  163 (403)
                      ..++|+||||.......-.  .....+.. .-..+-+++|+|+...  ......+..+. .-...-+|+||
T Consensus        47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK  116 (116)
T PF01926_consen   47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK  116 (116)
T ss_dssp             EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred             eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence            6789999999865422111  11112222 2234778999998543  33444444454 44455588887

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK12735 elongation factor Tu; Reviewed

Probab=98.01  E-value=7.9e-05  Score=75.94  Aligned_cols=131  Identities=21%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             ccCCCC-EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657           10 FAKSRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA   86 (403)
Q Consensus        10 ~~~~~~-~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~   86 (403)
                      |...+| ..|+++|..++||||++..|...+...|..-...  ..|        +. ......|+.+-.....       
T Consensus         6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d--------~~-~~E~~rGiT~~~~~~~-------   69 (396)
T PRK12735          6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQID--------NA-PEEKARGITINTSHVE-------   69 (396)
T ss_pred             cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhcc--------CC-hhHHhcCceEEEeeeE-------
Confidence            333344 5588899999999999999987665554211100  111        11 1112223322211100       


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEcc
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTK  163 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk  163 (403)
                            +..++..+++|||||..    .+...+.  ..+..+|.+++|+|+..+  ......+.... ..++..-+++||
T Consensus        70 ------~~~~~~~i~~iDtPGh~----~f~~~~~--~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK  137 (396)
T PRK12735         70 ------YETANRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK  137 (396)
T ss_pred             ------EcCCCcEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEe
Confidence                  11245679999999963    2222221  223356888999999543  22222222221 223333346899


Q ss_pred             CCCCC
Q 015657          164 LDGDS  168 (403)
Q Consensus       164 ~D~~~  168 (403)
                      +|...
T Consensus       138 ~Dl~~  142 (396)
T PRK12735        138 CDMVD  142 (396)
T ss_pred             cCCcc
Confidence            99753

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.01  E-value=1.8e-05  Score=86.47  Aligned_cols=128  Identities=16%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC----cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~----kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~   88 (403)
                      ...+.|+++|..|+||||++..|......-.+    +..+.|.+   +..        ...++.+.......        
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~---~~e--------~~rg~Ti~~~~~~~--------   77 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFD---EQE--------QERGITINAANVSM--------   77 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCC---HHH--------Hhhcchhhccccee--------
Confidence            34688999999999999999999864321111    11111211   000        00111111000000        


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHH-hhhcCCeeEEEEccCC
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLD  165 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlNk~D  165 (403)
                       ...+.+.+|+++||||||...+.......+      ...|.+++|+|+..+  ......... .....++. +++||+|
T Consensus        78 -~~~~~~~~~~i~liDTPG~~~f~~~~~~al------~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD  149 (720)
T TIGR00490        78 -VHEYEGNEYLINLIDTPGHVDFGGDVTRAM------RAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVD  149 (720)
T ss_pred             -EEeecCCceEEEEEeCCCccccHHHHHHHH------HhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChh
Confidence             000124689999999999875433322222      234899999999654  222222322 23344544 8999999


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      ..
T Consensus       150 ~~  151 (720)
T TIGR00490       150 RL  151 (720)
T ss_pred             cc
Confidence            64

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=98.00  E-value=7.5e-05  Score=74.57  Aligned_cols=121  Identities=16%  Similarity=0.236  Sum_probs=69.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-HHHhhhcc---CCceEeCCC--CCC-HHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-LVILGEQV---GVPVYTAGT--EVK-PSQIAK   87 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-l~~~~~~~---gv~v~~~~~--~~~-~~~~~~   87 (403)
                      ..+.+++|.-||||||+..+|...  .+|.++.++-.|.-... +|. +.......   .-.++....  -.. -..-+.
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~-ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~   80 (341)
T TIGR02475         4 IPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLG-IDGEILKACGIEGCSEENIVELANGCICCTVADDFI   80 (341)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCcccc-chHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence            457899999999999999998864  36899999998854332 332 21111000   012332221  111 112233


Q ss_pred             HHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEeccc
Q 015657           88 QGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT  139 (403)
Q Consensus        88 ~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~  139 (403)
                      .++..+.  ...+|+|||+|.|.-. ...++..+.  .+...+.-+.++-|||+..
T Consensus        81 ~~l~~l~~~~~~~d~IvIEtsG~a~-P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~  135 (341)
T TIGR02475        81 PTMTKLLARRQRPDHILIETSGLAL-PKPLVQAFQWPEIRSRVTVDGVVTVVDGPA  135 (341)
T ss_pred             HHHHHHHhccCCCCEEEEeCCCCCC-HHHHHHHhcCccccceEEeeeEEEEEECch
Confidence            4444442  3579999999999753 233333331  2222334477899999953

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=2.7e-05  Score=80.09  Aligned_cols=147  Identities=20%  Similarity=0.288  Sum_probs=96.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+.|-+.|+.+--=||||++-.|....   |    .++.+..+....|.+. +....|+.+-.-.....-        ..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~t---g----~i~~~~~q~q~LDkl~-vERERGITIkaQtasify--------~~  121 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELT---G----TIDNNIGQEQVLDKLQ-VERERGITIKAQTASIFY--------KD  121 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHh---C----CCCCCCchhhhhhhhh-hhhhcCcEEEeeeeEEEE--------Ec
Confidence            345788888999999999998776433   3    5666666666666663 445667765533221100        00


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCCC-
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~~-  168 (403)
                        ...|-+.+|||||...+..+....+..      ++.++|||||..|   |+..+....|..++.+. .|+||+|... 
T Consensus       122 --~~~ylLNLIDTPGHvDFs~EVsRslaa------c~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDlp~a  192 (650)
T KOG0462|consen  122 --GQSYLLNLIDTPGHVDFSGEVSRSLAA------CDGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDLPSA  192 (650)
T ss_pred             --CCceEEEeecCCCcccccceehehhhh------cCceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCCCCC
Confidence              135899999999998876666555432      4899999999665   66666667777766654 7899999642 


Q ss_pred             ch-hHHHHHHHHhCCCe
Q 015657          169 RG-GAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~~-~~~~~~~~~~g~pi  184 (403)
                      .. .....+.+.++.|-
T Consensus       193 dpe~V~~q~~~lF~~~~  209 (650)
T KOG0462|consen  193 DPERVENQLFELFDIPP  209 (650)
T ss_pred             CHHHHHHHHHHHhcCCc
Confidence            33 33344555565543

>PHA02542 41 41 helicase; Provisional

Probab=97.99  E-value=0.00012  Score=76.21  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=37.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      ...+++.|.||+||||++.++|...++.|++|++++++....
T Consensus       190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~  231 (473)
T PHA02542        190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE  231 (473)
T ss_pred             CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence            467888899999999999999999988899999999996543

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.99  E-value=0.00014  Score=68.87  Aligned_cols=41  Identities=27%  Similarity=0.302  Sum_probs=36.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +..+++|+|.+|+||||++..+++...++|.+|++|..+-.
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~   60 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH   60 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence            45889999999999999999999887788999999998853

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd01890 LepA LepA subfamily

Probab=97.99  E-value=0.00017  Score=64.27  Aligned_cols=81  Identities=20%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCCCCch--
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGDSRG--  170 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~~~~~--  170 (403)
                      .++.+.|+||||......    .....  ...++.+++|+|+..+.  ......... ....+ .-+|+||+|.....  
T Consensus        65 ~~~~~~l~Dt~G~~~~~~----~~~~~--~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~  137 (179)
T cd01890          65 QEYLLNLIDTPGHVDFSY----EVSRS--LAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADPE  137 (179)
T ss_pred             CcEEEEEEECCCChhhHH----HHHHH--HHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCHH
Confidence            467889999999754321    11111  12358899999995431  222222222 22333 45899999974321  


Q ss_pred             hHHHHHHHHhCCC
Q 015657          171 GAALSVKEVSGKP  183 (403)
Q Consensus       171 ~~~~~~~~~~g~p  183 (403)
                      .....+.+..+.+
T Consensus       138 ~~~~~~~~~~~~~  150 (179)
T cd01890         138 RVKQQIEDVLGLD  150 (179)
T ss_pred             HHHHHHHHHhCCC
Confidence            1223444445543

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.99  E-value=5.4e-05  Score=72.05  Aligned_cols=39  Identities=38%  Similarity=0.669  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      +|+++|.+||||||+|..|+.+|...|++|.+++.|..+
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr   39 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR   39 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence            478999999999999999999999889999999888543

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.98  E-value=9.9e-06  Score=76.17  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      ++++.++|..||||||++.+|+..|.++|++|.++..
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~   37 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH   37 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            3689999999999999999999999999999999953

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.98  E-value=5.2e-05  Score=66.53  Aligned_cols=66  Identities=18%  Similarity=0.156  Sum_probs=37.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .++++.|+||||......     +... ....++.+++|+|+..+  ......+..+...-...-+|+||+|..
T Consensus        48 ~~~~~~iiDtpG~~~~~~-----~~~~-~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~  115 (168)
T cd01887          48 KIPGITFIDTPGHEAFTN-----MRAR-GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP  115 (168)
T ss_pred             CcceEEEEeCCCcHHHHH-----HHHH-HHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence            468999999999643211     1110 11235788999998543  222222222222222345889999965

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.98  E-value=3.8e-05  Score=74.16  Aligned_cols=107  Identities=26%  Similarity=0.362  Sum_probs=59.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.|||||||+|..|..+|...+++|.+|+-|        .+. ..  .+. +.....+......++..+.....
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~--------~~~-~~--~~~-y~~~~~Ek~~R~~l~s~v~r~ls   69 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD--------SLG-ID--RND-YADSKKEKEARGSLKSAVERALS   69 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH--------HHH--T--TSS-S--GGGHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc--------ccc-cc--hhh-hhchhhhHHHHHHHHHHHHHhhc
Confidence            3689999999999999999999999999999999855        111 00  011 10111111122334555555543


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM  138 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~  138 (403)
                       .-++||+|..-.+.   .+-.++..+++.......++-+++.
T Consensus        70 -~~~iVI~Dd~nYiK---g~RYelyclAr~~~~~~c~i~~~~~  108 (270)
T PF08433_consen   70 -KDTIVILDDNNYIK---GMRYELYCLARAYGTTFCVIYCDCP  108 (270)
T ss_dssp             -T-SEEEE-S---SH---HHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred             -cCeEEEEeCCchHH---HHHHHHHHHHHHcCCCEEEEEECCC
Confidence             44899999988764   6778888888887754445555554

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=97.97  E-value=5.4e-05  Score=73.03  Aligned_cols=44  Identities=23%  Similarity=0.510  Sum_probs=39.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      .++.+|+|+|.+||||||++..|+..|...+.++.+++.|-|..
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            45678999999999999999999999988888899999998764

>PRK09866 hypothetical protein; Provisional

Probab=97.96  E-value=0.00015  Score=76.78  Aligned_cols=69  Identities=14%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             CCcEEEEeCCCCccccHH-hHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHHHHhhhcC--CeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKA-MMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEI--GITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~-l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~~~--~i~GvIlNk~D~~  167 (403)
                      .+++|+|||||....... +-..+..  .+-..|-+++|+|+..  .......++.....-  ...-+|+||+|..
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~  302 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ  302 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence            578999999999764222 2222222  2334589999999953  222233333332221  1455899999975

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=97.96  E-value=7e-05  Score=64.93  Aligned_cols=91  Identities=18%  Similarity=0.123  Sum_probs=46.5

Q ss_pred             CCcEEEEeCCCCccccHH-hHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch---h
Q 015657           97 NVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG---G  171 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~-l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~---~  171 (403)
                      ++++.|+||||....... .-..+ ......-.++.+++|+|+................-...-+++||+|.....   .
T Consensus        42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~  121 (158)
T cd01879          42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKI  121 (158)
T ss_pred             CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchh
Confidence            468999999997543211 00011 111111246888999999654333333222222122345899999964322   1


Q ss_pred             HHHHHHHHhCCCeEEe
Q 015657          172 AALSVKEVSGKPIKLV  187 (403)
Q Consensus       172 ~~~~~~~~~g~pi~fi  187 (403)
                      ....+....+.|+..+
T Consensus       122 ~~~~~~~~~~~~~~~i  137 (158)
T cd01879         122 DLDKLSELLGVPVVPT  137 (158)
T ss_pred             hHHHHHHhhCCCeEEE
Confidence            2233444556666433

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04171 SelB SelB subfamily

Probab=97.96  E-value=0.00016  Score=62.95  Aligned_cols=67  Identities=21%  Similarity=0.207  Sum_probs=36.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~  169 (403)
                      ++.+.++||||.-..    ...+..  ....++.+++|+|+..+  ........... ......-+++||+|....
T Consensus        50 ~~~~~~~DtpG~~~~----~~~~~~--~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          50 GKRLGFIDVPGHEKF----IKNMLA--GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE  119 (164)
T ss_pred             CcEEEEEECCChHHH----HHHHHh--hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence            567899999996322    111111  12246889999998542  22222111111 122234589999997543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK10218 GTP-binding protein; Provisional

Probab=97.96  E-value=0.0001  Score=78.77  Aligned_cols=123  Identities=23%  Similarity=0.292  Sum_probs=67.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCC-cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~-kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      ..+.|+++|..++||||++..|.....   +.+. .-.+.|.+           ......|+.+......          
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~-----------~~E~erGiTi~~~~~~----------   62 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSN-----------DLEKERGITILAKNTA----------   62 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccc-----------cccccCceEEEEEEEE----------
Confidence            467899999999999999998875321   1110 00112211           1112233333321110          


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHH-HhhhcCCeeEEEEccCCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVT-TFNIEIGITGAILTKLDG  166 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~-~~~~~~~i~GvIlNk~D~  166 (403)
                         +.++++.+.|+||||...+....    ....  -..+.+++|+|+..+.  .....+. .....+++ -+++||+|.
T Consensus        63 ---i~~~~~~inliDTPG~~df~~~v----~~~l--~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~  132 (607)
T PRK10218         63 ---IKWNDYRINIVDTPGHADFGGEV----ERVM--SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDR  132 (607)
T ss_pred             ---EecCCEEEEEEECCCcchhHHHH----HHHH--HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCC
Confidence               11367899999999976543222    2222  2348999999996541  1112222 22334444 489999996


Q ss_pred             C
Q 015657          167 D  167 (403)
Q Consensus       167 ~  167 (403)
                      .
T Consensus       133 ~  133 (607)
T PRK10218        133 P  133 (607)
T ss_pred             C
Confidence            4

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.96  E-value=6.5e-05  Score=67.45  Aligned_cols=40  Identities=35%  Similarity=0.512  Sum_probs=36.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+|.+|+++|++||||||++..|+..|...+..+.+++.|
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d   44 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD   44 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence            3678999999999999999999999999888888888877

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.95  E-value=4.2e-05  Score=68.09  Aligned_cols=40  Identities=33%  Similarity=0.380  Sum_probs=36.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ++++.++|.+||||||++.+|...|..+|++|.+|..|..
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~   40 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH   40 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence            3689999999999999999999999999999999887654

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=97.95  E-value=4e-05  Score=77.86  Aligned_cols=116  Identities=17%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      -|+++|.++|||||+...|.      +.++ .|..-++   +     ++....++  +..                  ..
T Consensus       161 dValVG~PNaGKSTLln~Lt------~~k~-~vs~~p~---T-----T~~p~~Gi--v~~------------------~~  205 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVS------AAKP-KVADYPF---T-----TLVPNLGV--VRV------------------DD  205 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHh------CCcc-cccCCCC---C-----ccCcEEEE--EEe------------------CC
Confidence            58899999999999998887      3344 2221111   1     11122221  111                  01


Q ss_pred             CCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEeccc------HHHHHHHHH---Hhhhc--CCeeEEEEc
Q 015657           97 NVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMT------GQEAAALVT---TFNIE--IGITGAILT  162 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~------g~~~~~~~~---~~~~~--~~i~GvIlN  162 (403)
                      ...++++||||.+.-.   ..+...  -+..+-.++.+++|+|+..      .++......   .+...  -...-+|+|
T Consensus       206 ~~~i~~vDtPGi~~~a~~~~~Lg~~--~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN  283 (390)
T PRK12298        206 ERSFVVADIPGLIEGASEGAGLGIR--FLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFN  283 (390)
T ss_pred             CcEEEEEeCCCccccccchhhHHHH--HHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence            2359999999986421   111111  1122234578899999751      122222222   22221  134558999


Q ss_pred             cCCCCCc
Q 015657          163 KLDGDSR  169 (403)
Q Consensus       163 k~D~~~~  169 (403)
                      |+|....
T Consensus       284 KiDl~~~  290 (390)
T PRK12298        284 KIDLLDE  290 (390)
T ss_pred             CCccCCh
Confidence            9997543

>PRK06526 transposase; Provisional

Probab=97.94  E-value=3.9e-05  Score=73.48  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=53.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      +..++++|++|+|||+++.+|+..+.++|++|.++.+.    ...+++... .       ..+       .....+..+ 
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~----~l~~~l~~~-~-------~~~-------~~~~~l~~l-  157 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA----QWVARLAAA-H-------HAG-------RLQAELVKL-  157 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH----HHHHHHHHH-H-------hcC-------cHHHHHHHh-
Confidence            34589999999999999999999999999999765432    222333211 0       000       112223444 


Q ss_pred             hCCCcEEEEeCCCCccccHHhH
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMM  116 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~  116 (403)
                       ..+|++|||-.|....+....
T Consensus       158 -~~~dlLIIDD~g~~~~~~~~~  178 (254)
T PRK06526        158 -GRYPLLIVDEVGYIPFEPEAA  178 (254)
T ss_pred             -ccCCEEEEcccccCCCCHHHH
Confidence             579999999999876544433

>cd04165 GTPBP1_like GTPBP1-like

Probab=97.93  E-value=4.9e-05  Score=71.42  Aligned_cols=141  Identities=19%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH----HHH--Hhh-hccCCceEeCCCCCCHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID----QLV--ILG-EQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~----~l~--~~~-~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      ++++|..|+||||++..|.......|.-......|.++.....    .+.  .++ ...+.. ....... ..   ....
T Consensus         2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~-~~~~~~~-~~---~~~~   76 (224)
T cd04165           2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV-VNYPDNH-LS---ESDI   76 (224)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCce-ecCCCCc-cc---cccc
Confidence            5778999999999999998644444444444444422111100    000  000 000100 0000000 00   0001


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                      +.+...++.+.+|||||....    ..+...-.....+|.+++|+|+..+  ......+... ....+ .-+|+||+|..
T Consensus        77 ~~~~~~~~~i~liDtpG~~~~----~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~  151 (224)
T cd04165          77 EICEKSSKLVTFIDLAGHERY----LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLA  151 (224)
T ss_pred             eeeeeCCcEEEEEECCCcHHH----HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECcccc
Confidence            112235778999999996432    2221111111246888999998433  2222222222 23344 45899999974


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       152 ~  152 (224)
T cd04165         152 P  152 (224)
T ss_pred             C
Confidence            3

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.92  E-value=5.7e-05  Score=78.09  Aligned_cols=86  Identities=26%  Similarity=0.504  Sum_probs=57.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+++++|.+|+||||++..++..++++|.+|+++++.-    ..+++.......+.+   ++.. ...+    +.+.++
T Consensus        80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee----s~~qi~~ra~rlg~~~~~l~~~-~e~~----l~~i~~  150 (446)
T PRK11823         80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE----SASQIKLRAERLGLPSDNLYLL-AETN----LEAILA  150 (446)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc----cHHHHHHHHHHcCCChhcEEEe-CCCC----HHHHHH
Confidence            578999999999999999999999998899999999863    233443333333331   1111 1111    223333


Q ss_pred             HHHhCCCcEEEEeCCCCc
Q 015657           92 EAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l  109 (403)
                      .++..++++||||....+
T Consensus       151 ~i~~~~~~lVVIDSIq~l  168 (446)
T PRK11823        151 TIEEEKPDLVVIDSIQTM  168 (446)
T ss_pred             HHHhhCCCEEEEechhhh
Confidence            444457999999986544

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.92  E-value=0.0044  Score=62.68  Aligned_cols=95  Identities=21%  Similarity=0.226  Sum_probs=54.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEEeccCCChhhHHHHHHhhhccCC-ceEeCCCCCCHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAGDVYRPAAIDQLVILGEQVGV-PVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G--~kVllVd~D~~rp~~~~~l~~~~~~~gv-~v~~~~~~~~~~~~~~~~   89 (403)
                      ..+..++|+|++|+||||++..++..+...+  ..+..|+|....... .-+..+...... +. + .......+.....
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~-~~~~~i~~~l~~~~~-~-~~~~~~~~~~~~~  129 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY-AIFSEIARQLFGHPP-P-SSGLSFDELFDKI  129 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH-HHHHHHHHHhcCCCC-C-CCCCCHHHHHHHH
Confidence            4556688999999999999999999998764  677777776543211 111111111111 10 0 1112234444444


Q ss_pred             HHHHHh-CCCcEEEEeCCCCcc
Q 015657           90 LEEAKK-KNVDVVIVDTAGRLQ  110 (403)
Q Consensus        90 l~~~~~-~~~D~VIIDtpg~l~  110 (403)
                      .+.+.. ..+-+|+||=.-.+.
T Consensus       130 ~~~l~~~~~~~viviDE~d~l~  151 (394)
T PRK00411        130 AEYLDERDRVLIVALDDINYLF  151 (394)
T ss_pred             HHHHHhcCCEEEEEECCHhHhh
Confidence            444432 345688999876653

>PRK05433 GTP-binding protein LepA; Provisional

Probab=97.92  E-value=8.1e-05  Score=79.69  Aligned_cols=145  Identities=16%  Similarity=0.210  Sum_probs=74.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      ...|.++++|..++||||++..|.....   +++..-.+.|..           ......|+.+........        
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~-----------~~ErerGiTi~~~~v~~~--------   65 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSM-----------DLERERGITIKAQAVRLN--------   65 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCc-----------hHHhhcCCcccccEEEEE--------
Confidence            3567899999999999999999886432   111111111111           111222332221100000        


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      +.....++|.+.|+||||...+.....    ....  .++.+++|+|+..+   ++...........++ .-+|+||+|.
T Consensus        66 ~~~~dg~~~~lnLiDTPGh~dF~~~v~----~sl~--~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl  138 (600)
T PRK05433         66 YKAKDGETYILNLIDTPGHVDFSYEVS----RSLA--ACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL  138 (600)
T ss_pred             EEccCCCcEEEEEEECCCcHHHHHHHH----HHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence            000001468899999999865432222    2212  34889999999654   322222222233444 4489999997


Q ss_pred             CCc-h-hHHHHHHHHhCCC
Q 015657          167 DSR-G-GAALSVKEVSGKP  183 (403)
Q Consensus       167 ~~~-~-~~~~~~~~~~g~p  183 (403)
                      ... . .....+.+.++.+
T Consensus       139 ~~a~~~~v~~ei~~~lg~~  157 (600)
T PRK05433        139 PAADPERVKQEIEDVIGID  157 (600)
T ss_pred             CcccHHHHHHHHHHHhCCC
Confidence            432 2 2223444555554

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.92  E-value=0.0001  Score=66.85  Aligned_cols=41  Identities=27%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHh----------CCCcEEEEeccCCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKK----------QGKSCMLVAGDVYR   55 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~----------~G~kVllVd~D~~r   55 (403)
                      ..+.+++|++|+||||++..++..++.          ++.+|++++++...
T Consensus        32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~   82 (193)
T PF13481_consen   32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE   82 (193)
T ss_dssp             TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence            357899999999999999999999986          57899999999653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.91  E-value=3.2e-05  Score=79.92  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      ++...++++|+.++||||++..|.+.+.
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g   32 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLG   32 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhC
Confidence            3445689999999999999999987664

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=5.8e-05  Score=78.42  Aligned_cols=229  Identities=16%  Similarity=0.168  Sum_probs=127.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+.|-|.++.+=-+||||++....+|-..-   --+-+.+..  .+.-+...+....|+.+..+....            
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~---~~i~ev~~~--~a~md~m~~er~rgITiqSAAt~~------------   99 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRI---KHIGEVRGG--GATMDSMELERQRGITIQSAATYF------------   99 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeeccee---eeccccccC--ceeeehHHHHHhcCceeeeceeee------------
Confidence            356888999999999999999888766431   111111111  121122234556677665543322            


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCe-eEEEEccCCC--CC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDG--DS  168 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlNk~D~--~~  168 (403)
                       .|.+|.+.||||||...+.-+....|..+      |..++|+++..| +.....++....+.++ .-.++||+|.  ..
T Consensus       100 -~w~~~~iNiIDTPGHvDFT~EVeRALrVl------DGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  100 -TWRDYRINIIDTPGHVDFTFEVERALRVL------DGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGAS  172 (721)
T ss_pred             -eeccceeEEecCCCceeEEEEehhhhhhc------cCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCC
Confidence             25689999999999987755444444333      788999999655 3333344433333333 4478899994  34


Q ss_pred             chhHHHHHHHHhCC-------CeE----EeeccCCcCCCC-CCC------------chhhhhhhcCCccHHHHHHHHHHH
Q 015657          169 RGGAALSVKEVSGK-------PIK----LVGRGERMEDLE-PFY------------PDRMAGRILGMGDVLSFVEKAQEV  224 (403)
Q Consensus       169 ~~~~~~~~~~~~g~-------pi~----fig~ge~v~~l~-~f~------------~~~~~~r~lG~~dv~~l~e~~~e~  224 (403)
                      ....+..+...++.       |+.    |-|...-+.... -|+            |+++.++      ..+.++.+-|.
T Consensus       173 ~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~------~~e~R~~LIE~  246 (721)
T KOG0465|consen  173 PFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEEL------AEEKRQALIET  246 (721)
T ss_pred             hHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHH------HHHHHHHHHHH
Confidence            44555555554443       221    111111111000 011            2222111      12333334444


Q ss_pred             hhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC------------------hhHHHhcCCCCC
Q 015657          225 MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS------------------MSRVIGMIPGMG  271 (403)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~------------------~~~~~~~~pg~~  271 (403)
                      +.+.|.+.....+++.+++.+++...++...-.+.                  ++.+++.+|..+
T Consensus       247 lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~  311 (721)
T KOG0465|consen  247 LADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPS  311 (721)
T ss_pred             HhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChh
Confidence            44445555566667778999999999988765443                  466778888654

>PRK08233 hypothetical protein; Provisional

Probab=97.91  E-value=3.7e-05  Score=68.91  Aligned_cols=37  Identities=27%  Similarity=0.463  Sum_probs=29.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+|+|.+||||||+|..|+..|.  +..+...|.+
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~   38 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRY   38 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCE
Confidence            458899999999999999999998874  2355556555

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.91  E-value=0.00018  Score=73.75  Aligned_cols=117  Identities=21%  Similarity=0.356  Sum_probs=62.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |+++|.+||||||+...|.      |.+..+++..   |....+         . .+.                .+.+.+
T Consensus         2 i~ivG~~nvGKStL~n~l~------~~~~~~v~~~---~g~t~d---------~-~~~----------------~~~~~~   46 (429)
T TIGR03594         2 VAIVGRPNVGKSTLFNRLT------GKRDAIVSDT---PGVTRD---------R-KYG----------------DAEWGG   46 (429)
T ss_pred             EEEECCCCCCHHHHHHHHh------CCCcceecCC---CCcccC---------c-eEE----------------EEEECC
Confidence            7899999999999998876      4444333321   111000         0 000                001245


Q ss_pred             CcEEEEeCCCCccccHHhHHHHHH-H-hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKD-V-KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~-i-~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.|+||||.......+...+.. . ...-.++.+++|+|+..+  ......+..+...-...-+|+||+|....
T Consensus        47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~  122 (429)
T TIGR03594        47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE  122 (429)
T ss_pred             eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc
Confidence            679999999974332222221111 1 112245889999999543  22222233232222334589999997543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.91  E-value=2.7e-05  Score=80.51  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=22.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      +...++++|..++||||++..|...+.
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g   32 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCG   32 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcC
Confidence            334588999999999999999987654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.90  E-value=0.00014  Score=74.04  Aligned_cols=128  Identities=21%  Similarity=0.223  Sum_probs=67.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE--eccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV--d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      ++...|+++|..++||||++..|...+...|..-...  ..|        .. ......|+.+-....            
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d--------~~-~~E~~rG~Ti~~~~~------------   68 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQID--------NA-PEEKARGITINTAHV------------   68 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhccccccccccc--------CC-HHHHhcCcceeeEEE------------
Confidence            3446689999999999999999987666544321100  111        10 011122332211100            


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                       .+..+++.+.||||||...+    ...+  +.....+|.+++|+|+..+  ......+.... ..++..-+++||+|..
T Consensus        69 -~~~~~~~~~~liDtpGh~~f----~~~~--~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~  141 (394)
T TIGR00485        69 -EYETENRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV  141 (394)
T ss_pred             -EEcCCCEEEEEEECCchHHH----HHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence             00124678999999996432    2222  2222345889999999653  22222222222 2233333578999965


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       142 ~  142 (394)
T TIGR00485       142 D  142 (394)
T ss_pred             C
Confidence            3

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=97.89  E-value=0.00024  Score=68.73  Aligned_cols=95  Identities=21%  Similarity=0.273  Sum_probs=66.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..+|+=|.|+.||||||+|..++....+.|.+|.+||+.- ++|....++.... ..++.+..........+++......
T Consensus        59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l~v~~~~~~e~q~~i~~~~~~~  137 (279)
T COG0468          59 RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNLLVSQPDTGEQQLEIAEKLARS  137 (279)
T ss_pred             cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-hcceeEecCCCHHHHHHHHHHHHHh
Confidence            3488899999999999999999999999998999999875 7787777664321 2334444333333333344444433


Q ss_pred             HHhCCCcEEEEeCCCCcc
Q 015657           93 AKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~  110 (403)
                      .. +.+++||||+...+.
T Consensus       138 ~~-~~i~LvVVDSvaa~~  154 (279)
T COG0468         138 GA-EKIDLLVVDSVAALV  154 (279)
T ss_pred             cc-CCCCEEEEecCcccc
Confidence            32 369999999977653

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.87  E-value=7.4e-05  Score=63.14  Aligned_cols=105  Identities=19%  Similarity=0.364  Sum_probs=61.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-----CCcEEEEeccCCC-hhhHHHHHHhhhccCCceEeCCCCCCHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVYR-PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK   87 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-----G~kVllVd~D~~r-p~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~   87 (403)
                      ..++++++|++|+||||++..++..+...     ..+|+.+.+.... +..+  ...+....+.+...   .....+...
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~---~~~~~~l~~   77 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDF--AQEILEALGLPLKS---RQTSDELRS   77 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHH--HHHHHHHHT-SSSS---TS-HHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHH--HHHHHHHhCccccc---cCCHHHHHH
Confidence            45788999999999999999999988764     5677777776554 2221  22233333333222   234555555


Q ss_pred             HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhh
Q 015657           88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR  124 (403)
Q Consensus        88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~  124 (403)
                      ...+.+......++|||-.-.+. +...+..+..+..
T Consensus        78 ~~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~  113 (131)
T PF13401_consen   78 LLIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLN  113 (131)
T ss_dssp             HHHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHh
Confidence            55566654445689999887763 3555555544444

>PRK04328 hypothetical protein; Provisional

Probab=97.87  E-value=0.00028  Score=67.31  Aligned_cols=41  Identities=27%  Similarity=0.295  Sum_probs=36.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +..+++++|.+|+|||+++..++....++|.++++|+.+-.
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~   62 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH   62 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence            46889999999999999999999888788999999998753

>cd01878 HflX HflX subfamily

Probab=97.86  E-value=0.00033  Score=64.15  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=38.6

Q ss_pred             CCcEEEEeCCCCccc-cHHhHHHHHH-HhhhcCCceEEEEEecccHH---HHH---HHHHHhhhcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQ---EAA---ALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~-d~~l~~el~~-i~~~~~~~~vllVvda~~g~---~~~---~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      .+.++|+||||.... .......... +......+.+++|+|+....   ...   .....+...-...-+|+||+|...
T Consensus        88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~  167 (204)
T cd01878          88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD  167 (204)
T ss_pred             CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence            358999999997432 1111111111 11233568899999985332   111   222222211123458999999754


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       168 ~  168 (204)
T cd01878         168 D  168 (204)
T ss_pred             h
Confidence            3

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=97.85  E-value=0.00036  Score=68.64  Aligned_cols=44  Identities=34%  Similarity=0.489  Sum_probs=39.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      ..+|+ ++++|+.-+||||++.-|..|..+.|++++.++.|+..+
T Consensus       101 ~~GPr-v~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~  144 (415)
T KOG2749|consen  101 SYGPR-VMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG  144 (415)
T ss_pred             ccCCE-EEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence            34566 678899999999999999999999999999999999774

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.85  E-value=0.00025  Score=72.94  Aligned_cols=117  Identities=22%  Similarity=0.336  Sum_probs=62.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.+||||||+...|.      |.+..+++..   |+..           ......               .....
T Consensus         3 ~I~ivG~~~vGKStL~n~l~------~~~~~~v~~~---~~~t-----------~d~~~~---------------~~~~~   47 (435)
T PRK00093          3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVADT---PGVT-----------RDRIYG---------------EAEWL   47 (435)
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCCceeeCCC---CCCc-----------ccceEE---------------EEEEC
Confidence            47888999999999998886      5454433311   1110           000000               00124


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ++++.|+||||....+......+...  .....+|.+++|+|+..+  ......+..+...-...-+|+||+|...
T Consensus        48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~  123 (435)
T PRK00093         48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD  123 (435)
T ss_pred             CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence            57899999999865222122222111  112346889999999543  1111222222222233458999999654

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.84  E-value=6.1e-05  Score=70.43  Aligned_cols=41  Identities=27%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~   54 (403)
                      +..+++++|.+|+|||+++..++...+++ |.+|++|..+.-
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~   59 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP   59 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence            45889999999999999999999988888 999999998743

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.84  E-value=0.0001  Score=75.39  Aligned_cols=66  Identities=21%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---H--HHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~--~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ++++.+.||||||...+...+..      .+..+|.+++|+|+..+   +  +....+..+.  .+..-+++||+|...
T Consensus        77 ~~~~~~~liDtPGh~~f~~~~~~------~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~--~~~iivviNK~D~~~  147 (406)
T TIGR02034        77 TDKRKFIVADTPGHEQYTRNMAT------GASTADLAVLLVDARKGVLEQTRRHSYIASLLG--IRHVVLAVNKMDLVD  147 (406)
T ss_pred             cCCeEEEEEeCCCHHHHHHHHHH------HHhhCCEEEEEEECCCCCccccHHHHHHHHHcC--CCcEEEEEEeccccc
Confidence            35778999999995433222222      22245889999999544   1  2222222222  332347899999753

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00416 elongation factor 2; Provisional

Probab=97.83  E-value=2.7e-05  Score=86.41  Aligned_cols=137  Identities=14%  Similarity=0.145  Sum_probs=67.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE--EEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC--MLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV--llVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      .+.+.|+++|+.++||||++..|......-..+.  .....|.. +        .....|+.+........ ...  ..-
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~-~--------~E~~rgiti~~~~~~~~-~~~--~~~   84 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTR-A--------DEQERGITIKSTGISLY-YEH--DLE   84 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccc-h--------hhHhhcceeeccceEEE-eec--ccc
Confidence            4568899999999999999999986443110000  00011210 0        11112222211100000 000  000


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      ..-...++.+.+|||||...+-    .++...  ....|.+++|+|+..+  ......++.....-...-+++||+|..
T Consensus        85 ~~~~~~~~~i~liDtPG~~~f~----~~~~~a--l~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         85 DGDDKQPFLINLIDSPGHVDFS----SEVTAA--LRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             cccCCCceEEEEEcCCCHHhHH----HHHHHH--HhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence            0000135779999999987532    222221  2234889999999544  122233332222212345899999976

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.83  E-value=0.00093  Score=68.72  Aligned_cols=119  Identities=19%  Similarity=0.226  Sum_probs=63.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+..|+++|.+|+||||+...|.      |....++.-.   +..        .   .+.+...               +
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll------~~~~~~~~~~---~gt--------t---~~~~~~~---------------~  216 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALL------GEERVIVSDI---AGT--------T---RDSIDTP---------------F  216 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh------CCCceeecCC---CCc--------e---EEEEEEE---------------E
Confidence            45668999999999999998876      3333222211   100        0   0000000               0


Q ss_pred             HhCCCcEEEEeCCCCccc---c--HHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           94 KKKNVDVVIVDTAGRLQI---D--KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~---d--~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      ...+.++.++||||....   +  .+.......+...-.+|.+++|+|+..+  ......+..........-+++||+|.
T Consensus       217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl  296 (435)
T PRK00093        217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL  296 (435)
T ss_pred             EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence            014567999999996421   1  1111111222223345889999999543  22223333222222344589999997


Q ss_pred             C
Q 015657          167 D  167 (403)
Q Consensus       167 ~  167 (403)
                      .
T Consensus       297 ~  297 (435)
T PRK00093        297 V  297 (435)
T ss_pred             C
Confidence            5

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.83  E-value=5.6e-05  Score=78.77  Aligned_cols=27  Identities=22%  Similarity=0.195  Sum_probs=22.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++.-.|+++|..++||||++..|....
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~   51 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDT   51 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhc
Confidence            455668889999999999999998664

>PLN03126 Elongation factor Tu; Provisional

Probab=97.83  E-value=0.00021  Score=74.45  Aligned_cols=128  Identities=21%  Similarity=0.194  Sum_probs=66.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE--EEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM--LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl--lVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      ++...++++|..++||||++..|...+..-+.+..  ....|        ... .....|+.+......           
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D--------~~~-~Er~rGiTi~~~~~~-----------  138 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEID--------AAP-EERARGITINTATVE-----------  138 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhcccccccccccc--------CCh-hHHhCCeeEEEEEEE-----------
Confidence            34466889999999999999999866543211110  00111        110 111123322111000           


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                        +..+++.+.||||||...+    ..++  +..+..+|.+++|+|+..+  ....+.+... ...++..-+++||+|..
T Consensus       139 --~~~~~~~i~liDtPGh~~f----~~~~--~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~  210 (478)
T PLN03126        139 --YETENRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV  210 (478)
T ss_pred             --EecCCcEEEEEECCCHHHH----HHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence              0124678999999996532    2222  1122245889999998544  1222222211 12233234689999975


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       211 ~  211 (478)
T PLN03126        211 D  211 (478)
T ss_pred             C
Confidence            4

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.83  E-value=8.3e-05  Score=64.75  Aligned_cols=77  Identities=22%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             EEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH--HHHHHHhhhcCCeeEEEEccCCCCCc---hhHHHH
Q 015657          101 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGDSR---GGAALS  175 (403)
Q Consensus       101 VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~--~~~~~~~~~~~~i~GvIlNk~D~~~~---~~~~~~  175 (403)
                      .+|||||-.-....+...|...  ..+++-+++|.|+......  -..+..|+  .++. =|+||+|....   ...+..
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~t--a~dad~V~ll~dat~~~~~~pP~fa~~f~--~pvI-GVITK~Dl~~~~~~i~~a~~  113 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVT--AQDADVVLLLQDATEPRSVFPPGFASMFN--KPVI-GVITKIDLPSDDANIERAKK  113 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHH--HhhCCEEEEEecCCCCCccCCchhhcccC--CCEE-EEEECccCccchhhHHHHHH
Confidence            4599999876555555554333  3356889999999654322  12233343  2333 46799997733   333444


Q ss_pred             HHHHhCC
Q 015657          176 VKEVSGK  182 (403)
Q Consensus       176 ~~~~~g~  182 (403)
                      ..+..|+
T Consensus       114 ~L~~aG~  120 (143)
T PF10662_consen  114 WLKNAGV  120 (143)
T ss_pred             HHHHcCC
Confidence            5555554

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01889 SelB_euk SelB subfamily

Probab=97.83  E-value=0.00021  Score=64.91  Aligned_cols=65  Identities=23%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                      .++.+.|+||||...    +.....  ...-.++.+++|+|+..+.  ......... ....+ .-+|+||+|..
T Consensus        66 ~~~~~~i~DtpG~~~----~~~~~~--~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~  133 (192)
T cd01889          66 ENLQITLVDCPGHAS----LIRTII--GGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLI  133 (192)
T ss_pred             cCceEEEEECCCcHH----HHHHHH--HHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccC
Confidence            478999999999742    222221  1122357899999996431  111111111 11222 34899999965

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.83  E-value=4.8e-05  Score=67.65  Aligned_cols=40  Identities=28%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +.|+.|+|..+|||||++..|...|..+|++|.+|.-+..
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh   41 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH   41 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence            6799999999999999999999999999999999975533

>cd00880 Era_like Era (E

Probab=97.83  E-value=5.8e-05  Score=64.33  Aligned_cols=72  Identities=19%  Similarity=0.105  Sum_probs=39.6

Q ss_pred             CCcEEEEeCCCCccccHHhH---HHHHHHhhhcCCceEEEEEecccHHHHHHH--HHHhhhcCCeeEEEEccCCCCCch
Q 015657           97 NVDVVIVDTAGRLQIDKAMM---DELKDVKRVLNPTEVLLVVDAMTGQEAAAL--VTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~---~el~~i~~~~~~~~vllVvda~~g~~~~~~--~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .++++++||||.........   ......  ...++.+++|+|+.........  ...........-+++||+|.....
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~--~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~  120 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRV--LERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE  120 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHH--HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh
Confidence            67999999999764321111   111111  2245888999999543221111  222222223345999999976543

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK06762 hypothetical protein; Provisional

Probab=97.82  E-value=9.3e-05  Score=65.69  Aligned_cols=37  Identities=41%  Similarity=0.688  Sum_probs=31.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      |++|+++|++||||||+|..|+..+   |..+.+++.|..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~   38 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVV   38 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHH
Confidence            6899999999999999999999887   446778887743

>TIGR00416 sms DNA repair protein RadA

Probab=97.82  E-value=0.0001  Score=76.40  Aligned_cols=87  Identities=24%  Similarity=0.420  Sum_probs=57.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l   90 (403)
                      +..++++.|.+|+||||++..++..+++.|.+|++++.+-.    .+|+.......++.   ++... .... +   ...
T Consensus        93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~~l~~~~-e~~~-~---~I~  163 (454)
T TIGR00416        93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEPNLYVLS-ETNW-E---QIC  163 (454)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChHHeEEcC-CCCH-H---HHH
Confidence            35788999999999999999999999988899999998732    33443333344432   11111 1122 2   223


Q ss_pred             HHHHhCCCcEEEEeCCCCc
Q 015657           91 EEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l  109 (403)
                      ..+...++++||||.-..+
T Consensus       164 ~~i~~~~~~~vVIDSIq~l  182 (454)
T TIGR00416       164 ANIEEENPQACVIDSIQTL  182 (454)
T ss_pred             HHHHhcCCcEEEEecchhh
Confidence            3344468999999975543

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK06696 uridine kinase; Validated

Probab=97.82  E-value=3e-05  Score=72.64  Aligned_cols=45  Identities=29%  Similarity=0.503  Sum_probs=40.0

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ...+|.+|+|+|.+||||||+|..|+..|...|.+|.++..|-|.
T Consensus        18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            355789999999999999999999999999889999888888664

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.81  E-value=0.00032  Score=60.41  Aligned_cols=116  Identities=21%  Similarity=0.267  Sum_probs=60.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|++.|.+|+||||+...|.      +.+...+...   +...           ..+....               ....
T Consensus         3 ~i~l~G~~~~GKstli~~l~------~~~~~~~~~~---~~~~-----------~~~~~~~---------------~~~~   47 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALA------GRDRAIVSDI---AGTT-----------RDVIEES---------------IDIG   47 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHH------CCceEeccCC---CCCc-----------cceEEEE---------------EEeC
Confidence            47899999999999998776      3333222211   1110           0000000               0014


Q ss_pred             CCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      +++++++||||........... . ........++.+++|+|+...  .........  ......-+|+||+|....
T Consensus        48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~  122 (157)
T cd04164          48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD  122 (157)
T ss_pred             CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence            5689999999975432211100 0 111222346888999999632  222222222  122334589999997543

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.81  E-value=9.1e-05  Score=65.10  Aligned_cols=66  Identities=11%  Similarity=0.068  Sum_probs=37.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh-----hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN-----IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~-----~~~~i~GvIlNk~D~~  167 (403)
                      .++.+.++||||......    .....  ...++.+++|+|+........   ....+.     ... ..-+|+||+|..
T Consensus        48 ~~~~~~l~Dt~G~~~~~~----~~~~~--~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D~~  120 (167)
T cd04160          48 GNARLKFWDLGGQESLRS----LWDKY--YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGV-PLLILANKQDLP  120 (167)
T ss_pred             CCEEEEEEECCCChhhHH----HHHHH--hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCC-CEEEEEEccccc
Confidence            467899999999643211    11111  224588899999865432222   222111     122 345899999964


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       121 ~  121 (167)
T cd04160         121 D  121 (167)
T ss_pred             c
Confidence            4

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01882 BMS1 Bms1

Probab=97.81  E-value=0.0004  Score=65.19  Aligned_cols=107  Identities=28%  Similarity=0.390  Sum_probs=60.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccC-CceEeCCCCCCHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG-VPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~g-v~v~~~~~~~~~~~~~~~~l   90 (403)
                      ..+|.+|+++|.+|+||||++..|...+...  .+   .                ...| +.+..               
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--~~---~----------------~~~g~i~i~~---------------   79 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--NI---S----------------DIKGPITVVT---------------   79 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--cc---c----------------cccccEEEEe---------------
Confidence            3578999999999999999998887443211  00   0                0011 11111               


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhh-cCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI-EIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~-~~~i~GvIlNk~D~~  167 (403)
                          ..+..++++|||+.+   ..+    .+..  -..+-+++|+|+..+  .........+.. ..+..-+|+||+|.-
T Consensus        80 ----~~~~~i~~vDtPg~~---~~~----l~~a--k~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~  146 (225)
T cd01882          80 ----GKKRRLTFIECPNDI---NAM----IDIA--KVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF  146 (225)
T ss_pred             ----cCCceEEEEeCCchH---HHH----HHHH--HhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence                135678999999854   111    1222  224888999998543  222222222222 233233599999974

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.80  E-value=0.00014  Score=67.03  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=36.8

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTF-NIEIGITGAILTKLDGDS  168 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~-~~~~~i~GvIlNk~D~~~  168 (403)
                      +.+.|+||||...    +..+.  +......+.+++|+|+..+   ......+..+ .......-+|+||+|...
T Consensus        83 ~~i~~iDtPG~~~----~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~  151 (203)
T cd01888          83 RHVSFVDCPGHEI----LMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK  151 (203)
T ss_pred             cEEEEEECCChHH----HHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence            6799999999532    22222  1222245889999999542   2222222222 122333447999999754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=97.80  E-value=3.4e-05  Score=78.41  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|+.|+|..||||||++.+|...|..+|++|.+|.-|
T Consensus         2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~   38 (452)
T PRK14495          2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS   38 (452)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            5899999999999999999999999999999997644

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.80  E-value=0.00022  Score=73.35  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++...|+++|+.++||||++..|....
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~   30 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYET   30 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHc
Confidence            444558999999999999999998554

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.80  E-value=0.00048  Score=61.88  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=19.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .....|+++|.+|+||||+...|.
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~   39 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALT   39 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHh
Confidence            344567899999999999998776

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01898 Obg Obg subfamily

Probab=97.80  E-value=0.00029  Score=61.93  Aligned_cols=70  Identities=14%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             CcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEEEecccH----HHHHHHHHHhhh-----cCCeeEEEEccCC
Q 015657           98 VDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG----QEAAALVTTFNI-----EIGITGAILTKLD  165 (403)
Q Consensus        98 ~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllVvda~~g----~~~~~~~~~~~~-----~~~i~GvIlNk~D  165 (403)
                      ..+.|+||||....   ...+....  +...-..+.+++|+|+...    +........+..     .-...-+|+||+|
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  125 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID  125 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHH--HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence            38899999996421   11122211  1112235889999999644    232222222221     1123458999999


Q ss_pred             CCCc
Q 015657          166 GDSR  169 (403)
Q Consensus       166 ~~~~  169 (403)
                      ....
T Consensus       126 l~~~  129 (170)
T cd01898         126 LLDE  129 (170)
T ss_pred             cCCc
Confidence            6443

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK07667 uridine kinase; Provisional

Probab=97.79  E-value=4.4e-05  Score=69.98  Aligned_cols=42  Identities=29%  Similarity=0.395  Sum_probs=38.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ..+.+|+|+|.+||||||+|..|+..|...|.+|.+++.|-+
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            345899999999999999999999999999999999999964

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.79  E-value=0.00034  Score=74.93  Aligned_cols=147  Identities=18%  Similarity=0.272  Sum_probs=73.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ..|.++++|..++||||++..|......-..+      + +.....+.+ ......|+.+........        +...
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~------~-~~~~~~D~~-~~ErerGiTi~~~~v~~~--------~~~~   65 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER------E-MREQVLDSM-DLERERGITIKAQAVRLN--------YKAK   65 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc------c-ccccccCCC-hHHHhcCCCeeeeEEEEE--------EEcC
Confidence            35789999999999999999888643210000      0 011111111 011223333221100000        0000


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      ....|.+.|+||||...+....    ...  ...++.+++|+|+..+   ++...........++ .-+|+||+|.... 
T Consensus        66 ~g~~~~l~liDTPG~~dF~~~v----~~~--l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~  138 (595)
T TIGR01393        66 DGETYVLNLIDTPGHVDFSYEV----SRS--LAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD  138 (595)
T ss_pred             CCCEEEEEEEECCCcHHHHHHH----HHH--HHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC
Confidence            0134789999999986542222    222  1235889999999654   332222222233343 4489999997432 


Q ss_pred             -hhHHHHHHHHhCCC
Q 015657          170 -GGAALSVKEVSGKP  183 (403)
Q Consensus       170 -~~~~~~~~~~~g~p  183 (403)
                       ......+.+.++.+
T Consensus       139 ~~~~~~el~~~lg~~  153 (595)
T TIGR01393       139 PERVKKEIEEVIGLD  153 (595)
T ss_pred             HHHHHHHHHHHhCCC
Confidence             22234455555543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK08727 hypothetical protein; Validated

Probab=97.79  E-value=0.0014  Score=61.86  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=33.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..++++|++|+|||+++..++..+.++|++|.++.++
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~   78 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ   78 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence            4589999999999999999999999999999988753

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.77  E-value=0.00022  Score=66.61  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=36.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +..++++.|.+|+|||+++..++....++|.+|++++.+-
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~   54 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE   54 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3578999999999999999999998888899999999874

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.76  E-value=0.00027  Score=67.52  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ..+-.|+++|.+|+||||+...|.
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLl   52 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIF   52 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHh
Confidence            345678899999999999998877

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.76  E-value=5.8e-05  Score=76.11  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=37.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .+++|.|+|.+||||||++.+|...|.++|++|.+|.-|.+
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h  244 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH  244 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence            46799999999999999999999999999999999986644

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.76  E-value=0.00011  Score=70.88  Aligned_cols=124  Identities=21%  Similarity=0.313  Sum_probs=74.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      .--+++.|.|.+||||++..+.      |.||..+..-++...        ..  ...+++.                  
T Consensus        72 ~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~K~~TTr--------~~--ilgi~ts------------------  117 (379)
T KOG1423|consen   72 SLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSRKVHTTR--------HR--ILGIITS------------------  117 (379)
T ss_pred             EEEEEEEcCCCcchhhhhhHhh------CCcccccccccccee--------ee--eeEEEec------------------
Confidence            3457888999999999999998      999987665432211        11  1223332                  


Q ss_pred             hCCCcEEEEeCCCCcccc-----HHhHHHHHHHhh-hcCCceEEEEEeccc-H----HHHHHHHHHhhhcCCe-eEEEEc
Q 015657           95 KKNVDVVIVDTAGRLQID-----KAMMDELKDVKR-VLNPTEVLLVVDAMT-G----QEAAALVTTFNIEIGI-TGAILT  162 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d-----~~l~~el~~i~~-~~~~~~vllVvda~~-g----~~~~~~~~~~~~~~~i-~GvIlN  162 (403)
                       ..+.+|++||||.+...     ...+.-+.+... +-.+|-+++|+|+.. .    .........+.   .+ .-+|+|
T Consensus       118 -~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys---~ips~lvmn  193 (379)
T KOG1423|consen  118 -GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS---KIPSILVMN  193 (379)
T ss_pred             -CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh---cCCceeecc
Confidence             57899999999988641     112222222222 234688899999852 1    22333333332   23 237899


Q ss_pred             cCCCCCchhHHHHH
Q 015657          163 KLDGDSRGGAALSV  176 (403)
Q Consensus       163 k~D~~~~~~~~~~~  176 (403)
                      |+|.-.....++..
T Consensus       194 kid~~k~k~~Ll~l  207 (379)
T KOG1423|consen  194 KIDKLKQKRLLLNL  207 (379)
T ss_pred             chhcchhhhHHhhh
Confidence            99966544444443

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.76  E-value=0.00025  Score=64.23  Aligned_cols=44  Identities=36%  Similarity=0.579  Sum_probs=38.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ..++.+++++|.+|+||||++..|+..+...|..+.+++.|..+
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r   58 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR   58 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence            35678999999999999999999999998888888899988544

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.76  E-value=0.00038  Score=70.57  Aligned_cols=153  Identities=22%  Similarity=0.252  Sum_probs=92.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..|-|+|..+---||||+.-+|...-..  .+..|.=--.|      ..   .+.+..|+.++.-.+..           
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMD------Sn---DlEkERGITILaKnTav-----------   63 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMD------SN---DLEKERGITILAKNTAV-----------   63 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcC------cc---chhhhcCcEEEecccee-----------
Confidence            3567888889899999999888753221  11112100001      01   23456678877654432           


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC-
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD-  167 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~-  167 (403)
                        .++++.+.||||||.-.+..+.    ..+...+  |.++|+|||..|   |.-.-.-+.+...+++. ||+||+|.. 
T Consensus        64 --~~~~~~INIvDTPGHADFGGEV----ERvl~MV--DgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp~  134 (603)
T COG1217          64 --NYNGTRINIVDTPGHADFGGEV----ERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRPD  134 (603)
T ss_pred             --ecCCeEEEEecCCCcCCccchh----hhhhhhc--ceEEEEEEcccCCCCchhhhHHHHHHcCCCcE-EEEeCCCCCC
Confidence              2578999999999987664433    3333333  899999999544   55555556677666654 899999965 


Q ss_pred             Cc-hhHHHHH----------HHHhCCCeEEeeccCCcCC
Q 015657          168 SR-GGAALSV----------KEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       168 ~~-~~~~~~~----------~~~~g~pi~fig~ge~v~~  195 (403)
                      ++ .+.+..+          -+.+..|+.|.........
T Consensus       135 Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~  173 (603)
T COG1217         135 ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS  173 (603)
T ss_pred             CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence            23 2332222          2235668877665444433

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.75  E-value=0.00043  Score=64.78  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=35.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +..++++.|.+|+||||++.+++....++|.+|++++++.
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~   58 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE   58 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            4588999999999999999999987778899999999864

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.74  E-value=0.0008  Score=63.24  Aligned_cols=44  Identities=30%  Similarity=0.461  Sum_probs=37.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE-EeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll-Vd~D~~r   55 (403)
                      ..++.+++++|++||||||++..|+..+...+..+.+ +..|.+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~   74 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH   74 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence            4678999999999999999999999999987766666 7777654

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=97.73  E-value=9.6e-05  Score=72.84  Aligned_cols=136  Identities=18%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+++-+.|+.++||||++..+.+.+.+.|..+++||+.- ..|..   +..++-...- ++...+  +..+.+-.+++.+
T Consensus        53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~---a~~lGvdl~r-llv~~P--~~~E~al~~~e~l  126 (322)
T PF00154_consen   53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEY---AESLGVDLDR-LLVVQP--DTGEQALWIAEQL  126 (322)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHH---HHHTT--GGG-EEEEE---SSHHHHHHHHHHH
T ss_pred             CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhH---HHhcCccccc-eEEecC--CcHHHHHHHHHHH
Confidence            478999999999999999999999999999999999852 12222   2222211111 221111  1223333334443


Q ss_pred             -HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           94 -KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        94 -~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                       +...+|+||||..+.+....++-       ..+. +. .+-..|..-..+.+.+..+-...+..-|++|.+.
T Consensus       127 irsg~~~lVVvDSv~al~p~~E~e-------~~~~-~~-~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R  190 (322)
T PF00154_consen  127 IRSGAVDLVVVDSVAALVPKAELE-------GEIG-DQ-QVGLQARLMSQALRKLTPLLSKSNTTLIFINQVR  190 (322)
T ss_dssp             HHTTSESEEEEE-CTT-B-HHHHT-------TSTS-ST-SSSHHHHHHHHHHHHHHHHHHTTT-EEEEEEEES
T ss_pred             hhcccccEEEEecCcccCCHHHHh-------hccc-cc-cCcchHHHHHHHHHHHHHHHHhhceEEEEeehHH
Confidence             45678999999988875322211       1111 00 0011122223344444445556777889998875

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=97.73  E-value=0.00049  Score=71.74  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +-..-|+++|.++|||||+...|.
T Consensus       157 k~~adV~LVG~PNAGKSTLln~Ls  180 (500)
T PRK12296        157 KSVADVGLVGFPSAGKSSLISALS  180 (500)
T ss_pred             cccceEEEEEcCCCCHHHHHHHHh
Confidence            334558899999999999998887

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.72  E-value=0.0023  Score=65.59  Aligned_cols=118  Identities=23%  Similarity=0.320  Sum_probs=61.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      +..++++|.+|+||||+...|.      |....++. + . +...     . ......+                    .
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~-~-~-~gtt-----~-~~~~~~~--------------------~  216 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALL------GEERVIVS-D-I-AGTT-----R-DSIDIPF--------------------E  216 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHH------CCCeeecC-C-C-CCce-----E-CcEeEEE--------------------E
Confidence            4558889999999999998876      33322221 1 0 0000     0 0000000                    0


Q ss_pred             hCCCcEEEEeCCCCcccc-----HHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQID-----KAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d-----~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      ..+..+.|+||||.....     .+....+..+...-.+|.+++|+|+..+.  .....+..........-+|+||+|..
T Consensus       217 ~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       217 RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV  296 (429)
T ss_pred             ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence            134579999999964221     11111112222233468899999995432  22222222222223345899999975

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=97.72  E-value=0.00024  Score=62.85  Aligned_cols=83  Identities=16%  Similarity=0.093  Sum_probs=42.8

Q ss_pred             EEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCCCC-chhHHHHHHHH
Q 015657          102 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDS-RGGAALSVKEV  179 (403)
Q Consensus       102 IIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~~~-~~~~~~~~~~~  179 (403)
                      +|||||..........++..  ..-.++.+++|+|+........ .+..+.... ..-+++||.|... ....+....+.
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~--~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~-~ii~v~nK~Dl~~~~~~~~~~~~~~  117 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALIT--TLQDVDMLIYVHGANDPESRLPAGLLDIGVSK-RQIAVISKTDMPDADVAATRKLLLE  117 (158)
T ss_pred             cccCCccccCCHHHHHHHHH--HHhcCCEEEEEEeCCCcccccCHHHHhccCCC-CeEEEEEccccCcccHHHHHHHHHH
Confidence            58999975433333333222  1235689999999965432211 112222222 3458999999643 22223344444


Q ss_pred             hCC--CeEEe
Q 015657          180 SGK--PIKLV  187 (403)
Q Consensus       180 ~g~--pi~fi  187 (403)
                      .+.  |+.++
T Consensus       118 ~~~~~p~~~~  127 (158)
T PRK15467        118 TGFEEPIFEL  127 (158)
T ss_pred             cCCCCCEEEE
Confidence            453  55433

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.71  E-value=0.00088  Score=68.10  Aligned_cols=191  Identities=15%  Similarity=0.202  Sum_probs=100.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+--|+++|.|.+||||+...|.      |..-++++.-   |+..      ......++                    
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~~---aGTT------RD~I~~~~--------------------  221 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAIL------GEERVIVSDI---AGTT------RDSIDIEF--------------------  221 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhc------cCceEEecCC---CCcc------ccceeeeE--------------------
Confidence            45668999999999999998887      5433344311   1110      00111111                    


Q ss_pred             HhCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           94 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .+++..|++|||+|.-.-     ..+.......+..+-.++-+++|+|+..+  +.-.+++....+...-.-|++||+|.
T Consensus       222 e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl  301 (444)
T COG1160         222 ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDL  301 (444)
T ss_pred             EECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence            135778999999996431     11222222333333345888999999654  33344444444444445589999997


Q ss_pred             CCch-hHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHH
Q 015657          167 DSRG-GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN  245 (403)
Q Consensus       167 ~~~~-~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~e  245 (403)
                      -... .......+.......|++.          .|.-++|...|-+ +..+++.+.+....          ....++-.
T Consensus       302 ~~~~~~~~~~~k~~i~~~l~~l~~----------a~i~~iSA~~~~~-i~~l~~~i~~~~~~----------~~~ri~Ts  360 (444)
T COG1160         302 VEEDEATMEEFKKKLRRKLPFLDF----------APIVFISALTGQG-LDKLFEAIKEIYEC----------ATRRISTS  360 (444)
T ss_pred             CCchhhHHHHHHHHHHHHhccccC----------CeEEEEEecCCCC-hHHHHHHHHHHHHH----------hccccCHH
Confidence            5542 2223333332222222322          2223334444443 23444434433311          13456667


Q ss_pred             HHHHHHHHHHhcCCh
Q 015657          246 DFLKQTRTVARMGSM  260 (403)
Q Consensus       246 dl~~ql~~~~k~g~~  260 (403)
                      .|-+-++.+..+.|+
T Consensus       361 ~LN~~l~~a~~~~pP  375 (444)
T COG1160         361 LLNRVLEDAVAKHPP  375 (444)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            777777777777643

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.71  E-value=0.00027  Score=66.77  Aligned_cols=92  Identities=15%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh------------CCCcEEEEeccCCChhhHHHHHHhhhccCC------ceEeCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKK------------QGKSCMLVAGDVYRPAAIDQLVILGEQVGV------PVYTAG   77 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~------------~G~kVllVd~D~~rp~~~~~l~~~~~~~gv------~v~~~~   77 (403)
                      .+.+++|++|+||||++..+|...+.            .+.+|++++++-........+.......+.      .++..+
T Consensus         2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g   81 (239)
T cd01125           2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG   81 (239)
T ss_pred             ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence            46788999999999999999987662            467899999886554444444333332211      111110


Q ss_pred             C---------C-CCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 015657           78 T---------E-VKPSQIAKQGLEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        78 ~---------~-~~~~~~~~~~l~~~~~~~~D~VIIDtpg  107 (403)
                      .         . ......+...++.+...++++||||+..
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~  121 (239)
T cd01125          82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLV  121 (239)
T ss_pred             CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChH
Confidence            0         0 1122334444444544689999999543

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.71  E-value=0.00022  Score=62.63  Aligned_cols=40  Identities=38%  Similarity=0.630  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      +++++|.+||||||++..|+..+...|.++.+++.|..+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~   40 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH   40 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence            5789999999999999999999998899998899885543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.70  E-value=0.00016  Score=79.29  Aligned_cols=128  Identities=19%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCc----EEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~k----VllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~   88 (403)
                      .+.|.|+++|+.++||||++.+|......-..+    ..+.|.+   +  .++      ..|+.+........       
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~---~--~E~------~rgiTi~~~~~~~~-------   79 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFD---E--EEQ------ARGITIKAANVSMV-------   79 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCcc---H--HHH------HhhhhhhccceEEE-------
Confidence            456889999999999999999998654321111    1111111   0  011      11121111100000       


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHH-hhhcCCeeEEEEccCC
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLD  165 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlNk~D  165 (403)
                       + .....++.+.+|||||...+.......+    .  ..|.+++|+|+..+  ......+.. .....++ -+++||+|
T Consensus        80 -~-~~~~~~~~i~liDtPG~~df~~~~~~~l----~--~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D  150 (731)
T PRK07560         80 -H-EYEGKEYLINLIDTPGHVDFGGDVTRAM----R--AVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVD  150 (731)
T ss_pred             -E-EecCCcEEEEEEcCCCccChHHHHHHHH----H--hcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECch
Confidence             0 0011467899999999875432222222    2  23889999999544  222222222 2233443 58899999


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      ..
T Consensus       151 ~~  152 (731)
T PRK07560        151 RL  152 (731)
T ss_pred             hh
Confidence            64

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.69  E-value=0.00015  Score=66.63  Aligned_cols=92  Identities=22%  Similarity=0.372  Sum_probs=48.2

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH--HHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI--DQLVILGEQVGVPVYTAGTEVKPSQIAKQ   88 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~--~~l~~~~~~~gv~v~~~~~~~~~~~~~~~   88 (403)
                      +...|+++++.|.+||||||++..+...+.  +...++|+.|.++....  +.+....... ....   .......+...
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~-~~~~---~~~~a~~~~~~   84 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDE-ASEL---TQKEASRLAEK   84 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCC-THHH---HHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhh-hHHH---HHHHHHHHHHH
Confidence            346799999999999999999998887765  56777999998774331  2221111000 0000   00112234456


Q ss_pred             HHHHHHhCCCcEEEEeCCCCc
Q 015657           89 GLEEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l  109 (403)
                      .++.+...++++| +||....
T Consensus        85 ~~~~a~~~~~nii-~E~tl~~  104 (199)
T PF06414_consen   85 LIEYAIENRYNII-FEGTLSN  104 (199)
T ss_dssp             HHHHHHHCT--EE-EE--TTS
T ss_pred             HHHHHHHcCCCEE-EecCCCC
Confidence            6666666778755 5987764

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.69  E-value=0.00023  Score=66.30  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=35.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCC------CcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG------KSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G------~kVllVd~D~   53 (403)
                      ...++.|+|.+|+|||+++..++......+      .+|++++++-
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~   63 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG   63 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence            357899999999999999999999887777      8999999874

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.69  E-value=0.004  Score=67.54  Aligned_cols=90  Identities=22%  Similarity=0.188  Sum_probs=48.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~   91 (403)
                      -+..++|+|+.|+||||++..||+.|--. +.     +..+..  ............-.+++..+. .....+.+++.++
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~-----~~~PCG--~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe  109 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV-----TSQPCG--VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLE  109 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC-----CCCCCc--ccHHHHHHhcCCCceEEEecccccccHHHHHHHHH
Confidence            46778899999999999999999888532 21     111111  001111111111122333222 1223444555555


Q ss_pred             HHH----hCCCcEEEEeCCCCcc
Q 015657           92 EAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~~----~~~~D~VIIDtpg~l~  110 (403)
                      .+.    ..+|.++|||-.-.+.
T Consensus       110 ~a~~~P~~gr~KVIIIDEah~LT  132 (830)
T PRK07003        110 RAVYAPVDARFKVYMIDEVHMLT  132 (830)
T ss_pred             HHHhccccCCceEEEEeChhhCC
Confidence            442    2468899999888775

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.68  E-value=0.00082  Score=59.01  Aligned_cols=20  Identities=35%  Similarity=0.685  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      .|+++|.+|+||||+...|.
T Consensus         2 ~i~~~G~~~~GKssli~~l~   21 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLT   21 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHh
Confidence            47899999999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.68  E-value=0.00042  Score=60.29  Aligned_cols=83  Identities=19%  Similarity=0.129  Sum_probs=43.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhh---cCC-eeEEEEccCCCCC-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI---EIG-ITGAILTKLDGDS-  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~---~~~-i~GvIlNk~D~~~-  168 (403)
                      .+.+.|+||||.......    ....  .-..+.+++|+|.......   ......+..   ..+ ..-+|+||+|... 
T Consensus        47 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~  120 (164)
T cd04139          47 DVQLNILDTAGQEDYAAI----RDNY--HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK  120 (164)
T ss_pred             EEEEEEEECCChhhhhHH----HHHH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence            567999999997533211    1111  1233778888887544322   222222211   122 2458999999643 


Q ss_pred             c---hhHHHHHHHHhCCCeE
Q 015657          169 R---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 ~---~~~~~~~~~~~g~pi~  185 (403)
                      .   ...........+.|+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~  140 (164)
T cd04139         121 RQVSSEEAANLARQWGVPYV  140 (164)
T ss_pred             cccCHHHHHHHHHHhCCeEE
Confidence            1   1223344455666663

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=7.1e-05  Score=74.54  Aligned_cols=145  Identities=22%  Similarity=0.258  Sum_probs=94.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +.+-|.+...-.+||||++..+.++...-  +   +.+|+..-..+.++.......|+.+..+...             +
T Consensus        36 kirnigiiahidagktttterily~ag~~--~---s~g~vddgdtvtdfla~erergitiqsaav~-------------f   97 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAI--H---SAGDVDDGDTVTDFLAIERERGITIQSAAVN-------------F   97 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhh--h---cccccCCCchHHHHHHHHHhcCceeeeeeee-------------c
Confidence            34778888999999999999998655321  1   1233333334445545566678877755322             2


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCee-EEEEccCCCC--Cc
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGIT-GAILTKLDGD--SR  169 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~-GvIlNk~D~~--~~  169 (403)
                      .|++|.+.+|||||...+.-++-.    -.+++  |.++.|.|+..|-++.. .+|......++. ..++||+|..  ..
T Consensus        98 dwkg~rinlidtpghvdf~lever----clrvl--dgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anf  171 (753)
T KOG0464|consen   98 DWKGHRINLIDTPGHVDFRLEVER----CLRVL--DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANF  171 (753)
T ss_pred             ccccceEeeecCCCcceEEEEHHH----HHHHh--cCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhh
Confidence            378999999999998865333222    22333  78899999977744433 234444455553 4789999964  44


Q ss_pred             hhHHHHHHHHhCC
Q 015657          170 GGAALSVKEVSGK  182 (403)
Q Consensus       170 ~~~~~~~~~~~g~  182 (403)
                      ..++.++.+.+|.
T Consensus       172 e~avdsi~ekl~a  184 (753)
T KOG0464|consen  172 ENAVDSIEEKLGA  184 (753)
T ss_pred             hhHHHHHHHHhCC
Confidence            5667888888875

>COG4240 Predicted kinase [General function prediction only]

Probab=97.67  E-value=0.00019  Score=66.67  Aligned_cols=44  Identities=30%  Similarity=0.484  Sum_probs=39.4

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVY   54 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G-~kVllVd~D~~   54 (403)
                      ..+.|-|+.|+|++||||||++..|-..|+.+| ++++-.+.|-+
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl   90 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL   90 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence            456799999999999999999999999999998 79998888843

>cd00154 Rab Rab family

Probab=97.67  E-value=0.00028  Score=60.48  Aligned_cols=66  Identities=18%  Similarity=0.104  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHhhhc---CCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNIE---IGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~~~~---~~i~GvIlNk~D~~  167 (403)
                      ..+++.|+|+||......    .....  .-..+.+++|+|+.....   +......+...   ....-+|+||+|..
T Consensus        47 ~~~~~~l~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  118 (159)
T cd00154          47 KTVKLQIWDTAGQERFRS----ITPSY--YRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE  118 (159)
T ss_pred             EEEEEEEEecCChHHHHH----HHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence            357899999999743211    11111  123588899999955322   22222222221   23456899999984

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=97.66  E-value=0.00074  Score=69.26  Aligned_cols=134  Identities=15%  Similarity=0.184  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .-|+++|.++|||||+...|.      +.++-+.+ -++.        ++....+  ++..                  .
T Consensus       159 adVglVG~pNaGKSTLLn~Lt------~ak~kIa~-ypfT--------Tl~PnlG--~v~~------------------~  203 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVS------NAKPKIAN-YHFT--------TLVPNLG--VVET------------------D  203 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHH------cCCCcccc-CCcc--------eeceEEE--EEEE------------------e
Confidence            358999999999999998887      23332111 0110        1111111  1111                  1


Q ss_pred             CCCcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEEEecccH------HHHHHH---HHHhhhc--CCeeEEEE
Q 015657           96 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG------QEAAAL---VTTFNIE--IGITGAIL  161 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllVvda~~g------~~~~~~---~~~~~~~--~~i~GvIl  161 (403)
                      .++.++|+|+||...-   ...+...  -+..+-.++-+++|+|+...      ++....   +..+.+.  -...-||+
T Consensus       204 ~~~~~~laD~PGliega~~~~gLg~~--fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~  281 (424)
T PRK12297        204 DGRSFVMADIPGLIEGASEGVGLGHQ--FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA  281 (424)
T ss_pred             CCceEEEEECCCCcccccccchHHHH--HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence            2567999999997632   1112111  11222235788999998421      222222   2223221  23455899


Q ss_pred             ccCCCCCchhHHHHHHHHhCCCeEE
Q 015657          162 TKLDGDSRGGAALSVKEVSGKPIKL  186 (403)
Q Consensus       162 Nk~D~~~~~~~~~~~~~~~g~pi~f  186 (403)
                      ||+|.......+..+.+.++.++.+
T Consensus       282 NK~DL~~~~e~l~~l~~~l~~~i~~  306 (424)
T PRK12297        282 NKMDLPEAEENLEEFKEKLGPKVFP  306 (424)
T ss_pred             eCCCCcCCHHHHHHHHHHhCCcEEE
Confidence            9999743333444555556655533

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.66  E-value=0.00093  Score=62.07  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=35.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+..++++|++|+||||++..++..+...+.++..++++
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~   75 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA   75 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence            4567789999999999999999999988888899888876

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.66  E-value=0.00035  Score=66.46  Aligned_cols=77  Identities=23%  Similarity=0.435  Sum_probs=51.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..+++.|++|+|||+++.+++.+|.++|++|++++..    .....+.   ...     . .....    ..+.+..+  
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~----~l~~~l~---~~~-----~-~~~~~----~~~~l~~l--  160 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA----DIMSAMK---DTF-----S-NSETS----EEQLLNDL--  160 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH----HHHHHHH---HHH-----h-hcccc----HHHHHHHh--
Confidence            4688999999999999999999999999999988642    1222221   111     0 00011    12334444  


Q ss_pred             CCCcEEEEeCCCCccc
Q 015657           96 KNVDVVIVDTAGRLQI  111 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~  111 (403)
                      ..+|++|||-.|....
T Consensus       161 ~~~dlLvIDDig~~~~  176 (244)
T PRK07952        161 SNVDLLVIDEIGVQTE  176 (244)
T ss_pred             ccCCEEEEeCCCCCCC
Confidence            4799999999987653

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.66  E-value=0.00017  Score=69.21  Aligned_cols=40  Identities=30%  Similarity=0.530  Sum_probs=37.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      +|+|+|.+||||||++..|+..|.+.|.+|.+++.|.|..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            5899999999999999999999999999999999998765

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.65  E-value=0.0004  Score=63.84  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .+++.|+.||||||.|..+-.+...-|+.+-+|..||..
T Consensus         5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa   43 (273)
T KOG1534|consen    5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA   43 (273)
T ss_pred             eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence            356779999999999999999999999999999999643

>COG1084 Predicted GTPase [General function prediction only]

Probab=97.65  E-value=0.00027  Score=68.98  Aligned_cols=115  Identities=19%  Similarity=0.313  Sum_probs=64.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+|+|.|.|||||+..+|.      +-++-+-+   |      ++.  .+...+-.+                   .
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT------~AkpEvA~---Y------PFT--TK~i~vGhf-------------------e  211 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLT------TAKPEVAP---Y------PFT--TKGIHVGHF-------------------E  211 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHh------cCCCccCC---C------Ccc--ccceeEeee-------------------e
Confidence            3558999999999999998877      33332111   1      111  111112111                   1


Q ss_pred             hCCCcEEEEeCCCCccccHHh-----HHHHHHHhhhcCCceEEEEEecc--cH---HHHHHHHHHhhhcCC-eeEEEEcc
Q 015657           95 KKNVDVVIVDTAGRLQIDKAM-----MDELKDVKRVLNPTEVLLVVDAM--TG---QEAAALVTTFNIEIG-ITGAILTK  163 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l-----~~el~~i~~~~~~~~vllVvda~--~g---~~~~~~~~~~~~~~~-i~GvIlNk  163 (403)
                      .....+=+|||||.+.-+.+-     ...+.++. .+ .+.+++++|++  .|   +....+.....+.+. +.-+|+||
T Consensus       212 ~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~-hl-~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK  289 (346)
T COG1084         212 RGYLRIQVIDTPGLLDRPLEERNEIERQAILALR-HL-AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINK  289 (346)
T ss_pred             cCCceEEEecCCcccCCChHHhcHHHHHHHHHHH-Hh-cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            134478899999999753221     11222222 22 26789999983  33   333444444444444 46689999


Q ss_pred             CCCC
Q 015657          164 LDGD  167 (403)
Q Consensus       164 ~D~~  167 (403)
                      +|..
T Consensus       290 ~D~~  293 (346)
T COG1084         290 IDIA  293 (346)
T ss_pred             cccc
Confidence            9965

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=97.65  E-value=0.0011  Score=64.04  Aligned_cols=151  Identities=17%  Similarity=0.205  Sum_probs=81.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh----------ccCCceEeCCCCCCHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE----------QVGVPVYTAGTEVKPS   83 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~----------~~gv~v~~~~~~~~~~   83 (403)
                      +..+-+++|--|+||||+...++  ..+.|+|+.++-...--...++.......          ..+--|++.......+
T Consensus        56 rIPvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv  133 (391)
T KOG2743|consen   56 RIPVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV  133 (391)
T ss_pred             ccceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence            44667889999999999996665  34569999988755322222221111000          0111233322233445


Q ss_pred             HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHH---HHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hhhh---cC
Q 015657           84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMD---ELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TFNI---EI  154 (403)
Q Consensus        84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~---el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~~~---~~  154 (403)
                      ..+.+.++  +...||+|+++|.|.... ..+..   .=..+..-+.-|.++-|+||....-...-.+   .+++   ++
T Consensus       134 raie~lvq--kkGkfD~IllETTGlAnP-aPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi  210 (391)
T KOG2743|consen  134 RAIENLVQ--KKGKFDHILLETTGLANP-APIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI  210 (391)
T ss_pred             HHHHHHHh--cCCCcceEEEeccCCCCc-HHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH
Confidence            55555555  357899999999987542 11111   0112223334478899999854322211110   0111   11


Q ss_pred             C-eeEEEEccCCCCCc
Q 015657          155 G-ITGAILTKLDGDSR  169 (403)
Q Consensus       155 ~-i~GvIlNk~D~~~~  169 (403)
                      . -..+|+||+|.-..
T Consensus       211 A~AD~II~NKtDli~~  226 (391)
T KOG2743|consen  211 ALADRIIMNKTDLVSE  226 (391)
T ss_pred             hhhheeeeccccccCH
Confidence            1 24599999997655

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.64  E-value=0.0022  Score=63.22  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEEec
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAG   51 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G--~kVllVd~   51 (403)
                      .++++|++|+||||++..++..+...+  .++..+++
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~   74 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV   74 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence            578999999999999999999887544  34445554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.64  E-value=0.00045  Score=72.01  Aligned_cols=120  Identities=22%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+..|+++|.+||||||+...|+      |.+..++. +  .|..           ..+.+...               .
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~-~--~~gv-----------T~d~~~~~---------------~   81 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRIL------GRREAVVE-D--VPGV-----------TRDRVSYD---------------A   81 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHh------CcCccccc-C--CCCC-----------CEeeEEEE---------------E
Confidence            34558999999999999998887      33332222 1  1111           00001000               0


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ...+..+.|+||||.......+...+...  ...-.++.+++|+|+..+  ......+..+...-...-+|+||+|...
T Consensus        82 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~  160 (472)
T PRK03003         82 EWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER  160 (472)
T ss_pred             EECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence            12456789999999653222221111111  112246899999999643  2222233333322234458999999753

>PHA00729 NTP-binding motif containing protein

Probab=97.64  E-value=0.0002  Score=67.18  Aligned_cols=28  Identities=32%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .....|+++|+||+||||+|..|+..+.
T Consensus        15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         15 NGFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3445689999999999999999998875

>PRK06893 DNA replication initiation factor; Validated

Probab=97.64  E-value=0.0013  Score=61.85  Aligned_cols=37  Identities=11%  Similarity=0.183  Sum_probs=33.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+.+.|++|+|||+++.+++..+.++|.+|.++.++
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            4578999999999999999999999889999888764

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.64  E-value=0.0012  Score=63.21  Aligned_cols=49  Identities=20%  Similarity=0.371  Sum_probs=41.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL   62 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l   62 (403)
                      +.++++++|.+|+|||+++.+++...++.|.+|++|..|-.......++
T Consensus        22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~   70 (260)
T COG0467          22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENA   70 (260)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHH
Confidence            3588999999999999999999999999999999999996554444443

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.63  E-value=0.00038  Score=62.92  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=37.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~  167 (403)
                      .++.+.++|+||..... .+.   ..  .....+.+++|+|+.........   ...+..    .-.+.-+|+||.|..
T Consensus        59 ~~~~~~~~D~~G~~~~~-~~~---~~--~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~  131 (184)
T smart00178       59 GNIKFTTFDLGGHQQAR-RLW---KD--YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP  131 (184)
T ss_pred             CCEEEEEEECCCCHHHH-HHH---HH--HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence            46789999999974321 111   11  11245889999999654322221   111111    112355899999964

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=97.63  E-value=9.4e-05  Score=79.08  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=37.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      .++++.|+|..||||||++.+|...|.++|++|.+|..|-
T Consensus         9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~   48 (597)
T PRK14491          9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH   48 (597)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence            4689999999999999999999999999999999999853

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.63  E-value=7.7e-05  Score=68.51  Aligned_cols=44  Identities=36%  Similarity=0.563  Sum_probs=39.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ..+|.+|+++|.+||||||++..|+..|...|..+.+++.|..+
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~   64 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR   64 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence            35789999999999999999999999998889989999999655

>TIGR00345 arsA arsenite-activated ATPase (arsA)

Probab=97.61  E-value=0.0019  Score=62.84  Aligned_cols=25  Identities=36%  Similarity=0.412  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           31 VSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        31 la~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      +++++|.+++++|++|++||+|++.
T Consensus         1 ~a~a~a~~~a~~g~~vllv~~Dp~~   25 (284)
T TIGR00345         1 ISCATAIRLAEQGKKVLLVSTDPAH   25 (284)
T ss_pred             CHHHHHHHHHHCCCeEEEEECCCCC
Confidence            3688999999999999999999875

The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.60  E-value=0.00056  Score=59.57  Aligned_cols=65  Identities=14%  Similarity=0.111  Sum_probs=36.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh-hh---cCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF-NI---EIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~-~~---~~~i~GvIlNk~D~~  167 (403)
                      .+.+.|+|+||.......    ....  ...++.+++|+|+.........   .... ..   .-...-+|+||.|..
T Consensus        43 ~~~l~i~D~~G~~~~~~~----~~~~--~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  114 (160)
T cd04156          43 HLSLTVWDVGGQEKMRTV----WKCY--LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP  114 (160)
T ss_pred             ceEEEEEECCCCHhHHHH----HHHH--hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence            478999999996432111    1111  2245888999999654322222   2211 11   112345899999974

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.60  E-value=0.00018  Score=61.87  Aligned_cols=31  Identities=35%  Similarity=0.666  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|+++|++||||||++..|+..+.     ..+|+.|
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D   31 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQD   31 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHH
Confidence            588999999999999987775543     5678877

...

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.60  E-value=0.0002  Score=67.08  Aligned_cols=80  Identities=20%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      |..++++|++|+||||++..|+       .++++++.|--       ...+....++++...+. ..+.+.+.+.+..+.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~-------~~~l~g~~~~~v~~~d~-~~~~~~~~d~l~~~~   76 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS-------SKVLIGDENVDIADHDD-MPPIQAMVEFYVMQN   76 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc-------chhccCCCCCceeecCC-CCCHHHHHHHHHHHH
Confidence            5669999999999999997774       46778898832       11122233455554322 234444444454443


Q ss_pred             --hCCCcEEEEeCCCCc
Q 015657           95 --KKNVDVVIVDTAGRL  109 (403)
Q Consensus        95 --~~~~D~VIIDtpg~l  109 (403)
                        ..+||.|+||+...+
T Consensus        77 ~~~~~ydtVVIDsI~~l   93 (220)
T TIGR01618        77 IQAVKYDNIVIDNISAL   93 (220)
T ss_pred             hccccCCEEEEecHHHH
Confidence              357999999998875

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.59  E-value=0.00011  Score=79.37  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---H--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~--~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .+++.++||||||...+...+..      .+..+|.+++|+|+..+   +  +....+..+  ..+..-|++||+|..
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~------~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~--~~~~iivvvNK~D~~  170 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVT------GASTADLAIILVDARKGVLTQTRRHSFIASLL--GIRHVVLAVNKMDLV  170 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHH------HHHhCCEEEEEEECCCCccccCHHHHHHHHHh--CCCeEEEEEEecccc
Confidence            36778999999995432222221      22345889999999543   1  222222222  223334789999975

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.58  E-value=0.00041  Score=60.44  Aligned_cols=82  Identities=21%  Similarity=0.178  Sum_probs=44.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~-  169 (403)
                      .+++.++|+||.....    ......  ...++.+++|+|+.........   ...+..   .-.+.-+|.||+|.... 
T Consensus        48 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~  121 (164)
T smart00175       48 RVKLQIWDTAGQERFR----SITSSY--YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR  121 (164)
T ss_pred             EEEEEEEECCChHHHH----HHHHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence            3678899999964221    111111  1235889999998654333222   122211   12345589999996542 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~  139 (164)
T smart00175      122 QVSREEAEAFAEEHGLPF  139 (164)
T ss_pred             CCCHHHHHHHHHHcCCeE
Confidence               233444555566664

Rab GTPases are implicated in vesicle trafficking.

>PF13479 AAA_24: AAA domain

Probab=97.57  E-value=0.00016  Score=67.27  Aligned_cols=77  Identities=25%  Similarity=0.355  Sum_probs=49.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ++..++|.|.+|+||||++..+        -+++++|+|.-.-.    +..+.   +.+.+...    ..+.+.+.+..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~----~~~~~---~~~~i~i~----s~~~~~~~~~~l   62 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDS----LKFLD---DGDVIPIT----SWEDFLEALDEL   62 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccc----hhhhc---CCCeeCcC----CHHHHHHHHHHH
Confidence            4567899999999999999766        58999999833111    11111   23333322    344444555443


Q ss_pred             H--hCCCcEEEEeCCCCc
Q 015657           94 K--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~--~~~~D~VIIDtpg~l  109 (403)
                      .  ..+||.||||+...+
T Consensus        63 ~~~~~~y~tiVIDsis~~   80 (213)
T PF13479_consen   63 EEDEADYDTIVIDSISWL   80 (213)
T ss_pred             HhccCCCCEEEEECHHHH
Confidence            2  368999999998865

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.57  E-value=8.5e-05  Score=67.31  Aligned_cols=39  Identities=38%  Similarity=0.530  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      +|+|+|.+||||||+|..|+..+...|.++.++..|-+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~   39 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY   39 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence            588999999999999999999999999999999999553

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.56  E-value=0.00013  Score=63.60  Aligned_cols=37  Identities=35%  Similarity=0.457  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE-EEeccC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDV   53 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl-lVd~D~   53 (403)
                      +|+|+|..||||||++..|..+|.++|++|. +.+.|.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence            6899999999999999999999999999998 677776

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=97.56  E-value=0.0012  Score=63.03  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHH--HHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPS--QIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~--~~~~~~   89 (403)
                      +..+++|.|.+|+||||++.++|..++.. |++|++++.+.........+  ++...+++...... ...+.  +.+.++
T Consensus        18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~--la~~s~v~~~~i~~g~l~~~e~~~~~~~   95 (259)
T PF03796_consen   18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARL--LARLSGVPYNKIRSGDLSDEEFERLQAA   95 (259)
T ss_dssp             TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHH--HHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred             cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH--HHHhhcchhhhhhccccCHHHHHHHHHH
Confidence            45788999999999999999999999987 69999999986554443332  23333443221111 11122  233445


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      ...+  ....+.|.|++.. .. ..+...+..+.... ...-++|||.
T Consensus        96 ~~~l--~~~~l~i~~~~~~-~~-~~i~~~i~~~~~~~-~~~~~v~IDy  138 (259)
T PF03796_consen   96 AEKL--SDLPLYIEDTPSL-TI-DDIESKIRRLKREG-KKVDVVFIDY  138 (259)
T ss_dssp             HHHH--HTSEEEEEESSS--BH-HHHHHHHHHHHHHS-TTEEEEEEEE
T ss_pred             HHHH--hhCcEEEECCCCC-CH-HHHHHHHHHHHhhc-cCCCEEEech
Confidence            5555  3556777887753 22 22223333333332 2334777786

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00029  Score=74.66  Aligned_cols=135  Identities=25%  Similarity=0.280  Sum_probs=84.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..++++|.|.|||||+-.+|.      |-+.-+                 +.=.|+.+-....             .++.
T Consensus         4 ~~valvGNPNvGKTtlFN~LT------G~~q~V-----------------gNwpGvTVEkkeg-------------~~~~   47 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALT------GANQKV-----------------GNWPGVTVEKKEG-------------KLKY   47 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHh------ccCcee-----------------cCCCCeeEEEEEE-------------EEEe
Confidence            348999999999999998887      433321                 1112232221100             0012


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhh-hcCCeeEEEEccCCCCCchhH
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFN-IEIGITGAILTKLDGDSRGGA  172 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~~~~  172 (403)
                      .++++-|||.||....+....+|.  .++...-.||-++-|+||+.-+......-.+. -+.+ .-+.+|++|...+.|.
T Consensus        48 ~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~Gi  126 (653)
T COG0370          48 KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIP-MILALNMIDEAKKRGI  126 (653)
T ss_pred             cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcCC
Confidence            578899999999987633322322  22233346789999999977655555443333 3334 5589999998766544


Q ss_pred             ---HHHHHHHhCCCeEEe
Q 015657          173 ---ALSVKEVSGKPIKLV  187 (403)
Q Consensus       173 ---~~~~~~~~g~pi~fi  187 (403)
                         ...+.+.+|+||..+
T Consensus       127 ~ID~~~L~~~LGvPVv~t  144 (653)
T COG0370         127 RIDIEKLSKLLGVPVVPT  144 (653)
T ss_pred             cccHHHHHHHhCCCEEEE
Confidence               355777899999644

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=97.55  E-value=0.00059  Score=59.96  Aligned_cols=82  Identities=16%  Similarity=0.141  Sum_probs=43.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hhhh---cCCeeEEEEccCCCCCch
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TFNI---EIGITGAILTKLDGDSRG  170 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~~~---~~~i~GvIlNk~D~~~~~  170 (403)
                      .+.+-|+||||.....    ......  .-.++.+++|+|+....+......   .+..   .-...-+|.||.|.....
T Consensus        50 ~~~~~i~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~  123 (166)
T cd01869          50 TIKLQIWDTAGQERFR----TITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR  123 (166)
T ss_pred             EEEEEEEECCCcHhHH----HHHHHH--hCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence            4678899999954221    111111  124588899999966544433322   1111   112344788999964321


Q ss_pred             ----hHHHHHHHHhCCCe
Q 015657          171 ----GAALSVKEVSGKPI  184 (403)
Q Consensus       171 ----~~~~~~~~~~g~pi  184 (403)
                          ..+.......+.|+
T Consensus       124 ~~~~~~~~~~~~~~~~~~  141 (166)
T cd01869         124 VVDYSEAQEFADELGIPF  141 (166)
T ss_pred             CCCHHHHHHHHHHcCCeE
Confidence                23344455566665

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04155 Arl3 Arl3 subfamily

Probab=97.55  E-value=0.0011  Score=58.63  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=19.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ...++++|++||||||+...|.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~   35 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLA   35 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHh
Confidence            4558999999999999998775

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK08760 replicative DNA helicase; Provisional

Probab=97.54  E-value=0.0015  Score=68.15  Aligned_cols=145  Identities=19%  Similarity=0.271  Sum_probs=81.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~   89 (403)
                      +..+++|.|.+|+||||++.++|...+. .|++|+++.++.........+.  +...+++...... ....  ...+..+
T Consensus       228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~--a~~s~i~~~~i~~g~l~~~e~~~~~~a  305 (476)
T PRK08760        228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLI--SSNGRINAQRLRTGALEDEDWARVTGA  305 (476)
T ss_pred             CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHH--HhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence            4578888999999999999999998875 5999999998855443333321  2222232211111 1222  2234455


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---c--cH------H---HHHHHHHHhhhcCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---M--TG------Q---EAAALVTTFNIEIG  155 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~--~g------~---~~~~~~~~~~~~~~  155 (403)
                      +..+.  +..+.|-|+|+ +.. ..+...+..+.....  .-++|||.   .  .+      +   .+.+.++.+...++
T Consensus       306 ~~~l~--~~~l~I~d~~~-~t~-~~I~~~~r~l~~~~~--~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~  379 (476)
T PRK08760        306 IKMLK--ETKIFIDDTPG-VSP-EVLRSKCRRLKREHD--LGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELN  379 (476)
T ss_pred             HHHHh--cCCEEEeCCCC-CCH-HHHHHHHHHHHHhcC--CCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence            55553  45666666665 332 222233333332222  23677775   1  01      1   23334455667788


Q ss_pred             eeEEEEccCCC
Q 015657          156 ITGAILTKLDG  166 (403)
Q Consensus       156 i~GvIlNk~D~  166 (403)
                      +..|++..+..
T Consensus       380 ipVi~lsQLnR  390 (476)
T PRK08760        380 VPVIALSQLNR  390 (476)
T ss_pred             CEEEEeeccCc
Confidence            88788877754

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.54  E-value=0.00062  Score=60.41  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=37.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+|+||...... +   ...  ....++.+++|+|+......   ......+..    .-.+.-+|.||.|...
T Consensus        41 ~~~~~~i~D~~G~~~~~~-~---~~~--~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~  114 (167)
T cd04161          41 DKYEVCIFDLGGGANFRG-I---WVN--YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN  114 (167)
T ss_pred             CCEEEEEEECCCcHHHHH-H---HHH--HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence            467899999999642211 1   111  12245889999998654322   222222211    1123458999999654

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>TIGR00665 DnaB replicative DNA helicase

Probab=97.54  E-value=0.0022  Score=66.08  Aligned_cols=145  Identities=19%  Similarity=0.253  Sum_probs=78.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHHH--HHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQI--AKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~~--~~~~   89 (403)
                      +..+++|+|.+|+||||++.++|..++. .|++|+++.++.........+  .+...+++..... ......+.  +..+
T Consensus       194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~--~~~~~~v~~~~~~~g~l~~~~~~~~~~a  271 (434)
T TIGR00665       194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRM--LSSESRVDSQKLRTGKLSDEDWEKLTSA  271 (434)
T ss_pred             CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHH--HHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence            3478899999999999999999999875 699999999986544433332  1222233321111 11222222  3444


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc---c-------H-HHH---HHHHHHhhhcCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T-------G-QEA---AALVTTFNIEIG  155 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~---~-------g-~~~---~~~~~~~~~~~~  155 (403)
                      ...+.  +..+.|-|+++ +..+ .+...+..+.....  .-++|||..   .       . ++.   ...++.+....+
T Consensus       272 ~~~l~--~~~l~i~d~~~-~~~~-~i~~~i~~~~~~~~--~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~  345 (434)
T TIGR00665       272 AGKLS--EAPLYIDDTPG-LTIT-ELRAKARRLKREHG--LGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELN  345 (434)
T ss_pred             HHHHh--cCCEEEECCCC-CCHH-HHHHHHHHHHHhcC--CCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            44442  34455555544 2221 22222233332222  226666751   0       0 111   233445566777


Q ss_pred             eeEEEEccCCC
Q 015657          156 ITGAILTKLDG  166 (403)
Q Consensus       156 i~GvIlNk~D~  166 (403)
                      +..++++.+..
T Consensus       346 i~vi~lsqlnr  356 (434)
T TIGR00665       346 VPVIALSQLSR  356 (434)
T ss_pred             CeEEEEeccCc
Confidence            87788877654

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.53  E-value=0.00011  Score=61.40  Aligned_cols=31  Identities=39%  Similarity=0.644  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|+|+|++||||||+|..||..+   |..+  ++.|
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~---~~~~--i~~d   31 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL---GFPV--ISMD   31 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH---TCEE--EEEH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH---CCeE--EEec
Confidence            68999999999999999998777   5554  4554

...

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.53  E-value=0.00016  Score=66.85  Aligned_cols=41  Identities=34%  Similarity=0.518  Sum_probs=35.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .++.+|+|+|.+||||||++..|+..+  .+..+.+++.|.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~   44 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY   44 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence            468899999999999999999999988  45688899998753

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.53  E-value=0.012  Score=65.35  Aligned_cols=94  Identities=20%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      .-+..++|+|+.|+||||++..||+.|-= .|....  -|....  ....+. .+....++++..+. ....++.+++..
T Consensus        35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~--pCg~C~--sC~~~~-~g~~~~~dv~eidaas~~~Vd~iR~l~  109 (824)
T PRK07764         35 RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST--PCGECD--SCVALA-PGGPGSLDVTEIDAASHGGVDDARELR  109 (824)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC--CCcccH--HHHHHH-cCCCCCCcEEEecccccCCHHHHHHHH
Confidence            34567899999999999999999988852 221100  111111  111111 11112233333222 222344444443


Q ss_pred             HHHH----hCCCcEEEEeCCCCccc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~~  111 (403)
                      +.+.    ...|.++|||-+-.+..
T Consensus       110 ~~~~~~p~~~~~KV~IIDEad~lt~  134 (824)
T PRK07764        110 ERAFFAPAESRYKIFIIDEAHMVTP  134 (824)
T ss_pred             HHHHhchhcCCceEEEEechhhcCH
Confidence            3321    35788999998877753

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.53  E-value=0.00073  Score=66.21  Aligned_cols=120  Identities=19%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .....|+++|.+|+||||+...|.      |.++..++.  +.+..          ........                
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIl------G~~v~~vs~--f~s~t----------~~~~~~~~----------------   81 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSII------GERIATVSA--FQSEG----------LRPMMVSR----------------   81 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHh------CCCcccccC--CCCcc----------eeEEEEEE----------------
Confidence            345668999999999999998888      666644331  11110          00000100                


Q ss_pred             HHhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEE--ecc-cH---HHHHHHHH-HhhhcC-CeeEEEE
Q 015657           93 AKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVV--DAM-TG---QEAAALVT-TFNIEI-GITGAIL  161 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVv--da~-~g---~~~~~~~~-~~~~~~-~i~GvIl  161 (403)
                       ...++.+.||||||.....   ......+..+.....++.+++|.  |.. ..   ..+...+. .|.+.+ ...-|++
T Consensus        82 -~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf  160 (313)
T TIGR00991        82 -TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL  160 (313)
T ss_pred             -EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence             0146789999999987531   22222222222222467777774  331 11   23333332 343332 3355888


Q ss_pred             ccCCCC
Q 015657          162 TKLDGD  167 (403)
Q Consensus       162 Nk~D~~  167 (403)
                      |+.|..
T Consensus       161 Th~d~~  166 (313)
T TIGR00991       161 THAQFS  166 (313)
T ss_pred             ECCccC
Confidence            999844

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.53  E-value=0.0013  Score=65.40  Aligned_cols=39  Identities=26%  Similarity=0.430  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR   55 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~r   55 (403)
                      +++++|++|+||||++..|+.+|. ..|++|.+++.|-+=
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i   40 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII   40 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence            368899999999999999999998 589999999999654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.52  E-value=0.00065  Score=68.97  Aligned_cols=43  Identities=28%  Similarity=0.361  Sum_probs=38.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .+|.+|.|+|.+||||||++..|...+...|.++..|..|-+-
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            3789999999999999999999998888778899999888654

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.52  E-value=0.00037  Score=65.36  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~   53 (403)
                      +..++.++|.+|+||||++..++......      +.+|++++++-
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            35889999999999999999999775543      37899999875

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.51  E-value=0.0013  Score=55.84  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      -|+++|.+||||||+...|.
T Consensus         3 ki~~~G~~~~GKstl~~~l~   22 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLL   22 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999997776

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PLN02796 D-glycerate 3-kinase

Probab=97.51  E-value=0.00063  Score=67.58  Aligned_cols=43  Identities=28%  Similarity=0.360  Sum_probs=37.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .+|.+|.|+|.+||||||++..|...+...|.++..|..|-+-
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4688999999999999999999999998778888888877543

>cd04154 Arl2 Arl2 subfamily

Probab=97.51  E-value=0.00071  Score=60.14  Aligned_cols=66  Identities=12%  Similarity=0.126  Sum_probs=36.6

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh-h---hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF-N---IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~-~---~~~~i~GvIlNk~D~~~  168 (403)
                      ++.+.++||||...... +   ....  ...++.+++|+|+.........   ...+ .   ..-...-+|+||+|...
T Consensus        57 ~~~l~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (173)
T cd04154          57 GYKLNIWDVGGQKTLRP-Y---WRNY--FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG  129 (173)
T ss_pred             CEEEEEEECCCCHHHHH-H---HHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence            57889999999643211 1   1111  2245888999999655332222   1111 1   11123448999999643

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.51  E-value=0.00029  Score=62.24  Aligned_cols=66  Identities=20%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKL  164 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~  164 (403)
                      ..+++||||||....+..-..-+....  -..+.+++|+++..   ..+.....+.........-+|+||+
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~--~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEITEEYL--PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHHHHHH--STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhHHHHHHhh--ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            457999999998653221111112222  34578889998843   2344444444444555577888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=97.50  E-value=0.0014  Score=57.18  Aligned_cols=82  Identities=16%  Similarity=0.039  Sum_probs=42.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhh---hcCC-eeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFN---IEIG-ITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~---~~~~-i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||...... +..   ...  ...+.+++|+|...........   ..+.   ...+ +.-+|.||+|....
T Consensus        49 ~~~~~i~Dt~G~~~~~~-~~~---~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          49 WAILDILDTAGQEEFSA-MRE---QYM--RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ  122 (164)
T ss_pred             EEEEEEEECCCCcchhH-HHH---HHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence            35688999999653321 111   111  2347889999986544332221   1111   1112 34478999996532


Q ss_pred             h----hHHHHHHHHhCCCe
Q 015657          170 G----GAALSVKEVSGKPI  184 (403)
Q Consensus       170 ~----~~~~~~~~~~g~pi  184 (403)
                      .    .......+..+.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (164)
T cd04145         123 RKVSREEGQELARKLKIPY  141 (164)
T ss_pred             ceecHHHHHHHHHHcCCcE
Confidence            2    12233444455555

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.50  E-value=0.00058  Score=57.49  Aligned_cols=42  Identities=31%  Similarity=0.446  Sum_probs=35.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ....++++|++|+||||++..++..+...+.+|..+++....
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~   59 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL   59 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence            456789999999999999999999998778899888877443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.50  E-value=0.0009  Score=59.68  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=18.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +-|+++|.+|+||||+...+.
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~   22 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFV   22 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999997776

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=97.50  E-value=0.0021  Score=66.04  Aligned_cols=90  Identities=19%  Similarity=0.314  Sum_probs=55.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~   89 (403)
                      +..++++.|.+|+||||++.++|..++ +.|++|++++++.........+  .+...+++...... ....  ...+..+
T Consensus       193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl--~~~~~~v~~~~~~~~~l~~~~~~~~~~~  270 (421)
T TIGR03600       193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL--LASKSGINTGNIRTGRFNDSDFNRLLNA  270 (421)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence            457889999999999999999998887 6799999999885433332222  23333444322111 1222  2234455


Q ss_pred             HHHHHhCCCcEEEEeCCC
Q 015657           90 LEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg  107 (403)
                      +..+  .+..+.|-|+++
T Consensus       271 ~~~l--~~~~l~i~d~~~  286 (421)
T TIGR03600       271 VDRL--SEKDLYIDDTGG  286 (421)
T ss_pred             HHHH--hcCCEEEECCCC
Confidence            5555  345666666654

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>cd00876 Ras Ras family

Probab=97.50  E-value=0.00066  Score=58.67  Aligned_cols=82  Identities=15%  Similarity=0.079  Sum_probs=43.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhh-cCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNI-EIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~-~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.++|+||....... .   ...  ....+.+++|+|....+.....   ...   ... ...+.-+|+||+|....
T Consensus        46 ~~~~~l~D~~g~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  119 (160)
T cd00876          46 TYTLDILDTAGQEEFSAM-R---DLY--IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE  119 (160)
T ss_pred             EEEEEEEECCChHHHHHH-H---HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence            477899999996532111 1   111  1234788899898654433222   221   222 12334589999996542


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+.......+.|+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~  138 (160)
T cd00876         120 RQVSKEEGKALAKEWGCPF  138 (160)
T ss_pred             ceecHHHHHHHHHHcCCcE
Confidence                123333444445555

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN03118 Rab family protein; Provisional

Probab=97.50  E-value=0.0018  Score=59.84  Aligned_cols=65  Identities=18%  Similarity=0.289  Sum_probs=37.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH-------hhhcCC-eeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT-------FNIEIG-ITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~-------~~~~~~-i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||...... +.   ...  ....+.+++|+|....++.......       +..... +.-+|.||+|..
T Consensus        61 ~~~l~l~Dt~G~~~~~~-~~---~~~--~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~  133 (211)
T PLN03118         61 RLKLTIWDTAGQERFRT-LT---SSY--YRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE  133 (211)
T ss_pred             EEEEEEEECCCchhhHH-HH---HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            47889999999754321 11   111  1235788999999765444333221       111111 234788999964

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.50  E-value=0.0024  Score=66.04  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .-+.+.|++|+|||+++..++..+...|.+|+.+.++
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~  178 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE  178 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence            4578999999999999999999999889999988866

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.48  E-value=0.00036  Score=61.92  Aligned_cols=25  Identities=40%  Similarity=0.566  Sum_probs=22.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +++++++|-+|+||||++..+...+
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            6899999999999999998777666

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.0016  Score=62.71  Aligned_cols=149  Identities=24%  Similarity=0.267  Sum_probs=85.0

Q ss_pred             cccCCCC-EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHH
Q 015657            9 VFAKSRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK   87 (403)
Q Consensus         9 ~~~~~~~-~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~   87 (403)
                      +|...+| -.|..+|.-.-||||+++++...|++.|... ..+-|     .++.. ...+..|+.+-++..+.       
T Consensus         5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~-~~~y~-----~id~a-PeEk~rGITIntahvey-------   70 (394)
T COG0050           5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAE-AKAYD-----QIDNA-PEEKARGITINTAHVEY-------   70 (394)
T ss_pred             hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhcccc-ccchh-----hhccC-chHhhcCceeccceeEE-------
Confidence            4555555 4466779999999999999999999887332 12212     11111 12234455544332211       


Q ss_pred             HHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccC
Q 015657           88 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL  164 (403)
Q Consensus        88 ~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~  164 (403)
                            ...+-.|.-+||||.-.--..++.      .+...|..+||+.|..|   |.-..++-.-.-.++..-+++||+
T Consensus        71 ------et~~rhyahVDcPGHaDYvKNMIt------gAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~  138 (394)
T COG0050          71 ------ETANRHYAHVDCPGHADYVKNMIT------GAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKV  138 (394)
T ss_pred             ------ecCCceEEeccCCChHHHHHHHhh------hHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecc
Confidence                  124567899999996532222322      22334888999988544   333333333333455556899999


Q ss_pred             CCCCchhHH-------HHHHHHhCCC
Q 015657          165 DGDSRGGAA-------LSVKEVSGKP  183 (403)
Q Consensus       165 D~~~~~~~~-------~~~~~~~g~p  183 (403)
                      |.-.....+       .++...++.|
T Consensus       139 Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050         139 DMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            976544332       2344555554

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.48  E-value=0.006  Score=63.21  Aligned_cols=38  Identities=21%  Similarity=0.432  Sum_probs=33.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDV   53 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~   53 (403)
                      ..++++|++|+|||+++..++..+.++  +.+|..+.++-
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~  188 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK  188 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence            458899999999999999999999876  78898888763

>PF13245 AAA_19: Part of AAA domain

Probab=97.47  E-value=0.00021  Score=55.51  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC----CCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~----G~kVllVd~D   52 (403)
                      +..+++|.|++|+||||++.+++.++...    +.+|+++...
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t   51 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT   51 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence            35667889999999998888888888765    8899988743

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.47  E-value=0.025  Score=60.69  Aligned_cols=93  Identities=19%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~   91 (403)
                      .-+..++|+|++|+||||++..||.++--.......-.|.     ..+....+......+++..+. .....+.+++.++
T Consensus        36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~-----~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~  110 (585)
T PRK14950         36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG-----TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIE  110 (585)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc-----cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHH
Confidence            3456789999999999999999998885211100000110     011111222233333433222 2223444555444


Q ss_pred             HHH----hCCCcEEEEeCCCCcc
Q 015657           92 EAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~~----~~~~D~VIIDtpg~l~  110 (403)
                      .+.    ..++.+||||-+-.+.
T Consensus       111 ~~~~~p~~~~~kVvIIDEa~~L~  133 (585)
T PRK14950        111 RVQFRPALARYKVYIIDEVHMLS  133 (585)
T ss_pred             HHhhCcccCCeEEEEEeChHhCC
Confidence            432    2457899999876664

>PRK09165 replicative DNA helicase; Provisional

Probab=97.46  E-value=0.0018  Score=67.97  Aligned_cols=145  Identities=22%  Similarity=0.271  Sum_probs=78.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC---------------CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ---------------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT   78 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~---------------G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~   78 (403)
                      +..+++|.|.+|+||||++.++|...+..               |.+|+++.+..........+  ++...+++......
T Consensus       216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~--la~~s~v~~~~i~~  293 (497)
T PRK09165        216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRI--LSEQSEISSSKIRR  293 (497)
T ss_pred             CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhc
Confidence            34788899999999999999999988753               78999999885544433332  22333444322111


Q ss_pred             -CCCH--HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc---c-------H---H-
Q 015657           79 -EVKP--SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T-------G---Q-  141 (403)
Q Consensus        79 -~~~~--~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~---~-------g---~-  141 (403)
                       ....  ...+.++...+  ....+.|-|+|+ +..+ .+...+..+.....  .-++|||..   .       .   + 
T Consensus       294 ~~l~~~e~~~l~~a~~~l--~~~~l~I~d~~~-~ti~-~i~~~ir~l~~~~~--~~lvvIDyLqli~~~~~~~~~~r~~e  367 (497)
T PRK09165        294 GKISEEDFEKLVDASQEL--QKLPLYIDDTPA-LSIS-QLRARARRLKRQHG--LDLLVVDYLQLIRGSSKRSSDNRVQE  367 (497)
T ss_pred             CCCCHHHHHHHHHHHHHH--hcCCeEEeCCCC-CCHH-HHHHHHHHHHHhcC--CCEEEEcchHhccCCCCCCCCchHHH
Confidence             1222  22334444444  245566656554 3321 22222222222211  226666651   0       0   1 


Q ss_pred             --HHHHHHHHhhhcCCeeEEEEccCCC
Q 015657          142 --EAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus       142 --~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                        .+.+.++.+....++..+++..+..
T Consensus       368 v~~is~~LK~lAkel~ipVi~lsQLnR  394 (497)
T PRK09165        368 ISEITQGLKALAKELNIPVIALSQLSR  394 (497)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEeecccc
Confidence              1223345566777888788877764

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.46  E-value=0.00087  Score=59.84  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=37.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh-h---cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN-I---EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~-~---~~~i~GvIlNk~D~~~  168 (403)
                      ++..+.++|+||.......    ....  .-.++.+++|+|+.........   ...+. .   .-....+|+||+|...
T Consensus        57 ~~~~~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          57 KNIRFLMWDIGGQESLRSS----WNTY--YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             CCeEEEEEECCCCHHHHHH----HHHH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence            3568999999997432111    1111  1245889999999655333222   22221 1   1123458999999653

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01864 Rab19 Rab19 subfamily

Probab=97.46  E-value=0.00081  Score=59.08  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=35.7

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHH---hhhcCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTT---FNIEIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~---~~~~~~i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||.....    ......  .-..+.+++|+|.........   ....   +...-.+.-+|.||+|..
T Consensus        51 ~~~l~i~D~~G~~~~~----~~~~~~--~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  121 (165)
T cd01864          51 RVKLQIWDTAGQERFR----TITQSY--YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE  121 (165)
T ss_pred             EEEEEEEECCChHHHH----HHHHHH--hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            3688999999963211    111111  123588899999966533322   1221   111112244889999964

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.46  E-value=0.0013  Score=68.52  Aligned_cols=120  Identities=18%  Similarity=0.186  Sum_probs=63.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+..|+++|.+++||||+...|.      +....++..  . |....      ..... .+                   
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~--~-~gtT~------d~~~~-~~-------------------  254 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD--V-AGTTV------DPVDS-LI-------------------  254 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh------CCCcccccC--C-CCccC------CcceE-EE-------------------
Confidence            35668899999999999998886      333222221  0 11100      00000 01                   


Q ss_pred             HhCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           94 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      ...+..+.|+||||....     .......+......-.++.+++|+|+..+  ......+......-...-+|+||+|.
T Consensus       255 ~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl  334 (472)
T PRK03003        255 ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL  334 (472)
T ss_pred             EECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence            013567889999995311     12222222222223356889999998543  22223333333222345589999997


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       335 ~~  336 (472)
T PRK03003        335 VD  336 (472)
T ss_pred             CC
Confidence            53

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.45  E-value=0.043  Score=54.80  Aligned_cols=95  Identities=24%  Similarity=0.352  Sum_probs=53.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC----C--CcEEEEeccCCChhhHHHHHHhhhcc---CCceEeCCCCCCH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ----G--KSCMLVAGDVYRPAAIDQLVILGEQV---GVPVYTAGTEVKP   82 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~----G--~kVllVd~D~~rp~~~~~l~~~~~~~---gv~v~~~~~~~~~   82 (403)
                      +..+..++|+|++|+|||+++..++..+...    +  ..+..++|....... .-+..+....   +..+-.  .....
T Consensus        37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~-~~~~~i~~~l~~~~~~~~~--~~~~~  113 (365)
T TIGR02928        37 GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY-QVLVELANQLRGSGEEVPT--TGLST  113 (365)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH-HHHHHHHHHHhhcCCCCCC--CCCCH
Confidence            3456678999999999999999999988642    2  356667775443211 1111111211   222111  11122


Q ss_pred             HHHHHHHHHHHH-hCCCcEEEEeCCCCc
Q 015657           83 SQIAKQGLEEAK-KKNVDVVIVDTAGRL  109 (403)
Q Consensus        83 ~~~~~~~l~~~~-~~~~D~VIIDtpg~l  109 (403)
                      .+........+. ....-++|||=.-.+
T Consensus       114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L  141 (365)
T TIGR02928       114 SEVFRRLYKELNERGDSLIIVLDEIDYL  141 (365)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence            334444444443 234567899987776

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.45  E-value=0.0012  Score=64.30  Aligned_cols=36  Identities=28%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +++|+++|++||||||+|..|+..+.    ....++.|..
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~   37 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDL   37 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence            57899999999999999999887662    4567888844

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.45  E-value=0.0014  Score=59.00  Aligned_cols=89  Identities=25%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCC--------CCHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTE--------VKPS   83 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~--------~~~~   83 (403)
                      +..+.+++| .|.||||.|..+|...+.+|++|+++..--..  .+-..-+..    .++.+...+..        ....
T Consensus         5 ~Gli~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~----~~~~~~~~g~g~~~~~~~~~~~~   79 (173)
T TIGR00708         5 RGIIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP----HGVEFQVMGTGFTWETQNREADT   79 (173)
T ss_pred             ccEEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh----cCcEEEECCCCCeecCCCcHHHH
Confidence            345555545 99999999999999999999999877543221  111112211    14444333221        1112


Q ss_pred             HHHHHHHHHH----HhCCCcEEEEeCCC
Q 015657           84 QIAKQGLEEA----KKKNVDVVIVDTAG  107 (403)
Q Consensus        84 ~~~~~~l~~~----~~~~~D~VIIDtpg  107 (403)
                      ..++++++.+    ....||+||+|--.
T Consensus        80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~  107 (173)
T TIGR00708        80 AIAKAAWQHAKEMLADPELDLVLLDELT  107 (173)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence            2344444443    34789999999754

Alternate name: corrinoid adenosyltransferase.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.44  E-value=0.00078  Score=58.61  Aligned_cols=67  Identities=18%  Similarity=0.121  Sum_probs=38.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~~~  169 (403)
                      ++++.|+|+||....... .   ...  ....+.+++|+|+.........   ...+..    .-.+.-+|.||+|....
T Consensus        42 ~~~~~i~D~~G~~~~~~~-~---~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~  115 (158)
T cd00878          42 NVSFTVWDVGGQDKIRPL-W---KHY--YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA  115 (158)
T ss_pred             CEEEEEEECCCChhhHHH-H---HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence            578999999997543111 1   111  1234888999999765333222   222111    12234478899997643

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.44  E-value=0.0086  Score=61.93  Aligned_cols=37  Identities=22%  Similarity=0.460  Sum_probs=32.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D   52 (403)
                      .-++++|++|+|||+++.+++..+.+.  +.+|++++++
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~  169 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence            458999999999999999999998765  6789988876

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.44  E-value=0.005  Score=58.15  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..++++|++|+|||+++..++..+...|++|.++.+|
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~   82 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD   82 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence            5689999999999999999999998889999988876

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.43  E-value=0.0017  Score=56.67  Aligned_cols=19  Identities=26%  Similarity=0.644  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...+.
T Consensus         3 i~v~G~~~~GKTsli~~~~   21 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFV   21 (164)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999998776

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.43  E-value=0.00077  Score=73.82  Aligned_cols=119  Identities=17%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.+||||||+...|.      +.+..+++ + +.+...+..       .. .+                   .
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~-~-~~gtT~d~~-------~~-~~-------------------~  494 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLT------HEERAVVN-D-LAGTTRDPV-------DE-IV-------------------E  494 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHh------CccccccC-C-CCCCCcCcc-------ee-EE-------------------E
Confidence            3467889999999999998887      33332222 1 111110000       00 01                   0


Q ss_pred             hCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      ..+.++.|+||||....     .......+......-.++.+++|+|+..+  ......+......-...-+|+||+|..
T Consensus       495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~  574 (712)
T PRK09518        495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM  574 (712)
T ss_pred             ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence            14567889999995421     11222222222223346889999999544  222233333322223455899999975


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       575 ~  575 (712)
T PRK09518        575 D  575 (712)
T ss_pred             C
Confidence            3

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.42  E-value=0.0014  Score=68.65  Aligned_cols=89  Identities=17%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCC-----------ceEeCC----
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGV-----------PVYTAG----   77 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv-----------~v~~~~----   77 (403)
                      +.++++|+|.+|+||||++..++..-+++ |.++++|.++-. +.   ++.......|.           .++...    
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~---~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~   95 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQ---DIIKNARSFGWDLQKLVDEGKLFILDASPDPE   95 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HH---HHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence            46899999999999999999998876665 999999999832 22   22222222222           111111    


Q ss_pred             -----CCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657           78 -----TEVKPSQIAKQGLEEAKKKNVDVVIVDTA  106 (403)
Q Consensus        78 -----~~~~~~~~~~~~l~~~~~~~~D~VIIDtp  106 (403)
                           ........+......+.....+.|+||..
T Consensus        96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl  129 (484)
T TIGR02655        96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV  129 (484)
T ss_pred             cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence                 11233445555556665567899999953

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.42  E-value=0.001  Score=70.09  Aligned_cols=39  Identities=33%  Similarity=0.611  Sum_probs=36.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ..+++|.|.+|+|||+++..++...++.|.+|++++.+-
T Consensus       273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~  311 (509)
T PRK09302        273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE  311 (509)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence            578899999999999999999999999999999999874

>PRK05595 replicative DNA helicase; Provisional

Probab=97.42  E-value=0.0027  Score=65.68  Aligned_cols=145  Identities=21%  Similarity=0.287  Sum_probs=78.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~   89 (403)
                      +..++++.|.+|+||||++.++|..++ ++|++|+++.++.........+  ++...+++...... ....  ...+.++
T Consensus       200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~--~a~~~~v~~~~~~~~~l~~~e~~~~~~~  277 (444)
T PRK05595        200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKL--LCSEANVDMLRLRTGNLEDKDWENIARA  277 (444)
T ss_pred             CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence            346788889999999999999999876 5699999999885433322221  23333444322211 1111  2234444


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---cc--H------H---HHHHHHHHhhhcCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MT--G------Q---EAAALVTTFNIEIG  155 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~~--g------~---~~~~~~~~~~~~~~  155 (403)
                      ...+.  ...+.|-|+++ +..+ .+...+..+.....  .-++|||.   ..  .      +   .+.+.++.+....+
T Consensus       278 ~~~l~--~~~l~i~d~~~-~t~~-~i~~~~r~~~~~~~--~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~  351 (444)
T PRK05595        278 SGPLA--AAKIFIDDTAG-VSVM-EMRSKCRRLKIEHG--IDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEME  351 (444)
T ss_pred             HHHHh--cCCEEEECCCC-CCHH-HHHHHHHHHHHhcC--CCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence            44442  34455555555 3322 22233333322222  22666665   11  0      1   12233455666778


Q ss_pred             eeEEEEccCCC
Q 015657          156 ITGAILTKLDG  166 (403)
Q Consensus       156 i~GvIlNk~D~  166 (403)
                      +..+++..+..
T Consensus       352 i~vi~lsQLnR  362 (444)
T PRK05595        352 CPVIALSQLSR  362 (444)
T ss_pred             CeEEEeeccCc
Confidence            87788877764

>PRK11058 GTPase HflX; Provisional

Probab=97.42  E-value=0.0014  Score=67.46  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=61.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.+++||||+...|.      |.++. +. |... ...+..        ...+..                  ..
T Consensus       199 ~ValVG~~NaGKSSLlN~Lt------~~~~~-v~-~~~~-tTld~~--------~~~i~l------------------~~  243 (426)
T PRK11058        199 TVSLVGYTNAGKSTLFNRIT------EARVY-AA-DQLF-ATLDPT--------LRRIDV------------------AD  243 (426)
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCcee-ec-cCCC-CCcCCc--------eEEEEe------------------CC
Confidence            47899999999999998886      44554 21 1100 000000        000100                  12


Q ss_pred             CCcEEEEeCCCCccc-cHHhHHHHHH-HhhhcCCceEEEEEecccHH--HHH----HHHHHhhhcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQ--EAA----ALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~-d~~l~~el~~-i~~~~~~~~vllVvda~~g~--~~~----~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ...++|+||||.... ...+...... +.....++.+++|+|+....  +..    ..+..+...-...-+|+||+|...
T Consensus       244 ~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~  323 (426)
T PRK11058        244 VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD  323 (426)
T ss_pred             CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence            236899999998532 2232222222 22234568899999995432  211    222222221123448999999753

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.41  E-value=0.0062  Score=62.18  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=32.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D   52 (403)
                      ..+++.|++|+|||+++.+++..+.++  +.+|+.+.++
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~  175 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE  175 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence            468899999999999999999999876  7889888866

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.41  E-value=0.034  Score=60.18  Aligned_cols=91  Identities=25%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-hhHHHHHHhhhccCCceEeCC-CCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-AAIDQLVILGEQVGVPVYTAG-TEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-~~~~~l~~~~~~~gv~v~~~~-~~~~~~~~~~~~l   90 (403)
                      .-+..++|+|+.|+||||++..||+.|--....    ..++... .....+ ..+.  -++++..+ ......+.+++.+
T Consensus        36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~----~~~pCg~C~sCr~i-~~g~--~~DvlEidaAs~~gVd~IRell  108 (709)
T PRK08691         36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ----HGEPCGVCQSCTQI-DAGR--YVDLLEIDAASNTGIDNIREVL  108 (709)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC----CCCCCcccHHHHHH-hccC--ccceEEEeccccCCHHHHHHHH
Confidence            346788999999999999999999887533211    1111110 011111 1111  12222221 1223445555555


Q ss_pred             HHHH----hCCCcEEEEeCCCCcc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~  110 (403)
                      +.+.    ..+|.++|||-+..+.
T Consensus       109 e~a~~~P~~gk~KVIIIDEad~Ls  132 (709)
T PRK08691        109 ENAQYAPTAGKYKVYIIDEVHMLS  132 (709)
T ss_pred             HHHHhhhhhCCcEEEEEECccccC
Confidence            5432    2468899999987664

>COG2403 Predicted GTPase [General function prediction only]

Probab=97.41  E-value=0.0014  Score=64.83  Aligned_cols=131  Identities=27%  Similarity=0.400  Sum_probs=75.6

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEecc-CCChhhH----HHHHHhhhc--------------cCC----c
Q 015657           17 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD-VYRPAAI----DQLVILGEQ--------------VGV----P   72 (403)
Q Consensus        17 iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D-~~rp~~~----~~l~~~~~~--------------~gv----~   72 (403)
                      +|.++|. .|+|||+++..+++.|+.+|++|++|--- +++-.-+    +.+....+.              ..+    .
T Consensus       128 viaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~tg~~  207 (449)
T COG2403         128 VIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIPTGGG  207 (449)
T ss_pred             eEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhccccccc
Confidence            4677777 99999999999999999999999877542 2321111    111111100              011    1


Q ss_pred             eEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhh
Q 015657           73 VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFN  151 (403)
Q Consensus        73 v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~  151 (403)
                      ++.   ..+-..+++++.     +..|+|+.|+.+.-.             -.+.||..++|+|+. .+++.....-.++
T Consensus       208 vlA---Gvdy~~vlke~~-----~~aD~IlwdGgnndf-------------Pfvkpd~~Ivvvda~rpg~ei~~~pGe~~  266 (449)
T COG2403         208 VLA---GVDYGTVLKEGE-----KEADFILWDGGNNDF-------------PFVKPDLHIVVVDALRPGEEIGSFPGELR  266 (449)
T ss_pred             eEe---eeeHHHHHHHHh-----hhccEEEEeCCCCCC-------------CcccCCeeEEEecCCCCchhhccCCCcee
Confidence            111   112223334333     345999999988532             123468889999994 3555443322221


Q ss_pred             hcCCe-eEEEEccCCCCCch
Q 015657          152 IEIGI-TGAILTKLDGDSRG  170 (403)
Q Consensus       152 ~~~~i-~GvIlNk~D~~~~~  170 (403)
                        +.. ..+|+||+|....+
T Consensus       267 --irlAD~VIItkveea~~~  284 (449)
T COG2403         267 --IRLADLVIITKVEEAMAE  284 (449)
T ss_pred             --eeeccEEEEecccccchH
Confidence              222 34899999976544

>PRK05439 pantothenate kinase; Provisional

Probab=97.41  E-value=0.00028  Score=69.35  Aligned_cols=44  Identities=30%  Similarity=0.390  Sum_probs=38.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~r   55 (403)
                      .+.|.+|.|+|.+||||||+|..|+..|.+  .|.+|.+|..|-|-
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            457899999999999999999999998876  37899999999653

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.40  E-value=0.00019  Score=65.71  Aligned_cols=39  Identities=36%  Similarity=0.552  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCc----EEEEeccCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYR   55 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~k----VllVd~D~~r   55 (403)
                      ||.|+|.+||||||+|..|+..|.+.|..    +.++..|.+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            68999999999999999999999998877    6777777554

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=97.40  E-value=0.00041  Score=64.49  Aligned_cols=117  Identities=25%  Similarity=0.365  Sum_probs=61.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|++.|..||||||+...|.      |..+.-....   +.   ...     ........                 ...
T Consensus         2 ~IlllG~tGsGKSs~~N~il------g~~~f~~~~~---~~---~~t-----~~~~~~~~-----------------~~~   47 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSIL------GKEVFKSGSS---AK---SVT-----QECQKYSG-----------------EVD   47 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHH------TSS-SS--TT---TS---S-------SS-EEEEE-----------------EET
T ss_pred             EEEEECCCCCCHHHHHHHHh------cccceeeccc---cC---Ccc-----cccceeee-----------------eec
Confidence            37889999999999998886      6555211100   00   000     00111110                 025


Q ss_pred             CCcEEEEeCCCCccc---cHHhHHHHHHHhhh--cCCceEEEEEecc--cH--HHHHHHH-HHhhhc-CCeeEEEEccCC
Q 015657           97 NVDVVIVDTAGRLQI---DKAMMDELKDVKRV--LNPTEVLLVVDAM--TG--QEAAALV-TTFNIE-IGITGAILTKLD  165 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~---d~~l~~el~~i~~~--~~~~~vllVvda~--~g--~~~~~~~-~~~~~~-~~i~GvIlNk~D  165 (403)
                      +..+.||||||....   +.....++......  ..|+.+++|++..  +.  ..+...+ ..|.+. .+-.-||+|..|
T Consensus        48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d  127 (212)
T PF04548_consen   48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD  127 (212)
T ss_dssp             TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred             ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence            688999999997653   33445555443322  3467889998873  22  2233322 345433 334557888887


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      .-
T Consensus       128 ~~  129 (212)
T PF04548_consen  128 EL  129 (212)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.40  E-value=0.00047  Score=62.49  Aligned_cols=77  Identities=26%  Similarity=0.421  Sum_probs=49.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ..-+++.|++|+|||.+|.+++..+..+|++|.++..+    ...+.+..   .     ...+   .    ..+.+..+ 
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~----~L~~~l~~---~-----~~~~---~----~~~~~~~l-  106 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS----DLLDELKQ---S-----RSDG---S----YEELLKRL-  106 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH----HHHHHHHC---C-----HCCT---T----HCHHHHHH-
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC----ceeccccc---c-----cccc---c----hhhhcCcc-
Confidence            45689999999999999999999999999999998854    33333321   1     0000   0    12334555 


Q ss_pred             hCCCcEEEEeCCCCcccc
Q 015657           95 KKNVDVVIVDTAGRLQID  112 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d  112 (403)
                       .++|++|||=-|....+
T Consensus       107 -~~~dlLilDDlG~~~~~  123 (178)
T PF01695_consen  107 -KRVDLLILDDLGYEPLS  123 (178)
T ss_dssp             -HTSSCEEEETCTSS---
T ss_pred             -ccccEecccccceeeec
Confidence             47899999998876543

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.39  E-value=0.00066  Score=67.45  Aligned_cols=88  Identities=26%  Similarity=0.346  Sum_probs=57.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..+++.|++|+|||+++.++|..+..+|++|+++.++    ...+.+....       +..  ..    .....+..+  
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~----~l~~~l~~~~-------~~~--~~----~~~~~~~~l--  244 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD----ELIEILREIR-------FNN--DK----ELEEVYDLL--  244 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH----HHHHHHHHHH-------hcc--ch----hHHHHHHHh--
Confidence            5689999999999999999999999999999988864    2233332100       000  00    011114444  


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHH
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDV  122 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i  122 (403)
                      ..+|++|||--|...........+-.+
T Consensus       245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~i  271 (329)
T PRK06835        245 INCDLLIIDDLGTEKITEFSKSELFNL  271 (329)
T ss_pred             ccCCEEEEeccCCCCCCHHHHHHHHHH
Confidence            578999999988765544333333333

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=97.39  E-value=0.0021  Score=63.89  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .-|+++|.++|||||+...|.
T Consensus       158 adV~lvG~pnaGKSTLl~~lt  178 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVS  178 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHh
Confidence            457899999999999998886

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.39  E-value=0.095  Score=54.92  Aligned_cols=28  Identities=36%  Similarity=0.526  Sum_probs=23.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .-+..++++|+.|+||||+|..+|..+-
T Consensus        36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         36 RVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456788999999999999999998775

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.38  E-value=0.038  Score=58.10  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=50.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCc---EEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS---CMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~k---VllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~   88 (403)
                      .-+..++++|++|+||||+|..+|..+--....   ..+..|...     ............+++..+. .....+.+++
T Consensus        41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C-----~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~  115 (507)
T PRK06645         41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC-----TNCISFNNHNHPDIIEIDAASKTSVDDIRR  115 (507)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC-----hHHHHHhcCCCCcEEEeeccCCCCHHHHHH
Confidence            345778999999999999999999887532110   000111100     0111111222233333222 2233455555


Q ss_pred             HHHHHH----hCCCcEEEEeCCCCcc
Q 015657           89 GLEEAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        89 ~l~~~~----~~~~D~VIIDtpg~l~  110 (403)
                      .++.+.    ..+|.++|||-+..+.
T Consensus       116 iie~a~~~P~~~~~KVvIIDEa~~Ls  141 (507)
T PRK06645        116 IIESAEYKPLQGKHKIFIIDEVHMLS  141 (507)
T ss_pred             HHHHHHhccccCCcEEEEEEChhhcC
Confidence            555553    2467899999887664

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=97.38  E-value=0.0018  Score=64.97  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=61.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.+++||||+...|.      |..+ ++ .|...+ +.+.      .  ...+..                  .
T Consensus       190 ~~ValvG~~NvGKSSLln~L~------~~~~-~v-~~~~~t-T~d~------~--~~~i~~------------------~  234 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALT------GADV-YA-ADQLFA-TLDP------T--TRRLDL------------------P  234 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHh------CCce-ee-ccCCcc-ccCC------E--EEEEEe------------------C
Confidence            458889999999999998877      4443 22 121110 0000      0  000100                  1


Q ss_pred             CCCcEEEEeCCCCccc-cHHhHHHHHHH-hhhcCCceEEEEEecccHH---HH---HHHHHHhhhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQI-DKAMMDELKDV-KRVLNPTEVLLVVDAMTGQ---EA---AALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~-d~~l~~el~~i-~~~~~~~~vllVvda~~g~---~~---~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .+..+.|+||||.+.. ...+....... .....+|-+++|+|+....   ..   ......+...-...-+|+||+|..
T Consensus       235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~  314 (351)
T TIGR03156       235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL  314 (351)
T ss_pred             CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence            3468999999997432 22222222221 1233568899999985432   11   122222221112345899999975


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       315 ~  315 (351)
T TIGR03156       315 D  315 (351)
T ss_pred             C
Confidence            3

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK06761 hypothetical protein; Provisional

Probab=97.38  E-value=0.0045  Score=60.12  Aligned_cols=42  Identities=31%  Similarity=0.618  Sum_probs=35.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE-EeccCCCh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRP   56 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll-Vd~D~~rp   56 (403)
                      .++|+|+|++||||||++..|+..|...|.+|.+ .+.|..+|
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p   45 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHP   45 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCc
Confidence            4689999999999999999999999888988865 55665443

>PRK08181 transposase; Validated

Probab=97.38  E-value=0.0019  Score=62.37  Aligned_cols=79  Identities=20%  Similarity=0.345  Sum_probs=54.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...++++|++|+|||.++..++..+.++|++|.++.+.    ...+.+... .       .   ...    ..+.+..+ 
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~----~L~~~l~~a-~-------~---~~~----~~~~l~~l-  165 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT----DLVQKLQVA-R-------R---ELQ----LESAIAKL-  165 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH----HHHHHHHHH-H-------h---CCc----HHHHHHHH-
Confidence            35589999999999999999999999999999887753    333333211 0       0   001    12234444 


Q ss_pred             hCCCcEEEEeCCCCccccHH
Q 015657           95 KKNVDVVIVDTAGRLQIDKA  114 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~  114 (403)
                       ..+|++|||=.|....+..
T Consensus       166 -~~~dLLIIDDlg~~~~~~~  184 (269)
T PRK08181        166 -DKFDLLILDDLAYVTKDQA  184 (269)
T ss_pred             -hcCCEEEEeccccccCCHH
Confidence             5799999998887765443

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.38  E-value=0.029  Score=60.27  Aligned_cols=91  Identities=19%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-CCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~~~~~~~~~~l   90 (403)
                      .-+..++++|+.|+||||+|..||+.+--. +.     +..+...  ............++++..+.. ....+.+++.+
T Consensus        35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~-----~~~pCg~--C~sC~~I~~g~hpDviEIDAAs~~~VddIReli  107 (702)
T PRK14960         35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGV-----TSTPCEV--CATCKAVNEGRFIDLIEIDAASRTKVEDTRELL  107 (702)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCC-----CCCCCcc--CHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence            346788999999999999999999887522 11     1111110  001111122223344433221 22344455555


Q ss_pred             HHHH----hCCCcEEEEeCCCCcc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~  110 (403)
                      ..+.    ..+|.++|||-+-.+.
T Consensus       108 ~~~~y~P~~gk~KV~IIDEVh~LS  131 (702)
T PRK14960        108 DNVPYAPTQGRFKVYLIDEVHMLS  131 (702)
T ss_pred             HHHhhhhhcCCcEEEEEechHhcC
Confidence            4432    2468899999888775

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.37  E-value=0.0074  Score=64.34  Aligned_cols=37  Identities=22%  Similarity=0.503  Sum_probs=32.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D   52 (403)
                      ..++|+|..|+|||.++.+++.++.+  .|++|.++.++
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae  353 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE  353 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            34889999999999999999999876  48999999876

>PRK08506 replicative DNA helicase; Provisional

Probab=97.37  E-value=0.003  Score=65.93  Aligned_cols=146  Identities=18%  Similarity=0.271  Sum_probs=82.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHH--HHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPS--QIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~--~~~~~~l   90 (403)
                      +..++++.|.+|+|||+++.++|...++.|++|+++.++.........+  ++...+++..... ......  ..+.+++
T Consensus       191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a~  268 (472)
T PRK08506        191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRM--LSAKTSIPLQNLRTGDLDDDEWERLSDAC  268 (472)
T ss_pred             CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence            3468888999999999999999999988899999999985543333322  2223344332111 112222  2345555


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc---c--H------H---HHHHHHHHhhhcCCe
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T--G------Q---EAAALVTTFNIEIGI  156 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~---~--g------~---~~~~~~~~~~~~~~i  156 (403)
                      ..+.  +..+.|.|+++ +..+ .+...+..+.... +.--++|||..   .  +      +   .+.+.++.+...+++
T Consensus       269 ~~l~--~~~l~I~d~~~-~ti~-~I~~~~r~l~~~~-~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~i  343 (472)
T PRK08506        269 DELS--KKKLFVYDSGY-VNIH-QVRAQLRKLKSQH-PEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDI  343 (472)
T ss_pred             HHHH--cCCeEEECCCC-CCHH-HHHHHHHHHHHhC-CCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            5553  44567777654 3321 2222222222211 12236777761   1  0      1   222334556667777


Q ss_pred             eEEEEccCCC
Q 015657          157 TGAILTKLDG  166 (403)
Q Consensus       157 ~GvIlNk~D~  166 (403)
                      ..+++..+..
T Consensus       344 pVi~lsQLnR  353 (472)
T PRK08506        344 PIIALSQLNR  353 (472)
T ss_pred             cEEEEeecCc
Confidence            7788877654

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.36  E-value=0.0019  Score=67.90  Aligned_cols=95  Identities=16%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhh-------ccCCceEeCCC-------
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGE-------QVGVPVYTAGT-------   78 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~-------~~gv~v~~~~~-------   78 (403)
                      +..+++++|.+|+||||++..+++..+++ |.+|++|.++-......+++..++-       ...+.++....       
T Consensus        30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~~~  109 (509)
T PRK09302         30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEE  109 (509)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccccc
Confidence            45889999999999999999999887777 9999999998544333333322210       00111111110       


Q ss_pred             --CCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Q 015657           79 --EVKPSQIAKQGLEEAKKKNVDVVIVDTAGR  108 (403)
Q Consensus        79 --~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~  108 (403)
                        ..+....+......+...+++.++||+-..
T Consensus       110 ~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~  141 (509)
T PRK09302        110 AGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA  141 (509)
T ss_pred             cccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence              112233344444444456789999998653

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.36  E-value=0.029  Score=56.44  Aligned_cols=31  Identities=35%  Similarity=0.564  Sum_probs=26.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      ..+..++++|++|+||||++..++..+...+
T Consensus        37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~   67 (367)
T PRK14970         37 HLAQALLFCGPRGVGKTTCARILARKINQPG   67 (367)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            4467899999999999999999998876543

>cd04124 RabL2 RabL2 subfamily

Probab=97.36  E-value=0.0018  Score=56.95  Aligned_cols=65  Identities=23%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh---hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~---~~~~i~GvIlNk~D~~  167 (403)
                      ..+++.|+||||.-.... +.   ...  .-..+.+++|+|........   .....+.   ... ..-+|.||+|..
T Consensus        47 ~~~~~~i~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-p~ivv~nK~Dl~  117 (161)
T cd04124          47 KTILVDFWDTAGQERFQT-MH---ASY--YHKAHACILVFDVTRKITYKNLSKWYEELREYRPEI-PCIVVANKIDLD  117 (161)
T ss_pred             EEEEEEEEeCCCchhhhh-hh---HHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC-cEEEEEECccCc
Confidence            457888999999643211 11   111  12458889999986543322   2222222   123 344899999964

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.36  E-value=0.00053  Score=70.50  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=22.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++...|+++|..++||||++..|...+
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~   31 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKC   31 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHh
Confidence            345668999999999999999988644

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.36  E-value=0.0019  Score=69.04  Aligned_cols=65  Identities=23%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      ++.+.||||||.-.    ....+  +......|.+++|+|+..+   +.. ..+.... ..++..-|++||+|...
T Consensus        49 ~~~v~~iDtPGhe~----f~~~~--~~g~~~aD~aILVVDa~~G~~~qT~-ehl~il~~lgi~~iIVVlNK~Dlv~  117 (581)
T TIGR00475        49 DYRLGFIDVPGHEK----FISNA--IAGGGGIDAALLVVDADEGVMTQTG-EHLAVLDLLGIPHTIVVITKADRVN  117 (581)
T ss_pred             CEEEEEEECCCHHH----HHHHH--HhhhccCCEEEEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEEEECCCCCC
Confidence            47889999999532    22211  2223346899999999653   322 2222111 22332458999999754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.35  E-value=0.0018  Score=56.30  Aligned_cols=37  Identities=38%  Similarity=0.659  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      +++++|++||||||++..|+..+     ...+++.|..+...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~   37 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPA   37 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHH
Confidence            47899999999999998888764     34578999877653

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.35  E-value=0.0011  Score=70.95  Aligned_cols=93  Identities=22%  Similarity=0.176  Sum_probs=52.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh--
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG--  171 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~--  171 (403)
                      +++.+.++||||..........+ + ......-.+|-+++|+|+...+..........+.-...-+++||+|...+.+  
T Consensus        39 ~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~  118 (591)
T TIGR00437        39 QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIR  118 (591)
T ss_pred             CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCCh
Confidence            35678999999986542211111 1 1122223568899999997654443333333222233458999999643222  


Q ss_pred             -HHHHHHHHhCCCeEEee
Q 015657          172 -AALSVKEVSGKPIKLVG  188 (403)
Q Consensus       172 -~~~~~~~~~g~pi~fig  188 (403)
                       ....+.+..|.|+..+.
T Consensus       119 ~d~~~L~~~lg~pvv~tS  136 (591)
T TIGR00437       119 IDEEKLEERLGVPVVPTS  136 (591)
T ss_pred             hhHHHHHHHcCCCEEEEE
Confidence             23556677888875443

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK04213 GTP-binding protein; Provisional

Probab=97.35  E-value=0.0044  Score=56.42  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=18.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ..|+++|.+|+||||+...|.
T Consensus        10 ~~i~i~G~~~~GKSsLin~l~   30 (201)
T PRK04213         10 PEIVFVGRSNVGKSTLVRELT   30 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            457888999999999998775

>cd04158 ARD1 ARD1 subfamily

Probab=97.35  E-value=0.0013  Score=58.42  Aligned_cols=67  Identities=22%  Similarity=0.299  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh--cC--CeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI--EI--GITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~--~~--~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||....... .   ...  ....+.+++|+|....+.....   ...+..  ..  .+.-++.||.|...
T Consensus        41 ~~~~i~l~Dt~G~~~~~~~-~---~~~--~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  114 (169)
T cd04158          41 KNLKFTIWDVGGKHKLRPL-W---KHY--YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG  114 (169)
T ss_pred             CCEEEEEEECCCChhcchH-H---HHH--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence            4678999999997532111 1   111  1235889999998654333222   222211  11  23458899999753

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.35  E-value=0.0017  Score=59.73  Aligned_cols=115  Identities=26%  Similarity=0.282  Sum_probs=59.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +.+++++.|.+|+||||+...+...+...|++|+++..-  ..++ .   .+....++++.+............. -...
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT--~~Aa-~---~L~~~~~~~a~Ti~~~l~~~~~~~~-~~~~   89 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT--NKAA-K---ELREKTGIEAQTIHSFLYRIPNGDD-EGRP   89 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS--HHHH-H---HHHHHHTS-EEEHHHHTTEECCEEC-CSSC
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc--HHHH-H---HHHHhhCcchhhHHHHHhcCCcccc-cccc
Confidence            346788999999999999999999999999999887733  2222 2   2333334433322100000000000 0000


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM  138 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~  138 (403)
                      ....++++|||=++.+.  ...+..+....... ...+++|-|..
T Consensus        90 ~~~~~~vliVDEasmv~--~~~~~~ll~~~~~~-~~klilvGD~~  131 (196)
T PF13604_consen   90 ELPKKDVLIVDEASMVD--SRQLARLLRLAKKS-GAKLILVGDPN  131 (196)
T ss_dssp             C-TSTSEEEESSGGG-B--HHHHHHHHHHS-T--T-EEEEEE-TT
T ss_pred             cCCcccEEEEecccccC--HHHHHHHHHHHHhc-CCEEEEECCcc
Confidence            01467999999998764  23333333222221 14578887863

>cd04113 Rab4 Rab4 subfamily

Probab=97.34  E-value=0.0022  Score=55.89  Aligned_cols=82  Identities=21%  Similarity=0.099  Sum_probs=43.8

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||......    .....  ...++.+++|+|............      .+...-...-+|.||+|.... 
T Consensus        48 ~~~l~l~D~~G~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  121 (161)
T cd04113          48 RVKLQIWDTAGQERFRS----VTRSY--YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR  121 (161)
T ss_pred             EEEEEEEECcchHHHHH----hHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence            46889999999643211    11111  224588999999976544333221      111111234578899996432 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~  139 (161)
T cd04113         122 EVTFLEASRFAQENGLLF  139 (161)
T ss_pred             cCCHHHHHHHHHHcCCEE
Confidence               123344445555544

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=97.34  E-value=0.0022  Score=56.52  Aligned_cols=17  Identities=47%  Similarity=0.700  Sum_probs=14.9

Q ss_pred             EEcCCCCcHHHHHHHHH
Q 015657           20 LAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        20 v~G~gGsGKTTla~~LA   36 (403)
                      +.|.+||||||+...|.
T Consensus         1 iiG~~~~GKStll~~l~   17 (176)
T cd01881           1 LVGLPNVGKSTLLNALT   17 (176)
T ss_pred             CCCCCCCcHHHHHHHHh
Confidence            46999999999997776

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00879 Sar1 Sar1 subfamily

Probab=97.34  E-value=0.0013  Score=59.18  Aligned_cols=21  Identities=43%  Similarity=0.566  Sum_probs=17.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ..|+++|++||||||+...|.
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~   40 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLK   40 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            345999999999999997765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK09183 transposase/IS protein; Provisional

Probab=97.34  E-value=0.002  Score=61.82  Aligned_cols=80  Identities=24%  Similarity=0.329  Sum_probs=51.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...++++|++|+|||+++..|+..+..+|++|.++.+.    .....+... ...+          .    +...+... 
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~----~l~~~l~~a-~~~~----------~----~~~~~~~~-  161 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA----DLLLQLSTA-QRQG----------R----YKTTLQRG-  161 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH----HHHHHHHHH-HHCC----------c----HHHHHHHH-
Confidence            34578999999999999999998888899999887643    222222111 0000          0    11122221 


Q ss_pred             hCCCcEEEEeCCCCccccHH
Q 015657           95 KKNVDVVIVDTAGRLQIDKA  114 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~  114 (403)
                      ...+|++|||--+....+..
T Consensus       162 ~~~~dlLiiDdlg~~~~~~~  181 (259)
T PRK09183        162 VMAPRLLIIDEIGYLPFSQE  181 (259)
T ss_pred             hcCCCEEEEcccccCCCChH
Confidence            14789999999987665443

>PRK01184 hypothetical protein; Provisional

Probab=97.33  E-value=0.0028  Score=57.15  Aligned_cols=27  Identities=26%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      .+|+++|++||||||++. +   +++.|+.+
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~---~~~~g~~~   28 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-I---AREMGIPV   28 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-H---HHHcCCcE
Confidence            589999999999999763 3   45557666

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.33  E-value=0.0022  Score=58.78  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      -|+++|.+|+||||+...|.
T Consensus         3 kI~i~G~~g~GKSSLin~L~   22 (197)
T cd04104           3 NIAVTGESGAGKSSFINALR   22 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999998887

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.33  E-value=0.037  Score=58.68  Aligned_cols=29  Identities=38%  Similarity=0.489  Sum_probs=24.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      ..+..++++|+.|+||||+|..||.+|.-
T Consensus        36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34567889999999999999999988863

>cd04110 Rab35 Rab35 subfamily

Probab=97.33  E-value=0.002  Score=58.90  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .-|+++|.+||||||++..+.
T Consensus         7 ~kivvvG~~~vGKTsli~~l~   27 (199)
T cd04110           7 FKLLIIGDSGVGKSSLLLRFA   27 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            448899999999999997775

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.33  E-value=0.079  Score=56.97  Aligned_cols=96  Identities=22%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE-EEEeccCCCh-hhHHHHHHhhhccCCceEeCCC-CCCHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC-MLVAGDVYRP-AAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQ   88 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV-llVd~D~~rp-~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~   88 (403)
                      ++-+..++|+|+.|+||||++..||..|--.+... .-++.++... .....+   ....-.+++..+. ....++.+++
T Consensus        35 gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I---~aG~hpDviEIdAas~~gVDdIRe  111 (700)
T PRK12323         35 QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI---DAGRFVDYIEMDAASNRGVDEMAQ  111 (700)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH---HcCCCCcceEecccccCCHHHHHH
Confidence            34467789999999999999999998885321100 0001111100 011111   1111123333222 1223445555


Q ss_pred             HHHHHH----hCCCcEEEEeCCCCcc
Q 015657           89 GLEEAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        89 ~l~~~~----~~~~D~VIIDtpg~l~  110 (403)
                      .++.+.    ..+|.++|||-.-.++
T Consensus       112 Lie~~~~~P~~gr~KViIIDEah~Ls  137 (700)
T PRK12323        112 LLDKAVYAPTAGRFKVYMIDEVHMLT  137 (700)
T ss_pred             HHHHHHhchhcCCceEEEEEChHhcC
Confidence            555432    3568899999988775

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.33  E-value=0.00035  Score=53.07  Aligned_cols=33  Identities=39%  Similarity=0.633  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      +|+++|.+||||||++..|+..|  .+.++.+++.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~   33 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE   33 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence            47889999999999999999999  5677777764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.32  E-value=0.00097  Score=73.26  Aligned_cols=112  Identities=21%  Similarity=0.331  Sum_probs=60.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .++.+|++.|..++||||+...|.      +.+|.  +.. + +.       .....+  .+..                
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~e-~-~G-------IT~~ig--a~~v----------------  332 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AGE-A-GG-------ITQHIG--AYQV----------------  332 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH------hCCcc--ccc-c-Cc-------eeeecc--EEEE----------------
Confidence            456678999999999999997773      22221  111 0 00       000111  1111                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                       .+.++.+.|+||||...+.. +..     ......|.++||+|+..+  ......+... ...++ .-|++||+|..
T Consensus       333 -~~~~~~ItfiDTPGhe~F~~-m~~-----rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~  402 (787)
T PRK05306        333 -ETNGGKITFLDTPGHEAFTA-MRA-----RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKP  402 (787)
T ss_pred             -EECCEEEEEEECCCCccchh-HHH-----hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECcccc
Confidence             12457899999999754321 111     112234788999998543  2222222221 22334 44899999974

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.32  E-value=0.0014  Score=59.16  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh-hh---cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF-NI---EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~-~~---~~~i~GvIlNk~D~~~  168 (403)
                      +++.+.|.|+||...... +   ....  ...++.+++|+|+.........   +..+ ..   .-.+.-+|.||+|...
T Consensus        59 ~~~~~~i~D~~Gq~~~~~-~---~~~~--~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~  132 (181)
T PLN00223         59 KNISFTVWDVGGQDKIRP-L---WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
T ss_pred             CCEEEEEEECCCCHHHHH-H---HHHH--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence            467899999999632211 1   0111  2245889999999654333222   2222 11   1123558899999654


Q ss_pred             chhHHHHHHHHhCC
Q 015657          169 RGGAALSVKEVSGK  182 (403)
Q Consensus       169 ~~~~~~~~~~~~g~  182 (403)
                      ... ...+.+.++.
T Consensus       133 ~~~-~~~~~~~l~l  145 (181)
T PLN00223        133 AMN-AAEITDKLGL  145 (181)
T ss_pred             CCC-HHHHHHHhCc
Confidence            332 3444555554

>cd01863 Rab18 Rab18 subfamily

Probab=97.32  E-value=0.0021  Score=55.93  Aligned_cols=83  Identities=20%  Similarity=0.217  Sum_probs=43.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCC-eeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIG-ITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~-i~GvIlNk~D~~~~  169 (403)
                      .+++.|+||||.....    .......  -.++.+++|+|............      .+..... ..-+|.||.|....
T Consensus        48 ~~~~~l~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~  121 (161)
T cd01863          48 KVKLAIWDTAGQERFR----TLTSSYY--RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR  121 (161)
T ss_pred             EEEEEEEECCCchhhh----hhhHHHh--CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence            4789999999963221    1111111  23588899999865543322221      2211112 23488899997522


Q ss_pred             h---hHHHHHHHHhCCCeE
Q 015657          170 G---GAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ~---~~~~~~~~~~g~pi~  185 (403)
                      .   ..........+.|+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~  140 (161)
T cd01863         122 EVTREEGLKFARKHNMLFI  140 (161)
T ss_pred             ccCHHHHHHHHHHcCCEEE
Confidence            2   233344445566653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.32  E-value=0.0011  Score=65.40  Aligned_cols=92  Identities=18%  Similarity=0.231  Sum_probs=55.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhhHHHHHHhhhccCCc-------eEeCCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP-------VYTAGTE   79 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~-------v~~~~~~   79 (403)
                      ..+++-++|.+|+|||+++..++...+.      .|.+|++||+.- ++|.-+.+.   .+..+++       ++.... 
T Consensus        95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~---a~~~g~d~~~~l~~i~~~~~-  170 (313)
T TIGR02238        95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI---AERFGVDPDAVLDNILYARA-  170 (313)
T ss_pred             CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH---HHHcCCChHHhcCcEEEecC-
Confidence            3488899999999999999999875542      356999999874 345443332   3333322       111111 


Q ss_pred             CCH---HHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657           80 VKP---SQIAKQGLEEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        80 ~~~---~~~~~~~l~~~~~~~~D~VIIDtpg~l  109 (403)
                      ...   .+.+......+...++++||||+-..+
T Consensus       171 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal  203 (313)
T TIGR02238       171 YTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL  203 (313)
T ss_pred             CCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence            111   122233333344457999999987654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd04151 Arl1 Arl1 subfamily

Probab=97.31  E-value=0.0013  Score=57.47  Aligned_cols=66  Identities=17%  Similarity=0.156  Sum_probs=37.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHh-hh---cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF-NI---EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~-~~---~~~i~GvIlNk~D~~  167 (403)
                      .+..+.|+||||........    ..  ....++.+++|+|+......   ......+ ..   .-.+.-+|+||+|..
T Consensus        41 ~~~~~~i~Dt~G~~~~~~~~----~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~  113 (158)
T cd04151          41 KNLKFQVWDLGGQTSIRPYW----RC--YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP  113 (158)
T ss_pred             CCEEEEEEECCCCHHHHHHH----HH--HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence            35789999999975322110    11  11245889999998654322   2222211 11   123455899999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04157 Arl6 Arl6 subfamily

Probab=97.31  E-value=0.0017  Score=56.44  Aligned_cols=67  Identities=12%  Similarity=0.086  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHh------hhcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTF------NIEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~------~~~~~i~GvIlNk~D~  166 (403)
                      .++.+.|+||||...... +.   ...  ...++.+++|+|+.......   .....+      ...-...-+|+||+|.
T Consensus        43 ~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl  116 (162)
T cd04157          43 GNLSFTAFDMSGQGKYRG-LW---EHY--YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDL  116 (162)
T ss_pred             CCEEEEEEECCCCHhhHH-HH---HHH--HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccc
Confidence            467889999999753211 11   111  12458899999996543221   112211      1111234589999997


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       117 ~~  118 (162)
T cd04157         117 PD  118 (162)
T ss_pred             cC
Confidence            53

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=97.31  E-value=0.0022  Score=65.76  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=36.6

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      +.+.|+||||...    +..++  +......+.+++|+|+..+   ......+.... ......-+|+||+|...
T Consensus        85 ~~i~liDtPG~~~----f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~  153 (411)
T PRK04000         85 RRVSFVDAPGHET----LMATM--LSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS  153 (411)
T ss_pred             cEEEEEECCCHHH----HHHHH--HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence            6789999999643    22221  2222235889999999632   22222222221 22333457889999754

>cd01865 Rab3 Rab3 subfamily

Probab=97.30  E-value=0.0025  Score=56.10  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=43.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||....     ..+. ....-..+.+++|.|..........   ...+..   .....-+|.||+|.... 
T Consensus        49 ~~~~~l~Dt~g~~~~-----~~~~-~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~  122 (165)
T cd01865          49 RVKLQIWDTAGQERY-----RTIT-TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER  122 (165)
T ss_pred             EEEEEEEECCChHHH-----HHHH-HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence            467899999995421     1111 1112245788999998544333222   122211   12234589999996432 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+..+.+..+.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~  140 (165)
T cd01865         123 VVSSERGRQLADQLGFEF  140 (165)
T ss_pred             ccCHHHHHHHHHHcCCEE
Confidence               133344555566655

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.30  E-value=0.00093  Score=57.27  Aligned_cols=65  Identities=18%  Similarity=0.111  Sum_probs=35.7

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh-----hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN-----IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~-----~~~~i~GvIlNk~D~~~  168 (403)
                      ...+.++|+||......    .....  ...++.+++|+|+........   ....+.     ... ..-+|+||.|...
T Consensus        43 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~  115 (159)
T cd04159          43 NVTLKVWDLGGQPRFRS----MWERY--CRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGI-PLLVLGNKNDLPG  115 (159)
T ss_pred             CEEEEEEECCCCHhHHH----HHHHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCC-CEEEEEeCccccC
Confidence            46789999999643211    11111  123578899999865433222   122211     122 2347899999654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=97.30  E-value=0.007  Score=62.79  Aligned_cols=115  Identities=21%  Similarity=0.279  Sum_probs=60.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.+|+||||+...|.      +.++.++..-   |...           .+++..               .+..
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~~---~gtT-----------~d~~~~---------------~i~~  260 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALL------GEERAIVTDI---AGTT-----------RDVIEE---------------HINL  260 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHh------CCCCcccCCC---CCcc-----------cccEEE---------------EEEE
Confidence            347889999999999998887      4333322211   1110           000000               0001


Q ss_pred             CCCcEEEEeCCCCccccHHhHHH--H-HHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDE--L-KDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~e--l-~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||...... ....  + ..+...-.+|-+++|+|+....  +....... .... ..-+|+||+|...
T Consensus       261 ~g~~i~l~DT~G~~~~~~-~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-~~~~-piiiV~NK~DL~~  335 (449)
T PRK05291        261 DGIPLRLIDTAGIRETDD-EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-LKDK-PVIVVLNKADLTG  335 (449)
T ss_pred             CCeEEEEEeCCCCCCCcc-HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-cCCC-CcEEEEEhhhccc
Confidence            457799999999753221 1111  0 1122233468899999985432  11222222 1222 3448999999753

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=97.30  E-value=0.0019  Score=56.96  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=43.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhh---cCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNI---EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~---~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|.||||...... +   ...  ..-..+.+++|.|+...+......   ..+..   .-...-+|.||.|.... 
T Consensus        51 ~~~l~l~D~~g~~~~~~-~---~~~--~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~  124 (167)
T cd01867          51 KIKLQIWDTAGQERFRT-I---TTA--YYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR  124 (167)
T ss_pred             EEEEEEEeCCchHHHHH-H---HHH--HhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            46789999999643211 1   111  122458889999986554433222   11211   11233488899996522 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.|+
T Consensus       125 ~~~~~~~~~~~~~~~~~~  142 (167)
T cd01867         125 VVSKEEGEALADEYGIKF  142 (167)
T ss_pred             CCCHHHHHHHHHHcCCEE
Confidence               122334444556665

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.30  E-value=0.00063  Score=57.14  Aligned_cols=69  Identities=32%  Similarity=0.428  Sum_probs=46.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |++.|++|+||||++..+|..+   +..+.-+++....          ..          ........+...+..+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~----------~~----------~~~~~~~~i~~~~~~~~~~~   57 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI----------SS----------YAGDSEQKIRDFFKKAKKSA   57 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH----------TS----------STTHHHHHHHHHHHHHHHTS
T ss_pred             CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc----------cc----------cccccccccccccccccccc
Confidence            5789999999999999999887   5677777765110          00          12234455666666665444


Q ss_pred             -CcEEEEeCCCCc
Q 015657           98 -VDVVIVDTAGRL  109 (403)
Q Consensus        98 -~D~VIIDtpg~l  109 (403)
                       ..+++||-.-.+
T Consensus        58 ~~~vl~iDe~d~l   70 (132)
T PF00004_consen   58 KPCVLFIDEIDKL   70 (132)
T ss_dssp             TSEEEEEETGGGT
T ss_pred             cceeeeeccchhc
Confidence             688999865443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK12377 putative replication protein; Provisional

Probab=97.29  E-value=0.002  Score=61.47  Aligned_cols=77  Identities=26%  Similarity=0.363  Sum_probs=52.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...++++|++|+|||+++.+++..+.+.|++|.++...    .....+...-        ...      ....+.+..+ 
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~----~l~~~l~~~~--------~~~------~~~~~~l~~l-  161 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHESY--------DNG------QSGEKFLQEL-  161 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH----HHHHHHHHHH--------hcc------chHHHHHHHh-
Confidence            35689999999999999999999999999999887754    2333332110        000      0112334555 


Q ss_pred             hCCCcEEEEeCCCCccc
Q 015657           95 KKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~  111 (403)
                       ..+|++|||=-|....
T Consensus       162 -~~~dLLiIDDlg~~~~  177 (248)
T PRK12377        162 -CKVDLLVLDEIGIQRE  177 (248)
T ss_pred             -cCCCEEEEcCCCCCCC
Confidence             5899999998876643

>PRK05748 replicative DNA helicase; Provisional

Probab=97.29  E-value=0.0052  Score=63.69  Aligned_cols=117  Identities=12%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC-CCCCCHHH--HHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQ--IAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~-~~~~~~~~--~~~~~   89 (403)
                      +..+++|.|.+|+||||++.++|...+. .|++|+++.++.........+.  +...+++.... .......+  .+..+
T Consensus       202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l--~~~~~v~~~~i~~~~l~~~e~~~~~~a  279 (448)
T PRK05748        202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRML--CAEGNIDAQRLRTGQLTDDDWPKLTIA  279 (448)
T ss_pred             CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH--HHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence            4478899999999999999999999874 5999999998865444333321  22223332211 11122222  34555


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      +..+.  +..+.|-|+|+ +..+ .+...+..+.... +..-++|||.
T Consensus       280 ~~~l~--~~~~~i~d~~~-~ti~-~i~~~~r~~~~~~-~~~~~vvIDy  322 (448)
T PRK05748        280 MGSLS--DAPIYIDDTPG-IKVT-EIRARCRRLAQEH-GGLGLILIDY  322 (448)
T ss_pred             HHHHh--cCCEEEECCCC-CCHH-HHHHHHHHHHHhc-CCCCEEEEcc
Confidence            56553  45566656665 3322 2333333333322 1223677776

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.29  E-value=0.027  Score=56.69  Aligned_cols=28  Identities=43%  Similarity=0.555  Sum_probs=24.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .-+..++++|++|+||||++..+|..+-
T Consensus        36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         36 RIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            3467789999999999999999998775

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.29  E-value=0.0014  Score=64.83  Aligned_cols=46  Identities=22%  Similarity=0.361  Sum_probs=36.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC-CChhhH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAI   59 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~-~rp~~~   59 (403)
                      ...++.|+|++|+|||+++..++...+..      +.+|++||++- +++..+
T Consensus       101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl  153 (317)
T PRK04301        101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERI  153 (317)
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHH
Confidence            35888999999999999999999876542      34899999985 344433

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=97.29  E-value=0.0014  Score=57.06  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||++..|.
T Consensus         3 i~~vG~~~vGKTsli~~l~   21 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYC   21 (168)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7889999999999998776

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.29  E-value=0.0012  Score=56.40  Aligned_cols=19  Identities=42%  Similarity=0.683  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...|.
T Consensus         3 v~liG~~~vGKSsL~~~l~   21 (142)
T TIGR02528         3 IMFIGSVGCGKTTLTQALQ   21 (142)
T ss_pred             EEEECCCCCCHHHHHHHHc
Confidence            7899999999999997775

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.29  E-value=0.0021  Score=56.11  Aligned_cols=67  Identities=19%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhc--CCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE--IGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~--~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||.... ..+..   .  ....++.+++|+|..........   ...+...  -.+.-+|.||.|...
T Consensus        50 ~~~~l~i~Dt~G~~~~-~~~~~---~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  121 (164)
T cd04101          50 NTVELFIFDSAGQELY-SDMVS---N--YWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD  121 (164)
T ss_pred             CEEEEEEEECCCHHHH-HHHHH---H--HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence            4578999999995322 11111   1  12346888999998655333222   2222211  123458899999743

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.28  E-value=0.0046  Score=53.45  Aligned_cols=19  Identities=37%  Similarity=0.567  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+|+||||+...|+
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            6889999999999998887

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.28  E-value=0.03  Score=60.42  Aligned_cols=28  Identities=39%  Similarity=0.491  Sum_probs=24.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      -+..++|+|+.|+||||++..||..|--
T Consensus        37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994         37 LHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            4566899999999999999999988764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.28  E-value=0.001  Score=71.85  Aligned_cols=46  Identities=28%  Similarity=0.551  Sum_probs=40.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      ..+|.+|+++|.+||||||++..|+..|...|..+.+++.|..|..
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~  502 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHG  502 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhc
Confidence            3468999999999999999999999999888999999999966643

>cd04112 Rab26 Rab26 subfamily

Probab=97.27  E-value=0.0018  Score=58.68  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHH---hhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTT---FNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~---~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.....    ......  ...++.+++|+|.....+.   ......   +...-.+.-+|.||+|.... 
T Consensus        49 ~~~~~i~Dt~G~~~~~----~~~~~~--~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~  122 (191)
T cd04112          49 KVKLQIWDTAGQERFR----SVTHAY--YRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER  122 (191)
T ss_pred             EEEEEEEeCCCcHHHH----HhhHHH--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence            4678999999963211    111111  1235788999998654332   222222   22111234488899997421 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+..+....+.|+
T Consensus       123 ~~~~~~~~~l~~~~~~~~  140 (191)
T cd04112         123 VVKREDGERLAKEYGVPF  140 (191)
T ss_pred             ccCHHHHHHHHHHcCCeE
Confidence               123344445556555

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain

Probab=97.27  E-value=0.026  Score=53.34  Aligned_cols=162  Identities=19%  Similarity=0.232  Sum_probs=98.3

Q ss_pred             EEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHH-----------------------------
Q 015657           17 VILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQL-----------------------------   62 (403)
Q Consensus        17 iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l-----------------------------   62 (403)
                      .|+++|-  +|.||=.+++.|+..|..+|++|..+..|||-   |+...+.                             
T Consensus         2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l   81 (255)
T cd03113           2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNL   81 (255)
T ss_pred             EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCC
Confidence            4677765  99999999999999999999999999999873   2221100                             


Q ss_pred             ------------------HHhhhccCCceEeCCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCCccc--cHHhHHHHHH
Q 015657           63 ------------------VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK-KKNVDVVIVDTAGRLQI--DKAMMDELKD  121 (403)
Q Consensus        63 ------------------~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~-~~~~D~VIIDtpg~l~~--d~~l~~el~~  121 (403)
                                        .+.++..|-.+...+-   -.+.+++.+..+. ..++|++|++-.|...+  ....++.+.+
T Consensus        82 ~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPH---it~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq  158 (255)
T cd03113          82 SRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPH---ITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQ  158 (255)
T ss_pred             cCccCcChHHHHHHHHHHhhccCccCceEEECcC---ccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHH
Confidence                              0111111111111110   1122333344432 36899999998887764  3456777777


Q ss_pred             HhhhcCCceEEEEE-------ec------ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          122 VKRVLNPTEVLLVV-------DA------MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       122 i~~~~~~~~vllVv-------da------~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                      +...+....++++-       .+      ...|..+..++.+  .+.+.+||+|--+ .........+...+++|+
T Consensus       159 ~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~--GIqPDgIVcRse~-pL~e~~keKIAlFcnVpv  231 (255)
T cd03113         159 MKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSI--GIQPDILVCRSEK-PLPPEIREKIALFCDVPP  231 (255)
T ss_pred             HHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhC--CCCCCEEEEeCCC-CCchHHHHHHHHhcCCCH
Confidence            77777655554332       21      1225555555543  6778899999732 223444555667788887

The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.00024  Score=65.17  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=34.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..|+++|.|||||||+|.+||..|.+++++|..+..|
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd   38 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD   38 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence            4688999999999999999999999999999888776

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.26  E-value=0.033  Score=59.56  Aligned_cols=94  Identities=20%  Similarity=0.186  Sum_probs=50.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      .-+..++|+|+.|+||||++..||..+-- .+...  -.|... + ....+.. ......+++..+. .....+.+++..
T Consensus        33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--~pCg~C-~-~C~~i~~-~~~~~~dvieidaas~~gvd~iRel~  107 (584)
T PRK14952         33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA--TPCGVC-E-SCVALAP-NGPGSIDVVELDAASHGGVDDTRELR  107 (584)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC--Cccccc-H-HHHHhhc-ccCCCceEEEeccccccCHHHHHHHH
Confidence            45677899999999999999999987752 11110  011100 0 1111110 0011233433322 222345455444


Q ss_pred             HHHH----hCCCcEEEEeCCCCccc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~~  111 (403)
                      +.+.    ..+|.++|||-+..+..
T Consensus       108 ~~~~~~P~~~~~KVvIIDEah~Lt~  132 (584)
T PRK14952        108 DRAFYAPAQSRYRIFIVDEAHMVTT  132 (584)
T ss_pred             HHHHhhhhcCCceEEEEECCCcCCH
Confidence            4332    25788999999887753

>cd01866 Rab2 Rab2 subfamily

Probab=97.25  E-value=0.0039  Score=55.11  Aligned_cols=65  Identities=20%  Similarity=0.098  Sum_probs=35.6

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhh---cCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNI---EIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~---~~~i~GvIlNk~D~~  167 (403)
                      ...+.|+||||....    ........  -.++.+++|+|+..........   .....   .-...-+|.||+|..
T Consensus        52 ~~~~~i~Dt~G~~~~----~~~~~~~~--~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~  122 (168)
T cd01866          52 QIKLQIWDTAGQESF----RSITRSYY--RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE  122 (168)
T ss_pred             EEEEEEEECCCcHHH----HHHHHHHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            357899999995321    11111111  2457899999986543333222   11211   112245888999965

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.25  E-value=0.0022  Score=56.79  Aligned_cols=66  Identities=12%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhh---hcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---IEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~---~~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+|+||...... +.   ..  ..-..+.+++|+|+......   ...+..+.   ...+ .-+|.||.|...
T Consensus        42 ~~~~l~i~Dt~G~~~~~~-~~---~~--~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~  113 (164)
T cd04162          42 QDAIMELLEIGGSQNLRK-YW---KR--YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPA  113 (164)
T ss_pred             CCeEEEEEECCCCcchhH-HH---HH--HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcC
Confidence            467899999999754321 11   11  12235889999998654322   22222221   2222 348999999653

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]

Probab=97.25  E-value=0.001  Score=72.57  Aligned_cols=55  Identities=31%  Similarity=0.507  Sum_probs=41.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceE
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY   74 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~   74 (403)
                      ..+|.|.||+||||+.+.|.+.|...|++|++..   |...+++.+..--...++.+.
T Consensus       687 y~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLts---yThsAVDNILiKL~~~~i~~l  741 (1100)
T KOG1805|consen  687 YALILGMPGTGKTTTISLLIKILVALGKKVLLTS---YTHSAVDNILIKLKGFGIYIL  741 (1100)
T ss_pred             hheeecCCCCCchhhHHHHHHHHHHcCCeEEEEe---hhhHHHHHHHHHHhccCccee
Confidence            3567899999999999999999999999998776   455566665444444455544

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.25  E-value=0.0015  Score=58.76  Aligned_cols=84  Identities=20%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      +++|+|.+|||||++|.+++..   .|.++++++... +....-+....+.......+.+.   ..+.+ +.+.+...  
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~---E~~~~-l~~~l~~~--   71 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI---ETPRD-LVSALKEL--   71 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe---ecHHH-HHHHHHhc--
Confidence            3688999999999999999865   577888886542 21222122222222222222222   11222 23333333  


Q ss_pred             CCCcEEEEeCCCCc
Q 015657           96 KNVDVVIVDTAGRL  109 (403)
Q Consensus        96 ~~~D~VIIDtpg~l  109 (403)
                      ...++|+|||-..+
T Consensus        72 ~~~~~VLIDclt~~   85 (169)
T cd00544          72 DPGDVVLIDCLTLW   85 (169)
T ss_pred             CCCCEEEEEcHhHH
Confidence            25789999996654

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.25  E-value=0.0045  Score=67.82  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.++|||||+...|.      |.+..+++--   |+..           .......               ..
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~~---pGvT-----------~d~~~~~---------------~~  319 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRIL------GRREAVVEDT---PGVT-----------RDRVSYD---------------AE  319 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHh------CCCceeecCC---CCee-----------EEEEEEE---------------EE
Confidence            3568999999999999998887      4444333311   1110           0000000               01


Q ss_pred             hCCCcEEEEeCCCCccccH----HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDK----AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~----~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      +.+..+.++||||......    .+.....  ...-.++.+++|+|+..+  ..-...+..+...-...-+|+||+|...
T Consensus       320 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~--~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~  397 (712)
T PRK09518        320 WAGTDFKLVDTGGWEADVEGIDSAIASQAQ--IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA  397 (712)
T ss_pred             ECCEEEEEEeCCCcCCCCccHHHHHHHHHH--HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence            2467899999999653211    1222111  112246899999999543  1111223333333334558999999754

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.25  E-value=0.0016  Score=58.61  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      +++|+|.+||||||+|..|+..+   +.++.+++. +++..........+....+-.+.....+.+    +.+.+... .
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~----l~~~i~~~-~   74 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLD----LAELLRAD-A   74 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEeccccc----HHHHHHhh-c
Confidence            68999999999999999998654   445655554 344433323332332222323333222222    11222221 1


Q ss_pred             CCCcEEEEeCCCCc
Q 015657           96 KNVDVVIVDTAGRL  109 (403)
Q Consensus        96 ~~~D~VIIDtpg~l  109 (403)
                      ...++|+|||-..+
T Consensus        75 ~~~~~VlID~Lt~~   88 (170)
T PRK05800         75 APGRCVLVDCLTTW   88 (170)
T ss_pred             CCCCEEEehhHHHH
Confidence            34667888886544

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.25  E-value=0.00039  Score=65.18  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=34.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR   55 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~r   55 (403)
                      +|.|+|.+||||||++..|+..|..  .+.+|.+|..|-+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            5789999999999999999999976  56789999999764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=97.24  E-value=0.004  Score=62.06  Aligned_cols=116  Identities=19%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .-|+++|.++|||||+...|..      .++. |..-++.        ++....+  ++..                  .
T Consensus       159 adVglVG~PNaGKSTLln~ls~------a~~~-va~ypfT--------T~~p~~G--~v~~------------------~  203 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSA------AKPK-IADYPFT--------TLHPNLG--VVRV------------------D  203 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHc------CCCc-cCCCCCc--------eeCceEE--EEEe------------------C
Confidence            3478999999999999988762      2332 2111111        1111111  1111                  1


Q ss_pred             CCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHH---HHhhhc--CCeeEEEEccC
Q 015657           96 KNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALV---TTFNIE--IGITGAILTKL  164 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~---~~~~~~--~~i~GvIlNk~  164 (403)
                      ....++|+|+||.+.-.   ..+...  -+..+-.++.+++|+|+...   ++.....   ..+...  -...-+|+||+
T Consensus       204 ~~~~~~i~D~PGli~ga~~~~gLg~~--flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKi  281 (335)
T PRK12299        204 DYKSFVIADIPGLIEGASEGAGLGHR--FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKI  281 (335)
T ss_pred             CCcEEEEEeCCCccCCCCccccHHHH--HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECc
Confidence            34579999999986421   112111  11112235778999998532   2222222   223221  13455899999


Q ss_pred             CCCC
Q 015657          165 DGDS  168 (403)
Q Consensus       165 D~~~  168 (403)
                      |...
T Consensus       282 DL~~  285 (335)
T PRK12299        282 DLLD  285 (335)
T ss_pred             ccCC
Confidence            9653

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.24  E-value=0.014  Score=62.31  Aligned_cols=91  Identities=15%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh-hHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~-~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      ..+..++++|+.|+||||+|..+|.+|--.+...    .++...- ....+   ......+++..+. .....+.+++.+
T Consensus        36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~----~~~Cg~C~sCr~i---~~~~h~DiieIdaas~igVd~IReIi  108 (605)
T PRK05896         36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKD----GDCCNSCSVCESI---NTNQSVDIVELDAASNNGVDEIRNII  108 (605)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCC----CCCCcccHHHHHH---HcCCCCceEEeccccccCHHHHHHHH
Confidence            4467789999999999999999999986443221    1121111 11111   1111223332221 122344445444


Q ss_pred             HHHH----hCCCcEEEEeCCCCcc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~  110 (403)
                      ..+.    ..++.++|||-+..+.
T Consensus       109 ~~~~~~P~~~~~KVIIIDEad~Lt  132 (605)
T PRK05896        109 DNINYLPTTFKYKVYIIDEAHMLS  132 (605)
T ss_pred             HHHHhchhhCCcEEEEEechHhCC
Confidence            4332    1356799999887764

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.24  E-value=0.00046  Score=69.71  Aligned_cols=40  Identities=28%  Similarity=0.306  Sum_probs=36.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .|.+|+|+|..||||||++.+|...|..+ ++|.++..+..
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~   43 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHGCH   43 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence            57899999999999999999999999999 99999986543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=97.24  E-value=0.0024  Score=66.02  Aligned_cols=87  Identities=17%  Similarity=0.111  Sum_probs=43.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHH-HH-HHHhhhcCCceEEEEEecccHHHHHH-HHHHhhhcCCeeEEEEccCCCCCchhH
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMD-EL-KDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDSRGGA  172 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~-el-~~i~~~~~~~~vllVvda~~g~~~~~-~~~~~~~~~~i~GvIlNk~D~~~~~~~  172 (403)
                      +++.+.|+||||........-. .+ ......-.++.+++|+|+....+... ........-...-+|+||+|....  .
T Consensus       249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~--~  326 (442)
T TIGR00450       249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN--S  326 (442)
T ss_pred             CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc--c
Confidence            4567899999997543211100 00 11122234688999999854321111 222222111233489999997533  1


Q ss_pred             HHHHHHHhCCCe
Q 015657          173 ALSVKEVSGKPI  184 (403)
Q Consensus       173 ~~~~~~~~g~pi  184 (403)
                      ...+....+.|+
T Consensus       327 ~~~~~~~~~~~~  338 (442)
T TIGR00450       327 LEFFVSSKVLNS  338 (442)
T ss_pred             hhhhhhhcCCce
Confidence            222334445554

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.24  E-value=0.0014  Score=58.73  Aligned_cols=66  Identities=20%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHh-hh---cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTF-NI---EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~-~~---~~~i~GvIlNk~D~~  167 (403)
                      +.+.+.|+||||...... +   ....  ...++.+++|+|.+....   +......+ ..   .-.+..||.||.|..
T Consensus        55 ~~~~l~l~D~~G~~~~~~-~---~~~~--~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~  127 (175)
T smart00177       55 KNISFTVWDVGGQDKIRP-L---WRHY--YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP  127 (175)
T ss_pred             CCEEEEEEECCCChhhHH-H---HHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence            457899999999743211 1   1111  224588999999865432   22222222 11   112455899999964

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.23  E-value=0.0013  Score=70.31  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             cEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           99 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        99 D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .+.|+||||...+....     . ......|.+++|+|+..+  ......+.... ..++ .-+++||+|..
T Consensus       136 ~i~~iDTPGhe~F~~~r-----~-rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~  200 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMR-----A-RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKP  200 (587)
T ss_pred             EEEEEECCCCcchhhHH-----H-hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccc
Confidence            78999999975432111     1 112235788999998543  22222222221 2333 45889999964

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.23  E-value=0.066  Score=57.31  Aligned_cols=28  Identities=36%  Similarity=0.529  Sum_probs=24.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .-+..++|+|+.|+||||++..||.++-
T Consensus        36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~   63 (576)
T PRK14965         36 RVAHAFLFTGARGVGKTSTARILAKALN   63 (576)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            3467789999999999999999998875

>cd04114 Rab30 Rab30 subfamily

Probab=97.22  E-value=0.0017  Score=57.02  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ...++++|.+||||||+...|.
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~   28 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFT   28 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHH
Confidence            3668999999999999998876

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.22  E-value=0.13  Score=54.79  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=24.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .-+..++++|+.|+||||++..||..+-
T Consensus        36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~   63 (563)
T PRK06647         36 KIANAYIFSGPRGVGKTSSARAFARCLN   63 (563)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            4567889999999999999999998875

>PRK06749 replicative DNA helicase; Provisional

Probab=97.22  E-value=0.003  Score=65.08  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC---CCCCH--HHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG---TEVKP--SQIAKQ   88 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~---~~~~~--~~~~~~   88 (403)
                      +...++|.|.||.|||+++.++|...+++|++|+++.++.........+  .+...+++.....   .....  ...+.+
T Consensus       185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~--ls~~~~i~~~~l~~~~~~l~~~e~~~~~~  262 (428)
T PRK06749        185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRM--ASCVGEVSGGRLKNPKHRFAMEDWEKVSK  262 (428)
T ss_pred             CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHH--HHhccCCCHHHHhcCcccCCHHHHHHHHH
Confidence            4467888899999999999999999998899999999886544433332  2223333322111   11222  233556


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      ++..+  .+..+-|.|+++. ..+ .+...+..+........-++|||.
T Consensus       263 a~~~l--~~~~i~i~d~~~~-t~~-~I~~~~r~~~~~~~~~~~lvvIDy  307 (428)
T PRK06749        263 AFAEI--GELPLEIYDNAGV-TVQ-DIWMQTRKLKRKHGDKKILIIVDY  307 (428)
T ss_pred             HHHHH--hcCCEEEECCCCC-CHH-HHHHHHHHHHHhcCCCCcEEEEeC
Confidence            66665  3567788888774 222 233333333332221233777786

>cd04142 RRP22 RRP22 subfamily

Probab=97.22  E-value=0.0019  Score=59.36  Aligned_cols=71  Identities=14%  Similarity=0.052  Sum_probs=38.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEecccHHHHHHHH---HHhh------hcCCeeEEEEccCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTGQEAAALV---TTFN------IEIGITGAILTKLD  165 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~------~~~~i~GvIlNk~D  165 (403)
                      .+.+.|+||||..........+..  .......++.+++|+|.....+.....   ..+.      ..-.+.-+|.||+|
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D  127 (198)
T cd04142          48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD  127 (198)
T ss_pred             EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence            478899999995432111111110  111223568899999997654333221   1111      11123458899999


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      ..
T Consensus       128 l~  129 (198)
T cd04142         128 QQ  129 (198)
T ss_pred             cc
Confidence            74

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=97.22  E-value=0.0025  Score=55.48  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=44.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+++.|+||||.....     .+... ..-..+.+++|.|....+.....   ...+.   ...+ .-+|.||+|....
T Consensus        49 ~~~~~~i~D~~G~~~~~-----~~~~~-~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~  121 (162)
T cd04106          49 EDVRLMLWDTAGQEEFD-----AITKA-YYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQ  121 (162)
T ss_pred             CEEEEEEeeCCchHHHH-----HhHHH-HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccc
Confidence            35789999999963221     11111 11245788899888654433222   11121   2333 3488899996432


Q ss_pred             ----hhHHHHHHHHhCCCeE
Q 015657          170 ----GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi~  185 (403)
                          ...+..+.+..+.|+.
T Consensus       122 ~~v~~~~~~~~~~~~~~~~~  141 (162)
T cd04106         122 AVITNEEAEALAKRLQLPLF  141 (162)
T ss_pred             cCCCHHHHHHHHHHcCCeEE
Confidence                1233445556677663

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PTZ00035 Rad51 protein; Provisional

Probab=97.22  E-value=0.002  Score=64.27  Aligned_cols=93  Identities=22%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhhHHHHHHhhhccCC---------ceEeCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGEQVGV---------PVYTAG   77 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv---------~v~~~~   77 (403)
                      ...++.++|++|+||||++..|+.....      .+.+|++||... ++|.-+.++   ....++         .+....
T Consensus       117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~i---a~~~g~~~~~~l~nI~~~~~~  193 (337)
T PTZ00035        117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQI---AERFGLDPEDVLDNIAYARAY  193 (337)
T ss_pred             CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHH---HHHhCCChHhHhhceEEEccC
Confidence            3588899999999999999999876652      356898999864 345433333   222222         111111


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657           78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l  109 (403)
                      ......+.+......+....+++||||+-..+
T Consensus       194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital  225 (337)
T PTZ00035        194 NHEHQMQLLSQAAAKMAEERFALLIVDSATAL  225 (337)
T ss_pred             CHHHHHHHHHHHHHHhhccCccEEEEECcHHh
Confidence            11111222233333333457889999986643

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.22  E-value=0.0081  Score=54.19  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .-|+++|.+|+||||+...|.
T Consensus        25 ~~v~ivG~~~~GKSsli~~l~   45 (196)
T PRK00454         25 PEIAFAGRSNVGKSSLINALT   45 (196)
T ss_pred             CEEEEEcCCCCCHHHHHHHHh
Confidence            448899999999999998887

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.22  E-value=0.0012  Score=72.04  Aligned_cols=65  Identities=15%  Similarity=0.221  Sum_probs=36.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .++.+.|+||||.-.+    ......  .+..+|.+++|+|+..+  ......+.... ..++ .-+++||+|..
T Consensus       293 ~~~kItfiDTPGhe~F----~~mr~r--g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~  360 (742)
T CHL00189        293 ENQKIVFLDTPGHEAF----SSMRSR--GANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKA  360 (742)
T ss_pred             CceEEEEEECCcHHHH----HHHHHH--HHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence            3578999999996432    111111  12235889999998543  22222222222 2233 45899999964

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.21  E-value=0.00075  Score=62.76  Aligned_cols=40  Identities=33%  Similarity=0.473  Sum_probs=34.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .++.+|.|+|.+||||||+|..|...|...  +|.++..|-|
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~Y   45 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDY   45 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccc
Confidence            345899999999999999999999888744  8889998865

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=97.21  E-value=0.0071  Score=59.06  Aligned_cols=160  Identities=20%  Similarity=0.233  Sum_probs=89.4

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +..+|+++|. .-+||=|++..|...+.++|+++..+...        |...+-...|+++-...... -...+..++.+
T Consensus       111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG--------QTGimia~~Gv~iDav~~DF-vaGavE~~v~~  181 (301)
T PF07755_consen  111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG--------QTGIMIAGYGVPIDAVPSDF-VAGAVEALVPE  181 (301)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S--------HHHHHCHSEC--GGGSBGGG-HHHHHHHHHHH
T ss_pred             CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC--------CceEEEecCCeeccchhhhh-HHHHHHHHHHh
Confidence            5678889999 99999999999999999999999998866        22222234444432221111 12233444444


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-------------cHHHHHHHHHHhhh---cCCe
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-------------TGQEAAALVTTFNI---EIGI  156 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-------------~g~~~~~~~~~~~~---~~~i  156 (403)
                      +. ++.|++||++-|.+.... ...-...+..-..|+.++|+-++.             ..++.++....+..   ..++
T Consensus       182 ~~-~~~d~ivVEGQgsL~hPa-y~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~~~~~~~V  259 (301)
T PF07755_consen  182 AA-EEHDWIVVEGQGSLSHPA-YSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAGTKPPAKV  259 (301)
T ss_dssp             HC-CC-SEEEEE--S-TTSTT-THHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCCGC---EE
T ss_pred             hC-cCCCEEEEeccccccCcc-ccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhccCCCccE
Confidence            42 255999999988876322 112123455566789999998871             12344444444432   2348


Q ss_pred             eEEEEccCCCCC--chhHHHHHHHHhCCCe
Q 015657          157 TGAILTKLDGDS--RGGAALSVKEVSGKPI  184 (403)
Q Consensus       157 ~GvIlNk~D~~~--~~~~~~~~~~~~g~pi  184 (403)
                      .||-+|-.+.+.  ....+..+.+.+|+|+
T Consensus       260 vgIslNt~~l~~~e~~~~~~~~~~e~glPv  289 (301)
T PF07755_consen  260 VGISLNTSGLSEEEAKAAIERIEEELGLPV  289 (301)
T ss_dssp             EEEECC-TTS-HHHHHHHHHHHHHHH-S-E
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCe
Confidence            888888877542  2344566788899998

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.21  E-value=0.0084  Score=55.11  Aligned_cols=80  Identities=19%  Similarity=0.330  Sum_probs=45.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeC-CCCCCHHHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~-~~~~~~~~~~~~~l~~~~   94 (403)
                      +|+|+|++||||||+...|+.++... +.+++.+. |+.-  .   .  ...  ....+.. ...... ..+.+++..+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-~~~E--~---~--~~~--~~~~i~q~~vg~~~-~~~~~~i~~aL   71 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-DPIE--F---V--HES--KRSLINQREVGLDT-LSFENALKAAL   71 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-CCcc--c---c--ccC--ccceeeecccCCCc-cCHHHHHHHHh
Confidence            58999999999999999999888754 44554443 3221  0   0  000  1111110 000011 12334455544


Q ss_pred             hCCCcEEEEeCCC
Q 015657           95 KKNVDVVIVDTAG  107 (403)
Q Consensus        95 ~~~~D~VIIDtpg  107 (403)
                      ..+.|++++|=+.
T Consensus        72 r~~pd~ii~gEir   84 (198)
T cd01131          72 RQDPDVILVGEMR   84 (198)
T ss_pred             cCCcCEEEEcCCC
Confidence            4679999999985

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK05642 DNA replication initiation factor; Validated

Probab=97.21  E-value=0.0027  Score=59.98  Aligned_cols=37  Identities=19%  Similarity=0.372  Sum_probs=33.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+.+.|++|+|||.++..++..+..+|++|++++++
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~   82 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA   82 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence            5678999999999999999999998889999988865

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.20  E-value=0.003  Score=58.24  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      .|+++|++||||||+...|.
T Consensus         2 ~vll~G~~~sGKTsL~~~l~   21 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLT   21 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHh
Confidence            37889999999999997775

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.19  E-value=0.00046  Score=63.17  Aligned_cols=37  Identities=32%  Similarity=0.521  Sum_probs=32.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      +|.|+|++||||||++..|+..+  .+.++.++..|.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence            58899999999999999999888  46688899999654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd04149 Arf6 Arf6 subfamily

Probab=97.18  E-value=0.0017  Score=57.80  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|.||||...... +.   ..  ....++.+++|+|+.........   +..+..    .-.+.-+|.||+|...
T Consensus        51 ~~~~~~l~Dt~G~~~~~~-~~---~~--~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          51 KNVKFNVWDVGGQDKIRP-LW---RH--YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD  124 (168)
T ss_pred             CCEEEEEEECCCCHHHHH-HH---HH--HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence            357899999999743211 11   11  12245889999999654333222   222211    1123558999999643

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01861 Rab6 Rab6 subfamily

Probab=97.18  E-value=0.0026  Score=55.31  Aligned_cols=65  Identities=18%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhhcC---CeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~~~---~i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||..... .+   ....  .-..+.+++|.|.....+.   ......+....   ...-+++||+|..
T Consensus        48 ~~~l~~~D~~G~~~~~-~~---~~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~  118 (161)
T cd01861          48 TVRLQLWDTAGQERFR-SL---IPSY--IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS  118 (161)
T ss_pred             EEEEEEEECCCcHHHH-HH---HHHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence            3568999999964321 11   1111  1234778999998654333   22222222211   2345899999983

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04123 Rab21 Rab21 subfamily

Probab=97.17  E-value=0.0036  Score=54.13  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.++||||....     ..+... ....++.+++|+|..........   ...   ....-...-+++||+|.... 
T Consensus        48 ~~~~~~~D~~g~~~~-----~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~  121 (162)
T cd04123          48 RIDLAIWDTAGQERY-----HALGPI-YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR  121 (162)
T ss_pred             EEEEEEEECCchHHH-----HHhhHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            457899999996422     111111 11245888999998655433222   112   21111234588999996532 


Q ss_pred             ---hhHHHHHHHHhCCCeE
Q 015657          170 ---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~  185 (403)
                         ...+.......+.++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~  140 (162)
T cd04123         122 VVSKSEAEEYAKSVGAKHF  140 (162)
T ss_pred             CCCHHHHHHHHHHcCCEEE
Confidence               1223334445566653

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.17  E-value=0.0034  Score=68.65  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=57.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~   89 (403)
                      +.+++.+.|.+|+||||++..++....+.|.+|++||..-. +|.       ..+..|++   ++.... ......+...
T Consensus        59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~-------~A~~lGvDl~~llv~~~-~~~E~~l~~i  130 (790)
T PRK09519         59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD-------YAKKLGVDTDSLLVSQP-DTGEQALEIA  130 (790)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH-------HHHHcCCChhHeEEecC-CCHHHHHHHH
Confidence            35889999999999999999999888889999999998732 221       23333443   121111 1122222222


Q ss_pred             HHHHHhCCCcEEEEeCCCCcc
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~  110 (403)
                      ...++...+++||||+-..+.
T Consensus       131 ~~lv~~~~~~LVVIDSI~aL~  151 (790)
T PRK09519        131 DMLIRSGALDIVVIDSVAALV  151 (790)
T ss_pred             HHHhhcCCCeEEEEcchhhhc
Confidence            222344679999999966543

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.17  E-value=0.003  Score=60.53  Aligned_cols=80  Identities=30%  Similarity=0.489  Sum_probs=53.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ++.-++++|++|+|||.++++++..+.+.|++|+++..    |..+..+...-..        +.      ...+....+
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~----~el~~~Lk~~~~~--------~~------~~~~l~~~l  165 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA----PDLLSKLKAAFDE--------GR------LEEKLLREL  165 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH----HHHHHHHHHHHhc--------Cc------hHHHHHHHh
Confidence            45568999999999999999999999988999998774    2334444211110        00      011112223


Q ss_pred             HhCCCcEEEEeCCCCccccH
Q 015657           94 KKKNVDVVIVDTAGRLQIDK  113 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~  113 (403)
                        ..+|+.|||=-|....+.
T Consensus       166 --~~~dlLIiDDlG~~~~~~  183 (254)
T COG1484         166 --KKVDLLIIDDIGYEPFSQ  183 (254)
T ss_pred             --hcCCEEEEecccCccCCH
Confidence              579999999888766543

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.17  E-value=0.0042  Score=54.94  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=43.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh-----hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN-----IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~-----~~~~i~GvIlNk~D~~  167 (403)
                      ..+++.|+||||.......+.   ...  .-.++.+++|+|..........   ...+.     ..+ ..-+|.||+|..
T Consensus        49 ~~~~~~i~Dt~G~~~~~~~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~  122 (170)
T cd04115          49 ERIKVQLWDTAGQERFRKSMV---QHY--YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEV-PRILVGNKCDLR  122 (170)
T ss_pred             eEEEEEEEeCCChHHHHHhhH---HHh--hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCC-CEEEEEECccch
Confidence            357899999999642211111   111  1245788999999654333222   21111     122 245899999964


Q ss_pred             Cc----hhHHHHHHHHhCCCe
Q 015657          168 SR----GGAALSVKEVSGKPI  184 (403)
Q Consensus       168 ~~----~~~~~~~~~~~g~pi  184 (403)
                      ..    ...+.......+.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~  143 (170)
T cd04115         123 EQIQVPTDLAQRFADAHSMPL  143 (170)
T ss_pred             hhcCCCHHHHHHHHHHcCCcE
Confidence            22    223344444555555

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01893 Miro1 Miro1 subfamily

Probab=97.17  E-value=0.0025  Score=56.22  Aligned_cols=66  Identities=17%  Similarity=0.129  Sum_probs=38.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH-------HHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+++.|+||||.........    ..  ....+.+++|+|.....+.....       +...... ..-+|.||+|...
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-pviiv~nK~Dl~~  117 (166)
T cd01893          45 ERVPTTIVDTSSRPQDRANLA----AE--IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKV-PIILVGNKSDLRD  117 (166)
T ss_pred             CeEEEEEEeCCCchhhhHHHh----hh--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEchhccc
Confidence            467899999998753221111    11  23457889999986654443321       1122222 3447889999754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK13695 putative NTPase; Provisional

Probab=97.17  E-value=0.029  Score=50.18  Aligned_cols=31  Identities=42%  Similarity=0.542  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM   47 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl   47 (403)
                      .++++|.+|+||||++..++..+...|.++.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~   32 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG   32 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            3789999999999999999998887787764

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.17  E-value=0.0016  Score=57.22  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=37.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHh-hh---cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTF-NI---EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~-~~---~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|.||||...... +   ....  .-.++.+++|+|+.....   +....... ..   .-.+..++.||.|...
T Consensus        42 ~~~~~~l~D~~G~~~~~~-~---~~~~--~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  115 (159)
T cd04150          42 KNISFTVWDVGGQDKIRP-L---WRHY--FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN  115 (159)
T ss_pred             CCEEEEEEECCCCHhHHH-H---HHHH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence            457789999999642211 1   1111  234588999999965322   22222221 11   1133458999999753

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.17  E-value=0.065  Score=56.07  Aligned_cols=91  Identities=24%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      .-+.-++++|+.|+||||+|..+|.++--. |..+     ++...  ...-.........+++..+. .....+.+++.+
T Consensus        33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-----~pCg~--C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Ii  105 (491)
T PRK14964         33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS-----DPCGT--CHNCISIKNSNHPDVIEIDAASNTSVDDIKVIL  105 (491)
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC-----CCccc--cHHHHHHhccCCCCEEEEecccCCCHHHHHHHH
Confidence            446689999999999999999999877422 2211     11111  11111122223344444332 233455566655


Q ss_pred             HHHH----hCCCcEEEEeCCCCcc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~  110 (403)
                      +.+.    ...|.++|||-+-.+.
T Consensus       106 e~~~~~P~~~~~KVvIIDEah~Ls  129 (491)
T PRK14964        106 ENSCYLPISSKFKVYIIDEVHMLS  129 (491)
T ss_pred             HHHHhccccCCceEEEEeChHhCC
Confidence            5543    2468899999987664

>cd04125 RabA_like RabA-like subfamily

Probab=97.17  E-value=0.0044  Score=55.88  Aligned_cols=65  Identities=20%  Similarity=0.130  Sum_probs=36.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~  167 (403)
                      .+++.|+||||...... +   ...  ..-..+.+++|.|.....+......      .+...-.+.-+|.||.|..
T Consensus        48 ~~~~~i~Dt~g~~~~~~-~---~~~--~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~  118 (188)
T cd04125          48 IIKLQIWDTNGQERFRS-L---NNS--YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV  118 (188)
T ss_pred             EEEEEEEECCCcHHHHh-h---HHH--HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence            46788999999532111 0   011  1224588899999865544333222      1211122345888999964

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.16  E-value=0.00074  Score=65.85  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=37.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~r   55 (403)
                      .+.|.+|.|+|.+||||||++..|...+.+.  +.+|.++..|.+.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            4578999999999999999999998888743  4579999999765

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd01868 Rab11_like Rab11-like

Probab=97.16  E-value=0.0047  Score=54.01  Aligned_cols=20  Identities=35%  Similarity=0.634  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      -|+++|.+||||||+...|.
T Consensus         5 ki~vvG~~~~GKSsli~~l~   24 (165)
T cd01868           5 KIVLIGDSGVGKSNLLSRFT   24 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999998886

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.15  E-value=0.0049  Score=53.28  Aligned_cols=19  Identities=32%  Similarity=0.702  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |++.|.+||||||+...|.
T Consensus         4 i~iiG~~~vGKTsl~~~~~   22 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLI   22 (162)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6888999999999997776

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01862 Rab7 Rab7 subfamily

Probab=97.15  E-value=0.0031  Score=55.34  Aligned_cols=19  Identities=32%  Similarity=0.628  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...|.
T Consensus         3 i~viG~~~~GKSsl~~~l~   21 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYV   21 (172)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999997775

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK04040 adenylate kinase; Provisional

Probab=97.14  E-value=0.00081  Score=61.44  Aligned_cols=31  Identities=39%  Similarity=0.516  Sum_probs=26.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      |.+|+++|.+||||||++..|+..|. .++++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~   32 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI   32 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence            67899999999999999999998875 24444

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.14  E-value=0.0019  Score=58.27  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh-hh---cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF-NI---EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~-~~---~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||...... +   ....  ...++.+++|+|+........   .+..+ ..   .-...-+|.||.|...
T Consensus        59 ~~~~~~l~D~~G~~~~~~-~---~~~~--~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~  132 (182)
T PTZ00133         59 KNLKFTMWDVGGQDKLRP-L---WRHY--YQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN  132 (182)
T ss_pred             CCEEEEEEECCCCHhHHH-H---HHHH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence            467899999999642111 1   0111  224588999999865432222   22222 11   1123458889999643

>PRK05636 replicative DNA helicase; Provisional

Probab=97.14  E-value=0.0098  Score=62.50  Aligned_cols=90  Identities=19%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCH--HHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~--~~~~~~~   89 (403)
                      +..++++.|.+|+||||++.++|...+ +.|++|+++.+..........+  ++...+++...... ....  ...+.++
T Consensus       264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~--ls~~s~v~~~~i~~g~l~~~e~~~~~~a  341 (505)
T PRK05636        264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRL--LSAEAEVRLSDMRGGKMDEDAWEKLVQR  341 (505)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence            457888899999999999999999877 4689999999886554443332  23333333221111 1222  2234455


Q ss_pred             HHHHHhCCCcEEEEeCCC
Q 015657           90 LEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg  107 (403)
                      +..+  .+..+.|-|+|.
T Consensus       342 ~~~l--~~~~l~I~d~~~  357 (505)
T PRK05636        342 LGKI--AQAPIFIDDSAN  357 (505)
T ss_pred             HHHH--hcCCEEEECCCC
Confidence            5555  345566666665

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.13  E-value=0.063  Score=52.36  Aligned_cols=35  Identities=31%  Similarity=0.301  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      .++++|++|+||||++..++..+...++...++..
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~   74 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLEL   74 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence            46999999999999999999888765544434443

>cd04122 Rab14 Rab14 subfamily

Probab=97.13  E-value=0.0038  Score=54.90  Aligned_cols=83  Identities=18%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHh---hhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTF---NIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~---~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|.||||......    .....  .-..+.+++|.|.....+.....   ...   ...-.+.-+|.||+|....
T Consensus        49 ~~~~l~i~Dt~G~~~~~~----~~~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~  122 (166)
T cd04122          49 QKIKLQIWDTAGQERFRA----VTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ  122 (166)
T ss_pred             EEEEEEEEECCCcHHHHH----HHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            357889999999642211    11111  22458899999996554333222   111   1111234588899996432


Q ss_pred             h----hHHHHHHHHhCCCe
Q 015657          170 G----GAALSVKEVSGKPI  184 (403)
Q Consensus       170 ~----~~~~~~~~~~g~pi  184 (403)
                      .    ..+.......+.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (166)
T cd04122         123 RDVTYEEAKQFADENGLLF  141 (166)
T ss_pred             cCcCHHHHHHHHHHcCCEE
Confidence            1    23333444445544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.13  E-value=0.0028  Score=62.28  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=35.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAA   58 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~   58 (403)
                      ...++.|+|.+|+||||++..++...+.      .+.+|++||++- +++.-
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~r  145 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPER  145 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHH
Confidence            3588899999999999999999887653      223899999875 34443

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.12  E-value=0.0039  Score=56.56  Aligned_cols=113  Identities=24%  Similarity=0.306  Sum_probs=56.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...++++|+.|||||++-..|...     ..+.          ++..   ...  ++..... .                
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~-----~~~~----------T~tS---~e~--n~~~~~~-~----------------   45 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNG-----KTVP----------TVTS---MEN--NIAYNVN-N----------------   45 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHS-----S-------------B------SSE--EEECCGS-S----------------
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcC-----CcCC----------eecc---ccC--CceEEee-c----------------
Confidence            356899999999999999777742     1111          1000   001  0100000 0                


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH-HHHHHHHHh---------hhcCCeeEEEEccC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTF---------NIEIGITGAILTKL  164 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~-~~~~~~~~~---------~~~~~i~GvIlNk~  164 (403)
                      ...-.+-|||.||....-..+...+..   ....-.+++|||+.+.+ ++...+..+         .......-|++||.
T Consensus        46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~---~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~  122 (181)
T PF09439_consen   46 SKGKKLRLVDIPGHPRLRSKLLDELKY---LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ  122 (181)
T ss_dssp             TCGTCECEEEETT-HCCCHHHHHHHHH---HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred             CCCCEEEEEECCCcHHHHHHHHHhhhc---hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence            134578899999987654444444222   22347899999996543 333333211         11222233788999


Q ss_pred             CCC
Q 015657          165 DGD  167 (403)
Q Consensus       165 D~~  167 (403)
                      |..
T Consensus       123 Dl~  125 (181)
T PF09439_consen  123 DLF  125 (181)
T ss_dssp             TST
T ss_pred             ccc
Confidence            854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=97.12  E-value=0.0025  Score=65.20  Aligned_cols=66  Identities=21%  Similarity=0.177  Sum_probs=36.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.|+||||.-.+    ...+..  ....+|.+++|+|+..+   ......+..+. ......-+++||+|...
T Consensus        79 ~~~i~liDtPGh~~f----~~~~~~--g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~  148 (406)
T TIGR03680        79 LRRVSFVDAPGHETL----MATMLS--GAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS  148 (406)
T ss_pred             ccEEEEEECCCHHHH----HHHHHH--HHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence            467899999996432    222211  12245889999999642   11222222221 12333457899999754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK08006 replicative DNA helicase; Provisional

Probab=97.11  E-value=0.0092  Score=62.22  Aligned_cols=148  Identities=15%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHH--HHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQ--IAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~--~~~~~   89 (403)
                      +...++|.|-||.|||+++.++|..++ +.|++|+++.+..-.......+  ++...+++..... ......+  .+..+
T Consensus       223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rl--la~~~~v~~~~i~~~~l~~~e~~~~~~a  300 (471)
T PRK08006        223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRM--LASLSRVDQTRIRTGQLDDEDWARISGT  300 (471)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence            447788889999999999999999987 4699999999885544433332  2222333321111 1222222  23344


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---cc--------HH---HHHHHHHHhhhcCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MT--------GQ---EAAALVTTFNIEIG  155 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~~--------g~---~~~~~~~~~~~~~~  155 (403)
                      +..+. ....+.|-|+++. ..+ .+...+..+.... +..-++|||.   ..        .+   .+.+.++.+...++
T Consensus       301 ~~~~~-~~~~l~I~d~~~~-t~~-~i~~~~r~~~~~~-~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~  376 (471)
T PRK08006        301 MGILL-EKRNMYIDDSSGL-TPT-EVRSRARRIFREH-GGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQ  376 (471)
T ss_pred             HHHHH-hcCCEEEECCCCC-CHH-HHHHHHHHHHHhc-CCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence            44431 2445666666543 221 2222222222211 1123666675   10        11   22233455667788


Q ss_pred             eeEEEEccCCCC
Q 015657          156 ITGAILTKLDGD  167 (403)
Q Consensus       156 i~GvIlNk~D~~  167 (403)
                      +..|++..+...
T Consensus       377 ipVi~LsQLnR~  388 (471)
T PRK08006        377 VPVVALSQLNRS  388 (471)
T ss_pred             CeEEEEEecCcc
Confidence            887888777643

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=97.11  E-value=0.0084  Score=58.63  Aligned_cols=90  Identities=24%  Similarity=0.359  Sum_probs=61.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh----CC------CcEEEEeccCCChhhHHHHHHhhhccCCc--------eEeC-
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKK----QG------KSCMLVAGDVYRPAAIDQLVILGEQVGVP--------VYTA-   76 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~----~G------~kVllVd~D~~rp~~~~~l~~~~~~~gv~--------v~~~-   76 (403)
                      ...++.|.+|+||||++.-|.-+++.    .|      .+|++|.|..+++.....+.......+++        .... 
T Consensus        90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~  169 (402)
T COG3598          90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS  169 (402)
T ss_pred             eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence            44566699999999999988877763    24      47999999999999888776665555543        1110 


Q ss_pred             --CC---CCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657           77 --GT---EVKPSQIAKQGLEEAKKKNVDVVIVDTA  106 (403)
Q Consensus        77 --~~---~~~~~~~~~~~l~~~~~~~~D~VIIDtp  106 (403)
                        ..   ...| ...++....+....+|+||||+-
T Consensus       170 Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~  203 (402)
T COG3598         170 GAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPF  203 (402)
T ss_pred             cCCCccccccH-HHHHHHHHHHHHhCCCeEEEcch
Confidence              01   1223 34555555555568999999983

>cd04140 ARHI_like ARHI subfamily

Probab=97.11  E-value=0.006  Score=53.65  Aligned_cols=66  Identities=18%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HH---Hhh----hcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VT---TFN----IEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~---~~~----~~~~i~GvIlNk~D  165 (403)
                      ..+.+.|+||||......     +... ....++.+++|.|....+.....   ..   .+.    ... +.-+|.||.|
T Consensus        47 ~~~~l~i~Dt~G~~~~~~-----~~~~-~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-piilv~nK~D  119 (165)
T cd04140          47 NICTLQITDTTGSHQFPA-----MQRL-SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI-PIMLVGNKCD  119 (165)
T ss_pred             EEEEEEEEECCCCCcchH-----HHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-CEEEEEECcc
Confidence            356788999999754321     1111 11235788999998655433221   11   111    122 3448999999


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      ...
T Consensus       120 l~~  122 (165)
T cd04140         120 ESH  122 (165)
T ss_pred             ccc
Confidence            743

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01860 Rab5_related Rab5-related subfamily

Probab=97.11  E-value=0.0015  Score=56.99  Aligned_cols=65  Identities=20%  Similarity=0.177  Sum_probs=35.6

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhhcC---CeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIEI---GITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~~~---~i~GvIlNk~D~~  167 (403)
                      .+.+.|+|+||....     ..+.. .....++.+++|+|+....+.   ......+....   -+.-++.||.|..
T Consensus        49 ~~~~~i~D~~G~~~~-----~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  119 (163)
T cd01860          49 TVKFEIWDTAGQERY-----RSLAP-MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE  119 (163)
T ss_pred             EEEEEEEeCCchHHH-----HHHHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            567889999996321     11111 112245888999998655333   22222222211   2234788999965

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.0047  Score=62.16  Aligned_cols=157  Identities=16%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC--CCCCCHHHHH-----
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--GTEVKPSQIA-----   86 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~--~~~~~~~~~~-----   86 (403)
                      +..-+++.|+.-+||||+...|.+.+..       ||     +...+.+...+...|-..+..  -.+....+.-     
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~-------id-----~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi   73 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGE-------ID-----KRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTI   73 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCC-------CC-----HHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEE
Confidence            3455788899999999999999865532       22     334444444443343331110  0000111110     


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH----------HHHHHHHHHhhhcCCe
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG----------QEAAALVTTFNIEIGI  156 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g----------~~~~~~~~~~~~~~~i  156 (403)
                      .-+...+..+.|.+-||||||.-.+-..+      +..+..+|..+|||||..+          |.-....-.....++-
T Consensus        74 ~~~~~~fet~k~~~tIiDaPGHrdFvknm------ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~  147 (428)
T COG5256          74 DVAHSKFETDKYNFTIIDAPGHRDFVKNM------ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQ  147 (428)
T ss_pred             EEEEEEeecCCceEEEeeCCchHHHHHHh------hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCce
Confidence            00011222367889999999943222222      2233445888999999544          2211111111223444


Q ss_pred             eEEEEccCCCCCch----h----HHHHHHHHhCCC---eEEee
Q 015657          157 TGAILTKLDGDSRG----G----AALSVKEVSGKP---IKLVG  188 (403)
Q Consensus       157 ~GvIlNk~D~~~~~----~----~~~~~~~~~g~p---i~fig  188 (403)
                      .-|.+||+|.....    .    .+..+.+..|..   +.|+.
T Consensus       148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIP  190 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIP  190 (428)
T ss_pred             EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEe
Confidence            55888999976422    1    122355566664   44665

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.0065  Score=63.06  Aligned_cols=30  Identities=30%  Similarity=0.516  Sum_probs=26.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ   42 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~   42 (403)
                      .+|.|++++|++|+||||+...|.+++.+.
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~   96 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ   96 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHh
Confidence            467888899999999999999999888753

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.08  E-value=0.08  Score=56.93  Aligned_cols=97  Identities=24%  Similarity=0.167  Sum_probs=52.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE-EEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC-MLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV-llVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      .-+..++|+|+.|+||||++..||..|--.+..- --++.++.+.  .............+++..+. .....+.+++.+
T Consensus        36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~--C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli  113 (618)
T PRK14951         36 RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV--CQACRDIDSGRFVDYTELDAASNRGVDEVQQLL  113 (618)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc--cHHHHHHHcCCCCceeecCcccccCHHHHHHHH
Confidence            4467789999999999999999998886322100 0011111110  01111111222233333322 223455566666


Q ss_pred             HHHH----hCCCcEEEEeCCCCccc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~~  111 (403)
                      +.+.    ...|.++|||-.-.+..
T Consensus       114 ~~~~~~p~~g~~KV~IIDEvh~Ls~  138 (618)
T PRK14951        114 EQAVYKPVQGRFKVFMIDEVHMLTN  138 (618)
T ss_pred             HHHHhCcccCCceEEEEEChhhCCH
Confidence            5543    24589999998887753

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.08  E-value=0.00091  Score=60.78  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=33.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      ..+|+|.|..||||||++..|+.+|...|++|.++..
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~   39 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE   39 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            4789999999999999999999999999999976543

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.07  E-value=0.0056  Score=55.97  Aligned_cols=65  Identities=17%  Similarity=0.168  Sum_probs=36.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhh--------hcCCeeEEEEccC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFN--------IEIGITGAILTKL  164 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~--------~~~~i~GvIlNk~  164 (403)
                      ..+.+.|.||||.-... .+.   ...  .-..+.+++|.|...........   ..+.        ..+ +.-+|.||.
T Consensus        48 ~~~~l~l~Dt~G~~~~~-~~~---~~~--~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~-piilv~NK~  120 (201)
T cd04107          48 TVVRLQLWDIAGQERFG-GMT---RVY--YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPI-PCLLLANKC  120 (201)
T ss_pred             CEEEEEEEECCCchhhh-hhH---HHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCC-cEEEEEECC
Confidence            35788999999974321 111   111  12458889999986544333221   1111        122 235888999


Q ss_pred             CCC
Q 015657          165 DGD  167 (403)
Q Consensus       165 D~~  167 (403)
                      |..
T Consensus       121 Dl~  123 (201)
T cd04107         121 DLK  123 (201)
T ss_pred             Ccc
Confidence            974

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.06  E-value=0.025  Score=59.60  Aligned_cols=92  Identities=22%  Similarity=0.245  Sum_probs=51.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      .-+..++++|++|+||||+|..||..|--. +..     .++...-  ..........-.+++..+. .....+.+++.+
T Consensus        36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~~pCg~C--~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~  108 (509)
T PRK14958         36 YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-----ANPCNDC--ENCREIDEGRFPDLFEVDAASRTKVEDTRELL  108 (509)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----cccCCCC--HHHHHHhcCCCceEEEEcccccCCHHHHHHHH
Confidence            446778999999999999999999888532 211     1111110  0111111111223333222 223444455555


Q ss_pred             HHHH----hCCCcEEEEeCCCCccc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~~  111 (403)
                      +.+.    ...|.++|||-+-.+..
T Consensus       109 ~~~~~~p~~~~~kV~iIDE~~~ls~  133 (509)
T PRK14958        109 DNIPYAPTKGRFKVYLIDEVHMLSG  133 (509)
T ss_pred             HHHhhccccCCcEEEEEEChHhcCH
Confidence            5442    24688999999887753

>TIGR00235 udk uridine kinase

Probab=97.06  E-value=0.00079  Score=62.20  Aligned_cols=41  Identities=34%  Similarity=0.495  Sum_probs=33.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +.++.+|+|+|++||||||++..|+..+..  ..+.++..|.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~   43 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY   43 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence            456789999999999999999999987764  46777888765

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.06  E-value=0.12  Score=57.33  Aligned_cols=28  Identities=32%  Similarity=0.465  Sum_probs=24.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .-+..++|+|++|+||||++..||..|-
T Consensus        36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         36 RLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            3467779999999999999999998775

>PRK07004 replicative DNA helicase; Provisional

Probab=97.06  E-value=0.012  Score=61.11  Aligned_cols=91  Identities=15%  Similarity=0.221  Sum_probs=58.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCH--HHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKP--SQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~--~~~~~~~   89 (403)
                      +...+++.|.||+|||+++.++|...+. .|++|+++.+..........+  ++...+++..... .....  ...+..+
T Consensus       212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~--la~~~~v~~~~i~~g~l~~~e~~~~~~a  289 (460)
T PRK07004        212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRM--LGSVGRLDQHRMRTGRLTDEDWPKLTHA  289 (460)
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH--HHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence            4477888999999999999999998874 699999999886654444333  2222333322111 11222  2334566


Q ss_pred             HHHHHhCCCcEEEEeCCCC
Q 015657           90 LEEAKKKNVDVVIVDTAGR  108 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~  108 (403)
                      +..+  .+..+.|-|+|..
T Consensus       290 ~~~l--~~~~l~I~d~~~~  306 (460)
T PRK07004        290 VQKM--SEAQLFIDETGGL  306 (460)
T ss_pred             HHHH--hcCCEEEECCCCC
Confidence            6666  3466777777753

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.05  E-value=0.004  Score=56.90  Aligned_cols=89  Identities=21%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCCC-----CH---HH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEV-----KP---SQ   84 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~~-----~~---~~   84 (403)
                      .-.|.+.+..|-||||.|..+|......|++|+++..=--.  .+-..-+   ....++.++..+...     .+   ..
T Consensus        22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l---~~l~~v~~~~~g~~~~~~~~~~~e~~~   98 (191)
T PRK05986         22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL---EFGGGVEFHVMGTGFTWETQDRERDIA   98 (191)
T ss_pred             CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH---hcCCCcEEEECCCCCcccCCCcHHHHH
Confidence            34677888899999999999999999999999998754222  1212222   222245544433211     11   12


Q ss_pred             HHHHHHH----HHHhCCCcEEEEeCC
Q 015657           85 IAKQGLE----EAKKKNVDVVIVDTA  106 (403)
Q Consensus        85 ~~~~~l~----~~~~~~~D~VIIDtp  106 (403)
                      .++++++    .+....||+||+|=-
T Consensus        99 ~~~~~~~~a~~~l~~~~ydlvVLDEi  124 (191)
T PRK05986         99 AAREGWEEAKRMLADESYDLVVLDEL  124 (191)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEehh
Confidence            2333333    334578999999953

>cd00157 Rho Rho (Ras homology) family

Probab=97.05  E-value=0.00089  Score=58.78  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=37.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH----hhhc--CCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT----FNIE--IGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~----~~~~--~~i~GvIlNk~D~~  167 (403)
                      ..+.+.++||||......     +... ....++.+++|+|+....+.......    +...  -...-+|.||.|..
T Consensus        46 ~~~~l~~~D~~g~~~~~~-----~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  117 (171)
T cd00157          46 KQVNLGLWDTAGQEEYDR-----LRPL-SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR  117 (171)
T ss_pred             EEEEEEEEeCCCcccccc-----cchh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence            457899999999753211     1110 11235788999998665444333221    1111  12345888999954

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=97.05  E-value=0.078  Score=56.91  Aligned_cols=96  Identities=22%  Similarity=0.206  Sum_probs=51.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE-EEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl-lVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      .-+.-++++|+.|+||||++..||..|--.+.... -...++...  .............+++..+. .....+.+++.+
T Consensus        44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~--c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi  121 (598)
T PRK09111         44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV--GEHCQAIMEGRHVDVLEMDAASHTGVDDIREII  121 (598)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc--cHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence            44677899999999999999999988753221110 000011110  11111122223334443321 223455566665


Q ss_pred             HHHH----hCCCcEEEEeCCCCcc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~  110 (403)
                      +.+.    ..+|.+||||-+-.+.
T Consensus       122 e~~~~~P~~a~~KVvIIDEad~Ls  145 (598)
T PRK09111        122 ESVRYRPVSARYKVYIIDEVHMLS  145 (598)
T ss_pred             HHHHhchhcCCcEEEEEEChHhCC
Confidence            5553    2467899999876664

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.04  E-value=0.0038  Score=62.38  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh---C---CCcEEEEeccC-CChhhHHHHHHhhhccCCc-------eEeCCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK---Q---GKSCMLVAGDV-YRPAAIDQLVILGEQVGVP-------VYTAGTE   79 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~---~---G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~-------v~~~~~~   79 (403)
                      ...++-|+|.+|+|||++|..|+...+.   .   +.+|++||..- ++|.-+.+.   .+..+++       ++... .
T Consensus       125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i---a~~~g~d~~~~l~~I~~~~-~  200 (344)
T PLN03187        125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI---AERFGMDADAVLDNIIYAR-A  200 (344)
T ss_pred             CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH---HHHcCCChhhhcCeEEEec-C
Confidence            3488889999999999999999876542   1   36899999863 455543333   2223322       11111 1


Q ss_pred             CCHHH---HHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657           80 VKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        80 ~~~~~---~~~~~l~~~~~~~~D~VIIDtpg~l  109 (403)
                      .+...   .+......+...++++||||+-..+
T Consensus       201 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital  233 (344)
T PLN03187        201 YTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL  233 (344)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence            12222   2222222333457899999986654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.04  E-value=0.005  Score=65.75  Aligned_cols=118  Identities=17%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|++|+||||+...|.      |.++..+.  .+++....     .    ..+...                  .
T Consensus       119 lrIvLVGKTGVGKSSLINSIL------Gekvf~vs--s~~~~TTr-----~----~ei~~~------------------i  163 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIF------GEVKFSTD--AFGMGTTS-----V----QEIEGL------------------V  163 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHh------cccccccc--CCCCCceE-----E----EEEEEE------------------E
Confidence            458999999999999999887      65554332  22222210     0    000000                  1


Q ss_pred             CCCcEEEEeCCCCcccc------HHhHHHHHHHhhhcCCceEEEEEecc---cH-H--HHHHHH-HHhhhcC-CeeEEEE
Q 015657           96 KNVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAM---TG-Q--EAAALV-TTFNIEI-GITGAIL  161 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d------~~l~~el~~i~~~~~~~~vllVvda~---~g-~--~~~~~~-~~~~~~~-~i~GvIl  161 (403)
                      .+..+.||||||.....      .....++..+.....++.+++|....   .. +  .+++.+ ..|.+.+ .-.-||+
T Consensus       164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF  243 (763)
T TIGR00993       164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL  243 (763)
T ss_pred             CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence            35689999999987532      22333333333333467666665431   11 1  223322 2344433 4456899


Q ss_pred             ccCCCCC
Q 015657          162 TKLDGDS  168 (403)
Q Consensus       162 Nk~D~~~  168 (403)
                      |+.|...
T Consensus       244 ThgD~lp  250 (763)
T TIGR00993       244 THAASAP  250 (763)
T ss_pred             eCCccCC
Confidence            9998653

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PTZ00301 uridine kinase; Provisional

Probab=97.03  E-value=0.0012  Score=61.49  Aligned_cols=42  Identities=31%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CcEEEEeccCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYR   55 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G-~kVllVd~D~~r   55 (403)
                      +..+|.|+|.+||||||+|..|+..+.+. | ..|.++..|-|.
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy   45 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY   45 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            34789999999999999999999888643 4 346688888653

>PRK06904 replicative DNA helicase; Validated

Probab=97.02  E-value=0.017  Score=60.33  Aligned_cols=92  Identities=16%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEe--CCCCCCHHH--HHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AGTEVKPSQ--IAKQ   88 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~--~~~~~~~~~--~~~~   88 (403)
                      +...+++.|-||+|||+++.++|...+. .|++|+++.++.........+  ++...+++...  .+......+  .+..
T Consensus       220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~g~~l~~~e~~~~~~  297 (472)
T PRK06904        220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM--LASLSRVDQTKIRTGQNLDQQDWAKISS  297 (472)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhCCCCHHHhccCCCCCHHHHHHHHH
Confidence            3467888899999999999999998875 599999999985544443332  22333333221  121223332  3344


Q ss_pred             HHHHHHhCCCcEEEEeCCCC
Q 015657           89 GLEEAKKKNVDVVIVDTAGR  108 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~  108 (403)
                      ++..+. ....+.|-|+|+.
T Consensus       298 a~~~l~-~~~~l~I~d~~~~  316 (472)
T PRK06904        298 TVGMFK-QKPNLYIDDSSGL  316 (472)
T ss_pred             HHHHHh-cCCCEEEECCCCC
Confidence            555552 2345777777763

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.01  E-value=0.022  Score=50.60  Aligned_cols=87  Identities=23%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE---eccCCChhhHHHHHHhhhccCCceEeCCCC-----CCHHH---HH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV---AGDVYRPAAIDQLVILGEQVGVPVYTAGTE-----VKPSQ---IA   86 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllV---d~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-----~~~~~---~~   86 (403)
                      |.|....|.||||+|..+|...+.+|++|+++   ..+. ..+-..-+..+   .++.++..+..     ..+.+   .+
T Consensus         5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~~~~a   80 (159)
T cd00561           5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL---PNIEIHRMGRGFFWTTENDEEDIAAA   80 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC---CCcEEEECCCCCccCCCChHHHHHHH
Confidence            44445559999999999999999999999994   4431 11222223222   25555554331     11222   22


Q ss_pred             HHHHH----HHHhCCCcEEEEeCCCC
Q 015657           87 KQGLE----EAKKKNVDVVIVDTAGR  108 (403)
Q Consensus        87 ~~~l~----~~~~~~~D~VIIDtpg~  108 (403)
                      +++++    .+....||++|+|=-..
T Consensus        81 ~~~~~~a~~~~~~~~~dLlVLDEi~~  106 (159)
T cd00561          81 AEGWAFAKEAIASGEYDLVILDEINY  106 (159)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEechHh
Confidence            33333    33356899999996443

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.01  E-value=0.0023  Score=53.50  Aligned_cols=68  Identities=19%  Similarity=0.077  Sum_probs=38.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH-------HHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+++.++|+||........      .......+.+++|+|+..........       ..........-+|+||+|...
T Consensus        43 ~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~  116 (157)
T cd00882          43 KKVKLQIWDTAGQERFRSLR------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE  116 (157)
T ss_pred             EEEEEEEEecCChHHHHhHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence            36789999999965321111      11222457889999996553332221       111222233458999999764


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       117 ~  117 (157)
T cd00882         117 E  117 (157)
T ss_pred             c
Confidence            3

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04148 RGK RGK subfamily

Probab=97.01  E-value=0.0099  Score=55.51  Aligned_cols=65  Identities=11%  Similarity=-0.021  Sum_probs=36.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~  167 (403)
                      ..+++.|+||||...    ..   ........++.+++|.|..........   ...+..    .-.+.-+|.||+|..
T Consensus        48 ~~~~l~i~Dt~G~~~----~~---~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~  119 (221)
T cd04148          48 EESTLVVIDHWEQEM----WT---EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA  119 (221)
T ss_pred             EEEEEEEEeCCCcch----HH---HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence            357899999999751    11   111111146889999999655433222   221211    112345888999964

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.01  E-value=0.025  Score=58.69  Aligned_cols=92  Identities=21%  Similarity=0.283  Sum_probs=57.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .-++++|.+|+|||+++.+++.++.+  .+++|+++.++-+.......+.   .              ....+.+....+
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~---~--------------~~~~~~~~~~~~  204 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQ---K--------------THKEIEQFKNEI  204 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH---H--------------hhhHHHHHHHHh
Confidence            34789999999999999999998874  4789998887632222211111   0              001122233333


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL  126 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~  126 (403)
                        ..+|++|||=.+.+........++..+.+..
T Consensus       205 --~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~  235 (450)
T PRK14087        205 --CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNF  235 (450)
T ss_pred             --ccCCEEEEeccccccCCHHHHHHHHHHHHHH
Confidence              4789999999987765444444554544444

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=96.99  E-value=0.0041  Score=66.90  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=36.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      +..+.||||||.-.+    ...+  +......|.+++|+|+..+  ......+.... ...+..-||+||+|...
T Consensus        50 g~~i~~IDtPGhe~f----i~~m--~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~  118 (614)
T PRK10512         50 GRVLGFIDVPGHEKF----LSNM--LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD  118 (614)
T ss_pred             CcEEEEEECCCHHHH----HHHH--HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC
Confidence            445789999996322    2221  1223345889999998543  22222222111 12333348999999753

>cd04136 Rap_like Rap-like subfamily

Probab=96.98  E-value=0.0086  Score=52.02  Aligned_cols=20  Identities=25%  Similarity=0.604  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      -|+++|.+||||||++..+.
T Consensus         3 ki~i~G~~~vGKTsl~~~~~   22 (163)
T cd04136           3 KVVVLGSGGVGKSALTVQFV   22 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999987665

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PRK04004 translation initiation factor IF-2; Validated

Probab=96.98  E-value=0.0035  Score=67.02  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +|.+|++.|.+++||||+...|.
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~   27 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIR   27 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999998884

>PTZ00369 Ras-like protein; Provisional

Probab=96.98  E-value=0.0077  Score=54.49  Aligned_cols=82  Identities=20%  Similarity=0.131  Sum_probs=42.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCC-eeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIG-ITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~-i~GvIlNk~D~~~~  169 (403)
                      .+.+-|+||||.-.... +..   ..  .-..+.+++|.|..........   ...+.   ..-+ +..+|.||+|....
T Consensus        52 ~~~l~i~Dt~G~~~~~~-l~~---~~--~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~  125 (189)
T PTZ00369         52 TCLLDILDTAGQEEYSA-MRD---QY--MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE  125 (189)
T ss_pred             EEEEEEEeCCCCccchh-hHH---HH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            45677899999754321 111   11  1134788999998655432222   12221   1112 23578899996422


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+....+..+.|+
T Consensus       126 ~~i~~~~~~~~~~~~~~~~  144 (189)
T PTZ00369        126 RQVSTGEGQELAKSFGIPF  144 (189)
T ss_pred             cccCHHHHHHHHHHhCCEE
Confidence                122334445556665

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.97  E-value=0.0072  Score=54.25  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +|+++|++||||||+|..||..+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            57899999999999999988765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.97  E-value=0.0012  Score=59.69  Aligned_cols=35  Identities=34%  Similarity=0.556  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      +|++.|..||||||++..|+.+|..+|++|..+..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~   36 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE   36 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            68999999999999999999999999999976643

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=96.97  E-value=0.11  Score=55.47  Aligned_cols=116  Identities=15%  Similarity=0.204  Sum_probs=59.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh-hHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~-~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l   90 (403)
                      ..+..++++|+.|+||||++..||.++--....    +.++...- ....+   ......+++..+. .....+.+++.+
T Consensus        36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~----~~~pC~~C~~C~~i---~~g~~~dv~eidaas~~~vd~ir~i~  108 (559)
T PRK05563         36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP----DGEPCNECEICKAI---TNGSLMDVIEIDAASNNGVDEIRDIR  108 (559)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCCccHHHHHH---hcCCCCCeEEeeccccCCHHHHHHHH
Confidence            456888999999999999999999877532110    11111100 11111   1222233332222 122344455555


Q ss_pred             HHHH----hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc
Q 015657           91 EEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM  138 (403)
Q Consensus        91 ~~~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~  138 (403)
                      +.+.    ...|.++|||-+-.+..  .....|....... |..+++++-+.
T Consensus       109 ~~v~~~p~~~~~kViIIDE~~~Lt~--~a~naLLKtLEep-p~~~ifIlatt  157 (559)
T PRK05563        109 DKVKYAPSEAKYKVYIIDEVHMLST--GAFNALLKTLEEP-PAHVIFILATT  157 (559)
T ss_pred             HHHhhCcccCCeEEEEEECcccCCH--HHHHHHHHHhcCC-CCCeEEEEEeC
Confidence            5443    24688999999876642  2222332222222 34555555443

>cd04175 Rap1 Rap1 subgroup

Probab=96.96  E-value=0.0099  Score=51.97  Aligned_cols=81  Identities=19%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh-----hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN-----IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~-----~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.|+||||...... +    ... .....+.+++|.|.....+..   .....+.     ...+ .-+|.||.|...
T Consensus        48 ~~~l~i~Dt~G~~~~~~-~----~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~  120 (164)
T cd04175          48 QCMLEILDTAGTEQFTA-M----RDL-YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLED  120 (164)
T ss_pred             EEEEEEEECCCcccchh-H----HHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchh
Confidence            46677999999753311 1    111 111247888998875443322   2222221     1223 448999999643


Q ss_pred             ch----hHHHHHHHHhCCCe
Q 015657          169 RG----GAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~~----~~~~~~~~~~g~pi  184 (403)
                      ..    .....+.+..+.|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~  140 (164)
T cd04175         121 ERVVGKEQGQNLARQWGCAF  140 (164)
T ss_pred             ccEEcHHHHHHHHHHhCCEE
Confidence            21    22334455566665

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>COG2229 Predicted GTPase [General function prediction only]

Probab=96.96  E-value=0.0081  Score=54.11  Aligned_cols=139  Identities=16%  Similarity=0.156  Sum_probs=75.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ...-|++.|+.|+||||+..+++      -+....+++|...-...  .    .  .-.....+.            ..+
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s------~k~~v~t~~~~~~~s~k--~----k--r~tTva~D~------------g~~   62 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALS------DKPLVITEADASSVSGK--G----K--RPTTVAMDF------------GSI   62 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhh------ccccceeeccccccccc--c----c--cceeEeecc------------cce
Confidence            34568999999999999998888      44555555552211110  0    0  000111100            000


Q ss_pred             H-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcC-CeeEEEEccCCCCCc
Q 015657           94 K-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEI-GITGAILTKLDGDSR  169 (403)
Q Consensus        94 ~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~-~i~GvIlNk~D~~~~  169 (403)
                      . .+++-+-++||||...++  .+-  ..+.+  .....++++|++..+  ++..++.-+.... -...|.+||.|....
T Consensus        63 ~~~~~~~v~LfgtPGq~RF~--fm~--~~l~~--ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a  136 (187)
T COG2229          63 ELDEDTGVHLFGTPGQERFK--FMW--EILSR--GAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA  136 (187)
T ss_pred             EEcCcceEEEecCCCcHHHH--HHH--HHHhC--CcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC
Confidence            0 245789999999976432  111  11111  246778899985543  3455555444333 335588999996543


Q ss_pred             --hhHHHHHHHHh--CCCe
Q 015657          170 --GGAALSVKEVS--GKPI  184 (403)
Q Consensus       170 --~~~~~~~~~~~--g~pi  184 (403)
                        ...+.++....  ..|+
T Consensus       137 ~ppe~i~e~l~~~~~~~~v  155 (187)
T COG2229         137 LPPEKIREALKLELLSVPV  155 (187)
T ss_pred             CCHHHHHHHHHhccCCCce
Confidence              33444444433  4555

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.96  E-value=0.041  Score=57.26  Aligned_cols=92  Identities=17%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC-CCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~-~~~~~~~~~~~l~~   92 (403)
                      -+..++++|+.|+||||+|..||..+--..... ...|....+  ...+   ......+++..+. .....+.+++..+.
T Consensus        39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~pCg~C~s--C~~i---~~g~~~dviEIdaas~~gVd~IReL~e~  112 (484)
T PRK14956         39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NEPCNECTS--CLEI---TKGISSDVLEIDAASNRGIENIRELRDN  112 (484)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-ccccCCCcH--HHHH---HccCCccceeechhhcccHHHHHHHHHH
Confidence            356789999999999999999998875321110 111211111  1111   1112222332221 11223444444443


Q ss_pred             HH----hCCCcEEEEeCCCCccc
Q 015657           93 AK----KKNVDVVIVDTAGRLQI  111 (403)
Q Consensus        93 ~~----~~~~D~VIIDtpg~l~~  111 (403)
                      +.    ...|.++|||=+-.+..
T Consensus       113 l~~~p~~g~~KV~IIDEah~Ls~  135 (484)
T PRK14956        113 VKFAPMGGKYKVYIIDEVHMLTD  135 (484)
T ss_pred             HHhhhhcCCCEEEEEechhhcCH
Confidence            32    34688999999887753

>cd04147 Ras_dva Ras-dva subfamily

Probab=96.96  E-value=0.0037  Score=57.05  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=36.3

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HH---Hhhh-cCCeeEEEEccCCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VT---TFNI-EIGITGAILTKLDGDS  168 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~---~~~~-~~~i~GvIlNk~D~~~  168 (403)
                      +.+.|+|+||......     +... .....+.+++|+|.....+....   ..   .+.. .-...-+|+||+|...
T Consensus        47 ~~l~i~D~~G~~~~~~-----~~~~-~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  118 (198)
T cd04147          47 LTLDILDTSGSYSFPA-----MRKL-SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE  118 (198)
T ss_pred             EEEEEEECCCchhhhH-----HHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence            6788999999653211     1111 12245889999998654333222   11   1211 1223458899999743

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=96.96  E-value=0.0097  Score=54.01  Aligned_cols=30  Identities=40%  Similarity=0.550  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|.++|.-||||||++    .+|++.|..  ++|+|
T Consensus         2 iIglTG~igsGKStv~----~~l~~~G~~--vidaD   31 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVS----KILAELGFP--VIDAD   31 (180)
T ss_dssp             EEEEEESTTSSHHHHH----HHHHHTT-E--EEEHH
T ss_pred             EEEEECCCcCCHHHHH----HHHHHCCCC--EECcc
Confidence            6899999999999999    556666655  56888

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK06321 replicative DNA helicase; Provisional

Probab=96.96  E-value=0.015  Score=60.75  Aligned_cols=116  Identities=15%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCH--HHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKP--SQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~--~~~~~~~   89 (403)
                      +...++|.|.||+|||+++.++|..++. .|++|+++.++.-.......+  .+...+++.-... .....  ...+..+
T Consensus       225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a  302 (472)
T PRK06321        225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRI--ICSRSEVESKKISVGDLSGRDFQRIVSV  302 (472)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence            3478888999999999999999999874 589999999886554443333  2223334322111 11222  2234455


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      +..+.  +..+.|-|+|+. .++ .+...+..+.....  .-++|||.
T Consensus       303 ~~~l~--~~~~~idd~~~~-ti~-~i~~~~r~~~~~~~--~~lvvIDy  344 (472)
T PRK06321        303 VNEMQ--EHTLLIDDQPGL-KIT-DLRARARRMKESYD--IQFLIIDY  344 (472)
T ss_pred             HHHHH--cCCEEEeCCCCC-CHH-HHHHHHHHHHHhcC--CCEEEEcc
Confidence            55553  445666666653 322 22233333322211  12777776

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=96.96  E-value=0.0024  Score=65.12  Aligned_cols=148  Identities=16%  Similarity=0.256  Sum_probs=83.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ..|-..++.+=--||||++-.|.....-       ++.--.+....|.+ .+....|+.+-.......        +..-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~-------~~~Rem~~Q~LDsM-diERERGITIKaq~v~l~--------Yk~~   71 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGG-------LSEREMRAQVLDSM-DIERERGITIKAQAVRLN--------YKAK   71 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcC-------cChHHHHHHhhhhh-hhHhhcCceEEeeEEEEE--------EEeC
Confidence            3466677778888999999887754431       11101111112222 233344554321110000        0000


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      ..+.|-+-+|||||...+.-+...+|+      .|..++|||||+.|-   +..+....+...+.+. -|+||+|..+. 
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLA------ACEGalLvVDAsQGveAQTlAN~YlAle~~LeIi-PViNKIDLP~Ad  144 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLA------ACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLPAAD  144 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHh------hCCCcEEEEECccchHHHHHHHHHHHHHcCcEEE-EeeecccCCCCC
Confidence            015688999999999877655555543      247889999998774   4445555566666654 68999996532 


Q ss_pred             -hhHHHHHHHHhCCCe
Q 015657          170 -GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 -~~~~~~~~~~~g~pi  184 (403)
                       ......+.+..|++-
T Consensus       145 pervk~eIe~~iGid~  160 (603)
T COG0481         145 PERVKQEIEDIIGIDA  160 (603)
T ss_pred             HHHHHHHHHHHhCCCc
Confidence             234445555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
2j28_9	430	Model Of E. Coli Srp Bound To 70s Rncs Length = 430		1e-85
2xxa_A	433	The Crystal Structure Of The Signal Recognition Par		2e-85
2ffh_A	425	The Signal Sequence Binding Protein Ffh From Thermu		7e-79
2iy3_A	432	Structure Of The E. Coli Signal Recognition Particl		5e-69
3ndb_B	454	Crystal Structure Of A Signal Sequence Bound To The		5e-68
2v3c_C	432	Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna C		5e-68
3dm5_A	443	Structures Of Srp54 And Srp19, The Two Proteins Ass		2e-62
1rj9_B	300	Structure Of The Heterodimer Of The Conserved Gtpas		4e-58
1o87_A	297	A New Mggdp Complex Of The Ffh Ng Domain Length = 2		1e-57
2c03_A	297	Gdp Complex Of Srp Gtpase Ffh Ng Domain Length = 29		1e-57
1jpj_A	296	Gmppnp Complex Of Srp Gtpase Ng Domain Length = 296		3e-57
1qzw_A	440	Crystal Structure Of The Complete Core Of Archaeal		8e-57
3kl4_A	433	Recognition Of A Signal Peptide By The Signal Recog		9e-57
1ls1_A	295	T. Aquaticus Ffh Ng Domain At 1.1a Resolution Lengt		1e-56
1ffh_A	294	N And Gtpase Domains Of The Signal Sequence Recogni		2e-56
3ng1_A	294	N And Gtpase Domains Of The Signal Sequence Recogni		6e-56
2ng1_A	293	N And Gtpase Domains Of The Signal Sequence Recogni		7e-56
2j37_W	504	Model Of Mammalian Srp Bound To 80s Rncs Length = 5		2e-55
2qy9_A	309	Structure Of The Ng+1 Construct Of The E. Coli Srp		2e-43
2yhs_A	503	Structure Of The E. Coli Srp Receptor Ftsy Length =		2e-43
2xxa_B	302	The Crystal Structure Of The Signal Recognition Par		2e-43
1fts_A	295	Signal Recognition Particle Receptor From E. Coli L		3e-43
3dmd_B	328	Structures And Conformations In Solution Of The Sig		2e-40
3dm9_B	328	Structures And Conformations In Solution Of The Sig		7e-39
2og2_A	359	Crystal Structure Of Chloroplast Ftsy From Arabidop		3e-38
3b9q_A	302	The Crystal Structure Of Cpftsy From Arabidopsis Th		5e-38
4ak9_A	318	Structure Of Chloroplast Ftsy From Physcomitrella P		7e-38
1j8m_F	297	Signal Recognition Particle Conserved Gtpase Domain		1e-37
1j8y_F	297	Signal Recognition Particle Conserved Gtpase Domain		6e-37
1vma_A	306	Crystal Structure Of Cell Division Protein Ftsy (Tm		1e-35
2q9a_A	304	Structure Of Apo Ftsy Length = 304		3e-31
2cnw_D	284	Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy Len		4e-31
1okk_D	303	Homo-Heterodimeric Complex Of The Srp Gtpases Lengt		4e-31
2j7p_D	283	Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpa		4e-31
1zu4_A	320	Crystal Structure Of Ftsy From Mycoplasma Mycoides-		1e-30
1rj9_A	304	Structure Of The Heterodimer Of The Conserved Gtpas		4e-30
1hq1_A	105	Structural And Energetic Analysis Of Rna Recognitio		2e-13
2px0_A	296	Crystal Structure Of Flhf Complexed With GmppnpMG(2		3e-10
2pxb_A	102	Variant 2 Of Ribonucleoprotein Core Of The E. Coli		1e-09
3lqx_A	105	Srp Ribonucleoprotein Core Complexed With Cobalt He		1e-09
1mfq_C	129	Crystal Structure Analysis Of A Ternary S-Domain Co		4e-06
1qb2_A	109	Crystal Structure Of The Conserved Subdomain Of Hum		1e-05
2jqe_A	119	Soution Structure Of Af54 M-Domain Length = 119		6e-04

>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs Length = 430

Iteration: 1
 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/348 (48%), Positives = 230/348 (66%), Gaps = 7/348 (2%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
           MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI
Sbjct: 85  MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 144
Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
            QL  L EQVGV  + +    KP  I    L+EAK K  DV++VDTAGRL +D+AMMDE+
Sbjct: 145 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 204
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 205 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 264
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+  
Sbjct: 265 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 324
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
            + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT
Sbjct: 325 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 383
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
            +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +
Sbjct: 384 MKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 429

>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) Length = 433

Iteration: 1
 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/342 (49%), Positives = 228/342 (66%), Gaps = 7/342 (2%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
           MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI
Sbjct: 86  MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145
Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
            QL  L EQVGV  + +    KP  I    L+EAK K  DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265
Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+  
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325
Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMT 296
            + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMT 384
Query: 297 PEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
            +ER KPE++  S  R++R+A  SG   Q V++L+ Q   M+
Sbjct: 385 MKERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQ 424

>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus Aquaticus Length = 425

Iteration: 1
 Score =  290 bits (743), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 162/344 (47%), Positives = 231/344 (67%), Gaps = 13/344 (3%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPI   G  E+ E LEPFYP+R+AGRILGMGDV S  EK +    + +A +  K++   
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL--- 320
Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
                DFLKQ + + R+G  S ++G++PG+    P  ++  EK++K +EA++ +MTPEER
Sbjct: 321 --SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEER 374
Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
           + P +L  S  RRKR+A+ SG + Q+V++ +    +M+  MK+L
Sbjct: 375 KDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416

>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound To A Translating Ribosome Length = 432

Iteration: 1
 Score =  258 bits (659), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/330 (45%), Positives = 214/330 (64%), Gaps = 16/330 (4%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS- 239
           GKPI   G  E+ E LEPFYP+R+AGRILGMGD+ S +EK + +   E+ +++QKK+   
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDIESILEKVKGL---EEYDKIQKKMEDV 320
Query: 240 ----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAM 291
                     D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A 
Sbjct: 321 MEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAA 380
Query: 292 IEAMTPEEREKPELLAESPVRRKRVAQDSG 321
           + +MT +E E P ++ +S  R +R+A+ SG
Sbjct: 381 LNSMTYKELENPNIIDKS--RMRRIAEGSG 408

>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal Recognition Particle Length = 454

Iteration: 1
 Score =  254 bits (650), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/334 (41%), Positives = 206/334 (61%), Gaps = 8/334 (2%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +G E  +L     +  VILL G+QG GKTT +AKLA Y++K+G    L+A D YRPAA +
Sbjct: 85  LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE 144
Query: 61  QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
           QL  L E++ VP+Y   T  K P  I K+G+E+ KK   DV+I+DTAGR + +K +++E+
Sbjct: 145 QLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEM 202
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKE 178
           K +K + NP E++LV+D   GQ+A      F   +G  G+I+ TKLDG ++GG ALS   
Sbjct: 203 KQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVA 262
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
            +  PIK +G GE ++DLEPF P +   R+LGMGD+ S +EKA++ M  E  EE    IM
Sbjct: 263 ETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIM 321
Query: 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTP 297
              F  N+ + Q   +  MGSM +++ MIPG G   P ++    E  +K  + +I +MT 
Sbjct: 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTK 381
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
           EERE P+++  S +R  R+A+ SG TE  V +++
Sbjct: 382 EERENPKIIKASRIR--RIARGSGTTENDVREVL 413

>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex Of M. Jannaschii Length = 432

Iteration: 1
 Score =  254 bits (649), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/334 (41%), Positives = 206/334 (61%), Gaps = 8/334 (2%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +G E  +L     +  VILL G+QG GKTT +AKLA Y++K+G    L+A D YRPAA +
Sbjct: 85  LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE 144
Query: 61  QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
           QL  L E++ VP+Y   T  K P  I K+G+E+ KK   DV+I+DTAGR + +K +++E+
Sbjct: 145 QLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEM 202
Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKE 178
           K +K + NP E++LV+D   GQ+A      F   +G  G+I+ TKLDG ++GG ALS   
Sbjct: 203 KQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVA 262
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
            +  PIK +G GE ++DLEPF P +   R+LGMGD+ S +EKA++ M  E  EE    IM
Sbjct: 263 ETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIM 321
Query: 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTP 297
              F  N+ + Q   +  MGSM +++ MIPG G   P ++    E  +K  + +I +MT 
Sbjct: 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTK 381
Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
           EERE P+++  S +R  R+A+ SG TE  V +++
Sbjct: 382 EERENPKIIKASRIR--RIARGSGTTENDVREVL 413

>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling The Ribonucleic Core Of The Signal Recognition Particle From The Archaeon Pyrococcus Furiosus. Length = 443

Iteration: 1
 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 203/335 (60%), Gaps = 4/335 (1%)
Query: 12  KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
           K +PT++L+ G+QG GKTT  AKLA Y +K+G    +V  D +RP A  QL  L ++  +
Sbjct: 97  KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156
Query: 72  PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
            V+    E    ++AK+G++  K K VD++IVDTAGR + DKA+++E+K +  V++P EV
Sbjct: 157 EVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEV 216
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
           +LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GE
Sbjct: 217 ILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGE 276
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQ 250
           +++D+EPF P R   R+LG+GD+   +EK +E+ ++ E  EE  ++ +   F   D   Q
Sbjct: 277 KIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQ 336
Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAES 309
              + +MG + +++ MIPG+G   P  V    E+ LK  + ++++MT EE   PE++  S
Sbjct: 337 LEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIINYS 396
Query: 310 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
             R KR+A+ SG + + V +L+ Q  QM+   K++
Sbjct: 397 --RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429

>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase Domains Signal Recognition Particle (Ffh) And Its Receptor (Ftsy) Length = 300

Iteration: 1
 Score =  221 bits (564), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/217 (54%), Positives = 154/217 (70%), Gaps = 2/217 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSF 217
           GKPI   G  E+ E LEPFYP+R+AGRILGMGDV S 
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASL 300

>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain Length = 297

Iteration: 1
 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 153/214 (71%), Gaps = 2/214 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 214
           GKPI   G  E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDV 297

>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain Length = 297

Iteration: 1
 Score =  220 bits (560), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 153/214 (71%), Gaps = 2/214 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 214
           GKPI   G  E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDV 297

>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain Length = 296

Iteration: 1
 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/213 (54%), Positives = 152/213 (71%), Gaps = 2/213 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 213
           GKPI   G  E+ E LEPFYP+R+AGRILGMGD
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD 296

>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication Length = 440

Iteration: 1
 Score =  217 bits (553), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 197/332 (59%), Gaps = 16/332 (4%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
            GG+    V     P +I+L G+QG GKTT + KLA + KK+G    LVA DVYRPAA D
Sbjct: 90  FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD 149
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
           QL+ LG Q+GV VY       P +IAK+G++   K  +D++IVDTAGR     +  +++E
Sbjct: 150 QLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE 209
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
           +K++  VL P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS   
Sbjct: 210 MKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVV 269
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
            +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + +   E+ +++QKK+ 
Sbjct: 270 ATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGL---EEYDKIQKKME 326
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
                       D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   
Sbjct: 327 DVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWL 386
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSG 321
           A + +MT +E E P ++ +S  R +R+A+ SG
Sbjct: 387 AALNSMTYKELENPNIIDKS--RMRRIAEGSG 416

>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition Particle Length = 433

Iteration: 1
 Score =  217 bits (553), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 197/332 (59%), Gaps = 16/332 (4%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
            GG+    V     P +I+L G+QG GKTT + KLA + KK+G    LVA DVYRPAA D
Sbjct: 83  FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD 142
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
           QL+ LG Q+GV VY       P +IAK+G++   K  +D++IVDTAGR     +  +++E
Sbjct: 143 QLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE 202
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
           +K++  VL P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS   
Sbjct: 203 MKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVV 262
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
            +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + +   E+ +++QKK+ 
Sbjct: 263 ATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGL---EEYDKIQKKME 319
Query: 239 S-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIME 289
                       D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   
Sbjct: 320 DVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWL 379
Query: 290 AMIEAMTPEEREKPELLAESPVRRKRVAQDSG 321
           A + +MT +E E P ++ +S  R +R+A+ SG
Sbjct: 380 AALNSMTYKELENPNIIDKS--RMRRIAEGSG 409

>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution Length = 295

Iteration: 1
 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 212
           GKPI   G  E+ E LEPFYP+R+AGRILGMG
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295

>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 294

Iteration: 1
 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 151/212 (71%), Gaps = 2/212 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 85  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 142
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 143 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 202
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 203 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 262
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 212
           GKPI   G  E+ E LEPFYP+R+AGRILGMG
Sbjct: 263 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 294

>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 294

Iteration: 1
 Score =  214 bits (545), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 150/211 (71%), Gaps = 2/211 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGM 211
           GKPI   G  E+ E LEPFYP+R+AGRILGM
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGM 294

>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 293

Iteration: 1
 Score =  214 bits (545), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 150/211 (71%), Gaps = 2/211 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE + L   K R  +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 85  LGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 142
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 143 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 202
Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 203 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 262
Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGM 211
           GKPI   G  E+ E LEPFYP+R+AGRILGM
Sbjct: 263 GKPIYFAGVSEKPEGLEPFYPERLAGRILGM 293

>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs Length = 504

Iteration: 1
 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 197/350 (56%), Gaps = 9/350 (2%)
Query: 12  KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
           K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A DQL     +  +
Sbjct: 98  KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query: 72  PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
           P Y + TE+ P  IA +G+E+ K +N +++IVDT+GR + + ++ +E+  V   + P  +
Sbjct: 158 PFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNI 217
Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
           + V+DA  GQ   A    F  ++ +   I+TKLDG ++GG ALS    +  PI  +G GE
Sbjct: 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query: 192 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 251
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q 
Sbjct: 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQF 336
Query: 252 RTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LL 306
           + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + 
Sbjct: 337 QNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVF 396
Query: 307 AESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSL 353
           ++ P R +RVA+ SG + + V +L+ Q     QM  +M  + G+ +GG +
Sbjct: 397 SKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 446

>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp Receptor Ftsy Length = 309

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 6/194 (3%)
Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           P VIL+ G+ GVGKTT   KLA   ++QGKS ML AGD +R AA++QL + G++  +PV 
Sbjct: 99  PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 158
Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
              T    + +    ++ AK +N+DV+I DTAGRLQ    +M+ELK + RV+       P
Sbjct: 159 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 218
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
            EV+L +DA TGQ A +    F+  +G+TG  LTKLDG ++GG   SV +  G PI+ +G
Sbjct: 219 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 278
Query: 189 RGERMEDLEPFYPD 202
            GER+EDL PF  D
Sbjct: 279 VGERIEDLRPFKAD 292

>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy Length = 503

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 124/205 (60%), Gaps = 6/205 (2%)
Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           P VIL+ G+ GVGKTT   KLA   ++QGKS ML AGD +R AA++QL + G++  +PV 
Sbjct: 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 352
Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
              T    + +    ++ AK +N+DV+I DTAGRLQ    +M+ELK + RV+       P
Sbjct: 353 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 412
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
            EV+L +DA TGQ A +    F+  +G+TG  LTKLDG ++GG   SV +  G PI+ +G
Sbjct: 413 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 472
Query: 189 RGERMEDLEPFYPDRMAGRILGMGD 213
            GER+EDL PF  D     +    D
Sbjct: 473 VGERIEDLRPFKADDFIEALFARED 497

>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) Length = 302

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 6/194 (3%)
Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           P VIL+ G+ GVGKTT   KLA   ++QGKS ML AGD +R AA++QL + G++  +PV 
Sbjct: 98  PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 157
Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
              T    + +    ++ AK +N+DV+I DTAGRLQ    +M+ELK + RV+       P
Sbjct: 158 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 217
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
            EV+L +DA TGQ A +    F+  +G+TG  LTKLDG ++GG   SV +  G PI+ +G
Sbjct: 218 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 277
Query: 189 RGERMEDLEPFYPD 202
            GER+EDL PF  D
Sbjct: 278 VGERIEDLRPFKAD 291

>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli Length = 295

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 6/194 (3%)
Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           P VIL+ G+ GVGKTT   KLA   ++QGKS ML AGD +R AA++QL + G++  +PV 
Sbjct: 93  PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 152
Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
              T    + +    ++ AK +N+DV+I DTAGRLQ    +M+ELK + RV+       P
Sbjct: 153 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 212
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
            EV+L +DA TGQ A +    F+  +G+TG  LTKLDG ++GG   SV +  G PI+ +G
Sbjct: 213 HEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIG 272
Query: 189 RGERMEDLEPFYPD 202
            GER+EDL PF  D
Sbjct: 273 VGERIEDLRPFKAD 286

>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus Length = 328

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 115/197 (58%)
Query: 14  RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
           +P VI+  G  G GKTT  AKLAN+LK  G S ++ A D +R  AI+QL    +++GV V
Sbjct: 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187
Query: 74  YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
                   P+ +A   ++ AK + +DVV++DTAGR + ++ +MDE+K + RV  P  V+ 
Sbjct: 188 IKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIF 247
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
           V DA+ G         FN  + I G ILTKLD D+RGGAALS+  V   PI  VG G+  
Sbjct: 248 VGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307
Query: 194 EDLEPFYPDRMAGRILG 210
           +DL PF  +    RI G
Sbjct: 308 DDLRPFEKEWFLERIFG 324

>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus Length = 328

Iteration: 1
 Score =  157 bits (398), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 112/197 (56%)
Query: 14  RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 73
           +P VI   G  G GKTT  AKLAN+LK  G S ++ A D +R  AI+QL    +++GV V
Sbjct: 128 KPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187
Query: 74  YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
                   P+ +A   ++ AK + +DVV++DTAGR + ++ + DE K + RV  P  V+ 
Sbjct: 188 IKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLXDEXKKIARVTKPNLVIF 247
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
           V DA+ G         FN  + I G ILTKLD D+RGGAALS+  V   PI  VG G+  
Sbjct: 248 VGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307
Query: 194 EDLEPFYPDRMAGRILG 210
           +DL PF  +    RI G
Sbjct: 308 DDLRPFEKEWFLERIFG 324

>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis Thaliana Length = 359

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
           +EL     +P VI++ G+ G GKTT   KLA+ LK +G   ++ AGD +R AA DQL I 
Sbjct: 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 207
Query: 66  GEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
            E+ G  +  A G + K + +  + ++  K++  DVV+ DT+GRL  + ++M+EL   K+
Sbjct: 208 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKK 267
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
            +       P E+LLV+D  TG         FN  +GITG ILTKLDG +RGG  +SV E
Sbjct: 268 AVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVE 327
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 209
             G P+K +G GE +EDL+PF P+     I 
Sbjct: 328 ELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 358

>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana Length = 302

Iteration: 1
 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
           +EL     +P VI++ G+ G GKTT   KLA+ LK +G   ++ AGD +R AA DQL I 
Sbjct: 91  TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 150
Query: 66  GEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
            E+ G  +  A G + K + +  + ++  K++  DVV+ DT+GRL  + ++M+EL   K+
Sbjct: 151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKK 210
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
            +       P E+LLV+D  TG         FN  +GITG ILTKLDG +RGG  +SV E
Sbjct: 211 AVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVE 270
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 209
             G P+K +G GE +EDL+PF P+     I 
Sbjct: 271 ELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 301

>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens Length = 318

Iteration: 1
 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 7/201 (3%)
Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
           +EL    SRP V+++ G+ G GKTT   KLAN  KK+G   ++ AGD +R AA +QL + 
Sbjct: 107 TELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVW 166
Query: 66  GEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
            ++ G  +  A G + +P+ +  Q +  A +++ DVV+ DT+GRL  +  +M+EL+  KR
Sbjct: 167 AQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKR 226
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
            ++      P EVLLV+D  TG    A    FN  IG+TG ILTKLDG +RGG  +SV +
Sbjct: 227 AVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVD 286
Query: 179 VSGKPIKLVGRGERMEDLEPF 199
               P+K VG GE ++DL+PF
Sbjct: 287 ELSIPVKFVGVGEGIDDLQPF 307

>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From A. Ambivalens Length = 297

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 131/210 (62%), Gaps = 2/210 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
            GG+    V     P VI+L G+QG GKTT + KLA + KK+G    LV  DVYRPAA++
Sbjct: 84  FGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
           QL  LG+Q+GVPVY    E     IAK+G+E+   + ++++IVDTAGR     + A+++E
Sbjct: 144 QLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEE 203
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
           +K++   + P EV LV+DA  GQ+A  L + FN    I   I+TK+DG ++GG ALS   
Sbjct: 204 MKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVA 263
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRI 208
            +G  IK +G GE++++LE F P R   R+
Sbjct: 264 ATGATIKFIGTGEKIDELEVFNPRRFVARL 293

>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From A. Ambivalens T112a Mutant Length = 297

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 130/210 (61%), Gaps = 2/210 (0%)
Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
            GG+    V     P VI+L G+QG GK T + KLA + KK+G    LV  DVYRPAA++
Sbjct: 84  FGGDKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALE 143
Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDE 118
           QL  LG+Q+GVPVY    E     IAK+G+E+   + ++++IVDTAGR     + A+++E
Sbjct: 144 QLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEE 203
Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
           +K++   + P EV LV+DA  GQ+A  L + FN    I   I+TK+DG ++GG ALS   
Sbjct: 204 MKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVA 263
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRI 208
            +G  IK +G GE++++LE F P R   R+
Sbjct: 264 ATGATIKFIGTGEKIDELEVFNPRRFVARL 293

>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570) From Thermotoga Maritima At 1.60 A Resolution Length = 306

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 6/194 (3%)
Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           P VI++ G+ G GKTT   KLA     +GKS +L A D +R AAI+QL I GE+VG  V 
Sbjct: 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 163
Query: 75  TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 128
           +      P+ +A   +  A  +N DVVI+DTAGRL   K +M+EL+ V RV+       P
Sbjct: 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAP 223
Query: 129 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 188
            E LLV+DA TGQ        F   + +TG ILTKLDG ++GG  L++    G PIK +G
Sbjct: 224 HETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIG 283
Query: 189 RGERMEDLEPFYPD 202
            GE+ EDL PF P+
Sbjct: 284 VGEKAEDLRPFDPE 297

>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy Length = 304

Iteration: 1
 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 28  KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
           KTT  AKL  Y +  GK  M  AGD +R A   QL   G+++ +PV        P+ +A 
Sbjct: 115 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 174
Query: 88  QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
             ++  K +  D++ VDTAGRL     +M+ELK VKR +       P EV LV+DA+TGQ
Sbjct: 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 234
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
                   F+  +G+TG I+TKLDG ++GG  + +      PIK VG GE  +DL+PF P
Sbjct: 235 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 294
Query: 202 D 202
           +
Sbjct: 295 E 295

>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy Length = 284

Iteration: 1
 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 28  KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
           KTT  AKL  Y +  GK  M  AGD +R A   QL   G+++ +PV        P+ +A 
Sbjct: 95  KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 154
Query: 88  QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
             ++  K +  D++ VDTAGRL     +M+ELK VKR +       P EV LV+DA+TGQ
Sbjct: 155 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 214
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
                   F+  +G+TG I+TKLDG ++GG  + +      PIK VG GE  +DL+PF P
Sbjct: 215 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 274
Query: 202 DRMAGRIL 209
           +     +L
Sbjct: 275 EAFVEALL 282

>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases Length = 303

Iteration: 1
 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 28  KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
           KTT  AKL  Y +  GK  M  AGD +R A   QL   G+++ +PV        P+ +A 
Sbjct: 114 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 173
Query: 88  QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
             ++  K +  D++ VDTAGRL     +M+ELK VKR +       P EV LV+DA+TGQ
Sbjct: 174 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 233
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
                   F+  +G+TG I+TKLDG ++GG  + +      PIK VG GE  +DL+PF P
Sbjct: 234 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 293
Query: 202 D 202
           +
Sbjct: 294 E 294

>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh And Ftsy Length = 283

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 28  KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
           KTT  AKL  Y +  GK  M  AGD +R A   QL   G+++ +PV        P+ +A 
Sbjct: 94  KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 153
Query: 88  QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
             ++  K +  D++ VDTAGRL     +M+ELK VKR +       P EV LV+DA+TGQ
Sbjct: 154 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 213
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
                   F+  +G+TG I+TKLDG ++GG  + +      PIK VG GE  +DL+PF P
Sbjct: 214 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 273
Query: 202 DRMAGRIL 209
           +     +L
Sbjct: 274 EAFVEALL 281

>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space Group P21212 Length = 320

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 117/205 (57%), Gaps = 12/205 (5%)
Query: 10  FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-----VI 64
           F ++R  + +L G+ G GKTT  AK+ANY  + G   ++ A D +R  A  QL       
Sbjct: 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTR 159
Query: 65  LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 124
           L  +V + V        P+ +    +++AK++N D++++DTAGRLQ    +M EL+ + +
Sbjct: 160 LNNKVDL-VKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNK 218
Query: 125 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
           ++       P EVLLV+DA TGQ        F+    ++G ILTK+D  S+GG  L++KE
Sbjct: 219 IIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKE 278
Query: 179 VSGKPIKLVGRGERMEDLEPFYPDR 203
           +   PIK++G GE+++DL  F  D+
Sbjct: 279 LLNIPIKMIGVGEKVDDLLAFDIDQ 303

>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase Domains Signal Recognition Particle (Ffh) And Its Receptor (Ftsy) Length = 304

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 6/181 (3%)
Query: 28  KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 87
           KTT  AKL  Y +  GK  M  AGD +R A   QL   G+++ +PV         + +A 
Sbjct: 115 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAY 174
Query: 88  QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 141
             ++  K +  D++ VDTAGRL     +M+ELK VKR +       P EV LV+DA+TGQ
Sbjct: 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 234
Query: 142 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 201
                   F+  +G+TG I+TKLDG ++GG  + +      PIK VG GE  +DL+PF P
Sbjct: 235 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 294
Query: 202 D 202
           +
Sbjct: 295 E 295

>pdb|1HQ1|A Chain A, Structural And Energetic Analysis Of Rna Recognition By A Universally Conserved Protein From The Signal Recognition Particle Length = 105

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 5/99 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 299
           FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT +E
Sbjct: 2   FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKE 60
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 338
           R KPE++  S  R++R+A  SG   Q V++L+ Q   M+
Sbjct: 61  RAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQ 97

>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) Length = 296

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 18  ILLAGLQGVGKTTVSAKLA--NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 75
           I+L G  G GKTT  AKLA  + L+K  K    +  D YR AA++QL    E +  P+  
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEV 166
Query: 76  AGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 133
             T        K+  ++AK+     D V VDTAGR   D   +DELK+     +  +  L
Sbjct: 167 CYT--------KEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFL 218
Query: 134 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 193
           V+ A    E    +      + +   I TK+D  +  G+  ++   S   +  +  G+ +
Sbjct: 219 VLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNV 278
Query: 194 -EDLEPFYP 201
            ED++   P
Sbjct: 279 PEDIQTVSP 287

>pdb|2PXB|A Chain A, Variant 2 Of Ribonucleoprotein Core Of The E. Coli Signal Recognition Particle Length = 102

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 299
           FD NDFL+Q R +   G  + + G +PG G+I P  V+    +K L   EA+I + T +E
Sbjct: 1   FDLNDFLEQLRQMKNXGGXASLXGKLPGXGQI-PDNVKSQXDDKVLVRXEAIINSXTXKE 59
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
           R KPE++  S  R++R+A  SG   Q V++L+ Q 
Sbjct: 60  RAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 92

>pdb|3LQX|A Chain A, Srp Ribonucleoprotein Core Complexed With Cobalt Hexammine Length = 105

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 299
           FD NDFL+Q R     G  + + G +PG G+I P  V+    +K L   EA+I + T +E
Sbjct: 2   FDLNDFLEQLRQXKNXGGXASLXGKLPGXGQI-PDNVKSQXDDKVLVRXEAIINSXTXKE 60
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
           R KPE++  S  R++R+A  SG   Q V++L+ Q 
Sbjct: 61  RAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 93

>pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary S-Domain Complex Of Human Signal Recognition Particle Length = 129

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTP 297
             F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  
Sbjct: 13  GQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMND 72
Query: 298 EEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 347
           +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct: 73  QELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 125

>pdb|1QB2|A Chain A, Crystal Structure Of The Conserved Subdomain Of Human Protein Srp54m At 2.1a Resolution: Evidence For The Mechanism Of Signal Peptide Binding Length = 109

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEE 299
           F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E
Sbjct: 2   FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE 61
Query: 300 REKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQL 334
            +  +   + ++ P R +RVA+ SG + + V +L+ Q 
Sbjct: 62  LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQY 99

>pdb|2JQE|A Chain A, Soution Structure Of Af54 M-Domain Length = 119

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIP-GMGKITPAQVRE-AEKSLKIMEAMIEAMTPEE 299
           F   D  KQ   + +MG + ++  M+P G+G      V E  ++ +K    ++++MT EE
Sbjct: 10  FTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEE 69
Query: 300 REKPELLAESPVRRKRVAQDSGKTEQQVSQLV 331
              P+++  S +R  R+A  SG + Q+V +L+
Sbjct: 70  LLNPKIIDSSRIR--RIAIGSGTSPQEVKELL 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	1e-179
2xxa_A	433	Signal recognition particle protein; protein trans	1e-178
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	1e-175
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	1e-175
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	1e-173
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	1e-172
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	1e-125
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	1e-125
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	9e-77
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	3e-75
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	2e-67
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	8e-67
2og2_A	359	Putative signal recognition particle receptor; nuc	3e-65
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	4e-65
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	4e-65
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	3e-62
1mfq_C	129	SRP54, signal recognition particle 54KDA protein;	3e-32
2jqe_A	119	SRP54, signal recognition 54 kDa protein; AF54, st	4e-31
1hq1_A	105	Signal recognition particle protein; protein-RNA c	2e-28
1qb2_A	109	SRP54, human signal recognition particle 54 KD pro	3e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1dul_A	69	Signal recognition particle protein (fifty-four ho	5e-15
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	8e-07
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	9e-06
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	6e-05
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	1e-04
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	1e-04
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	2e-04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-04
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	3e-04
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-04
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	3e-04
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	4e-04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	4e-04
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	6e-04
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	7e-04
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	8e-04
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	8e-04

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Length = 433

 Score =  504 bits (1300), Expect = e-179
 Identities = 129/352 (36%), Positives = 204/352 (57%), Gaps = 10/352 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
            GG+    V     P +I+L G+QG GKTT + KLA + KK+G    LVA DVYRPAA D
Sbjct: 83  FGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD 142

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDE 118
           QL+ LG Q+GV VY       P +IAK+G++   K  +D++IVDTAGR        +++E
Sbjct: 143 QLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE 202

Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
           +K++  VL P +V+LV+DA  GQ+A  L + F+    I   I+TK+DG ++GG ALS   
Sbjct: 203 MKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVV 262

Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
            +G  IK +G GE++++LE F   R   RILGMGD+ S +EK + + + +  ++  + +M
Sbjct: 263 ATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVM 322

Query: 239 SAN--FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMI 292
                    D   Q   + +MG +S+V+  IPG+G + P     Q++  E+ ++   A +
Sbjct: 323 EGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAAL 382

Query: 293 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
            +MT +E E P ++ +S  R +R+A+ SG   ++V +L+     M   +K +
Sbjct: 383 NSMTYKELENPNIIDKS--RMRRIAEGSGLEVEEVRELLEWYNNMNRLLKMV 432

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Length = 433

 Score =  501 bits (1292), Expect = e-178
 Identities = 169/349 (48%), Positives = 230/349 (65%), Gaps = 5/349 (1%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAI 59
           MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI
Sbjct: 86  MGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145

Query: 60  DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
            QL  L EQVGV  + +    KP  I    L+EAK K  DV++VDTAGRL +D+AMMDE+
Sbjct: 146 KQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI 205

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ +
Sbjct: 206 KQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHI 265

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 239
           +GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+  
Sbjct: 266 TGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKK 325

Query: 240 AN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTP 297
            + FD NDFL+Q R +  MG M+ ++G +PGMG+I    + +  +K L  MEA+I +MT 
Sbjct: 326 GDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTM 385

Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346
           +ER KPE++  S  R++R+A  SG   Q V++L+ Q   M+  MK +  
Sbjct: 386 KERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMKK 432

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Length = 443

 Score =  494 bits (1275), Expect = e-175
 Identities = 129/348 (37%), Positives = 205/348 (58%), Gaps = 5/348 (1%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +G E   +   K +PT++L+ G+QG GKTT  AKLA Y +K+G    +V  D +RP A  
Sbjct: 87  LGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH 145

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL  L ++  + V+    E    ++AK+G++  K K VD++IVDTAGR + DKA+++E+K
Sbjct: 146 QLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMK 205

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +  V++P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +
Sbjct: 206 QISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAAT 265

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQE-VMQQEDAEEMQKKIMS 239
           G PIK +G GE+++D+EPF P R   R+LG+GD+   +EK +E   + E  EE  ++ + 
Sbjct: 266 GAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLR 325

Query: 240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPE 298
             F   D   Q   + +MG + +++ MIPG+G   P   +   E+ LK  + ++++MT E
Sbjct: 326 GKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEE 385

Query: 299 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 346
           E   PE++  S  R KR+A+ SG + + V +L+ Q  QM+   K++  
Sbjct: 386 ELLNPEIINYS--RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSMNK 431

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Length = 425

 Score =  493 bits (1271), Expect = e-175
 Identities = 160/351 (45%), Positives = 228/351 (64%), Gaps = 13/351 (3%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE    V       +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGEARLPVLKD--RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
           GKPI   G  E+ E LEPFYP+R+AGRILGMGDV S  EK +    + +A +  K+    
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKE---- 319

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEER 300
                DFLKQ + + R+G  S ++G++PG+ +     ++  EK++K +EA++ +MTPEER
Sbjct: 320 -LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQ----GLKVDEKAIKRLEAIVLSMTPEER 374

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGG 351
           + P +L  S  RRKR+A+ SG + Q+V++ +    +M+  MK+L      G
Sbjct: 375 KDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLEKKKGRG 423

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Length = 432

 Score =  489 bits (1261), Expect = e-173
 Identities = 140/347 (40%), Positives = 208/347 (59%), Gaps = 8/347 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +G E  +L     +  VILL G+QG GKTT +AKLA Y++K+G    L+A D YRPAA +
Sbjct: 85  LGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE 144

Query: 61  QLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
           QL  L E++ VP+Y   T  K P  I K+G+E+ KK   DV+I+DTAGR + +K +++E+
Sbjct: 145 QLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA--DVLIIDTAGRHKEEKGLLEEM 202

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA-ILTKLDGDSRGGAALSVKE 178
           K +K + NP E++LV+D   GQ+A      F   +G  G+ I+TKLDG ++GG ALS   
Sbjct: 203 KQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVA 262

Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM 238
            +  PIK +G GE ++DLEPF P +   R+LGMGD+ S +EKA++++  E  EE    IM
Sbjct: 263 ETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV-DEKTEESIDAIM 321

Query: 239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTP 297
              F  N+ + Q   +  MGSM +++ MIPG G   P       E  +K  + +I +MT 
Sbjct: 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTK 381

Query: 298 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
           EERE P+++  S  R +R+A+ SG TE  V +++      +  +  L
Sbjct: 382 EERENPKIIKAS--RIRRIARGSGTTENDVREVLRYYETTKNAIDKL 426

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score =  490 bits (1264), Expect = e-172
 Identities = 114/380 (30%), Positives = 201/380 (52%), Gaps = 9/380 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +   V      K +  VI+  GLQG GKTT  +KLA Y +++G    L+  D +R  A D
Sbjct: 87  VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD 146

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL     +  +P Y + TE+ P  IA +G+E+ K +N +++IVDT+GR + + ++ +E+ 
Sbjct: 147 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML 206

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            V   + P  ++ V+DA  GQ   A    F  ++ +   I+TKLDG ++GG ALS    +
Sbjct: 207 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT 266

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA 240
             PI  +G GE ++D EPF       ++LGMGD+   ++K  E+ + +D E + +K+   
Sbjct: 267 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALIEKLKHG 325

Query: 241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ--VREAEKSLKIMEAMIEAMTPE 298
            F   D  +Q + + +MG  S+++GMIPG G    ++   +E+   LK +  ++++M  +
Sbjct: 326 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQ 385

Query: 299 EREKPELL---AESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR---VRMKNLMGVMEGGS 352
           E +  +     ++ P R +RVA+ SG + + V +L+ Q  +      +M  + G+ +GG 
Sbjct: 386 ELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGD 445

Query: 353 LPALSNLEDALKSEQKAPPG 372
           +    +     K  Q+    
Sbjct: 446 MSKNVSQSQMAKLNQQMAKM 465

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Length = 297

 Score =  362 bits (933), Expect = e-125
 Identities = 91/212 (42%), Positives = 130/212 (61%), Gaps = 2/212 (0%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
            GG+    V     P VI+L G+QG GKTT + KLA + KK+G    LV  DVYRPAA++
Sbjct: 84  FGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALE 143

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDE 118
           QL  LG+Q+GVPVY    E     IAK+G+E+   + ++++IVDTAGR       A+++E
Sbjct: 144 QLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEE 203

Query: 119 LKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 178
           +K++   + P EV LV+DA  GQ+A  L + FN    I   I+TK+DG ++GG ALS   
Sbjct: 204 MKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVA 263

Query: 179 VSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210
            +G  IK +G GE++++LE F P R   R+  
Sbjct: 264 ATGATIKFIGTGEKIDELEVFNPRRFVARLHH 295

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Length = 295

 Score =  362 bits (931), Expect = e-125
 Identities = 114/212 (53%), Positives = 148/212 (69%), Gaps = 2/212 (0%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +GGE    V       +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +
Sbjct: 86  LGGEARLPVLKD--RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL +LGE+VGVPV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL 
Sbjct: 144 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
            +K VL P EVLLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+
Sbjct: 204 RLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263

Query: 181 GKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 212
           GKPI   G  E+ E LEPFYP+R+AGRILGMG
Sbjct: 264 GKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Length = 328

 Score =  240 bits (614), Expect = 9e-77
 Identities = 84/207 (40%), Positives = 119/207 (57%)

Query: 4   EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
           ++ E +    +P VI+  G  G GKTT  AKLAN+LK  G S ++ A D +R  AI+QL 
Sbjct: 118 DLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLE 177

Query: 64  ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 123
              +++GV V        P+ +A   ++ AK + +DVV++DTAGR + ++ +MDE+K + 
Sbjct: 178 EHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIA 237

Query: 124 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 183
           RV  P  V+ V DA+ G         FN  + I G ILTKLD D+RGGAALS+  V   P
Sbjct: 238 RVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAP 297

Query: 184 IKLVGRGERMEDLEPFYPDRMAGRILG 210
           I  VG G+  +DL PF  +    RI G
Sbjct: 298 ILFVGVGQGYDDLRPFEKEWFLERIFG 324

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Length = 296

 Score =  234 bits (600), Expect = 3e-75
 Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 12/210 (5%)

Query: 4   EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLAN-YLKKQGKSCMLVAGDVYRPAAIDQL 62
             ++          I+L G  G GKTT  AKLA   + ++ K    +  D YR AA++QL
Sbjct: 94  PSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQL 153

Query: 63  VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELK 120
               E +  P+    T        K+  ++AK+     D V VDTAGR   D   +DELK
Sbjct: 154 KTYAELLQAPLEVCYT--------KEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELK 205

Query: 121 DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS 180
           +     +  +  LV+ A    E    +      + +   I TK+D  +  G+  ++   S
Sbjct: 206 ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAES 265

Query: 181 GKPIKLVGRGERM-EDLEPFYPDRMAGRIL 209
              +  +  G+ + ED++   P      + 
Sbjct: 266 KIGVGFMTNGQNVPEDIQTVSPLGFVRMLC 295

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Length = 306

 Score =  215 bits (549), Expect = 2e-67
 Identities = 88/206 (42%), Positives = 118/206 (57%), Gaps = 6/206 (2%)

Query: 3   GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 62
              ++L      P VI++ G+ G GKTT   KLA     +GKS +L A D +R AAI+QL
Sbjct: 92  NFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQL 151

Query: 63  VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122
            I GE+VG  V +      P+ +A   +  A  +N DVVI+DTAGRL   K +M+EL+ V
Sbjct: 152 KIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKV 211

Query: 123 KRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 176
            RV+       P E LLV+DA TGQ        F   + +TG ILTKLDG ++GG  L++
Sbjct: 212 HRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAI 271

Query: 177 KEVSGKPIKLVGRGERMEDLEPFYPD 202
               G PIK +G GE+ EDL PF P+
Sbjct: 272 ARELGIPIKFIGVGEKAEDLRPFDPE 297

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Length = 302

 Score =  213 bits (545), Expect = 8e-67
 Identities = 83/208 (39%), Positives = 121/208 (58%), Gaps = 7/208 (3%)

Query: 2   GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 61
               +EL     +P VI++ G+ G GKTT   KLA+ LK +G   ++ AGD +R AA DQ
Sbjct: 87  KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQ 146

Query: 62  LVILGEQVGVPVYTAGTE-VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           L I  E+ G  +  A  +  K + +  + ++  K++  DVV+ DT+GRL  + ++M+EL 
Sbjct: 147 LEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI 206

Query: 121 DVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 174
             K+ +       P E+LLV+D  TG         FN  +GITG ILTKLDG +RGG  +
Sbjct: 207 ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVV 266

Query: 175 SVKEVSGKPIKLVGRGERMEDLEPFYPD 202
           SV E  G P+K +G GE +EDL+PF P+
Sbjct: 267 SVVEELGIPVKFIGVGEAVEDLQPFDPE 294

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Length = 359

 Score =  211 bits (539), Expect = 3e-65
 Identities = 83/208 (39%), Positives = 121/208 (58%), Gaps = 7/208 (3%)

Query: 2   GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 61
               +EL     +P VI++ G+ G GKTT   KLA+ LK +G   ++ AGD +R AA DQ
Sbjct: 144 KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQ 203

Query: 62  LVILGEQVGVPVYTAGTE-VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           L I  E+ G  +  A  +  K + +  + ++  K++  DVV+ DT+GRL  + ++M+EL 
Sbjct: 204 LEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI 263

Query: 121 DVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 174
             K+ +       P E+LLV+D  TG         FN  +GITG ILTKLDG +RGG  +
Sbjct: 264 ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVV 323

Query: 175 SVKEVSGKPIKLVGRGERMEDLEPFYPD 202
           SV E  G P+K +G GE +EDL+PF P+
Sbjct: 324 SVVEELGIPVKFIGVGEAVEDLQPFDPE 351

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Length = 304

 Score =  208 bits (533), Expect = 4e-65
 Identities = 78/208 (37%), Positives = 114/208 (54%), Gaps = 6/208 (2%)

Query: 1   MGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID 60
           +G    +    + +  V+L+ G+ GVGKTT  AKL  Y +  GK  M  AGD +R A   
Sbjct: 88  LGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGT 147

Query: 61  QLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK 120
           QL   G+++ +PV         + +A   ++  K +  D++ VDTAGRL     +M+ELK
Sbjct: 148 QLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELK 207

Query: 121 DVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 174
            VKR +       P EV LV+DA+TGQ        F+  +G+TG I+TKLDG ++GG  +
Sbjct: 208 KVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLI 267

Query: 175 SVKEVSGKPIKLVGRGERMEDLEPFYPD 202
            +      PIK VG GE  +DL+PF P+
Sbjct: 268 PIVRTLKVPIKFVGVGEGPDDLQPFDPE 295

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Length = 320

 Score =  209 bits (535), Expect = 4e-65
 Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 10/209 (4%)

Query: 4   EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
           +   + F ++R  + +L G+ G GKTT  AK+ANY  + G   ++ A D +R  A  QL 
Sbjct: 94  KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLE 153

Query: 64  ILGEQ---VGVPVYTAGTE-VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL 119
              +      V +  A      P+ +    +++AK++N D++++DTAGRLQ    +M EL
Sbjct: 154 EWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAEL 213

Query: 120 KDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 173
           + + +++       P EVLLV+DA TGQ        F+    ++G ILTK+D  S+GG  
Sbjct: 214 EKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIG 273

Query: 174 LSVKEVSGKPIKLVGRGERMEDLEPFYPD 202
           L++KE+   PIK++G GE+++DL  F  D
Sbjct: 274 LAIKELLNIPIKMIGVGEKVDDLLAFDID 302

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503

 Score =  207 bits (529), Expect = 3e-62
 Identities = 90/214 (42%), Positives = 125/214 (58%), Gaps = 6/214 (2%)

Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
             L      P VIL+ G+ GVGKTT   KLA   ++QGKS ML AGD +R AA++QL + 
Sbjct: 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVW 343

Query: 66  GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
           G++  +PV    T    + +    ++ AK +N+DV+I DTAGRLQ    +M+ELK + RV
Sbjct: 344 GQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRV 403

Query: 126 LN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           +       P EV+L +DA TGQ A +    F+  +G+TG  LTKLDG ++GG   SV + 
Sbjct: 404 MKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQ 463

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 213
            G PI+ +G GER+EDL PF  D     +    D
Sbjct: 464 FGIPIRYIGVGERIEDLRPFKADDFIEALFARED 497

>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1 Length = 129

 Score =  117 bits (296), Expect = 3e-32
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 230 AEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKI 287
                       F   D  +Q + + +MG  S+++GMIPG G         +E+   LK 
Sbjct: 3   GSHHHHHHKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKK 62

Query: 288 MEAMIEAMTPEEREKPELL---AESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
           +  ++++M  +E +  +     ++ P R +RVA+ SG + + V +L+ Q  +    +K  
Sbjct: 63  LMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKK- 121

Query: 345 MGVMEG 350
           MG ++G
Sbjct: 122 MGGIKG 127

>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus} Length = 119

 Score =  114 bits (287), Expect = 4e-31
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 235 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMI 292
             +    F   D  KQ   + +MG + ++  M+P    +      +   ++ +K    ++
Sbjct: 3   GTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIM 62

Query: 293 EAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGS 352
           ++MT EE   P+++  S  R +R+A  SG + Q+V +L+     M+  MK     M+   
Sbjct: 63  DSMTEEELLNPKIIDSS--RIRRIAIGSGTSPQEVKELLNYYKTMKNLMKK----MKKNK 116

Query: 353 LP 354
           LP
Sbjct: 117 LP 118

>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A Length = 105

 Score =  106 bits (267), Expect = 2e-28
 Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEER 300
           FD NDFL+Q R +  MG M+ ++G +PGMG+I    + +  +K L  MEA+I +MT +ER
Sbjct: 2   FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKER 61

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
            KPE++  S  R++R+A  SG   Q V++L+ Q   M+  MK +
Sbjct: 62  AKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 103

>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W Length = 109

 Score =  103 bits (258), Expect = 3e-27
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE--AEKSLKIMEAMIEAMTPEE 299
           F   D  +Q + + +MG  S+++GMIPG G    ++  E  +   LK +  ++++M  +E
Sbjct: 2   FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE 61

Query: 300 REKPELL---AESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
            +  +     ++ P R +RVA+ SG + + V +L+ Q  +    +K +
Sbjct: 62  LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.8 bits (188), Expect = 3e-15
 Identities = 50/363 (13%), Positives = 111/363 (30%), Gaps = 100/363 (27%)

Query: 14  RP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM------LVAGDVYRPAAI-DQLVIL 65
           RP   +L+ G+ G GKT V+  +    K Q    M      L   +   P  + + L  L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQ--CKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 66  GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKA------MMDEL 119
             Q+  P +T+ ++   S   K  +   + +           RL   K       ++  +
Sbjct: 206 LYQI-DPNWTSRSD--HSSNIKLRIHSIQAELR---------RLLKSKPYENCLLVLLNV 253

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           ++ K            +A        L+TT   ++                     +   
Sbjct: 254 QNAK----------AWNAFNLS-CKILLTTRFKQV------------------TDFLSAA 284

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK---- 235
           +   I L              PD          +V S + K  +   Q+   E+      
Sbjct: 285 TTTHISLD------HHSMTLTPD----------EVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 236 --KIMSANF-DFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA-------EKSL 285
              I++ +  D        + V     ++ +I     +  + PA+ R+          S 
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCD-KLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 286 KIMEAMIE----AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 341
            I   ++      +   +     ++     +   V +     ++    + +   +++V++
Sbjct: 386 HIPTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQP---KESTISIPSIYLELKVKL 439

Query: 342 KNL 344
           +N 
Sbjct: 440 ENE 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 45/351 (12%), Positives = 110/351 (31%), Gaps = 112/351 (31%)

Query: 53  VYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLEEAKKKNVD------------ 99
           +     ID +++  + V   +    T   K  ++ ++ +EE  + N              
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 100 -----VVIVDTAGRLQID-----------KAMMDELKDVKRVLNPTEVLLVVDAMTGQEA 143
                 + ++   RL  D                +L+     L P +  +++D + G   
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGSGK 163

Query: 144 AALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDL----EPF 199
             +     +++ ++  +  K+D        L++K  +  P  ++   E ++ L    +P 
Sbjct: 164 TWVA----LDVCLSYKVQCKMDF---KIFWLNLKNCN-SPETVL---EMLQKLLYQIDPN 212

Query: 200 Y---PDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM--------QKKIMSANFDFN--- 245
           +    D  +   L +  +     + + +++ +  E            K  +A F+ +   
Sbjct: 213 WTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKI 268

Query: 246 ----------DFLK-QTRTVARMGSM-------------SRVIGMIPG-----MGKITP- 275
                     DFL   T T   +                 + +   P      +    P 
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 276 ------AQVRE------------AEKSLKIMEAMIEAMTPEE-REKPELLA 307
                   +R+             +K   I+E+ +  + P E R+  + L+
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 38/300 (12%), Positives = 94/300 (31%), Gaps = 95/300 (31%)

Query: 90  LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT 149
            E+A   N D   V    +  + K  +D +   K  ++ T  L        +E    V  
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQK 81

Query: 150 FNIEIGIT---GAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMA 205
           F +E  +      +++ +  + R  + ++   +  +        +R+  D + F      
Sbjct: 82  F-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--------DRLYNDNQVFAKY--- 129

Query: 206 GRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIG 265
                       V + Q  ++      +++ ++         L+  + V        + G
Sbjct: 130 -----------NVSRLQPYLK------LRQALLE--------LRPAKNVL-------IDG 157

Query: 266 MIPGMGK-----------------------ITPAQVREAEKSLKIMEAMIEAMTPEEREK 302
           +  G GK                       +        E  L++++ ++  + P    +
Sbjct: 158 V-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 303 PELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDA 362
            +  +   +R       S + E      + +L + +   +N         L  L N+++A
Sbjct: 217 SDHSSNIKLR-----IHSIQAE------LRRLLKSK-PYEN--------CLLVLLNVQNA 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 74/208 (35%)

Query: 229 DAEEMQ---KKIMS-------ANFDFNDFLKQTRTV-------------ARMGSMSRVIG 265
           +  E Q   K I+S        NFD  D     +++               +    R+  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 266 MIPGMGKITPAQVREA-EKSLK-----IMEAM-IEAMTP--------EEREK----PELL 306
            +    +     V++  E+ L+     +M  +  E   P        E+R++     ++ 
Sbjct: 70  TLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 307 AESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM--GVMEG-G--SLPALSNLED 361
           A+  V R           Q   +L   L ++R   KN++  G + G G   +       D
Sbjct: 127 AKYNVSR----------LQPYLKLRQALLELR-PAKNVLIDG-VLGSGKTWVAL-----D 169

Query: 362 ALKSE--QKAPPG-----TARRKRRSES 382
              S   Q            +     E+
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPET 197

>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C Length = 69

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 282 EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 341
           +K L  MEA+I +MT +ER KPE++  S  R++R+A  SG   Q V++L+ Q   M+  M
Sbjct: 9   QKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQRMM 66

Query: 342 KNL 344
           K +
Sbjct: 67  KKM 69

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 18/125 (14%)

Query: 13  SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP 72
               +I+L GL GVGK+T S  LA  L K     +++  D+ R                P
Sbjct: 2   GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-------------ESFP 48

Query: 73  VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 132
           V+    E    +   + ++ A K    V++ DT        +M  +L ++ +  N    +
Sbjct: 49  VWKEKYEEFIKKSTYRLIDSALKNYW-VIVDDTN----YYNSMRRDLINIAKKYNKNYAI 103

Query: 133 LVVDA 137
           + + A
Sbjct: 104 IYLKA 108

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 45.1 bits (106), Expect = 9e-06
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV-AGDVYRPAAIDQLVILGEQVGVPVYT 75
           + ++ G+ GVGK+TV AK+   L  QG +  ++  GD     A+             +  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 76  AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL-KDVKRVLNPTEVLLV 134
              +      AK   EEA+      + +DT   ++     +  L   V   +NP+ + L+
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 33/149 (22%)

Query: 25  GVGKTTVSAKLANYLKKQGKS----------CMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           GVGKT V A LA+  ++ G                  D+   A + +L  + +  G+  Y
Sbjct: 37  GVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDL---AEVGRLAGVTQLAGLARY 93

Query: 75  T-----------AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG----RLQIDKAMMDEL 119
                       AG  +       + + +  +    + +V+ AG     L         L
Sbjct: 94  PQPMAPAAAAEHAGMALPARDQIVRLIADLDRPG-RLTLVEGAGGLLVELAEPGVT---L 149

Query: 120 KDVKRVLNPTEVLLVVDAMTGQEAAALVT 148
           +DV   +     L+VV A  G      +T
Sbjct: 150 RDVAVDVAA-AALVVVTADLGTLNHTKLT 177

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 25  GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ 84
           G GKTT    +A  L + G +  +V  D               +    V+TA +E     
Sbjct: 12  GSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT---NWSKAGKAAFDVFTAASEKDVYG 68

Query: 85  IAKQGLEEAKKKNVDVVIVDTAGRL 109
           I K         + D  IVD AG L
Sbjct: 69  IRKD------LADYDFAIVDGAGSL 87

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV-AGDVYRPAAIDQLVILGEQVGVPVYT 75
           V+++ G+ GVG TT S    + L+K+G +  +V  G V    A ++ ++        +  
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD---QMRK 61

Query: 76  AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL-KDVKRVLNPTEVLLV 134
              E +       G + A+      V VDT   +   K  +  L   V   LNP  +++V
Sbjct: 62  MDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 121

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Length = 174

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 16/157 (10%)

Query: 11  AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD--------------VYRP 56
            K+   ++  A   G GKTT+  KL   L  +G    L+                   R 
Sbjct: 2   GKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRK 61

Query: 57  AAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM 116
           A   Q ++  +Q    +     E +     +          +D+++V+     +I K ++
Sbjct: 62  AGAAQTIVASQQRWALMTETPDEEELD--LQFLASRMDTSKLDLILVEGFKHEEIAKIVL 119

Query: 117 DELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIE 153
                  R         V+   +       V   +I 
Sbjct: 120 FRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDIN 156

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 13  SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP 72
             P +I++ G    GKTT+S  LA  L        L++ D ++    D L     +    
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGL-----RLPLLSKDAFKEVMFDGLGWSDREWSRR 57

Query: 73  VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 121
           V      +     A   L+  +      +I+++  R+ +D   M  L  
Sbjct: 58  VGATAIMM-LYHTAATILQSGQ-----SLIMESNFRVDLDTERMQNLHT 100

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54
           +   V+ + GL   GKTT++ +L+  L++QG S  +   D +
Sbjct: 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 76
           + ++ G  GVGK+T   +LA  L         + GD+     +        +        
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIIN-HMVVGGYRPPWE-----SDE 53

Query: 77  GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVD 136
              +    I    +     +N   V++D        +A+   ++     +    ++L  +
Sbjct: 54  LLALTWKNITDLTVNFLLAQN--DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTN 111

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 14/125 (11%)

Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
             +IL  G  G GK+T     A     +      +  D YR     Q ++  E+     Y
Sbjct: 2   KKIILTIGCPGSGKST----WAREFIAKNPGFYNINRDDYR-----QSIMAHEERDEYKY 52

Query: 75  TAGTEVKPSQIAKQGLEEA--KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 132
           T   E   + +     +       +V  VI+       ++       +   +        
Sbjct: 53  TKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTN---LNPERRLAWETFAKEYGWKVEH 109

Query: 133 LVVDA 137
            V D 
Sbjct: 110 KVFDV 114

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Length = 459

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 27/141 (19%)

Query: 8   LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---AAIDQLVI 64
           +   K +   + + G  G G TT++  +   L   G++ +++A     P   A      I
Sbjct: 38  MKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAA----PTHAAKK----I 89

Query: 65  LGEQVGVPVYTAGT-----EVKPSQIAKQGLEEAKKKN----VDVVIVDTAGRLQIDKAM 115
           L +  G     A T     ++ P    +  L E K+        V+I D       D+ +
Sbjct: 90  LSKLSGKE---ASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVS--MYDRKL 144

Query: 116 MDELKDVKRVLNPTEVLLVVD 136
              L  +  +     ++ + D
Sbjct: 145 FKIL--LSTIPPWCTIIGIGD 163

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 29/90 (32%)

Query: 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY---------------- 54
          +  +P VI +AG    GKTT++  LA  L   G+   L+  D Y                
Sbjct: 2  SAPKPFVIGIAGGTASGKTTLAQALARTL---GERVALLPMDHYYKDLGHLPLEERLRVN 58

Query: 55 --RPAAID------QLVIL--GEQVGVPVY 74
             P A D          L  G  V +PVY
Sbjct: 59 YDHPDAFDLALYLEHAQALLRGLPVEMPVY 88

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Length = 299

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 43/198 (21%)

Query: 8   LVFA--KSRPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------- 56
           L FA  ++   ++++ G     GKT VS+ LA  + +  +  + +  D+ R         
Sbjct: 95  LHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTV 154

Query: 57  -------------AAIDQLVILGEQVGVPVYTAG------TEVKPSQIAKQGLEEAKKKN 97
                          +++++    + G  V T G      +E+      +Q LE A   +
Sbjct: 155 SNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWA-NDH 213

Query: 98  VDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVV--DAMTGQEAAALVTTF-NIE 153
            D+VIVDT   L + D A++               LLV      T +E +  +       
Sbjct: 214 YDLVIVDTPPMLAVSDAAVVGRSVGT--------SLLVARFGLNTAKEVSLSMQRLEQAG 265

Query: 154 IGITGAILTKLDGDSRGG 171
           + I GAIL  +   +   
Sbjct: 266 VNIKGAILNGVIKRASTA 283

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 7   ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG 66
               +  +P  ILL G  G GKTT+        K+   + +++ GD +R      L +  
Sbjct: 24  RGKKSSKQPIAILLGGQSGAGKTTIHRIK---QKEFQGNIVIIDGDSFRSQHPHYLELQQ 80

Query: 67  EQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 121
           E          T+    ++ +  + +      +++I  T   + + K     LK+
Sbjct: 81  E--YGKDSVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKN 133

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54
          +    ++ L+G  G GK+T+S  LA  L  QG    +V  D +
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} PDB: 4fxp_A* Length = 200

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
          +  VI + GL G GK+T++  L   L ++GK C ++ GD  R
Sbjct: 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	100.0
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	100.0
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	100.0
2xxa_A	433	Signal recognition particle protein; protein trans	100.0
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	100.0
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	100.0
2jqe_A	119	SRP54, signal recognition 54 kDa protein; AF54, st	100.0
1hq1_A	105	Signal recognition particle protein; protein-RNA c	100.0
1mfq_C	129	SRP54, signal recognition particle 54KDA protein;	100.0
1qb2_A	109	SRP54, human signal recognition particle 54 KD pro	100.0
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	100.0
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.98
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.97
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.97
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.96
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.95
1dul_A	69	Signal recognition particle protein (fifty-four ho	99.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.94
2og2_A	359	Putative signal recognition particle receptor; nuc	99.94
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.93
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.93
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	99.72
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	99.71
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	99.7
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	99.7
3end_A	307	Light-independent protochlorophyllide reductase ir	99.69
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	99.69
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	99.69
3fwy_A	314	Light-independent protochlorophyllide reductase I	99.69
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	99.67
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	99.67
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	99.67
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	99.67
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	99.66
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	99.66
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	99.65
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	99.65
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	99.63
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	99.59
3cwq_A	209	Para family chromosome partitioning protein; alpha	99.58
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	99.56
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	99.55
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	99.54
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	99.5
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	99.5
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	99.49
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	99.48
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	99.48
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.47
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	99.46
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	99.44
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	99.44
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.4
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.36
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	99.35
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	99.35
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.34
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	99.29
3igf_A	374	ALL4481 protein; two-domained protein consisting o	99.24
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.16
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.03
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.93
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.92
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.9
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.85
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	98.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.78
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.73
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.71
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.69
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.66
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.57
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.42
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.42
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.41
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.4
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	98.4
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.37
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.36
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.27
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.26
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.21
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.21
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.2
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.2
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.18
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.14
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.13
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.12
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.11
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.1
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.1
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.08
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.06
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.05
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.04
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.04
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.04
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.01
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.99
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.99
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.99
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.99
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.98
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.96
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.93
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.89
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.88
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.87
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.86
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.85
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.85
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.85
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.84
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.84
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.83
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.83
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.83
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.82
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.82
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.82
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.81
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.81
3io5_A	333	Recombination and repair protein; storage dimer, i	97.8
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.8
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.8
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.8
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.78
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.78
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.78
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.78
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.77
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.76
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.75
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.75
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.74
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.74
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.74
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.74
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.74
2g0t_A	350	Conserved hypothetical protein; structural genomic	97.73
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.73
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.73
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.72
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.72
3bos_A	242	Putative DNA replication factor; P-loop containing	97.71
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.71
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.71
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.71
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.7
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.69
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.69
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.68
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.68
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.68
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.67
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.66
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.66
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.66
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.66
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.65
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.65
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.64
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.64
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.64
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.63
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.63
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.62
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.62
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.62
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.62
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.61
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.61
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.61
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.61
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.61
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.6
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.6
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.59
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.59
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.59
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.58
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.58
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.58
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.58
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.57
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.57
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.55
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.54
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.54
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.53
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.53
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.52
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.52
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.52
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.52
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.51
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.51
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.51
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.51
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.51
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.51
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.49
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.48
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.48
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.48
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.48
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.48
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.47
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.47
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.47
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.47
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.46
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.46
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.46
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.46
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.46
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.44
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.44
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.44
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.43
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.42
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.42
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.41
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.4
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.4
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.39
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.39
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.38
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.37
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.37
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.36
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.36
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.36
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.36
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.35
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.35
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.35
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.34
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.34
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.33
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.33
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.32
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.32
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.32
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.31
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.3
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.3
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.29
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.29
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.29
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.29
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.28
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.28
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.27
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.27
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.26
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.24
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.24
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.24
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.23
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.23
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.23
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.22
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.22
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.21
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.21
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	97.21
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.21
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	97.2
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.19
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.17
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.16
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.16
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.16
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.15
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.14
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.14
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.13
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.11
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.08
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.07
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.06
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.05
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.05
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.04
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.04
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.03
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.03
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.03
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.02
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.01
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.01
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.01
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.01
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.0
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.99
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	96.99
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.98
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.97
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.97
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.95
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.95
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.95
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.94
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.94
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.93
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.92
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.92
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.92
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.91
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.91
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.87
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.87
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	96.86
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.85
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.85
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.84
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	96.81
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	96.8
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.77
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.76
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.76
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.76
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.75
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.75
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.73
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.72
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.71
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.71
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.7
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.69
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.68
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.67
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.66
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.64
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.63
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	96.63
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.62
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.62
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.59
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.58
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.57
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.57
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.58
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.56
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.55
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.52
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.52
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.52
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.48
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.47
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.47
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.46
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.46
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.46
2qgz_A	308	Helicase loader, putative primosome component; str	96.46
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.45
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.44
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.43
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.42
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.42
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.42
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.41
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.4
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.38
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.38
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.38
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.37
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.37
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	96.37
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.37
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.36
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.35
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.35
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.34
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.33
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.33
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.33
2c5m_A	294	CTP synthase; cytidine 5-prime triphosphate synthe	96.32
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.32
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.31
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.3
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.28
1via_A	175	Shikimate kinase; structural genomics, transferase	96.26
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.25
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.21
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.21
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.2
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.19
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.18
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.18
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.18
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.17
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.17
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.16
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.16
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.14
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.13
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.1
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.09
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.09
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.07
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.07
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.06
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.06
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.05
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.04
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.01
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.01
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.99
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.99
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.98
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.96
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.95
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.95
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.9
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.9
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.89
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.88
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.88
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.86
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.86
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.85
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.84
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.83
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.79
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.77
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	95.74
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.71
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.71
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.71
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.7
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.69
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.68
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.67
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	95.66
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	95.63
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.62
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.61
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.6
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.6
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	95.59
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.57
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.53
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.52
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.49
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.46
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.46
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	95.45
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.44
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.44
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.42
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.41
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.37
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.36
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.36
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.35
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.34
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.32
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.32
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.3
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.28
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.25
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.2
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.2
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.18
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.15
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.12
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.1
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.06
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.99
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.92
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.88
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.83
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.83
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.78
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.77
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.75
3ice_A	422	Transcription termination factor RHO; transcriptio	94.74
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.72
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	94.72

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=100.00  E-value=4.8e-77  Score=604.77  Aligned_cols=347  Identities=36%  Similarity=0.639  Sum_probs=305.0

Q ss_pred             CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657            2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK   81 (403)
Q Consensus         2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~   81 (403)
                      |.+...+... .+|++|+++|++||||||++++||.+|+++|++|+++++|++||++++|+..++...+++++......+
T Consensus        88 ~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~d  166 (443)
T 3dm5_A           88 GTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKD  166 (443)
T ss_dssp             TSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCC
T ss_pred             cCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCC
Confidence            4433334443 368999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      |..++.+++..+...+||+|||||||+++.+..++.++..+.....|+.+++|+|+++++++.+.++.|++.+++.|||+
T Consensus       167 p~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIl  246 (443)
T 3dm5_A          167 AIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV  246 (443)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEE
Confidence            99999999999987789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhH--HHHHHHHHhc
Q 015657          162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQED--AEEMQKKIMS  239 (403)
Q Consensus       162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~--~~~~~~~~~~  239 (403)
                      ||+|++++++.++++.+.++.||.|+++|+++++|++|+|++++++++|+||+.+|+|++++.+++++  ++ +.+++.+
T Consensus       247 TKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~-~~~k~~~  325 (443)
T 3dm5_A          247 TKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE-DIERFLR  325 (443)
T ss_dssp             ECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-HHHHHHT
T ss_pred             ECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-HHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999998876  65 8999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-CCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHh
Q 015657          240 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQ  318 (403)
Q Consensus       240 ~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~  318 (403)
                      |+||++||++|++++.||||+++||+||||+++ ++....+.+++++++|++||+|||++||+||++|  ++||++|||+
T Consensus       326 ~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~sr~~ria~  403 (443)
T 3dm5_A          326 GKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEII--NYSRIKRIAR  403 (443)
T ss_dssp             TCCCHHHHHHHHHHHHTTCC-------------------CCCCHHHHHHHHHHHTTSCHHHHHCGGGC--CHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhccCHHHHHHHCCCchhhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchhc--ChHHHHHHHc
Confidence            999999999999999999999999999999984 5443446679999999999999999999999999  5899999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 015657          319 DSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL  356 (403)
Q Consensus       319 gsg~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (403)
                      |||++++|||+||+||++|++|||+|.    +|+|+.|
T Consensus       404 gsg~~~~~v~~ll~~~~~~~~~~~~~~----~~~~~~~  437 (443)
T 3dm5_A          404 GSGTSTKDVKELLDQYRQMKKLFKSMN----KRQLSRL  437 (443)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHHHTCC----SCCCC--
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHc----CCCHHHH
Confidence            999999999999999999988888875    3455543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=100.00  E-value=5.3e-75  Score=589.74  Aligned_cols=330  Identities=38%  Similarity=0.636  Sum_probs=297.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+|++|+++|++||||||++.+||.+|+.+|++|+++++|++|+++++++..++...+++++......+|..++..++..
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~  174 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI  174 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999888888899999999999


Q ss_pred             HHhCCCcEEEEeCCCCcc--ccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           93 AKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~--~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      +...+||+|||||||+++  .+..++.++..+...+.|+++++|+|+++++++.+.+..|++.+++.|||+||+|+++++
T Consensus       175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~a~~  254 (433)
T 3kl4_A          175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKG  254 (433)
T ss_dssp             TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGCSCH
T ss_pred             HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEecccccccc
Confidence            877799999999999998  899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC--CCCHHHHH
Q 015657          171 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA--NFDFNDFL  248 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~--~~~~edl~  248 (403)
                      +.++++...++.||.|+|+|++++++++|+|++++++++|+||+.+|+|++++.+++++++++++++.+|  +||++||+
T Consensus       255 G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~  334 (433)
T 3kl4_A          255 GGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVY  334 (433)
T ss_dssp             HHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHH
T ss_pred             hHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  89999999


Q ss_pred             HHHHHHHhcCChhHHHhcCCCCCC-CC---chhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCCCH
Q 015657          249 KQTRTVARMGSMSRVIGMIPGMGK-IT---PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTE  324 (403)
Q Consensus       249 ~ql~~~~k~g~~~~~~~~~pg~~~-~~---~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~  324 (403)
                      +|++++.||||+++||+||||+++ ++   ....+.+++++++|++||+|||++||+||++|  ++||++|||+|||+++
T Consensus       335 ~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~sr~~ria~gsg~~~  412 (433)
T 3kl4_A          335 AQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNII--DKSRMRRIAEGSGLEV  412 (433)
T ss_dssp             HHHHHHHHCCSSSGGGGTTTCCCCCSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGGC--CHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHhccCHHHHHHhCCCCccccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchhc--cHHHHHHHHccCCCCH
Confidence            999999999999999999999985 43   13445678899999999999999999999999  5899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 015657          325 QQVSQLVAQLFQMRVRMKNL  344 (403)
Q Consensus       325 ~~v~~l~~~~~~~~~~~~~~  344 (403)
                      +|||+||+||++|++|||+|
T Consensus       413 ~~v~~ll~~~~~~~~~~~~~  432 (433)
T 3kl4_A          413 EEVRELLEWYNNMNRLLKMV  432 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999986

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=100.00  E-value=1e-69  Score=550.17  Aligned_cols=333  Identities=47%  Similarity=0.766  Sum_probs=298.7

Q ss_pred             CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657            2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK   81 (403)
Q Consensus         2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~   81 (403)
                      |....++++.  ++.+++++|++|+||||++.+||.+++..|++|+++++|+++|++++++..++...++++++.+...+
T Consensus        87 ~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~  164 (425)
T 2ffh_A           87 GGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGES  164 (425)
T ss_dssp             TSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCC
T ss_pred             CCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCC
Confidence            4433566776  78999999999999999999999999999999999999999999999988888889999999877778


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      |.+++.++++.++..+||+|||||||+++.+..++.++..+...+.|+++++|+|+.+++++.+.++.|++.+++.|||+
T Consensus       165 p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIl  244 (425)
T 2ffh_A          165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVL  244 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEE
Confidence            88888889988866899999999999999888899999999888899999999999888999999999998899999999


Q ss_pred             ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657          162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN  241 (403)
Q Consensus       162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~  241 (403)
                      ||+|++.+++.++++.+.+|.||.|+|.|+.++++++|+|++++++++|++|+.+++|++++.+++++++++.    . +
T Consensus       245 TKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~----~-~  319 (425)
T 2ffh_A          245 TKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA----K-E  319 (425)
T ss_dssp             ESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC----------------C
T ss_pred             eCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH----H-h
Confidence            9999999999999999999999999999999999999999999999999999999999999877666555543    2 8


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcC
Q 015657          242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSG  321 (403)
Q Consensus       242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg  321 (403)
                      |+++||++|++++.|||+++.+++||||+++    +.+.+++++++|++||+|||++||+||++|  ++||++|||+|||
T Consensus       320 f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~~----~~~~~~~~~~~~~~i~~smt~~e~~~p~~~--~~sr~~ria~gsg  393 (425)
T 2ffh_A          320 LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQ----GLKVDEKAIKRLEAIVLSMTPEERKDPRIL--NGSRRKRIAKGSG  393 (425)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTGGGTSCSCSC----CTTSCHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhhCcCChhhhhccCCCchh----hccccHHHHHHHHHHHHcCCHHHhcCcccc--ChHHHHHHHccCC
Confidence            9999999999999999999999999999973    234678999999999999999999999999  5799999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcc
Q 015657          322 KTEQQVSQLVAQLFQMRVRMKNLMGV  347 (403)
Q Consensus       322 ~~~~~v~~l~~~~~~~~~~~~~~~~~  347 (403)
                      ++++|||+||+||++|++|||+|.+.
T Consensus       394 ~~~~~v~~ll~~~~~~~~~~~~~~~~  419 (425)
T 2ffh_A          394 TSVQEVNRFIKAFEEMKALMKSLEKK  419 (425)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=100.00  E-value=4.4e-69  Score=548.35  Aligned_cols=342  Identities=49%  Similarity=0.790  Sum_probs=306.6

Q ss_pred             CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657            2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV   80 (403)
Q Consensus         2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~   80 (403)
                      |.....+.+...+|++|+++|++||||||++++||.+|+++ |++|++||+|++++++++++..+....++++++.+...
T Consensus        87 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~  166 (433)
T 2xxa_A           87 GEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQ  166 (433)
T ss_dssp             CSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSS
T ss_pred             ccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCC
Confidence            44444566766789999999999999999999999999998 99999999999999999999888888999999887777


Q ss_pred             CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657           81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI  160 (403)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI  160 (403)
                      +|.+++.+++..+.+.+||+|||||||+++.+..++.++..+.....|+++++|+|+.+++++...++.|+..+++.|+|
T Consensus       167 dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvV  246 (433)
T 2xxa_A          167 KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVV  246 (433)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEE
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEE
Confidence            89998888999887679999999999999888888999988888888999999999988888999899998889999999


Q ss_pred             EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcC
Q 015657          161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA  240 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~  240 (403)
                      +||+|++++++.++++.+.++.||.|+|.++.++++++|+|++++++++|++|+.+++|.+++.+++++++++.+++.++
T Consensus       247 lnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~~k~~~~  326 (433)
T 2xxa_A          247 LTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKG  326 (433)
T ss_dssp             EECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             EecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999998888889999999999


Q ss_pred             -CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhh--HhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHH
Q 015657          241 -NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVA  317 (403)
Q Consensus       241 -~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~--~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria  317 (403)
                       +|+++||++|++++.+||+++.+++||||++++.+ +.+  .++++++++++||+|||++||+||++|  ++||++|||
T Consensus       327 ~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~-~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~--~~sr~~ria  403 (433)
T 2xxa_A          327 DGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPD-NVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIA  403 (433)
T ss_dssp             TSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhhh-hhhccccHHHHHHHHHHHHcCCHHHhcCcccc--CHHHHHHHH
Confidence             89999999999999999999999999999987642 233  567889999999999999999999999  579999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015657          318 QDSGKTEQQVSQLVAQLFQMRVRMKNLMG  346 (403)
Q Consensus       318 ~gsg~~~~~v~~l~~~~~~~~~~~~~~~~  346 (403)
                      +|||++++|||+||+||++|++|||+|.+
T Consensus       404 ~gsg~~~~~v~~l~~~~~~~~~~~~~~~~  432 (433)
T 2xxa_A          404 AGSGMQVQDVNRLLKQFDDMQRMMKKMKK  432 (433)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998763

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=100.00  E-value=1.7e-67  Score=544.36  Aligned_cols=390  Identities=29%  Similarity=0.551  Sum_probs=333.0

Q ss_pred             CCccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657            2 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK   81 (403)
Q Consensus         2 g~~~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~   81 (403)
                      |.....+.+...++++|+++|.+||||||++.+||++|+++|++|++|++|+++|++++++..+....+++++......+
T Consensus        88 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~d  167 (504)
T 2j37_W           88 DPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMD  167 (504)
T ss_dssp             CCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSC
T ss_pred             ccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCC
Confidence            33344555555778999999999999999999999999999999999999999999999998888888999998777778


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      |.+++.+++..+.+.+||+|||||||++..+..++.++..+...+.|+.+++|+|+..++++...+..|++.+++.++|+
T Consensus       168 p~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVl  247 (504)
T 2j37_W          168 PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIV  247 (504)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEE
Confidence            99998888988877899999999999998877788888777777789999999999888777788888877777789999


Q ss_pred             ccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCC
Q 015657          162 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN  241 (403)
Q Consensus       162 Nk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~  241 (403)
                      ||+|..++++.++++.+.++.||.|+|.+++++++.+|+|..++++++|.||+.+|+|.+.+. .+++++++.+++.+++
T Consensus       248 NK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~~k~~~g~  326 (504)
T 2j37_W          248 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALIEKLKHGQ  326 (504)
T ss_dssp             ECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTTTSCTTSG
T ss_pred             eCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence            999999988888899999999999999999999999999999999999999999999999887 4555677888999999


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHhcCCCCCC--CCchhhhHhHHHHHHHHHHHhCCCHHhhcC---ccccccCccHHHHH
Q 015657          242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKRV  316 (403)
Q Consensus       242 ~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~--~~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~~ri  316 (403)
                      ||++||++|++++.+||++++|++||||+++  +.......+++.++|+++||+|||++||+|   |++|..++||++||
T Consensus       327 ~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ri  406 (504)
T 2j37_W          327 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRV  406 (504)
T ss_dssp             GGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHH
Confidence            9999999999999999999999999999987  543334567899999999999999999999   99995567999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHHHhcc--c-CCCCCC-chhhH-HHH-h-ccccCCCCchhhcccc-chhhhhccC
Q 015657          317 AQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV--M-EGGSLP-ALSNL-EDA-L-KSEQKAPPGTARRKRR-SESRRQFVD  388 (403)
Q Consensus       317 a~gsg~~~~~v~~l~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~~~-~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~  388 (403)
                      |+|||++++|||+||+||++|++|||+|.+.  + ++|.|+ .+... +.+ + +..+.++|.|.+.-.+ .++++.+++
T Consensus       407 a~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (504)
T 2j37_W          407 ARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQ  486 (504)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHCCCCCCSCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHHTTSSSSHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHhcccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcCCCchHHHHHHH
Confidence            9999999999999999999999988887652  1 234444 22111 111 2 5668889999998776 788888888


Q ss_pred             CCCC
Q 015657          389 PAST  392 (403)
Q Consensus       389 ~~~~  392 (403)
                      +...
T Consensus       487 ~~~~  490 (504)
T 2j37_W          487 FQQG  490 (504)
T ss_dssp             HC--
T ss_pred             Hhcc
Confidence            7753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=100.00  E-value=2.2e-64  Score=513.67  Aligned_cols=334  Identities=39%  Similarity=0.686  Sum_probs=283.4

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHH
Q 015657            6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQ   84 (403)
Q Consensus         6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~   84 (403)
                      ..+.+..++|++|+++|++||||||++.+||.+++++|++|+++++|+|+|++++++..++...++++++.. ...+|..
T Consensus        90 ~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~  169 (432)
T 2v3c_C           90 KKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVD  169 (432)
T ss_dssp             CCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSST
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHH
Confidence            345555567889999999999999999999999999999999999999999999998888888899999876 4445555


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcC-CeeEEEEcc
Q 015657           85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTK  163 (403)
Q Consensus        85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-~i~GvIlNk  163 (403)
                      ++.+++..+  .+||+|||||||++..+..++.++..+.....|+.+++|+|+..++++...+..|+..+ ++.|+|+||
T Consensus       170 i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK  247 (432)
T 2v3c_C          170 IVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK  247 (432)
T ss_dssp             THHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEEC
T ss_pred             HHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeC
Confidence            666677766  78999999999999888888888888888788999999999988888888888888778 889999999


Q ss_pred             CCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCC
Q 015657          164 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFD  243 (403)
Q Consensus       164 ~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~  243 (403)
                      +|...+++.++++.+.++.|+.|+|.|+.++++.+|+|..++++++|+||+.+++|.+.+.+++++ +++.+++..++|+
T Consensus       248 ~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~~k~~~~~~~  326 (432)
T 2v3c_C          248 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESIDAIMRGKFT  326 (432)
T ss_dssp             SSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTHHHHCCSCCH
T ss_pred             CCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHHHHHHcCCCC
Confidence            999988888889999999999999999999999999999999999999999999999999988877 8899999999999


Q ss_pred             HHHHHHHHHHHHhcCChhHHHhcCCCCCCCC-chhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCC
Q 015657          244 FNDFLKQTRTVARMGSMSRVIGMIPGMGKIT-PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGK  322 (403)
Q Consensus       244 ~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~-~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~  322 (403)
                      ++||++|++++.+|||++++++||||++.+. ....+.+++++++|++||+|||++||+||++|  ++||++|||+|||+
T Consensus       327 ~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i--~~sr~~rI~~gsg~  404 (432)
T 2v3c_C          327 LNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII--KASRIRRIARGSGT  404 (432)
T ss_dssp             HHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC--CHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc--CHHHHHHHHhhcCC
Confidence            9999999999999999999999999987642 22333467889999999999999999999999  58999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q 015657          323 TEQQVSQLVAQLFQMRVRMKNL  344 (403)
Q Consensus       323 ~~~~v~~l~~~~~~~~~~~~~~  344 (403)
                      +++|||+||+||++|++||+++
T Consensus       405 ~~~~v~~ll~~~~~~~~~~~~~  426 (432)
T 2v3c_C          405 TENDVREVLRYYETTKNAIDKL  426 (432)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998888765

>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}

Probab=100.00  E-value=5.6e-39  Score=266.97  Aligned_cols=115  Identities=25%  Similarity=0.502  Sum_probs=100.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHhcCC-CCCC-CCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCcc
Q 015657          234 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV  311 (403)
Q Consensus       234 ~~~~~~~~~~~edl~~ql~~~~k~g~~~~~~~~~p-g~~~-~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~  311 (403)
                      ++++.+|+||++||++|++++.||||+++|++||| |+++ ++..+.+.+++++++|++||+|||++||+||+||  ++|
T Consensus         2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~ii--~~S   79 (119)
T 2jqe_A            2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKII--DSS   79 (119)
T ss_dssp             ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCSSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGGC--CHH
T ss_pred             hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhhccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhhc--CHH
Confidence            35788999999999999999999999999999999 9987 5433445678999999999999999999999999  589


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 015657          312 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP  354 (403)
Q Consensus       312 r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~  354 (403)
                      |++|||+|||++++|||+||+||++|++|||+|.    +|++|
T Consensus        80 R~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~----~g~~~  118 (119)
T 2jqe_A           80 RIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMK----KNKLP  118 (119)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCC----SCCCC
T ss_pred             HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc----cCCCC
Confidence            9999999999999999999999999977777654    34555

>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A

Probab=100.00  E-value=1.6e-38  Score=258.55  Aligned_cols=103  Identities=41%  Similarity=0.678  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCc-hhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhh
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD  319 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~-~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g  319 (403)
                      +||++||++|++++.||||+++|++||||++++.. ...+.+++++++++|||+|||++||+||++|  ++||++|||+|
T Consensus         1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~ii--~~SR~~RIA~G   78 (105)
T 1hq1_A            1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAG   78 (105)
T ss_dssp             CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCcccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhhc--CHHHHHHHHcc
Confidence            59999999999999999999999999999987643 2344678899999999999999999999999  57999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHh
Q 015657          320 SGKTEQQVSQLVAQLFQMRVRMKNLM  345 (403)
Q Consensus       320 sg~~~~~v~~l~~~~~~~~~~~~~~~  345 (403)
                      ||++++|||+||+||++|++|||+|.
T Consensus        79 SG~~v~eVn~LLkqf~~m~kmmk~m~  104 (105)
T 1hq1_A           79 SGMQVQDVNRLLKQFDDMQRMMKKMK  104 (105)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999875

>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1

Probab=100.00  E-value=4.9e-38  Score=263.59  Aligned_cols=108  Identities=27%  Similarity=0.553  Sum_probs=95.9

Q ss_pred             cCCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC--CCchhhhHhHHHHHHHHHHHhCCCHHhhcC---ccccccCccHH
Q 015657          239 SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRR  313 (403)
Q Consensus       239 ~~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~--~~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~  313 (403)
                      .|+|||+||++|++++.||||+++|++||||+++  ++....+.+++++++|++||+|||++||+|   |+||..++||+
T Consensus        12 ~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SRk   91 (129)
T 1mfq_C           12 HGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRI   91 (129)
T ss_dssp             CSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHHH
T ss_pred             cCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChHHH
Confidence            6799999999999999999999999999999987  543345578999999999999999999999   99995557999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015657          314 KRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG  346 (403)
Q Consensus       314 ~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~  346 (403)
                      +|||+|||++++|||+||+||++|++|||+|.+
T Consensus        92 ~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~  124 (129)
T 1mfq_C           92 QRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG  124 (129)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999998864

>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W

Probab=100.00  E-value=1.2e-37  Score=255.45  Aligned_cols=104  Identities=27%  Similarity=0.558  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCC-C-CchhhhHhHHHHHHHHHHHhCCCHHhhcC---ccccccCccHHHH
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I-TPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKR  315 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~-~-~~~~~~~~~~~~~~~~~~i~smt~~e~~~---p~~~~~~~~r~~r  315 (403)
                      +||++||++|++++.||||+++|++||||+++ + +....+.++++++++++||+|||++||+|   |++|+.++||++|
T Consensus         1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~R   80 (109)
T 1qb2_A            1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR   80 (109)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHH
Confidence            59999999999999999999999999999987 4 43344578899999999999999999999   9999655899999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015657          316 VAQDSGKTEQQVSQLVAQLFQMRVRMKNL  344 (403)
Q Consensus       316 ia~gsg~~~~~v~~l~~~~~~~~~~~~~~  344 (403)
                      ||+|||++++|||+||+||++|++|||+|
T Consensus        81 IA~GSG~~v~eVn~LLkqf~~m~kmmk~m  109 (109)
T 1qb2_A           81 VARGSGVSTRDVQELLTQYTKFAQMVKKM  109 (109)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred             HHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=100.00  E-value=1.3e-31  Score=260.20  Aligned_cols=209  Identities=44%  Similarity=0.714  Sum_probs=188.0

Q ss_pred             CCcccc-ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC
Q 015657            2 GGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV   80 (403)
Q Consensus         2 g~~~~~-l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~   80 (403)
                      |+.... +++... +++++++|++|+||||++.+||.+++..|++|+++++|+++|++.+++..+.+..++++++.....
T Consensus        85 ~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~  163 (297)
T 1j8m_F           85 GGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEK  163 (297)
T ss_dssp             TCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCC
T ss_pred             ccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCC
Confidence            333334 666544 899999999999999999999999999999999999999999999998888888899999876667


Q ss_pred             CHHHHHHHHHHHHHhCCCcEEEEeCCCCcc--ccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657           81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITG  158 (403)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~--~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G  158 (403)
                      +|.+++.+++..+++.+||+|||||||+++  .+..++.++..+.....++.+++|+|+.+++++...++.|++.+++.|
T Consensus       164 ~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~g  243 (297)
T 1j8m_F          164 DVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGT  243 (297)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEE
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCE
Confidence            888888889998876899999999999998  777788888888778889999999999888888888888888888999


Q ss_pred             EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCC
Q 015657          159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM  211 (403)
Q Consensus       159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~  211 (403)
                      +|+||+|...+++.+.++...++.||.|++.|++++++++|+|++++++++|+
T Consensus       244 vVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~  296 (297)
T 1j8m_F          244 IIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH  296 (297)
T ss_dssp             EEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred             EEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999986

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.98  E-value=7.6e-31  Score=254.54  Aligned_cols=205  Identities=54%  Similarity=0.842  Sum_probs=180.7

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHH
Q 015657            6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI   85 (403)
Q Consensus         6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~   85 (403)
                      .++++.  ++.+++++|++|+||||++.+||.+++..|.+|+++++|++++.+.+++..+.+..++++++.+...+|.++
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l  168 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESI  168 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHH
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHH
Confidence            356665  788999999999999999999999999999999999999999999888877777789999987767788888


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           86 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                      .+.++..+...+||+|||||||....|...+.++..+...+.|+.+++|+|+.+++++...++.+++.+++.|+|+||+|
T Consensus       169 ~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i~givlnk~d  248 (295)
T 1ls1_A          169 RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLD  248 (295)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCCCEEEEECCC
Confidence            88888887556899999999999988888888888888888899999999998888888888888888999999999999


Q ss_pred             CCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCc
Q 015657          166 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       166 ~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~  212 (403)
                      ...+++.+.++.+.++.||.|++.|++++|+++|+|++++++++|||
T Consensus       249 ~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g  295 (295)
T 1ls1_A          249 GDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG  295 (295)
T ss_dssp             GCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred             CCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999986

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.97  E-value=8.5e-31  Score=255.20  Aligned_cols=204  Identities=44%  Similarity=0.715  Sum_probs=184.1

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA   86 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~   86 (403)
                      .+++...++.+++++|++||||||++.+||.+++..|.+|+++++|++|+++.+++..+....++++++......|..++
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~  175 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVA  175 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHH
Confidence            56666678899999999999999999999999999999999999999999999998888888899988776666787777


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI  160 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI  160 (403)
                      .+++..+...+||+|||||||.+..+..++.++..+...+      .|+.+++|+|+.++++++..++.|.+..++.|+|
T Consensus       176 ~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~~i~gvV  255 (306)
T 1vma_A          176 FDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGII  255 (306)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEE
T ss_pred             HHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence            7777776668999999999999887888888888877665      3789999999999999998888898889999999


Q ss_pred             EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      +||+|.+.+++.++++...++.||.|++.|++++|+++|+|++++++++|
T Consensus       256 lTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~  305 (306)
T 1vma_A          256 LTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS  305 (306)
T ss_dssp             EECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred             EeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999986

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.97  E-value=9.2e-31  Score=256.62  Aligned_cols=208  Identities=35%  Similarity=0.582  Sum_probs=182.3

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh---ccCCceE-eCCCCCC
Q 015657            6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE---QVGVPVY-TAGTEVK   81 (403)
Q Consensus         6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~---~~gv~v~-~~~~~~~   81 (403)
                      .++++...++.+|+++|++|+||||++.+||.+++..|++|+++|+|++++++.+++..+.+   ..+++++ .......
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~  175 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNAD  175 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCC
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCC
Confidence            46778778899999999999999999999999999999999999999999998888776665   6788888 4444567


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC------CceEEEEEecccHHHHHHHHHHhhhcCC
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIG  155 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~  155 (403)
                      |...+.+.+......+||+|||||||+++.+..++.++..+..++.      |+.+++|+++.++++++..++.|.+.++
T Consensus       176 p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~  255 (320)
T 1zu4_A          176 PASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVAD  255 (320)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCC
Confidence            7777777777665689999999999999887778888877766553      7899999999888888888888988899


Q ss_pred             eeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccH
Q 015657          156 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV  214 (403)
Q Consensus       156 i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv  214 (403)
                      +.|+|+||+|.+..++.+.++...++.||.|++.|++++++++|+|++|+++++| ++.
T Consensus       256 i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~-~~~  313 (320)
T 1zu4_A          256 VSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS-GFM  313 (320)
T ss_dssp             CCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG-GGC
T ss_pred             CcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC-Ccc
Confidence            9999999999999999999999999999999999999999999999999999998 543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.96  E-value=1.5e-27  Score=234.46  Aligned_cols=202  Identities=41%  Similarity=0.673  Sum_probs=187.4

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      ...++.+++++|++||||||++.+||.++...+.+|.++++|++++++.+++..+....+++++.......|...+.+.+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999889999999988877788888888888


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      ......++|+++|||+|+.+.+..++.++..+.+++.|++.++|+|+.+++++.+.++.|++..++.++|+||+|+++++
T Consensus       205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~  284 (328)
T 3e70_C          205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARG  284 (328)
T ss_dssp             HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCC
T ss_pred             HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccch
Confidence            77666789999999999998888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCc
Q 015657          171 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~  212 (403)
                      +.+.++...++.||.|++.|+.++++++|+|++++++++|-.
T Consensus       285 G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg~~  326 (328)
T 3e70_C          285 GAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE  326 (328)
T ss_dssp             HHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC--
T ss_pred             hHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999853

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.95  E-value=2e-27  Score=243.16  Aligned_cols=209  Identities=43%  Similarity=0.702  Sum_probs=184.8

Q ss_pred             cccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHH
Q 015657            5 VSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ   84 (403)
Q Consensus         5 ~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~   84 (403)
                      ..++++.-.++.+++|+|++||||||++..|+.++...+.+|.+.++|+++.++.+|+..+....++.++.......+..
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            45677777789999999999999999999999999988999999999999988878877666666788887666667777


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657           85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITG  158 (403)
Q Consensus        85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G  158 (403)
                      .+.+.+......+||+|||||+|+++.+..++.++..+..++      .|+.++||+|++++++++..++.|+..+++.+
T Consensus       363 tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itg  442 (503)
T 2yhs_A          363 VIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTG  442 (503)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSE
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCE
Confidence            788888777678999999999999988888888887776554      37899999999999999999999999999999


Q ss_pred             EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCcc
Q 015657          159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD  213 (403)
Q Consensus       159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~d  213 (403)
                      +|+||+|++.++|.+.++...++.||.|+|.|++++++.+|++++|+++++|+.+
T Consensus       443 vIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~~  497 (503)
T 2yhs_A          443 ITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED  497 (503)
T ss_dssp             EEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC--
T ss_pred             EEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999999864

>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C

Probab=99.95  E-value=4.3e-28  Score=181.75  Aligned_cols=66  Identities=38%  Similarity=0.509  Sum_probs=61.6

Q ss_pred             hhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015657          277 QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL  344 (403)
Q Consensus       277 ~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~  344 (403)
                      +.+.++++++++++||+|||++||+||++|  ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus         4 ~~~~~e~~lkr~~aII~SMT~~Er~nP~ii--~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m   69 (69)
T 1dul_A            4 NDFLEQKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM   69 (69)
T ss_dssp             HHHHHCCHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhHHHHHHHHHHHHcCCHHHHhCcccc--CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            345678899999999999999999999999  579999999999999999999999999999999975

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.94  E-value=1.1e-25  Score=218.91  Aligned_cols=197  Identities=40%  Similarity=0.681  Sum_probs=172.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ++.+++++|++||||||++.+||.++...+.+|.+.++|++++++.+++..+....+++++.......|...+.+.+...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999999988999999999999998888887776667788887766677877777777665


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      ...++|++++||+|+.+.....+.++......+      .|+.+++++|+.+++++...++.|....++.++|+||.|..
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~  260 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT  260 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence            556799999999999887777777776554432      47889999999999999999999988888999999999999


Q ss_pred             CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      .+++.+.++...++.||.|+|.|++++|+++|+|++++++++|
T Consensus       261 a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~  303 (304)
T 1rj9_A          261 AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE  303 (304)
T ss_dssp             CCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred             ccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999986

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.94  E-value=2.1e-25  Score=221.42  Aligned_cols=205  Identities=41%  Similarity=0.689  Sum_probs=179.0

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-CCHHH
Q 015657            6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQ   84 (403)
Q Consensus         6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~~~~~   84 (403)
                      ..++++..++.+++++|++||||||++..||.++...+.+|.+.++|++++++.+|+..+....+++++..... ..|..
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            46777777899999999999999999999999999888999999999999998888877776778888877666 67877


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657           85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITG  158 (403)
Q Consensus        85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G  158 (403)
                      .+.+.+......++|++++|++|..+.....+.+|......+      .|+++++|+|++++++....+..|....++.+
T Consensus       228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~~~g~t~  307 (359)
T 2og2_A          228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITG  307 (359)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCE
T ss_pred             hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHHhcCCeE
Confidence            777777765556789999999999887777777766443332      47888999999999999998888988889999


Q ss_pred             EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      +|+||+|++.++|.+.++...++.||.|++.|+.++|+++|+|++|+++++|
T Consensus       308 iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~  359 (359)
T 2og2_A          308 LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS  359 (359)
T ss_dssp             EEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred             EEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.93  E-value=1.9e-25  Score=216.66  Aligned_cols=191  Identities=28%  Similarity=0.349  Sum_probs=160.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      .++.+++++|++||||||++.+||.+++. .|++|+++++|++++.+.+++..++...+++++..   ..+. .++.++.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~-~l~~al~  178 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKE-EFQQAKE  178 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHH-HHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHH-HHHHHHH
Confidence            35789999999999999999999999995 89999999999999999999988888888877643   2333 3455666


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH-HHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~-~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+  .+||+|||||||....+...+.++..+.....++.+++|+|++.+.. +...+..|. .+++.|+|+||+|...++
T Consensus       179 ~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~  255 (296)
T 2px0_A          179 LF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSL  255 (296)
T ss_dssp             HG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCC
T ss_pred             Hh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccch
Confidence            54  68999999999999877777777776655445788999999977644 444445555 578899999999999999


Q ss_pred             hHHHHHHHHhCCCeEEeeccCCc-CCCCCCCchhhhhhhcC
Q 015657          171 GAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILG  210 (403)
Q Consensus       171 ~~~~~~~~~~g~pi~fig~ge~v-~~l~~f~~~~~~~r~lG  210 (403)
                      +.+.++...++.||.|++.|+++ +++.+|+|++++++++|
T Consensus       256 g~~~~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg  296 (296)
T 2px0_A          256 GSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR  296 (296)
T ss_dssp             HHHHHHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred             hHHHHHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence            99999999999999999999998 89999999999999886

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.93  E-value=2.5e-24  Score=209.24  Aligned_cols=205  Identities=41%  Similarity=0.689  Sum_probs=175.2

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC-CCHHH
Q 015657            6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQ   84 (403)
Q Consensus         6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~-~~~~~   84 (403)
                      ..++++..++.+++++|++||||||++..||.++...+.+|.+.+.|++++++.+|+..+....+++++..... ..|..
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~  170 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  170 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence            45777777889999999999999999999999999888999999999999988888877766678888876665 67777


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeE
Q 015657           85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITG  158 (403)
Q Consensus        85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~G  158 (403)
                      .+.+.+......++|.+++|++|..+.....+.++......+      .|+++++|+|++++++....++.|....++.+
T Consensus       171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~g~t~  250 (302)
T 3b9q_A          171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITG  250 (302)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCE
T ss_pred             HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhcCCCE
Confidence            777777665446789999999999887777777766443332      47888999999889888888888888888999


Q ss_pred             EEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          159 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       159 vIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      +|+||+|+..+++.+.++...++.||.|++.|+.++++++|+|++++++++|
T Consensus       251 iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg  302 (302)
T 3b9q_A          251 LILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS  302 (302)
T ss_dssp             EEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred             EEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999998875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=99.72  E-value=2.6e-16  Score=142.45  Aligned_cols=151  Identities=21%  Similarity=0.169  Sum_probs=103.7

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++..... .+  .....++++++.+.     ..+.+.+..+.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~-~~--~~~~~~~~~~~~~~-----~~l~~~l~~l~   73 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN-WS--KAGKAAFDVFTAAS-----EKDVYGIRKDL   73 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH-HH--TTSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH-HH--hcCCCCCcEEecCc-----HHHHHHHHHhc
Confidence            577777 56999999999999999999999999999998876542 11  23345577776643     55667777774


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHHhh------hcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTFN------IEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~~~------~~~~i~GvIlNk~D~~  167 (403)
                       ..||+||||||+....  ....    +..  .+|.+++|+.+. ....+......+.      ..+++ ++|+|+++..
T Consensus        74 -~~yD~viiD~~~~~~~--~~~~----~l~--~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~  143 (206)
T 4dzz_A           74 -ADYDFAIVDGAGSLSV--ITSA----AVM--VSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM  143 (206)
T ss_dssp             -TTSSEEEEECCSSSSH--HHHH----HHH--HCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred             -CCCCEEEEECCCCCCH--HHHH----HHH--HCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence             6799999999998742  1111    111  147888888872 2244444443332      23445 9999999965


Q ss_pred             Cc-hhHHHHHHHHhCCCe
Q 015657          168 SR-GGAALSVKEVSGKPI  184 (403)
Q Consensus       168 ~~-~~~~~~~~~~~g~pi  184 (403)
                      .. ...+....+.++.|+
T Consensus       144 ~~~~~~~~~~l~~~~~~v  161 (206)
T 4dzz_A          144 ATMLNVLKESIKDTGVKA  161 (206)
T ss_dssp             EEEEHHHHHHHHHHTCCB
T ss_pred             chHHHHHHHHHHHcCCce
Confidence            33 344566666688877

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=99.71  E-value=4.7e-16  Score=147.18  Aligned_cols=170  Identities=18%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHh-----------hhccCCc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL-----------GEQVGVP   72 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~-----------~~~~gv~   72 (403)
                      ++|+|+|+||+||||+|.+||.+|+++|++|++||+|++.+....-            +...           ....++.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~   81 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR   81 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence            6788899999999999999999999999999999999987544211            1110           0123566


Q ss_pred             eEeCCCCCC-----HHHHH--HHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HH
Q 015657           73 VYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ  141 (403)
Q Consensus        73 v~~~~~~~~-----~~~~~--~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~  141 (403)
                      +++.+....     ..+..  ...+..+.  ...||||||||||.+..+. +...+    ....+|.+++|+.+..  ..
T Consensus        82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~~----~~~~aD~viiv~~~~~~s~~  156 (269)
T 1cp2_A           82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMPI----REGKAQEIYIVASGEMMALY  156 (269)
T ss_dssp             EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHHH----HTTSCCEEEEEECSSHHHHH
T ss_pred             EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhhh----hHhhCCEEEEeecCchhhHH
Confidence            666543221     11111  11222221  3579999999999764321 11111    0113588888888732  23


Q ss_pred             HHH---HHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          142 EAA---ALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       142 ~~~---~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      .+.   ..+..+..  .+++.|+|+|+++..........+.+.++.|+  ++..+.
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v--~~~Ip~  210 (269)
T 1cp2_A          157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQL--IHFVPR  210 (269)
T ss_dssp             HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCE--EEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCcc--cccCCC
Confidence            332   33333322  45578999999986555556667778889887  344443

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=99.70  E-value=1.2e-16  Score=148.85  Aligned_cols=161  Identities=17%  Similarity=0.115  Sum_probs=105.3

Q ss_pred             CCEEEEEE-cCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHH-------------HHHH-------------h
Q 015657           14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAID-------------QLVI-------------L   65 (403)
Q Consensus        14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~-------------~l~~-------------~   65 (403)
                      ++++|+|+ ++||+||||+|.+||.+|+++ |++|++||+|++.+....             .+..             .
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~   82 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ   82 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence            46777777 559999999999999999998 999999999998433211             1110             0


Q ss_pred             hhccCCceEeCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--
Q 015657           66 GEQVGVPVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--  138 (403)
Q Consensus        66 ~~~~gv~v~~~~~~~~~-----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--  138 (403)
                      ....++.+++.+.....     .+.+.+.++.++ ..||+||||||+.+....      ..+  ...+|.+++|+.+.  
T Consensus        83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~------~~~--l~~ad~viiv~~~~~~  153 (245)
T 3ea0_A           83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVG------VWV--LEHLDELCIVTTPSLQ  153 (245)
T ss_dssp             EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTH------HHH--GGGCSEEEEEECSSHH
T ss_pred             ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHH------HHH--HHHCCEEEEEecCcHH
Confidence            11245667766443211     234567777775 589999999999875321      111  12248888888873  


Q ss_pred             cHHHHHHHHHHh---hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          139 TGQEAAALVTTF---NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       139 ~g~~~~~~~~~~---~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                      ....+......+   .......|+|+|+++...... ...+.+.++.|+
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~-~~~~~~~~~~~v  201 (245)
T 3ea0_A          154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT-SDEIEKVIGRPI  201 (245)
T ss_dssp             HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC-HHHHHHHHTSCE
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC-HHHHHHHhCCCe
Confidence            223333333333   333566899999998664432 356777889888

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=99.70  E-value=2.4e-16  Score=149.36  Aligned_cols=165  Identities=18%  Similarity=0.168  Sum_probs=102.2

Q ss_pred             CCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh---------------hccCCceEeCC
Q 015657           14 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------------EQVGVPVYTAG   77 (403)
Q Consensus        14 ~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~---------------~~~gv~v~~~~   77 (403)
                      .+++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.....+....               ...++.+++.+
T Consensus        17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~   96 (262)
T 2ph1_A           17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQ   96 (262)
T ss_dssp             CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGG
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEecc
Confidence            35566665 669999999999999999999999999999999876533221100               11233444332


Q ss_pred             CCC------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHH
Q 015657           78 TEV------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEA  143 (403)
Q Consensus        78 ~~~------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~  143 (403)
                      ...            .....+++.++.+.+..||||||||||.+....  ..    .......|.+++|+.+.  ....+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~--~~----~~~~~~aD~viiv~~~~~~s~~~~  170 (262)
T 2ph1_A           97 FLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP--LT----VMQDAKPTGVVVVSTPQELTAVIV  170 (262)
T ss_dssp             GGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH--HH----HHHHHCCSEEEEEECSSSCCHHHH
T ss_pred             ccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH--HH----HHhhccCCeEEEEecCccchHHHH
Confidence            111            012334444444433689999999999875311  11    11111358888888873  33444


Q ss_pred             HHHHHHhh-hcCCeeEEEEccCCCC------C----chhHHHHHHHHhCCCe
Q 015657          144 AALVTTFN-IEIGITGAILTKLDGD------S----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       144 ~~~~~~~~-~~~~i~GvIlNk~D~~------~----~~~~~~~~~~~~g~pi  184 (403)
                      ...+..+. ..+++.|+|+|+++..      .    ....+..+.+.++.|+
T Consensus       171 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  222 (262)
T 2ph1_A          171 EKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGF  222 (262)
T ss_dssp             HHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSE
T ss_pred             HHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCe
Confidence            44443332 2567889999999741      1    1234567778888886

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=99.69  E-value=3.9e-16  Score=147.28  Aligned_cols=166  Identities=19%  Similarity=0.226  Sum_probs=105.8

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHHHh--------hhccCCc
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVIL--------GEQVGVP   72 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~~~--------~~~~gv~   72 (403)
                      +++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+...             +.+...        ....+++
T Consensus         2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~   81 (263)
T 1hyq_A            2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVK   81 (263)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCE
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeE
Confidence            3566665 67999999999999999999999999999999654321             111100        0113456


Q ss_pred             eEeCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHH
Q 015657           73 VYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAA  145 (403)
Q Consensus        73 v~~~~~~~~~-----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~  145 (403)
                      +++.......     .+.+.+.++.+. ..||+||||||+.+...  ..    .+..  .+|.+++|+.+..  ...+..
T Consensus        82 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~~----~~~~--~ad~vi~v~~~~~~~~~~~~~  152 (263)
T 1hyq_A           82 VVPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS--AV----IAIA--AAQELLLVVNPEISSITDGLK  152 (263)
T ss_dssp             EEECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH--HH----HHHH--HSSEEEEEECSSHHHHHHHHH
T ss_pred             EEcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH--HH----HHHH--HCCEEEEEeCCChhHHHHHHH
Confidence            6663222111     234456666664 68999999999987521  11    1111  2478899988732  233333


Q ss_pred             HHHHhhh-cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657          146 LVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE  191 (403)
Q Consensus       146 ~~~~~~~-~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge  191 (403)
                      ....+.. ...+.|+|+|+++..........+.+.++.|+  ++..+
T Consensus       153 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip  197 (263)
T 1hyq_A          153 TKIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV--IGLIP  197 (263)
T ss_dssp             HHHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE--EEEEE
T ss_pred             HHHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCe--EEECC
Confidence            3333322 45678999999997655455666777788887  44443

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=99.69  E-value=6.6e-16  Score=148.13  Aligned_cols=170  Identities=18%  Similarity=0.191  Sum_probs=103.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHh-------------hhcc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL-------------GEQV   69 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~-------------~~~~   69 (403)
                      +++|+|+|+||+||||+|.+||.+|+++|++|++||+|++.+.....            +...             ....
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~   81 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYG   81 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGG
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCC
Confidence            47888899999999999999999999999999999999987544211            1110             0123


Q ss_pred             CCceEeCCCCCC-----HHHHH--HHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-
Q 015657           70 GVPVYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-  139 (403)
Q Consensus        70 gv~v~~~~~~~~-----~~~~~--~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-  139 (403)
                      ++.+++.+....     ..+..  .+.++.+.  ...||||||||||.+..+. +...+    ....+|.+++|+.+.. 
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~~~----~~~~aD~viiv~~~~~~  156 (289)
T 2afh_E           82 GVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAMPI----RENKAQEIYIVCSGEMM  156 (289)
T ss_dssp             GCEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTHHH----HTTCCCEEEEEECSSHH
T ss_pred             CeEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhhhh----hhhhCCEEEEEecCCHH
Confidence            455665543211     01111  12233332  3579999999999764322 11111    1123588888888732 


Q ss_pred             -HHHHH---HHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657          140 -GQEAA---ALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE  191 (403)
Q Consensus       140 -g~~~~---~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge  191 (403)
                       ...+.   ..+..+..  .+++.|+|+|+++..........+.+.++.|+  ++..+
T Consensus       157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~g~~~--l~~Ip  212 (289)
T 2afh_E          157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQM--IHFVP  212 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCE--EEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHHHHHHHHHHHcCccc--cccCC
Confidence             22222   33333322  45578999999975544455666777888887  34443

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=99.69  E-value=3.1e-16  Score=153.03  Aligned_cols=169  Identities=16%  Similarity=0.174  Sum_probs=103.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHHh--------------hh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVIL--------------GE   67 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~~--------------~~   67 (403)
                      .+.+||+|+||||+||||+|.|||.+|++.|+||++||+|++.+...           +.....              ..
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~  125 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG  125 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeec
Confidence            35799999999999999999999999999999999999998764431           111000              01


Q ss_pred             ccCCceEeCCCCCC----HHHHHHHHHHHH----HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-
Q 015657           68 QVGVPVYTAGTEVK----PSQIAKQGLEEA----KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-  138 (403)
Q Consensus        68 ~~gv~v~~~~~~~~----~~~~~~~~l~~~----~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-  138 (403)
                      ..++.+.+.+....    ........+..+    .++.||++++|||+.+....-.       ..+..++.+++|+.+. 
T Consensus       126 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-------~al~aAd~viIvt~~e~  198 (314)
T 3fwy_A          126 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-------APLQHADQAVVVTANDF  198 (314)
T ss_dssp             GGGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-------GGGGTCSEEEEEECSSH
T ss_pred             CCCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-------hHHhhCCeEEEEeCCcH
Confidence            12344555433211    011111122221    2468999999999876432110       0122358899998872 


Q ss_pred             -cHHHHHHH---HHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657          139 -TGQEAAAL---VTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       139 -~g~~~~~~---~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                       ..+.+.++   ++.+..  ..++.|+|+|+.+..   ..+..+.+.++.++  ++..+..
T Consensus       199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~---~~v~~~a~~~~~~~--lg~IP~d  254 (314)
T 3fwy_A          199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRR--LAHMPDL  254 (314)
T ss_dssp             HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCE--EEEECCC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch---hHHHHHHHHhCCeE--EEEecCc
Confidence             22333333   333433  345689999987653   34566778888888  5655443

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=99.67  E-value=2.7e-16  Score=145.84  Aligned_cols=167  Identities=22%  Similarity=0.291  Sum_probs=104.4

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------------HHHHHhh---h------ccCC
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVILG---E------QVGV   71 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------------~~l~~~~---~------~~gv   71 (403)
                      +++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+...             +.+....   +      ..++
T Consensus         2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l   81 (237)
T 1g3q_A            2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNV   81 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTE
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCE
Confidence            3567776 55999999999999999999999999999999754321             1111000   0      1344


Q ss_pred             ceEeCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHH
Q 015657           72 PVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA  144 (403)
Q Consensus        72 ~v~~~~~~~~~-----~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~  144 (403)
                      .+++.......     .+.+.+.++.++ ..||+||||||+.+..+.      ..+.  ..+|.+++|+.+..  ...+.
T Consensus        82 ~~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~------~~~~--~~ad~vi~v~~~~~~~~~~~~  152 (237)
T 1g3q_A           82 YVLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLDA------MSAM--LSGEEALLVTNPEISCLTDTM  152 (237)
T ss_dssp             EEECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHHH------HHHH--TTCSEEEEEECSCHHHHHHHH
T ss_pred             EEEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHHH------HHHH--HHCCeEEEEecCCcccHHHHH
Confidence            45552211111     223455566664 689999999999875211      1111  23478889988742  23344


Q ss_pred             HHHHHhhh-cCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCC
Q 015657          145 ALVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       145 ~~~~~~~~-~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      .....+.. ...+.|+|+|+++..........+.+.++.|+  ++..+.
T Consensus       153 ~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~  199 (237)
T 1g3q_A          153 KVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL--LAVIPE  199 (237)
T ss_dssp             HHHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE--EEEEEC
T ss_pred             HHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccc--eeeCCC
Confidence            44443332 45678999999987654444566777788887  444433

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=99.67  E-value=5.7e-16  Score=145.45  Aligned_cols=168  Identities=16%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH--------------------H-h---hhcc
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV--------------------I-L---GEQV   69 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~--------------------~-~---~~~~   69 (403)
                      +++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.....+.                    . .   ....
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~   81 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTE   81 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSST
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCC
Confidence            4677776 559999999999999999999999999999996543321110                    0 0   0113


Q ss_pred             CCceEeCCCC----CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHHH
Q 015657           70 GVPVYTAGTE----VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEA  143 (403)
Q Consensus        70 gv~v~~~~~~----~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~~  143 (403)
                      ++.+++.+..    ......+.+.++.++...||+||||||+.+...  ..    .+  ...+|.+++|+++.  ....+
T Consensus        82 ~l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~--~~----~~--l~~ad~vi~v~~~~~~s~~~~  153 (260)
T 3q9l_A           82 NLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--AL----MA--LYFADEAIITTNPEVSSVRDS  153 (260)
T ss_dssp             TEEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHH--HH----HH--HHTCSEEEEEECSSHHHHHHH
T ss_pred             CEEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHH--HH----HH--HHhCCEEEEEecCChhHHHHH
Confidence            5566655432    123345677778875338999999999987521  11    11  12358889998883  22344


Q ss_pred             HHHHHHhhhc---------CCeeEEEEccCCCCCc--h--hHHHHHHHHhCCCeEEeeccCC
Q 015657          144 AALVTTFNIE---------IGITGAILTKLDGDSR--G--GAALSVKEVSGKPIKLVGRGER  192 (403)
Q Consensus       144 ~~~~~~~~~~---------~~i~GvIlNk~D~~~~--~--~~~~~~~~~~g~pi~fig~ge~  192 (403)
                      ......+...         ....++|+|+++....  .  -....+.+.++.|+  ++..+.
T Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ip~  213 (260)
T 3q9l_A          154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL--VGVIPE  213 (260)
T ss_dssp             HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEE--EEEEEC
T ss_pred             HHHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCce--EEecCC
Confidence            4444433321         1467999999985421  1  11356777888887  454443

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=99.67  E-value=3.7e-16  Score=150.32  Aligned_cols=159  Identities=16%  Similarity=0.185  Sum_probs=100.2

Q ss_pred             CEEEEEE---cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh-----------------------c
Q 015657           15 PTVILLA---GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-----------------------Q   68 (403)
Q Consensus        15 ~~iI~v~---G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~-----------------------~   68 (403)
                      +++|+|+   ++||+||||+|.+||.+|+++|++|++||+|++.+....-....+.                       .
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  113 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLT  113 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESS
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccC
Confidence            3455555   4899999999999999999999999999999998653211000000                       1


Q ss_pred             cCCceEeCCCCCCH-------------HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEE
Q 015657           69 VGVPVYTAGTEVKP-------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV  135 (403)
Q Consensus        69 ~gv~v~~~~~~~~~-------------~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVv  135 (403)
                      .++++++.+.....             ...+++.++.++ ..||+|||||||.+...  ...   .+.   .+|.+++|+
T Consensus       114 ~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~--~~~---~l~---~aD~viiv~  184 (298)
T 2oze_A          114 DNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVY--TNN---AIV---ASDYVMIPL  184 (298)
T ss_dssp             SSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHH--HHH---HHH---HCSEEEEEE
T ss_pred             CCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHH--HHH---HHH---HCCeEEEEe
Confidence            24456655432211             123455566653 68999999999987531  111   111   248889998


Q ss_pred             ecc--cHHHHHH---HHH----HhhhcCCeeEEEEccCCCCCc--hhHHHHHHHHhCC
Q 015657          136 DAM--TGQEAAA---LVT----TFNIEIGITGAILTKLDGDSR--GGAALSVKEVSGK  182 (403)
Q Consensus       136 da~--~g~~~~~---~~~----~~~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~  182 (403)
                      .+.  ....+..   .+.    .++..+++.|+|+|+++....  ...+..+.+.++.
T Consensus       185 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~  242 (298)
T 2oze_A          185 QAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE  242 (298)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence            872  2222222   222    234467789999999997653  2445566777765

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=99.67  E-value=7.9e-16  Score=147.07  Aligned_cols=149  Identities=22%  Similarity=0.332  Sum_probs=100.6

Q ss_pred             CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------h------------hhcc
Q 015657           12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------L------------GEQV   69 (403)
Q Consensus        12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~------------~~~~   69 (403)
                      ..++++|+|++. +|+||||+|.+||..|++.|+||++||+|+++|.....+..         +            ....
T Consensus        79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~  158 (271)
T 3bfv_A           79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIE  158 (271)
T ss_dssp             TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSST
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCC
Confidence            356788999866 99999999999999999999999999999988765332110         0            0114


Q ss_pred             CCceEeCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccH-HhHHHHHHHhhhcCCceEEEEEec--ccH
Q 015657           70 GVPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDK-AMMDELKDVKRVLNPTEVLLVVDA--MTG  140 (403)
Q Consensus        70 gv~v~~~~~-~~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~-~l~~el~~i~~~~~~~~vllVvda--~~g  140 (403)
                      ++.+++.+. ...+.+.     +.+.++.++ ..||+||||||+.+.... ..+.      ..  +|.+++|+.+  ...
T Consensus       159 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~------~~--aD~vilVv~~~~~~~  229 (271)
T 3bfv_A          159 DLDVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFS------KF--TGNVVYVVNSENNNK  229 (271)
T ss_dssp             TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHHH------HH--HCEEEEEEETTSCCH
T ss_pred             CEEEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHHH------HH--CCEEEEEEeCCCCcH
Confidence            566776654 2345443     466777775 689999999999875422 1111      11  3789999988  333


Q ss_pred             HHHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657          141 QEAAALVTTFN-IEIGITGAILTKLDGDSR  169 (403)
Q Consensus       141 ~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+......+. ...++.|+|+|+++....
T Consensus       230 ~~~~~~~~~l~~~~~~~~GvVlN~~~~~~~  259 (271)
T 3bfv_A          230 DEVKKGKELIEATGAKLLGVVLNRMPKDKS  259 (271)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEEEEECC---
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCcCCCC
Confidence            44444444443 356789999999986543

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=99.66  E-value=8.8e-16  Score=147.89  Aligned_cols=150  Identities=23%  Similarity=0.312  Sum_probs=102.9

Q ss_pred             CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------h------------hhcc
Q 015657           12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------L------------GEQV   69 (403)
Q Consensus        12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~------------~~~~   69 (403)
                      ..++++|+|++. +|+||||+|++||..|++.|++|++||+|+++|.....+..         +            ....
T Consensus        89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~  168 (286)
T 3la6_A           89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIA  168 (286)
T ss_dssp             TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence            345678888865 99999999999999999999999999999988765332210         0            0113


Q ss_pred             CCceEeCCCC-CCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHH
Q 015657           70 GVPVYTAGTE-VKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQ  141 (403)
Q Consensus        70 gv~v~~~~~~-~~~~~~-----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~  141 (403)
                      ++.+++.+.. ..+.+.     +.+.++.++ ..||+||||||+.+.....     ..+.  ..+|.+++|+.+  ....
T Consensus       169 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da-----~~l~--~~aD~vllVv~~~~~~~~  240 (286)
T 3la6_A          169 KFDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDA-----AIVG--RHVGTTLMVARYAVNTLK  240 (286)
T ss_dssp             TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHH-----HHHT--TTCSEEEEEEETTTSBHH
T ss_pred             CEEEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHH-----HHHH--HHCCeEEEEEeCCCCcHH
Confidence            4566665543 345543     467777775 6899999999998764221     1111  124889999988  3334


Q ss_pred             HHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657          142 EAAALVTTFN-IEIGITGAILTKLDGDSR  169 (403)
Q Consensus       142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~~~  169 (403)
                      .+......+. ...++.|+|+|+++....
T Consensus       241 ~~~~~~~~l~~~g~~~~GvVlN~v~~~~~  269 (286)
T 3la6_A          241 EVETSLSRFEQNGIPVKGVILNSIFRRAS  269 (286)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence            4444444443 357789999999986544

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=99.66  E-value=5.3e-16  Score=146.93  Aligned_cols=172  Identities=17%  Similarity=0.221  Sum_probs=101.2

Q ss_pred             ccCCCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh----------------------
Q 015657           10 FAKSRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG----------------------   66 (403)
Q Consensus        10 ~~~~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~----------------------   66 (403)
                      +...++++|+|+ ++||+||||+|.+||.+|+ +|++|++||+|++.+....-.....                      
T Consensus        22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  100 (267)
T 3k9g_A           22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDID  100 (267)
T ss_dssp             ----CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGG
T ss_pred             CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHH
Confidence            345667888887 5599999999999999999 9999999999998865422110000                      


Q ss_pred             -----hccCCceEeCCCCC---------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEE
Q 015657           67 -----EQVGVPVYTAGTEV---------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL  132 (403)
Q Consensus        67 -----~~~gv~v~~~~~~~---------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vl  132 (403)
                           ...++.+++.+...         .....+++.++.+. ..||+||||||+.+..  ...    ..  ...+|.++
T Consensus       101 ~~i~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~--~~~----~~--l~~aD~vi  171 (267)
T 3k9g_A          101 STIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDV--TLK----NA--LLCSDYVI  171 (267)
T ss_dssp             GGCEEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSH--HHH----HH--HTTCSEEE
T ss_pred             HhhccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccH--HHH----HH--HHHCCeEE
Confidence                 01344555543211         12345667777764 7899999999998742  111    11  12258888


Q ss_pred             EEEecc-cH-HHHHHHHH---HhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657          133 LVVDAM-TG-QEAAALVT---TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       133 lVvda~-~g-~~~~~~~~---~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      +|+.+. .. ..+.....   .+....++ ++|+|+++.......+....+. +.|+  ++..+..+.
T Consensus       172 vv~~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~~~~~~~~~~l~~-~~~~--~~~Ip~~~~  235 (267)
T 3k9g_A          172 IPMTAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKNRTHKTLFEILKT-KDRF--LGTISERED  235 (267)
T ss_dssp             EEEESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTTCSCCHHHHHHTT-STTE--EEEEEC---
T ss_pred             EEeCCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCcchHHHHHHHHhc-Cccc--ceecCcHHH
Confidence            888873 22 33333333   23333344 5999999654444333333322 5555  565555444

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=99.65  E-value=3.6e-16  Score=147.54  Aligned_cols=163  Identities=25%  Similarity=0.305  Sum_probs=97.8

Q ss_pred             CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------hhh---------ccCCce
Q 015657           13 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LGE---------QVGVPV   73 (403)
Q Consensus        13 ~~~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~~~---------~~gv~v   73 (403)
                      .++++|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.. ..+..         +..         ..++.+
T Consensus         4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~v   82 (257)
T 1wcv_1            4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHL   82 (257)
T ss_dssp             -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEE
T ss_pred             CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEE
Confidence            456778787 5699999999999999999999999999999986432 11100         000         134556


Q ss_pred             EeCCCCCCHHH--HHH--HHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HH---H
Q 015657           74 YTAGTEVKPSQ--IAK--QGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE---A  143 (403)
Q Consensus        74 ~~~~~~~~~~~--~~~--~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~---~  143 (403)
                      ++.+......+  ...  ..+..+. ...||+||||||+.+...  ...   .+   ..+|.+++|+.+...  ..   .
T Consensus        83 lp~~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~--~~~---~l---~~aD~viiv~~~~~~s~~~~~~~  154 (257)
T 1wcv_1           83 LPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPL--TLN---AL---AAAEGVVVPVQAEYYALEGVAGL  154 (257)
T ss_dssp             ECCCTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHH--HHH---HH---HHCSEEEEEEESSTHHHHHHHHH
T ss_pred             EeCChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHH--HHH---HH---HHCCeEEEEecCchHHHHHHHHH
Confidence            65543221111  000  1222221 157999999999987521  111   11   124889999987322  22   2


Q ss_pred             HHHHHHh----hhcCCeeEEEEccCCCCCch--hHHHHHHHHhCCCe
Q 015657          144 AALVTTF----NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPI  184 (403)
Q Consensus       144 ~~~~~~~----~~~~~i~GvIlNk~D~~~~~--~~~~~~~~~~g~pi  184 (403)
                      ...+..+    +..+++.|+|+|+++.....  .....+.+.++.|+
T Consensus       155 ~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~  201 (257)
T 1wcv_1          155 LATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV  201 (257)
T ss_dssp             HHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred             HHHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence            2233322    33566789999999865432  23445666677765

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=99.65  E-value=1.4e-15  Score=147.41  Aligned_cols=149  Identities=27%  Similarity=0.350  Sum_probs=101.5

Q ss_pred             CCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHH---------h------------hhcc
Q 015657           12 KSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------L------------GEQV   69 (403)
Q Consensus        12 ~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~---------~------------~~~~   69 (403)
                      ..++++|+|++. +|+||||+|.+||..|++.|+||++||+|+++|.....+..         +            ....
T Consensus       101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~  180 (299)
T 3cio_A          101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKG  180 (299)
T ss_dssp             SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTT
T ss_pred             CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCC
Confidence            456788888876 99999999999999999999999999999987665332210         0            0124


Q ss_pred             CCceEeCCC-CCCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--ccHH
Q 015657           70 GVPVYTAGT-EVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQ  141 (403)
Q Consensus        70 gv~v~~~~~-~~~~~~-----~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--~~g~  141 (403)
                      ++.+++.+. ...+.+     .+.+.++.++ ..||+|||||||.+......     .+.  ..++.+++|+.+  ....
T Consensus       181 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~--~~ad~vilV~~~~~~~~~  252 (299)
T 3cio_A          181 GFDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA-----VVG--RSVGTSLLVARFGLNTAK  252 (299)
T ss_dssp             TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-----HHG--GGCSEEEEEEETTTSCTT
T ss_pred             CEEEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHH-----HHH--HHCCEEEEEEcCCCChHH
Confidence            566776654 234443     3466777775 68999999999987542211     111  124888999987  2334


Q ss_pred             HHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657          142 EAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus       142 ~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      .+...+..+. ...++.|+|+|+++...
T Consensus       253 ~~~~~~~~l~~~~~~~~GvVlN~~~~~~  280 (299)
T 3cio_A          253 EVSLSMQRLEQAGVNIKGAILNGVIKRA  280 (299)
T ss_dssp             HHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence            4444444443 35678999999998654

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=99.63  E-value=2.8e-15  Score=139.34  Aligned_cols=155  Identities=15%  Similarity=0.107  Sum_probs=95.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH-------------------HHhh------------
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------------------VILG------------   66 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l-------------------~~~~------------   66 (403)
                      |+|+|+||+||||+|.+||.+|+++|+||++||+|++ +.....+                   ....            
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK   81 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence            5559999999999999999999999999999999997 3321111                   0000            


Q ss_pred             ----------hccCCce-EeCCC------CCC-HH-HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC
Q 015657           67 ----------EQVGVPV-YTAGT------EVK-PS-QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN  127 (403)
Q Consensus        67 ----------~~~gv~v-~~~~~------~~~-~~-~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~  127 (403)
                                ...++.+ ++.+.      ... +. ..+++.++.+....||+||||||+.+....  ..    +  ...
T Consensus        82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~--~~----~--l~~  153 (254)
T 3kjh_A           82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLT--RG----T--AKA  153 (254)
T ss_dssp             CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCC--HH----H--HTT
T ss_pred             hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHH--HH----H--HHH
Confidence                      0112223 33221      111 22 457888888733799999999999875421  11    1  123


Q ss_pred             CceEEEEEecc-cHHHHHHHHHHhhh--cCCeeEEEEccCCCCCchhHHHHHHHHhC-CCe
Q 015657          128 PTEVLLVVDAM-TGQEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSG-KPI  184 (403)
Q Consensus       128 ~~~vllVvda~-~g~~~~~~~~~~~~--~~~i~GvIlNk~D~~~~~~~~~~~~~~~g-~pi  184 (403)
                      +|.+++|+++. ........+..+..  .....++|+|+++..   .....+.+.++ .++
T Consensus       154 aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~---~~~~~~~~~~~~~~~  211 (254)
T 3kjh_A          154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI---KEEKLIKKHLPEDKI  211 (254)
T ss_dssp             CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH---HHHHHHHHHSCGGGE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh---hHHHHHHHHhcCCcc
Confidence            48889998873 22222222222322  334578999999843   23455666776 444

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=99.59  E-value=6.7e-14  Score=128.57  Aligned_cols=175  Identities=17%  Similarity=0.131  Sum_probs=101.0

Q ss_pred             EEEEEEc-CCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh---------hhHHHHHHhhhc------cCCceEeCCCC
Q 015657           16 TVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---------AAIDQLVILGEQ------VGVPVYTAGTE   79 (403)
Q Consensus        16 ~iI~v~G-~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp---------~~~~~l~~~~~~------~gv~v~~~~~~   79 (403)
                      ++|+|++ +||+||||+|.+||.+|+++|+||+++|.....+         .....+......      .....+.....
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTS   81 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESSCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCCCCC
Confidence            4666765 5999999999999999999999999986321111         111112111110      01111111111


Q ss_pred             ----------CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc-H-HHHHHHH
Q 015657           80 ----------VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAAALV  147 (403)
Q Consensus        80 ----------~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~-g-~~~~~~~  147 (403)
                                ......+++.++.+. ++||+|||||||++............+..... +++++|+.+.. + .++...+
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~-~~vi~v~~~~~~~~~~~~~~i  159 (224)
T 1byi_A           82 PHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQ-LPVILVVGVKLGCINHAMLTA  159 (224)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHT-CCEEEEEECSTTHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhC-CCEEEEecCCCCcHHHHHHHH
Confidence                      012344566777774 68999999999987531100001122222222 56888888732 2 3344444


Q ss_pred             HHh-hhcCCeeEEEEccCCCCCc--hhHHHHHHHHhCCCeEEeeccCCcC
Q 015657          148 TTF-NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERME  194 (403)
Q Consensus       148 ~~~-~~~~~i~GvIlNk~D~~~~--~~~~~~~~~~~g~pi~fig~ge~v~  194 (403)
                      +.+ +..+++.|+|+|+++....  ......+.+.++.|+  ++..+...
T Consensus       160 ~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~v--l~~Ip~~~  207 (224)
T 1byi_A          160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPL--LGEIPWLA  207 (224)
T ss_dssp             HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCE--EEEECCCT
T ss_pred             HHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCE--EEECCCCc
Confidence            333 4567889999999986532  344556667788887  45555544

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=99.58  E-value=4.4e-14  Score=129.52  Aligned_cols=143  Identities=20%  Similarity=0.217  Sum_probs=90.4

Q ss_pred             EEEE-EcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v-~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      +|+| .++||+||||+|.+||.+|+++| +|++||+|++.+.. ..+..  .....++++.+           .++.+ .
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~--~~l~~~vi~~~-----------~l~~l-~   65 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR--GSLPFKVVDER-----------QAAKY-A   65 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH--SCCSSEEEEGG-----------GHHHH-G
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC--CCCCcceeCHH-----------HHHHh-h
Confidence            4555 57799999999999999999999 99999999997554 22222  11111233211           34555 3


Q ss_pred             CCCcEEEEeCCCC-ccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHHHHHHhhh--cCCeeEEEEccCCCCC-c
Q 015657           96 KNVDVVIVDTAGR-LQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAALVTTFNI--EIGITGAILTKLDGDS-R  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~-l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~~~~~~~~--~~~i~GvIlNk~D~~~-~  169 (403)
                      ..||+||||||+. .....  .    .+  ...+|.+++|+.+..  ...+......+..  ..+ .++|+|+++... .
T Consensus        66 ~~yD~viiD~p~~~~~~~~--~----~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~  136 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDEDL--E----AL--ADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSK  136 (209)
T ss_dssp             GGCSEEEEEEECCCSSSHH--H----HH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSC
T ss_pred             hcCCEEEEeCCCCcCcHHH--H----HH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccch
Confidence            6899999999998 54211  1    11  113478888888732  2333333433333  344 689999999765 3


Q ss_pred             -hhHHHHHHHHhCCCe
Q 015657          170 -GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 -~~~~~~~~~~~g~pi  184 (403)
                       ...+....+.+|.|+
T Consensus       137 ~~~~~~~~l~~~g~~v  152 (209)
T 3cwq_A          137 DGDEARQLLTTAGLPL  152 (209)
T ss_dssp             HHHHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHHcCCch
Confidence             333444445577776

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=99.56  E-value=1.2e-13  Score=136.57  Aligned_cols=42  Identities=36%  Similarity=0.526  Sum_probs=37.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ...++++++|+||+||||+|++||.+|+++|+||++||+|++
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   65 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA   65 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            345666777999999999999999999999999999999994

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=99.55  E-value=4.3e-14  Score=135.59  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh-------h--ccCC-ceEeCCC--CCC
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG-------E--QVGV-PVYTAGT--EVK   81 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~-------~--~~gv-~v~~~~~--~~~   81 (403)
                      +++|+|+ ++||+||||+|.+||.+|+++|++|++||+|+..+.....+....       .  ..++ ++++...  ...
T Consensus         4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~   83 (286)
T 2xj4_A            4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAE   83 (286)
T ss_dssp             CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTT
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcC
Confidence            4677776 569999999999999999999999999999994444433322111       0  1123 3333210  000


Q ss_pred             -----HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           82 -----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        82 -----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                           ....+.+.++.++ ..||+||||||+.+..  ...    .+  ...+|.+++|+.+
T Consensus        84 ~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~--~~~----~~--l~~aD~viiv~~~  135 (286)
T 2xj4_A           84 RPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSA--ITR----MA--HGRADLVVTPMND  135 (286)
T ss_dssp             SCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCH--HHH----HH--HHTCSEEEEEEES
T ss_pred             hhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccH--HHH----HH--HHHCCEEEEEEcC
Confidence                 1124566677764 6899999999998742  111    11  1234888888876

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=99.54  E-value=4.3e-14  Score=140.32  Aligned_cols=43  Identities=37%  Similarity=0.458  Sum_probs=38.5

Q ss_pred             EEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           16 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        16 ~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      ++|+|+ ++||+||||+|.+||..|++.|+||++||+|++.+..
T Consensus         2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~   45 (361)
T 3pg5_A            2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT   45 (361)
T ss_dssp             EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred             eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence            567776 6699999999999999999999999999999997654

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=99.50  E-value=8e-14  Score=139.88  Aligned_cols=164  Identities=20%  Similarity=0.227  Sum_probs=97.1

Q ss_pred             CCCCEEEEEE-cCCCCcHHHHHHHHHHHHH------hCCCcEEEEeccCCChhhH----------------HHHHH----
Q 015657           12 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAAI----------------DQLVI----   64 (403)
Q Consensus        12 ~~~~~iI~v~-G~gGsGKTTla~~LA~~L~------~~G~kVllVd~D~~rp~~~----------------~~l~~----   64 (403)
                      ..++++|+|+ ++||+||||+|++||.+|+      ++|++|++||+|++.+...                +.+..    
T Consensus       105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~  184 (398)
T 3ez2_A          105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSR  184 (398)
T ss_dssp             CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCccccccccccHHHHHHhhccc
Confidence            3457888887 6699999999999999999      4699999999999763221                00100    


Q ss_pred             ---h------hhccCCceEeCCCCCC-----HH--------------HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhH
Q 015657           65 ---L------GEQVGVPVYTAGTEVK-----PS--------------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM  116 (403)
Q Consensus        65 ---~------~~~~gv~v~~~~~~~~-----~~--------------~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~  116 (403)
                         .      ....++.+++.+....     ..              ..+++.++.+. .+|||||||||+.+..  ...
T Consensus       185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~--~~~  261 (398)
T 3ez2_A          185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDA--FLK  261 (398)
T ss_dssp             HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSH--HHH
T ss_pred             cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccH--HHH
Confidence               0      0124566666654311     00              12245566664 7899999999998853  111


Q ss_pred             HHHHHHhhhcCCceEEEEEecccH---------HH---HHHHHHHhhhcCCeeEEEE--ccCCCCC-chhHHHHHHHHhC
Q 015657          117 DELKDVKRVLNPTEVLLVVDAMTG---------QE---AAALVTTFNIEIGITGAIL--TKLDGDS-RGGAALSVKEVSG  181 (403)
Q Consensus       117 ~el~~i~~~~~~~~vllVvda~~g---------~~---~~~~~~~~~~~~~i~GvIl--Nk~D~~~-~~~~~~~~~~~~g  181 (403)
                      ..+      ..+|.+++|+.+...         ..   ....++.+.....+.|+|.  |+.+... .......+.+.+|
T Consensus       262 ~~l------~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~~~~~~~~~l~~~~g  335 (398)
T 3ez2_A          262 NAL------ASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFG  335 (398)
T ss_dssp             HHH------HHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCHHHHHHHHHHHHHHG
T ss_pred             HHH------HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCchhHHHHHHHHHHHhc
Confidence            111      124888888876221         11   1222233344566666654  4444322 2234455667788


Q ss_pred             CCe
Q 015657          182 KPI  184 (403)
Q Consensus       182 ~pi  184 (403)
                      .++
T Consensus       336 ~~v  338 (398)
T 3ez2_A          336 GDM  338 (398)
T ss_dssp             GGB
T ss_pred             ccc
Confidence            766

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.50  E-value=4.7e-13  Score=130.89  Aligned_cols=40  Identities=35%  Similarity=0.600  Sum_probs=37.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .++++++|+||+||||+|++||.+|+++|+||++||+|+.
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   53 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA   53 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4777778999999999999999999999999999999994

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=99.49  E-value=4.1e-13  Score=126.78  Aligned_cols=176  Identities=17%  Similarity=0.208  Sum_probs=107.4

Q ss_pred             ccCCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEe-----ccCCChhhHHHHHHhhhccCCc----eEeCCCC
Q 015657           10 FAKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVYRPAAIDQLVILGEQVGVP----VYTAGTE   79 (403)
Q Consensus        10 ~~~~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd-----~D~~rp~~~~~l~~~~~~~gv~----v~~~~~~   79 (403)
                      ++....+.++|+|. +|+||||+++.|+++|+++|++|..+.     +.+...+. ..+   ....+++    .+.....
T Consensus        21 ~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~-~~~---~~~~g~~~~~~~~~~~~p   96 (251)
T 3fgn_A           21 YFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDL-AEV---GRLAGVTQLAGLARYPQP   96 (251)
T ss_dssp             -CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHH-HHH---HHHHCCCEEEEEEECSSS
T ss_pred             hcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHH-HHH---HHHcCCCCCCCCeeECCC
Confidence            34556788999999 899999999999999999999999876     21111111 111   1112221    1211111


Q ss_pred             CC-------------HHHHHHHHHHHHHhCCCcEEEEeCCCCcccc--HHhHHHHHHHhhhcCCceEEEEEecccH--HH
Q 015657           80 VK-------------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDELKDVKRVLNPTEVLLVVDAMTG--QE  142 (403)
Q Consensus        80 ~~-------------~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d--~~l~~el~~i~~~~~~~~vllVvda~~g--~~  142 (403)
                      ..             ..+.+.+.+..+ ..+||+||||++|++...  ... ....++.+.+. .++++|+++..+  ..
T Consensus        97 ~sP~~aa~~~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~-~~~adla~~l~-~pVILV~~~~~g~i~~  173 (251)
T 3fgn_A           97 MAPAAAAEHAGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPG-VTLRDVAVDVA-AAALVVVTADLGTLNH  173 (251)
T ss_dssp             SCHHHHHHHTTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTT-EEHHHHHHHTT-CEEEEEECSSTTHHHH
T ss_pred             CChHHHHHHcCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCccc-chHHHHHHHcC-CCEEEEEcCCCccHHH
Confidence            11             223455556655 368999999999988541  210 11234555555 899999999533  23


Q ss_pred             HHHHHHH-hhhcCCeeEEEEccCCCCC--chhHHHHHHHHhCCCeEEeeccCCcCC
Q 015657          143 AAALVTT-FNIEIGITGAILTKLDGDS--RGGAALSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       143 ~~~~~~~-~~~~~~i~GvIlNk~D~~~--~~~~~~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      +...... ....+++.|+|+|++..+.  .........+.. .|+  +|..|..+.
T Consensus       174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpv--LG~iP~~~~  226 (251)
T 3fgn_A          174 TKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMV--RAALPAGAA  226 (251)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCE--EEEEETTGG
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCE--EEEeeCCCC
Confidence            3333332 2567899999999996432  122234444555 887  888877654

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=99.48  E-value=8.7e-14  Score=139.91  Aligned_cols=164  Identities=17%  Similarity=0.225  Sum_probs=87.5

Q ss_pred             CCCCEEEEEE-cCCCCcHHHHHHHHHHHHH------hCCCcEEEEeccCCChhh----------------HHHHHH----
Q 015657           12 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAA----------------IDQLVI----   64 (403)
Q Consensus        12 ~~~~~iI~v~-G~gGsGKTTla~~LA~~L~------~~G~kVllVd~D~~rp~~----------------~~~l~~----   64 (403)
                      ..++++|+|+ ++||+||||+|++||.+|+      ++|++|++||+|++....                .+.+..    
T Consensus       108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~  187 (403)
T 3ez9_A          108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGSILETAAQAMLNNLDA  187 (403)
T ss_dssp             SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----------CCHHHHHHHTCCH
T ss_pred             CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCcccCcccccHHHHHHhcccc
Confidence            3467888877 6799999999999999999      679999999999876321                000100    


Q ss_pred             ---h------hhccCCceEeCCCCCC-----HHH--------------HHHHHHHHHHhCCCcEEEEeCCCCccccHHhH
Q 015657           65 ---L------GEQVGVPVYTAGTEVK-----PSQ--------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM  116 (403)
Q Consensus        65 ---~------~~~~gv~v~~~~~~~~-----~~~--------------~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~  116 (403)
                         .      ....|+.+++.+....     ...              ..+..++.+ +.+|||||||||+.+..  ...
T Consensus       188 ~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-~~~yD~VIID~pP~~~~--~~~  264 (403)
T 3ez9_A          188 ETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRV-ADDYDFIFIDTGPHLDP--FLL  264 (403)
T ss_dssp             HHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGS-GGGCSEEEEEECSSCSH--HHH
T ss_pred             cccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHH-hhcCCEEEEECCCCccH--HHH
Confidence               0      0124566666654311     000              112333444 36899999999998852  111


Q ss_pred             HHHHHHhhhcCCceEEEEEecccH---------H---HHHHHHHHhhhcCCeeEE--EEccCCCCCch-hHHHHHHHHhC
Q 015657          117 DELKDVKRVLNPTEVLLVVDAMTG---------Q---EAAALVTTFNIEIGITGA--ILTKLDGDSRG-GAALSVKEVSG  181 (403)
Q Consensus       117 ~el~~i~~~~~~~~vllVvda~~g---------~---~~~~~~~~~~~~~~i~Gv--IlNk~D~~~~~-~~~~~~~~~~g  181 (403)
                      ..+      ..+|.+++|+.+...         .   .....++.+.....+.|+  ++|+++..... .....+.+.+|
T Consensus       265 ~al------~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~~~~~~~~~~~~~~g  338 (403)
T 3ez9_A          265 NGL------AASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKRDHETSHSLAREVYA  338 (403)
T ss_dssp             HHH------HHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             HHH------HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCchhHHHHHHHHHHHhh
Confidence            111      124888888876321         1   112222333445666664  66777743222 33355666789


Q ss_pred             CCe
Q 015657          182 KPI  184 (403)
Q Consensus       182 ~pi  184 (403)
                      .++
T Consensus       339 ~~v  341 (403)
T 3ez9_A          339 SNI  341 (403)
T ss_dssp             TSE
T ss_pred             Hhh
Confidence            887

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=99.48  E-value=1.7e-12  Score=127.28  Aligned_cols=43  Identities=35%  Similarity=0.434  Sum_probs=38.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ....++++++|+||+||||+|++||..|+++|+||++||+|++
T Consensus        16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            3445777788999999999999999999999999999999987

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.47  E-value=5e-13  Score=132.30  Aligned_cols=147  Identities=19%  Similarity=0.233  Sum_probs=88.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHH-------HHHHhhhccCCceEeCCCCCCH--
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------QLVILGEQVGVPVYTAGTEVKP--   82 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~-------~l~~~~~~~gv~v~~~~~~~~~--   82 (403)
                      ..++.+|+++|.+|+||||++.+|+..++..|++|+++++|+..+....       .........++.+.........  
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG  155 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence            3467889999999999999999999999999999999999988765211       1112222334444444332221  


Q ss_pred             -HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           83 -SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        83 -~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                       ....++.+..+...++|++||||||.......       +  .-.+|.+++|+|+..+........... .. ...+|+
T Consensus       156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~-------~--~~~aD~vl~V~d~~~~~~~~~l~~~~~-~~-p~ivVl  224 (355)
T 3p32_A          156 VTRATRETVVLLEAAGFDVILIETVGVGQSEVA-------V--ANMVDTFVLLTLARTGDQLQGIKKGVL-EL-ADIVVV  224 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHH-------H--HTTCSEEEEEEESSTTCTTTTCCTTSG-GG-CSEEEE
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHHH-------H--HHhCCEEEEEECCCCCccHHHHHHhHh-hc-CCEEEE
Confidence             22334555666667899999999995432111       1  123588999999855432211111111 11 345899


Q ss_pred             ccCCCCCc
Q 015657          162 TKLDGDSR  169 (403)
Q Consensus       162 Nk~D~~~~  169 (403)
                      ||+|....
T Consensus       225 NK~Dl~~~  232 (355)
T 3p32_A          225 NKADGEHH  232 (355)
T ss_dssp             ECCCGGGH
T ss_pred             ECCCCcCh
Confidence            99997643

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=99.46  E-value=4.8e-13  Score=131.49  Aligned_cols=44  Identities=36%  Similarity=0.428  Sum_probs=40.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ...+++++++|+||+||||+|++||.+|++.|++|++||+|++.
T Consensus        13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~   56 (334)
T 3iqw_A           13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH   56 (334)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            44578888899999999999999999999999999999999755

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=99.44  E-value=8.5e-13  Score=122.89  Aligned_cols=172  Identities=19%  Similarity=0.246  Sum_probs=105.3

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEec---cCCC--hh--hHHHHHHhhh------ccCCceEeCCCC
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG---DVYR--PA--AIDQLVILGE------QVGVPVYTAGTE   79 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~---D~~r--p~--~~~~l~~~~~------~~gv~v~~~~~~   79 (403)
                      +.+.++|+|. +|+||||+++.|+++|+++|++|.+...   -+..  ..  ..+.+.....      ..+...+..  .
T Consensus         3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~--p   80 (228)
T 3of5_A            3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISFNQ--A   80 (228)
T ss_dssp             TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEESS--S
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEECC--C
Confidence            4578999999 9999999999999999999999998751   1111  10  0122111110      112112211  1


Q ss_pred             CCH------------HHHHHHHHHH-HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHH
Q 015657           80 VKP------------SQIAKQGLEE-AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA  144 (403)
Q Consensus        80 ~~~------------~~~~~~~l~~-~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~  144 (403)
                      ..|            .+.+.+.+.. + ..+||+||||+||++...........++...+. .++++|+++..+  .++.
T Consensus        81 ~sp~~aa~~~~~~i~~~~i~~~~~~~l-~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~-~pviLV~~~~~~~i~~~~  158 (228)
T 3of5_A           81 VAPHIIAAKTKVDISIENLKQFIEDKY-NQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQ-IPVLLVSAIKVGCINHTL  158 (228)
T ss_dssp             SCHHHHHHHTTCCCCHHHHHHHHHGGG-GSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHT-CCEEEEEECSTTHHHHHH
T ss_pred             CCHHHHHHHcCCCCCHHHHHHHHHHHH-HccCCEEEEECCCccccccccchhHHHHHHHcC-CCEEEEEcCCcchHHHHH
Confidence            111            2334555555 4 378999999999887531110011234444444 789999999533  3333


Q ss_pred             HHHHH-hhhcCCeeEEEEccCCCC-Cc-hhHHHHHHHHhCCCeEEeeccC
Q 015657          145 ALVTT-FNIEIGITGAILTKLDGD-SR-GGAALSVKEVSGKPIKLVGRGE  191 (403)
Q Consensus       145 ~~~~~-~~~~~~i~GvIlNk~D~~-~~-~~~~~~~~~~~g~pi~fig~ge  191 (403)
                      ..... ....+++.|+|+|+++.+ .+ ......+.+.+|.|+  +|..|
T Consensus       159 ~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pv--LG~iP  206 (228)
T 3of5_A          159 LTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKC--SAKIS  206 (228)
T ss_dssp             HHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCC--SEEEE
T ss_pred             HHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCE--EEECC
Confidence            33333 356788999999999876 33 344556667799999  88777

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=99.44  E-value=6.6e-13  Score=131.51  Aligned_cols=42  Identities=31%  Similarity=0.430  Sum_probs=37.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~   54 (403)
                      ...++++++|+||+||||+|++||..|+  +.|+||++||+|+.
T Consensus        16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~   59 (354)
T 2woj_A           16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA   59 (354)
T ss_dssp             SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence            3456777789999999999999999999  89999999999984

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.40  E-value=3.5e-12  Score=125.57  Aligned_cols=240  Identities=17%  Similarity=0.183  Sum_probs=119.1

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH----H---hhhccCCceEeCCCC-
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV----I---LGEQVGVPVYTAGTE-   79 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~----~---~~~~~gv~v~~~~~~-   79 (403)
                      +.+...+..+++++|++|+||||++.+|+..+...|.+|.+++.|++.+.....+.    .   +....+..+.+.... 
T Consensus        49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~  128 (341)
T 2p67_A           49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSG  128 (341)
T ss_dssp             HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC--
T ss_pred             CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCcccc
Confidence            34555677899999999999999999999999999999999999998764311110    0   000011111111111 


Q ss_pred             -C-CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCee
Q 015657           80 -V-KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGIT  157 (403)
Q Consensus        80 -~-~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~  157 (403)
                       . .......+.+..+.+.+|+++||||||.......       +  ...+|.+++|+|+..+.... ..+...... ..
T Consensus       129 ~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~-------~--~~~aD~vl~Vvd~~~~~~~~-~l~~~~~~~-p~  197 (341)
T 2p67_A          129 HLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE-------V--ARMVDCFISLQIAGGGDDLQ-GIKKGLMEV-AD  197 (341)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH-------H--HTTCSEEEEEECC------C-CCCHHHHHH-CS
T ss_pred             ccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH-------H--HHhCCEEEEEEeCCccHHHH-HHHHhhhcc-cC
Confidence             0 1112223334444457899999999997643211       1  13458899999986543211 010000111 23


Q ss_pred             EEEEccCCCCCchhHH---HHHHH---HhC-------CCeEEee--ccCCcCCCCCCCchhhhhhhcCCccHH-HHHHHH
Q 015657          158 GAILTKLDGDSRGGAA---LSVKE---VSG-------KPIKLVG--RGERMEDLEPFYPDRMAGRILGMGDVL-SFVEKA  221 (403)
Q Consensus       158 GvIlNk~D~~~~~~~~---~~~~~---~~g-------~pi~fig--~ge~v~~l~~f~~~~~~~r~lG~~dv~-~l~e~~  221 (403)
                      .+|+||+|........   ..+.+   ..+       .|+.+++  .++.++++...-.+......-+ +.+. ...+.+
T Consensus       198 ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~-~~~~~~r~~~~  276 (341)
T 2p67_A          198 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS-GRLQQVRQQQS  276 (341)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHHHH
Confidence            5899999976432211   12222   122       3444444  4444444221111111000001 1111 111111


Q ss_pred             HHHhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 015657          222 QEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSM  260 (403)
Q Consensus       222 ~e~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~~  260 (403)
                      .+.+.+.-.+.+.+++.++ ++.++++..++.....|.+
T Consensus       277 ~~~~~e~i~e~l~~~~~~~-~~~~~~~~~l~~~v~~~~~  314 (341)
T 2p67_A          277 VEWLRKQTEEEVLNHLFAN-EDFDRYYRQTLLAVKNNTL  314 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhC-cchhHHHHHHHHHHHhCCC
Confidence            1222222234455555553 8888888888887777764

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.36  E-value=2.1e-12  Score=135.94  Aligned_cols=49  Identities=35%  Similarity=0.516  Sum_probs=43.2

Q ss_pred             cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657            9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus         9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      .|....+++++++|+||+||||+|++||.+++++|+||++||+|+. +..
T Consensus         2 ~~~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l   50 (589)
T 1ihu_A            2 QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNV   50 (589)
T ss_dssp             GGGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCH
T ss_pred             CCCCCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCH
Confidence            3555677899999999999999999999999999999999999984 444

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=99.35  E-value=9.1e-12  Score=124.01  Aligned_cols=148  Identities=19%  Similarity=0.185  Sum_probs=88.9

Q ss_pred             ccccCCCCEEEEEEc-CCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-----------hhHHHHHH-----------
Q 015657            8 LVFAKSRPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----------AAIDQLVI-----------   64 (403)
Q Consensus         8 l~~~~~~~~iI~v~G-~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-----------~~~~~l~~-----------   64 (403)
                      +.....++++|+|++ +||+||||+|.+||.+|+++|++|++||+|.+..           ...+.+..           
T Consensus       136 ~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~  215 (373)
T 3fkq_A          136 ISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLK  215 (373)
T ss_dssp             CCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHH
T ss_pred             ccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhccccccccc
Confidence            334556788898885 6999999999999999999999999999993321           11111111           


Q ss_pred             hh-----hccCCceEeCCCCCC-----HHHHHHHHHHHHH-hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEE
Q 015657           65 LG-----EQVGVPVYTAGTEVK-----PSQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL  133 (403)
Q Consensus        65 ~~-----~~~gv~v~~~~~~~~-----~~~~~~~~l~~~~-~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vll  133 (403)
                      +.     ...|+.+++.+....     ....+...++.+. +..||+||||||++...+.      ..+  ...+|.+++
T Consensus       216 l~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~------~~~--l~~aD~viv  287 (373)
T 3fkq_A          216 LESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEK------LKL--LSKAWRIIV  287 (373)
T ss_dssp             HHHTCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHH------HHH--HTTCSEEEE
T ss_pred             HHHHhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH------HHH--HHHCCEEEE
Confidence            00     124566665443211     1233444455543 3689999999998775311      111  123488888


Q ss_pred             EEeccc-----HHHHHHHHHHhhhcCCeeEEEEccC
Q 015657          134 VVDAMT-----GQEAAALVTTFNIEIGITGAILTKL  164 (403)
Q Consensus       134 Vvda~~-----g~~~~~~~~~~~~~~~i~GvIlNk~  164 (403)
                      |+.+..     ..++.+.++.+..... .++|.|+.
T Consensus       288 v~~~~~~s~~~l~~~~~~l~~l~~~~~-~~vv~N~~  322 (373)
T 3fkq_A          288 VNDGSQLSNYKFMRAYESVVLLEQNDD-INIIRNMN  322 (373)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHHTTSTT-CCCGGGEE
T ss_pred             EecCCchHHHHHHHHHHHHHHhcccCC-cEEEehhH
Confidence            888732     2455555555544333 33444443

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=99.35  E-value=3e-12  Score=126.46  Aligned_cols=44  Identities=30%  Similarity=0.406  Sum_probs=39.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~r   55 (403)
                      ..+.++++++|+||+||||+|++||.+++  +.|++|++||+|++.
T Consensus        15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~   60 (348)
T 3io3_A           15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH   60 (348)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence            44568999999999999999999999999  899999999999653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.34  E-value=1.1e-12  Score=123.19  Aligned_cols=153  Identities=16%  Similarity=0.146  Sum_probs=83.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-------------HHHHHHhhhccCCceEeC-C
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILGEQVGVPVYTA-G   77 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-------------~~~l~~~~~~~gv~v~~~-~   77 (403)
                      ..++.+++++|++||||||++.+|+.+++ .|++|++||+|++....             .+.........+..+++. .
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD   89 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence            34568888899999999999999999999 99999999999875432             111100000000000000 0


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHH----H-H
Q 015657           78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALV----T-T  149 (403)
Q Consensus        78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~----~-~  149 (403)
                      ........+.+.++.+. .+||++||||||....... ......+...+..+-+++|+|+...   .+.....    . .
T Consensus        90 ~~~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~  167 (262)
T 1yrb_A           90 RLMEKFNEYLNKILRLE-KENDYVLIDTPGQMETFLF-HEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID  167 (262)
T ss_dssp             HHHTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHH-SHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhh-hhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence            00011233445555554 4699999999998643110 0000111122222566788887432   2222111    1 1


Q ss_pred             hhhcCCeeEEEEccCCCCC
Q 015657          150 FNIEIGITGAILTKLDGDS  168 (403)
Q Consensus       150 ~~~~~~i~GvIlNk~D~~~  168 (403)
                      .....++ .+|+||+|...
T Consensus       168 ~~~~~p~-~iv~NK~D~~~  185 (262)
T 1yrb_A          168 LRLGATT-IPALNKVDLLS  185 (262)
T ss_dssp             HHHTSCE-EEEECCGGGCC
T ss_pred             cccCCCe-EEEEecccccc
Confidence            1223443 48999999654

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=99.29  E-value=5e-11  Score=111.84  Aligned_cols=151  Identities=17%  Similarity=0.192  Sum_probs=92.5

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEe-----ccCC---ChhhHHHH-HHhhhcc-CCc-----eEeCC
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVY---RPAAIDQL-VILGEQV-GVP-----VYTAG   77 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd-----~D~~---rp~~~~~l-~~~~~~~-gv~-----v~~~~   77 (403)
                      ..+.++|+|. +|+|||++++.|+++|+++|++|.++.     ++..   ..+. ..+ ....... +++     .+...
T Consensus        20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~-~~~~~~~~~~~~g~~~~~~~p~~~~   98 (242)
T 3qxc_A           20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDA-HLFLQDNRLLDRSLTLKDISFYRYH   98 (242)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHH-HHHHHHHHTTCTTCCHHHHCCEECS
T ss_pred             cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchH-HHHHHHHHHHhCCCChHHeeeEEEC
Confidence            4588999999 999999999999999999999999886     2211   1111 111 0001111 222     11111


Q ss_pred             CCC--------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--H
Q 015657           78 TEV--------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q  141 (403)
Q Consensus        78 ~~~--------------~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~  141 (403)
                      ...              ...+.+.+.+..+ ...||+||||++|++...-.-.....++.+.+. .++++|+++..+  .
T Consensus        99 ~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~-~pVILV~~~~lg~i~  176 (242)
T 3qxc_A           99 KVSAPLIAQQEEDPNAPIDTDNLTQRLHNF-TKTYDLVIVEGAGGLCVPITLEENMLDFALKLK-AKMLLISHDNLGLIN  176 (242)
T ss_dssp             SSSCHHHHHHHHCTTCCCCHHHHHHHHHHG-GGTCSEEEEECCSCTTCBSSSSCBHHHHHHHHT-CEEEEEECCSTTHHH
T ss_pred             CCCChHHHHHHcCCCCcCCHHHHHHHHHHH-HhcCCEEEEECCCCccccccccchHHHHHHHcC-CCEEEEEcCCCcHHH
Confidence            111              1233455666665 378999999999988642100011234445554 789999999544  2


Q ss_pred             HHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657          142 EAAALVTTF-NIEIGITGAILTKLDGDS  168 (403)
Q Consensus       142 ~~~~~~~~~-~~~~~i~GvIlNk~D~~~  168 (403)
                      ++...+..+ ...+. .|+|+|+++.+.
T Consensus       177 ~~~lt~~~l~~~g~~-~GvIlN~v~~~~  203 (242)
T 3qxc_A          177 DCLLNDFLLKSHQLD-YKIAINLKGNNT  203 (242)
T ss_dssp             HHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred             HHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence            333333333 45778 999999998765

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=99.24  E-value=8.4e-11  Score=117.04  Aligned_cols=40  Identities=25%  Similarity=0.380  Sum_probs=36.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      +++++++|+||+||||+|++||.+++++|++|++||+ ++.
T Consensus         2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~   41 (374)
T 3igf_A            2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEP   41 (374)
T ss_dssp             CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCS
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCC
Confidence            4788899999999999999999999999999999999 653

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.16  E-value=6.3e-11  Score=124.70  Aligned_cols=44  Identities=34%  Similarity=0.416  Sum_probs=38.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      .+..+++++|++|+||||+|++||..|+++|++|+++|+|++.+
T Consensus       325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~  368 (589)
T 1ihu_A          325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH  368 (589)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC--
T ss_pred             cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCccc
Confidence            34567777899999999999999999999999999999998743

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.03  E-value=2.4e-09  Score=105.65  Aligned_cols=144  Identities=19%  Similarity=0.218  Sum_probs=75.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-------HHHhhhccCCceEeCCC--CCC-HH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-------LVILGEQVGVPVYTAGT--EVK-PS   83 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-------l~~~~~~~gv~v~~~~~--~~~-~~   83 (403)
                      ...+|+++|.+||||||+...|+..+...+.+|.++..|++.+.....       +..++......+.....  ... ..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            367899999999999999999999999889999999999887542111       11111111111111110  000 00


Q ss_pred             HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEcc
Q 015657           84 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK  163 (403)
Q Consensus        84 ~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk  163 (403)
                      ....+++..+...++|++||||||....+..       +.  -..+.+++|+|+..+........... .. ..-+|+||
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~~~-------l~--~~~d~vl~V~d~~~~~~~~~i~~~il-~~-~~ivVlNK  221 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQSEFA-------VA--DMVDMFVLLLPPAGGDELQGIKRGII-EM-ADLVAVTK  221 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--CHHH-------HH--TTCSEEEEEECCC------------C-CS-CSEEEECC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchhhhh-------HH--hhCCEEEEEEcCCcchhHHHhHHHHH-hc-CCEEEEee
Confidence            1112233333347899999999996432211       11  13478899999865532211111111 11 23588899


Q ss_pred             CCCCC
Q 015657          164 LDGDS  168 (403)
Q Consensus       164 ~D~~~  168 (403)
                      +|...
T Consensus       222 ~Dl~~  226 (349)
T 2www_A          222 SDGDL  226 (349)
T ss_dssp             CSGGG
T ss_pred             ecCCC
Confidence            99754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.93  E-value=4.4e-09  Score=95.70  Aligned_cols=136  Identities=16%  Similarity=0.222  Sum_probs=81.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC---CCCHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQIAKQG   89 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~---~~~~~~~~~~~   89 (403)
                      .+..+++++|.+||||||++.+|+..+... ++|.+++.|+..+.....+.    ..+..+...+.   .........+.
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  102 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVR----RFGIKAEAISTGKECHLDAHMIYHR  102 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHH----TTTCEEEECCCTTCSSCCHHHHHTT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHH----hCCCcEEEecCCceeecccHHHHHH
Confidence            356789999999999999999999988655 88999999987643222221    22444333222   11112223333


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH-HHHhhhcCCeeEEEEccCCCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-VTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~-~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      +.  ...++|++||||+|.+.....       +  ...++.+++|+|+..+...... ...+  . ....+|+||+|..
T Consensus       103 ~~--~~~~~d~iiidt~G~~~~~~~-------~--~~~~~~~i~vvd~~~~~~~~~~~~~~~--~-~~~iiv~NK~Dl~  167 (221)
T 2wsm_A          103 LK--KFSDCDLLLIENVGNLICPVD-------F--DLGENYRVVMVSVTEGDDVVEKHPEIF--R-VADLIVINKVALA  167 (221)
T ss_dssp             GG--GGTTCSEEEEEEEEBSSGGGG-------C--CCSCSEEEEEEEGGGCTTHHHHCHHHH--H-TCSEEEEECGGGH
T ss_pred             HH--hcCCCCEEEEeCCCCCCCCch-------h--ccccCcEEEEEeCCCcchhhhhhhhhh--h-cCCEEEEecccCC
Confidence            33  346899999999995321110       0  1234778999998654321111 1111  1 2345899999963

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.92  E-value=9.6e-09  Score=112.15  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=58.8

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHH-hhhcCCeeEEEEccCCCCCchhHH
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTT-FNIEIGITGAILTKLDGDSRGGAA  173 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~-~~~~~~i~GvIlNk~D~~~~~~~~  173 (403)
                      .+|++||+++|++......-....++.+.++ .+|+||+|+..+-  .+.-.... ....+.+.|||+|+.+.... ..+
T Consensus       201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~-~~l  278 (831)
T 4a0g_A          201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNE-VPL  278 (831)
T ss_dssp             -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTH-HHH
T ss_pred             cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHH-HHH
Confidence            7999999999987642111112256666666 7899999995442  22222222 24578899999998874322 222


Q ss_pred             HHHHHHhCCCeEEeeccCCcCC
Q 015657          174 LSVKEVSGKPIKLVGRGERMED  195 (403)
Q Consensus       174 ~~~~~~~g~pi~fig~ge~v~~  195 (403)
                      ....+ .+.|+..+|..+..+.
T Consensus       279 ~~~l~-~~~~v~vLg~lP~~~~  299 (831)
T 4a0g_A          279 TSYLR-NKVPVLVLPPVPKDPS  299 (831)
T ss_dssp             HHHTT-TSSCEEEECCCCCCTT
T ss_pred             HHHHH-hCCCceeeCCCCCCCH
Confidence            22221 1678877998887654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.90  E-value=1.3e-08  Score=99.83  Aligned_cols=149  Identities=17%  Similarity=0.188  Sum_probs=84.1

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-------HHHHHHhhhccCCceEeCCCCC
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGEQVGVPVYTAGTEV   80 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-------~~~l~~~~~~~gv~v~~~~~~~   80 (403)
                      +.+.-.+..+++++|++||||||+...|+..+...+.+|.++..|+.....       ...+.......+..+.......
T Consensus        48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~  127 (337)
T 2qm8_A           48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSG  127 (337)
T ss_dssp             HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCS
T ss_pred             CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccc
Confidence            445556778999999999999999999999998888899999999754321       0000011111111111111111


Q ss_pred             C---HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCee
Q 015657           81 K---PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGIT  157 (403)
Q Consensus        81 ~---~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~  157 (403)
                      .   ......+.+..+...++|++||||||.......+       .  -..+-+++|+|+..+.+.........+ . ..
T Consensus       128 ~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-------~--~~~d~vl~v~d~~~~~~~~~i~~~i~~-~-~~  196 (337)
T 2qm8_A          128 TLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV-------A--DLTDFFLVLMLPGAGDELQGIKKGIFE-L-AD  196 (337)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-------H--TTSSEEEEEECSCC------CCTTHHH-H-CS
T ss_pred             cccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-------H--hhCCEEEEEEcCCCcccHHHHHHHHhc-c-cc
Confidence            1   1222333343444579999999999986432211       1  134778888887544321111000111 1 23


Q ss_pred             EEEEccCCCC
Q 015657          158 GAILTKLDGD  167 (403)
Q Consensus       158 GvIlNk~D~~  167 (403)
                      -+++||+|..
T Consensus       197 ivvlNK~Dl~  206 (337)
T 2qm8_A          197 MIAVNKADDG  206 (337)
T ss_dssp             EEEEECCSTT
T ss_pred             EEEEEchhcc
Confidence            4778999953

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.85  E-value=3.7e-08  Score=105.76  Aligned_cols=223  Identities=17%  Similarity=0.145  Sum_probs=111.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHH---HhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYL---KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L---~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      .+.+.|+|+|++|+||||++..|....   .+.| +|     |... ...+.. ......++.+...........     
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g-~v-----~~g~-~~~D~~-~~E~~rgiTi~~~~~~~~~~~-----   74 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG-EV-----HDGA-ATMDWM-EQEQERGITITSAATTAFWSG-----   74 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc-cc-----CCCc-eeecCh-hhHHhcCceeeeceEEEEECC-----
Confidence            356789999999999999999997542   1222 11     1110 000110 011112222211100000000     


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHh-hhcCCeeEEEEccCCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTF-NIEIGITGAILTKLDG  166 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~-~~~~~i~GvIlNk~D~  166 (403)
                      . ......+++.||||||...+.......    ..  .+|.+++|+|+..+.  ......... ...++ .-+|+||+|.
T Consensus        75 ~-~~~~~~~~i~liDTPG~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~  146 (704)
T 2rdo_7           75 M-AKQYEPHRINIIDTPGHVDFTIEVERS----MR--VLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDR  146 (704)
T ss_pred             c-cccCCceeEEEEeCCCccchHHHHHHH----HH--HCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCc
Confidence            0 011245899999999986543322222    22  248999999996542  112222211 22333 3488999996


Q ss_pred             CC--chhHHHHHHHHhCCCeE----EeeccCCcCCCCCCCchhhhhhhc-----C------------CccHHHHHHHHHH
Q 015657          167 DS--RGGAALSVKEVSGKPIK----LVGRGERMEDLEPFYPDRMAGRIL-----G------------MGDVLSFVEKAQE  223 (403)
Q Consensus       167 ~~--~~~~~~~~~~~~g~pi~----fig~ge~v~~l~~f~~~~~~~r~l-----G------------~~dv~~l~e~~~e  223 (403)
                      ..  .......+.+.++.++.    +++.+..+..+.  +...+..+.+     |            ...+.++++.+.|
T Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~--dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e  224 (704)
T 2rdo_7          147 MGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVV--DLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIE  224 (704)
T ss_pred             ccccHHHHHHHHHHHhCCCceeEEcccccccccccee--ehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHH
Confidence            53  23445566666665432    222222221100  0000000000     0            0122344555666


Q ss_pred             HhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657          224 VMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG  258 (403)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g  258 (403)
                      .+.+.+++.+.+++...+++.+++...++.....|
T Consensus       225 ~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~  259 (704)
T 2rdo_7          225 SAAEASEELMEKYLGGEELTEAEIKGALRQRVLNN  259 (704)
T ss_pred             HHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence            66666666666777777899999999998888765

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=98.78  E-value=9.8e-09  Score=94.94  Aligned_cols=87  Identities=22%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCC----CCCHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT----EVKPSQIAKQGLE   91 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~----~~~~~~~~~~~l~   91 (403)
                      -.|++.|+||+||||++.++|..++++|++|++++.|++.......+..........++....    ......+    + 
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~----L-   81 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDAL----L-   81 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHH----H-
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHH----H-
Confidence            457888999999999999999999999999999999998766544432211111111111110    1111111    1 


Q ss_pred             HHHhCCCcEEEEeCCCCcc
Q 015657           92 EAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~  110 (403)
                         ...+|++|||++|..+
T Consensus        82 ---~~~pdlvIVDElG~~~   97 (228)
T 2r8r_A           82 ---KAAPSLVLVDELAHTN   97 (228)
T ss_dssp             ---HHCCSEEEESCTTCBC
T ss_pred             ---hcCCCEEEEeCCCCCC
Confidence               1369999999999754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.78  E-value=2.3e-07  Score=99.40  Aligned_cols=216  Identities=15%  Similarity=0.166  Sum_probs=113.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+.+.|+++|.+|+||||++..|........... -++  .. ....+.. ......++.+.....             
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g-~v~--~~-~~~~D~~-~~e~~~giTi~~~~~-------------   68 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIG-ETH--EG-ASQMDWM-EQEQDRGITITSAAT-------------   68 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC------------------------------CCSEE-------------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccc--CC-ceecccc-hhhhhcCceEeeeeE-------------
Confidence            34568899999999999999999875432211100 011  00 0000100 000111111110000             


Q ss_pred             HHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           92 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.++.+.||||||...+.......+.      .+|.+++|+|+..+  ........... ...+ .-+|+||+|...
T Consensus        69 ~~~~~~~~i~liDTPG~~df~~~~~~~l~------~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~  141 (693)
T 2xex_A           69 TAAWEGHRVNIIDTPGHVDFTVEVERSLR------VLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLG  141 (693)
T ss_dssp             EEEETTEEEEEECCCCCSSCCHHHHHHHH------HCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTT
T ss_pred             EEEECCeeEEEEECcCCcchHHHHHHHHH------HCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccc
Confidence            00124789999999998765444333222      24899999999543  12222222222 2233 448999999754


Q ss_pred             c--hhHHHHHHHHhCCCeE----EeeccCCcCCCCCCC--------------------chhhhhhhcCCccHHHHHHHHH
Q 015657          169 R--GGAALSVKEVSGKPIK----LVGRGERMEDLEPFY--------------------PDRMAGRILGMGDVLSFVEKAQ  222 (403)
Q Consensus       169 ~--~~~~~~~~~~~g~pi~----fig~ge~v~~l~~f~--------------------~~~~~~r~lG~~dv~~l~e~~~  222 (403)
                      .  ...+..+.+.++.+..    .++.++.++.+....                    |.++.+      .+..+++++.
T Consensus       142 ~~~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~e~~r~~l~  215 (693)
T 2xex_A          142 ANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLD------RAEEARASLI  215 (693)
T ss_dssp             CCHHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHH------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHH------HHHHHHHHHH
Confidence            3  2345566666775432    333333333211110                    111111      1345566777


Q ss_pred             HHhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657          223 EVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG  258 (403)
Q Consensus       223 e~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g  258 (403)
                      +.+.+++++.+.+++...+++.+++...++.....|
T Consensus       216 e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~  251 (693)
T 2xex_A          216 EAVAETSDELMEKYLGDEEISVSELKEAIRQATTNV  251 (693)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence            777777776677777777899999999998888766

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.73  E-value=1.7e-07  Score=100.67  Aligned_cols=225  Identities=17%  Similarity=0.157  Sum_probs=114.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      +.|.|+|+|+.++||||++-.|.++-.   +.| +|-  +.+    ...|.. ......|+.+........-    +  -
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g-~v~--~~~----~~~D~~-~~E~eRGITI~s~~~s~~~----~--~   77 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG-EVH--DGA----ATTDWM-VQEQERGITITSAAVTTFW----K--G   77 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEE----C--C
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc-eec--CCC----ccCCCh-HHHHHcCCeEEeeeEEEEe----c--c
Confidence            358999999999999999999987653   223 110  100    111111 1222334433221100000    0  0


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      ...+.++|-+.||||||...+..++...|.    +  +|.+++|||+..|   |+-.-.-.....++++ -+++||+|..
T Consensus        78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr----~--~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiDr~  150 (709)
T 4fn5_A           78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLR----V--LDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMDRQ  150 (709)
T ss_dssp             TTSCSCCEEEEEECCCSCTTCHHHHHHHHH----H--CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSSST
T ss_pred             CcCCCCCEEEEEEeCCCCcccHHHHHHHHH----H--hCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEcccccc
Confidence            000013688999999999877555554443    3  2899999999655   2221111223445554 4899999965


Q ss_pred             C--chhHHHHHHHHhCCCeE----EeeccCCcCCC---CCCCchhhhhhhcCC--------c----cHHHHHHHHHHHhh
Q 015657          168 S--RGGAALSVKEVSGKPIK----LVGRGERMEDL---EPFYPDRMAGRILGM--------G----DVLSFVEKAQEVMQ  226 (403)
Q Consensus       168 ~--~~~~~~~~~~~~g~pi~----fig~ge~v~~l---~~f~~~~~~~r~lG~--------~----dv~~l~e~~~e~~~  226 (403)
                      .  ......++...++..+.    .++.++....+   ..+....|.+-..|.        .    ....+.+.+.+.+.
T Consensus       151 ~a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~  230 (709)
T 4fn5_A          151 GANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAA  230 (709)
T ss_dssp             TCCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHH
Confidence            3  33556677777776443    33433332110   000000000000000        0    11233444445555


Q ss_pred             HhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015657          227 QEDAEEMQKKIMSANFDFNDFLKQTRTVARMGS  259 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~  259 (403)
                      +.+...+.+++..++++.+++...++.....+.
T Consensus       231 ~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  263 (709)
T 4fn5_A          231 EANEELMNKYLEEGELSEAEIKEGLRLRTLACE  263 (709)
T ss_dssp             TSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTS
T ss_pred             hccHHHHHHHHhcCCccHHHHHHHHHHhhhhce
Confidence            556666777788889999999998887765553

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.71  E-value=1.9e-07  Score=99.94  Aligned_cols=215  Identities=19%  Similarity=0.185  Sum_probs=111.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+.+.|+++|..|+||||++..|........... -++  .. ....+.. ......++.+.....             .
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g-~v~--~~-~~~~d~~-~~E~~~giTi~~~~~-------------~   71 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG-EVH--EG-AATMDFM-EQERERGITITAAVT-------------T   71 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC---------------------------------CCEE-------------E
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccc-eec--CC-ceeccCc-hhhhhcccccccceE-------------E
Confidence            3467899999999999999999975432110000 111  00 0011111 001111111110000             0


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCCc
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~~  169 (403)
                      +.+.++.+.||||||...+.......+    .  .+|.+++|+|+..+  .......... ...++ .-+|+||+|....
T Consensus        72 ~~~~~~~i~liDTPG~~df~~~~~~~l----~--~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~  144 (691)
T 1dar_A           72 CFWKDHRINIIDTPGHVDFTIEVERSM----R--VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGA  144 (691)
T ss_dssp             EEETTEEEEEECCCSSTTCHHHHHHHH----H--HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC
T ss_pred             EEECCeEEEEEECcCccchHHHHHHHH----H--HCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccC
Confidence            012478999999999865433222222    2  24899999999543  1222222222 22333 3488999997533


Q ss_pred             --hhHHHHHHHHhCCCeE----EeeccCCcCCCCC--------CC------------chhhhhhhcCCccHHHHHHHHHH
Q 015657          170 --GGAALSVKEVSGKPIK----LVGRGERMEDLEP--------FY------------PDRMAGRILGMGDVLSFVEKAQE  223 (403)
Q Consensus       170 --~~~~~~~~~~~g~pi~----fig~ge~v~~l~~--------f~------------~~~~~~r~lG~~dv~~l~e~~~e  223 (403)
                        ......+.+.++.+..    +++.+..+..+..        |.            |..+.+      .+..+++++.+
T Consensus       145 ~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~r~~l~e  218 (691)
T 1dar_A          145 DLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLD------QAREYHEKLVE  218 (691)
T ss_dssp             CHHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHH------HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHH------HHHHHHHHHHH
Confidence              2344556666665432    3333333222110        00            111111      13456677777


Q ss_pred             HhhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657          224 VMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG  258 (403)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g  258 (403)
                      .+.+.+++.+.+++...+++.+++...++.....|
T Consensus       219 ~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~  253 (691)
T 1dar_A          219 VAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDL  253 (691)
T ss_dssp             HHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred             HHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence            77777777777777777899999999998888765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.69  E-value=1.1e-08  Score=106.85  Aligned_cols=150  Identities=19%  Similarity=0.206  Sum_probs=82.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      .+.|.|+|+|+.++||||++-.|.++-.   +.| .|  =+.+..+....|.. ......|+.+.....           
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G-~V--~~~~~~~~~~~D~~-~~EreRGITI~s~~~-----------   93 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAG-SV--KARKAARHATSDWM-AMERERGISVTTSVM-----------   93 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHH-HH--HHC---------------------CTTTEE-----------
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccc-ee--ecCccccccccCCh-HHHHHCCCcEeeceE-----------
Confidence            3579999999999999999999986532   111 00  00000000011111 122333444322211           


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCe-eEEEEccCCCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD  167 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlNk~D~~  167 (403)
                        .+.+++|.+.||||||...+..++...|..      .|.+++|+|+..| +.....++......++ .-+++||+|..
T Consensus        94 --~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~------~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A           94 --QFPYRDRVVNLLDTPGHQDFSEDTYRVLTA------VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE  165 (548)
T ss_dssp             --EEEETTEEEEEECCCCGGGCSHHHHHHHHS------CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred             --EEEECCEEEEEEeCCCcHHHHHHHHHHHHh------cCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence              112578999999999998776666555433      3899999999655 2222333333222222 34799999965


Q ss_pred             --CchhHHHHHHHHhCCCeE
Q 015657          168 --SRGGAALSVKEVSGKPIK  185 (403)
Q Consensus       168 --~~~~~~~~~~~~~g~pi~  185 (403)
                        .....+.++.+.++..+.
T Consensus       166 ~ad~~~~~~~i~~~l~~~~~  185 (548)
T 3vqt_A          166 ALHPLDVMADIEQHLQIECA  185 (548)
T ss_dssp             CCCHHHHHHHHHHHHTSEEE
T ss_pred             hcchhHhhhhhhhhcCCceE
Confidence              334566778888887543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.66  E-value=6.3e-08  Score=102.82  Aligned_cols=202  Identities=17%  Similarity=0.167  Sum_probs=109.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCC--cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~--kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .|-|+|+|+.++||||++-.|.++-..-..  +|  -+.+    ...|.. ......|+.+.......            
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v--~~g~----~~~D~~-~~EreRGITI~s~~~~~------------   62 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSV--DKGT----TRTDNT-LLERQRGITIQTGITSF------------   62 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSC--CCSC----CSTTCS-TTHHHHSSCSSCCCCCC------------
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCcccccc--ccCC----cccCCc-HHHHhCCCcEEeeeEEE------------
Confidence            466899999999999999999876653111  11  0111    011111 11223355444332221            


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC--
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD--  167 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~--  167 (403)
                       .+++|.+.||||||...+..++...|    ++  .|.+++|||+..|   |+-...-......+++ -+++||+|..  
T Consensus        63 -~~~~~~iNlIDTPGH~DF~~Ev~raL----~~--~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a  134 (638)
T 3j25_A           63 -QWENTKVNIIDTPGHMDFLAEVYRSL----SV--LDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNGI  134 (638)
T ss_dssp             -BCSSCBCCCEECCCSSSTHHHHHHHH----TT--CSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSSC
T ss_pred             -EECCEEEEEEECCCcHHHHHHHHHHH----HH--hCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccccccC
Confidence             25789999999999887655544443    22  3899999999655   2211111122334444 4889999965  


Q ss_pred             CchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCccHHHHHHHHHHHhhHhHHHHHHHHHhcCCCCHHHH
Q 015657          168 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF  247 (403)
Q Consensus       168 ~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~dv~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~edl  247 (403)
                      .......++.+.++.++.+....+...+...          ....+ ....+.+.    +.+++.+..++....++..++
T Consensus       135 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~e~~~----e~~d~l~e~~~~~~~~~~~~~  199 (638)
T 3j25_A          135 DLSTVYQDIKEKLSAEIVIKQKVELYPNVCV----------TNFTE-SEQWDTVI----EGNDDLLEKYMSGKSLEALEL  199 (638)
T ss_dssp             CSHHHHHHHHHTTCCCCCCCCCCCSCGGGCC----------CCCCC-HHHHHHHH----HHHCHHHHHHHHHCCCCSHHH
T ss_pred             CHHHHHHHHHHHhCCCccccceeEeeccccc----------cccch-hhhhhhhh----cccHHHHhhhccCCccchHHH
Confidence            3445567777778776533222211111000          00111 12222222    233344555566667888887


Q ss_pred             HHHHHHHHhcC
Q 015657          248 LKQTRTVARMG  258 (403)
Q Consensus       248 ~~ql~~~~k~g  258 (403)
                      ...+......+
T Consensus       200 ~~~~~~~~~~~  210 (638)
T 3j25_A          200 EQEESIRFQNC  210 (638)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHhhhhccc
Confidence            77766655444

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.57  E-value=1.5e-06  Score=85.18  Aligned_cols=157  Identities=21%  Similarity=0.208  Sum_probs=103.7

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCce--EeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV--YTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v--~~~~~~~~~~~~~~~~l   90 (403)
                      +.+.++++|. ..+||||++..|...+.++|+++..+..-     ..-.+ .  ...+++.  ...+.   ....+...+
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg-----qtg~~-~--~~~gi~~Dav~~df---~aG~ve~~~  219 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG-----QTGVM-L--EGDGVALDAVRVDF---AAGAVEQMV  219 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS-----HHHHH-H--HSCSCCGGGSBHHH---HHHHHHHHH
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc-----chhhh-h--hcCCcchhHHHHHH---HhhhHHHHH
Confidence            3678899999 99999999999999999999999876532     11111 1  1222221  11100   011223333


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cH-----------HHHHHHHHHh----h--
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TG-----------QEAAALVTTF----N--  151 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g-----------~~~~~~~~~~----~--  151 (403)
                      ..+ .++||++||++.|++.....  .....+.....|+.+++|.++.  ..           .+....+..+    +  
T Consensus       220 ~~~-~~~~d~vlVEGqGgl~~P~~--~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~  296 (349)
T 2obn_A          220 MRY-GKNYDILHIEGQGSLLHPGS--TATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAF  296 (349)
T ss_dssp             HHH-TTTCSEEEECCCCCTTSTTC--CTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTS
T ss_pred             HHh-ccCCCEEEEeCCCcccCcCh--HhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccC
Confidence            344 35899999999999875431  1224777788889999999972  22           4444444443    2  


Q ss_pred             hcCCeeEEEEccCCCCC--chhHHHHHHHHhCCCe
Q 015657          152 IEIGITGAILTKLDGDS--RGGAALSVKEVSGKPI  184 (403)
Q Consensus       152 ~~~~i~GvIlNk~D~~~--~~~~~~~~~~~~g~pi  184 (403)
                      ...++.|+++|..+.+.  ....+..+.+.+|+|+
T Consensus       297 ~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv  331 (349)
T 2obn_A          297 GTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPC  331 (349)
T ss_dssp             CCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCE
T ss_pred             CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
Confidence            56889999999987552  3356677888999999

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.42  E-value=2.9e-07  Score=95.61  Aligned_cols=151  Identities=17%  Similarity=0.182  Sum_probs=73.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +.+.|+++|.+|+||||++.+|............+.+.+.++....+... .....|+.+.....             .+
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~-~E~~rGiTi~~~~~-------------~~   77 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWME-MEKQRGISITTSVM-------------QF   77 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTEE-------------EE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccch-hcccCCcceeeeEE-------------EE
Confidence            46789999999999999999887532221222223333333332222211 11122222110000             01


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCCch
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~~  170 (403)
                      ...++.+.||||||...+.......      ...++.+++|+|+..+  ........... ..++ .-+++||+|.....
T Consensus        78 ~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~  150 (529)
T 2h5e_A           78 PYHDCLVNLLDTPGHEDFSEDTYRT------LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRD  150 (529)
T ss_dssp             EETTEEEEEECCCCSTTCCHHHHHG------GGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSC
T ss_pred             EECCeEEEEEECCCChhHHHHHHHH------HHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCcccc
Confidence            1257899999999986543322221      2245899999999543  22222222222 2333 45899999975432


Q ss_pred             --hHHHHHHHHhCCCeE
Q 015657          171 --GAALSVKEVSGKPIK  185 (403)
Q Consensus       171 --~~~~~~~~~~g~pi~  185 (403)
                        .....+.+.++.++.
T Consensus       151 ~~~~~~~i~~~l~~~~~  167 (529)
T 2h5e_A          151 PMELLDEVENELKIGCA  167 (529)
T ss_dssp             HHHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHHHHHhCCCcc
Confidence              345667777777543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.42  E-value=7.5e-07  Score=81.05  Aligned_cols=137  Identities=19%  Similarity=0.299  Sum_probs=77.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC--C--CCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG--T--EVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~--~--~~~~~~~~~~   88 (403)
                      .++..|+++|.+||||||++.+|+..+... +++.+++.|+..+...+.+    ...+..++..+  .  ...... ..+
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~----~~~~~~~~~~~~~~~~~l~~~~-~~~  109 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERM----EKHGAKVVPLNTGKECHLDAHL-VGH  109 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHH----HTTTCEEEEEECTTCSSCCHHH-HHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHH----HhcCCcEEEecCCceEeccHHH-HHH
Confidence            356778899999999999999999887655 7899999998754222222    12233333221  1  122222 233


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH-HHHHHhhhcCCeeEEEEccCCCC
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~-~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .+..+...++|++++||+|.+.....       + . ......+.|+|+..+.... .....+.   ....+|+||+|..
T Consensus       110 ~~~~l~~~~~d~~~id~~g~i~~~~s-------~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~  177 (226)
T 2hf9_A          110 ALEDLNLDEIDLLFIENVGNLICPAD-------F-D-LGTHKRIVVISTTEGDDTIEKHPGIMK---TADLIVINKIDLA  177 (226)
T ss_dssp             HHTTSCGGGCSEEEEECCSCSSGGGG-------C-C-CSCSEEEEEEEGGGCTTTTTTCHHHHT---TCSEEEEECGGGH
T ss_pred             HHHHHhcCCCCEEEEeCCCCccCcch-------h-h-hccCcEEEEEecCcchhhHhhhhhHhh---cCCEEEEeccccC
Confidence            34433334679999999996532111       0 1 1235567777753221110 0011111   2345899999964

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.41  E-value=2e-06  Score=81.27  Aligned_cols=136  Identities=21%  Similarity=0.160  Sum_probs=77.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.+||||||+...|.      |.+. .+...   |.           ..+......               +.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~------g~~~-~~~~~---~~-----------~t~~~~~~~---------------~~   46 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALT------GLRQ-HVGNW---PG-----------VTVEKKEGI---------------ME   46 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHH------TTCE-EEEEC---TT-----------SSCEEEEEE---------------EE
T ss_pred             eeEEEEECCCCCCHHHHHHHHh------CCCc-ccCCC---CC-----------eEEEeeEEE---------------EE
Confidence            4568999999999999998886      4433 12111   00           111111100               01


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHH--HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcC-CeeEEEEccCCCCC---
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTKLDGDS---  168 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el--~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~-~i~GvIlNk~D~~~---  168 (403)
                      ..++.+.|+||||..........+.  ......-.++.+++|+|+..............+.. ...-+|+||+|...   
T Consensus        47 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~  126 (271)
T 3k53_A           47 YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKG  126 (271)
T ss_dssp             ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred             ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence            2456799999999775432222211  11222235789999999977654444443333222 33458999999321   


Q ss_pred             chhHHHHHHHHhCCCeEE
Q 015657          169 RGGAALSVKEVSGKPIKL  186 (403)
Q Consensus       169 ~~~~~~~~~~~~g~pi~f  186 (403)
                      .......+.+.+|+|+.+
T Consensus       127 ~~~~~~~l~~~lg~~~~~  144 (271)
T 3k53_A          127 AKIDIKKMRKELGVPVIP  144 (271)
T ss_dssp             CCCCHHHHHHHHSSCEEE
T ss_pred             cHHHHHHHHHHcCCcEEE
Confidence            111255677788988843

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.40  E-value=2.5e-06  Score=80.26  Aligned_cols=136  Identities=18%  Similarity=0.085  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.+||||||+...|.      |.+.. +..-   |..           .+......               +...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~------g~~~~-v~~~---pg~-----------Tv~~~~~~---------------~~~~   46 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALT------NANQR-VGNW---PGV-----------TVEKKTGE---------------FLLG   46 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHH------TTSEE-EEEC---TTS-----------SSEEEEEE---------------EEET
T ss_pred             EEEEECCCCCCHHHHHHHHH------CCCCC-ccCC---CCc-----------eEEEEEEE---------------EEEC
Confidence            47899999999999998886      44432 1111   110           11111000               0014


Q ss_pred             CCcEEEEeCCCCccccHH----hHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKA----MMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~----l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      +.++.|+||||.......    ...+ + ......-.++.+++|+|+............+.+.-...-+|+||+|.... 
T Consensus        47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~  126 (256)
T 3iby_A           47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHR  126 (256)
T ss_dssp             TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred             CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence            568999999998654321    1111 1 11222245799999999977655555444444333345589999995322 


Q ss_pred             --hhHHHHHHHHhCCCeEEee
Q 015657          170 --GGAALSVKEVSGKPIKLVG  188 (403)
Q Consensus       170 --~~~~~~~~~~~g~pi~fig  188 (403)
                        ......+.+.+|+|+.++.
T Consensus       127 ~~~~~~~~l~~~lg~~vi~~S  147 (256)
T 3iby_A          127 GISIDTEKLESLLGCSVIPIQ  147 (256)
T ss_dssp             TCEECHHHHHHHHCSCEEECB
T ss_pred             CcHHHHHHHHHHcCCCEEEEE
Confidence              1234556777899985543

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=98.40  E-value=5.6e-07  Score=79.59  Aligned_cols=41  Identities=22%  Similarity=0.136  Sum_probs=36.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .+.+++++|.+||||||++.+|+..|..+|++|.++..|+.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            46789999999999999999999999999999999998875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.37  E-value=5.2e-06  Score=88.49  Aligned_cols=211  Identities=18%  Similarity=0.175  Sum_probs=112.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh---CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~---~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      .+.+.++++|..|+||||++..|+.....   .| .|  .+..... .. .... .  ..++.+......          
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~-d~-~~~e-~--~~giti~~~~~~----------   68 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTT-DY-TPEA-K--LHRTTVRTGVAP----------   68 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSS-CC-SHHH-H--HTTSCCSCEEEE----------
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccc-cC-CHHH-H--hcCCeEEecceE----------
Confidence            35678999999999999999999865432   22 22  1111000 00 0110 0  112211110000          


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCC
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDG  166 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~  166 (403)
                         +.+..+.+.|+||||...+.....    ....  ..+.+++|+|+..+  ........... ..+.+ -+|+||+|.
T Consensus        69 ---~~~~~~~~nliDTpG~~~f~~~~~----~~l~--~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~-ilv~NKiD~  138 (665)
T 2dy1_A           69 ---LLFRGHRVFLLDAPGYGDFVGEIR----GALE--AADAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKLDK  138 (665)
T ss_dssp             ---EEETTEEEEEEECCCSGGGHHHHH----HHHH--HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECGGG
T ss_pred             ---EeeCCEEEEEEeCCCccchHHHHH----HHHh--hcCcEEEEEcCCcccchhHHHHHHHHHHccCCE-EEEecCCch
Confidence               012467899999999764432222    2222  24889999998543  22222222222 23333 388999997


Q ss_pred             CCc-hhHHHHHHHHhCCCeE----EeeccCCcCCCCC--------C---------CchhhhhhhcCCccHHHHHHHHHHH
Q 015657          167 DSR-GGAALSVKEVSGKPIK----LVGRGERMEDLEP--------F---------YPDRMAGRILGMGDVLSFVEKAQEV  224 (403)
Q Consensus       167 ~~~-~~~~~~~~~~~g~pi~----fig~ge~v~~l~~--------f---------~~~~~~~r~lG~~dv~~l~e~~~e~  224 (403)
                      ... ...+..+.+.++ .+.    +++.+..+..+..        |         .|.++.+      .+...++++.+.
T Consensus       139 ~~~~~~~~~~l~~~l~-~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~r~~l~e~  211 (665)
T 2dy1_A          139 GGDYYALLEDLRSTLG-PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE------RVQRFRQEVLEA  211 (665)
T ss_dssp             CCCHHHHHHHHHHHHC-SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH------HHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhC-CcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHH------HHHHHHHHHHHH
Confidence            522 234455666666 221    2333222221100        0         0112211      134556667777


Q ss_pred             hhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015657          225 MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG  258 (403)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g  258 (403)
                      +.+.+++.+.+.+...+++.+++...++.....|
T Consensus       212 ~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~  245 (665)
T 2dy1_A          212 IVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRG  245 (665)
T ss_dssp             HHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence            7666666677777777899999999998887766

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.36  E-value=2.1e-06  Score=82.91  Aligned_cols=118  Identities=16%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .++-.|+++|.+||||||+...|.      |.++.++...++...        ...  ..++.                 
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~~~tT~--------~~~--~~~~~-----------------   54 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPKAGTTR--------MRV--LGVKN-----------------   54 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSCCCC--------SCE--EEEEE-----------------
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHh------CCCccccCCCCCcee--------eEE--EEEEe-----------------
Confidence            455788999999999999998886      555543332211100        000  01111                 


Q ss_pred             HHhC-CCcEEEEeCCCCcccc------HHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHH-HHHhhhcCCeeEEEEc
Q 015657           93 AKKK-NVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL-VTTFNIEIGITGAILT  162 (403)
Q Consensus        93 ~~~~-~~D~VIIDtpg~l~~d------~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~-~~~~~~~~~i~GvIlN  162 (403)
                        .. +++++|+||||.....      ..+........  -.+|.+++|+|+...  ...... ...+...-...-+|+|
T Consensus        55 --~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~N  130 (308)
T 3iev_A           55 --IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVIN  130 (308)
T ss_dssp             --ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred             --cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEE
Confidence              13 7899999999986533      22222222221  245899999999533  222333 3333332223458999


Q ss_pred             cCCCC
Q 015657          163 KLDGD  167 (403)
Q Consensus       163 k~D~~  167 (403)
                      |+|..
T Consensus       131 K~Dl~  135 (308)
T 3iev_A          131 KIDKI  135 (308)
T ss_dssp             CGGGS
T ss_pred             CccCC
Confidence            99975

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.27  E-value=7.6e-06  Score=77.58  Aligned_cols=137  Identities=18%  Similarity=0.092  Sum_probs=77.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.+||||||+...|.      |.+. .+...   |..           .+......               +.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~------g~~~-~v~~~---~g~-----------t~~~~~~~---------------~~   46 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLT------GSRQ-RVGNW---AGV-----------TVERKEGQ---------------FS   46 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH------TTCE-EEEEC---TTS-----------SSEEEEEE---------------EE
T ss_pred             ccEEEEECCCCCCHHHHHHHHh------CCCc-ccCCC---CCe-----------eEEEEEEE---------------EE
Confidence            3568899999999999998886      4443 22211   110           01111000               00


Q ss_pred             hCCCcEEEEeCCCCccccH-----HhHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDK-----AMMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~-----~l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..++.+.|+||||......     .+...+ ..+...-.++.+++|+|+............+.+.-...-+|+||+|...
T Consensus        47 ~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE  126 (274)
T ss_dssp             CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred             eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence            1457899999999765431     111111 1122223578999999997655444444333332233458999999532


Q ss_pred             ch---hHHHHHHHHhCCCeEEe
Q 015657          169 RG---GAALSVKEVSGKPIKLV  187 (403)
Q Consensus       169 ~~---~~~~~~~~~~g~pi~fi  187 (403)
                      ..   .....+.+.+|+|+.++
T Consensus       127 ~~~~~~~~~~l~~~lg~~~i~~  148 (274)
T 3i8s_A          127 KQNIRIEIDALSARLGCPVIPL  148 (274)
T ss_dssp             HTTEEECHHHHHHHHTSCEEEC
T ss_pred             hhhHHHHHHHHHHhcCCCEEEE
Confidence            21   23455677788888544

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.26  E-value=5e-07  Score=93.78  Aligned_cols=151  Identities=19%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.+.|+|+|.+|+||||++..|+.+-.... +..-++. +..+....+.. ......|+.+.....             .
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~-~~g~v~~~~~~~~~~~d~~-~~e~~~GiTi~~~~~-------------~   76 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQ-LAGTIKSRKAARHATSDWM-ELEKQRGISVTTSVM-------------Q   76 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHH-HHHHHHTC----CCHHHHH-HHHHHHCCSSSSSEE-------------E
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcc-cceeeeccccccceecccc-hhhhcCCeeEEEeEE-------------E
Confidence            467899999999999999999864321100 0000000 00011111111 111122332211100             0


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc-
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      +...++.+.||||||...+.......      ...++.+++|+|+..+  .............-...-+|+||+|.... 
T Consensus        77 ~~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           77 FPYKDYLINLLDTPGHADFTEDTYRT------LTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             EEETTEEEEEECCCCSTTCCHHHHHG------GGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred             EEeCCEEEEEEECCCchhHHHHHHHH------HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence            01357899999999986554332222      1235899999999643  22222222222221234589999997532 


Q ss_pred             -hhHHHHHHHHhCCCeE
Q 015657          170 -GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 -~~~~~~~~~~~g~pi~  185 (403)
                       ...+..+.+.++.++.
T Consensus       151 ~~~~l~ei~~~l~~~~~  167 (528)
T 3tr5_A          151 SIELLDEIESILRIHCA  167 (528)
T ss_dssp             HHHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHHHHhhCCCce
Confidence             2445667777877543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.21  E-value=5e-06  Score=78.13  Aligned_cols=40  Identities=38%  Similarity=0.612  Sum_probs=35.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ++.+|+++|.+||||||++..|+..|...|+.+++++.|.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~   42 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL   42 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence            4678999999999999999999999988899988788873

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.21  E-value=6.2e-06  Score=77.57  Aligned_cols=137  Identities=20%  Similarity=0.229  Sum_probs=76.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.+||||||+...|.      |.+.. +..-   |+.           .+......               +.
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~~~---pg~-----------tv~~~~~~---------------~~   48 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALT------GTKQY-VANW---PGV-----------TVEKKEGV---------------FT   48 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH------TTCEE-EEEC---TTS-----------CCEEEEEE---------------EE
T ss_pred             ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccCC---CCc-----------eEEEEEEE---------------EE
Confidence            3458899999999999998886      44432 1110   110           01111000               00


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCch--
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRG--  170 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~--  170 (403)
                      ..++.+.|+||||..........+ + ..+...-.++.+++|+|+...+........+.+.-...-+|+||+|.....  
T Consensus        49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i  128 (258)
T 3a1s_A           49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGM  128 (258)
T ss_dssp             ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred             ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccch
Confidence            146789999999986542211111 1 122222357899999999765554444433333223345899999953211  


Q ss_pred             -hHHHHHHHHhCCCeEEe
Q 015657          171 -GAALSVKEVSGKPIKLV  187 (403)
Q Consensus       171 -~~~~~~~~~~g~pi~fi  187 (403)
                       .....+.+.+|+|+.++
T Consensus       129 ~~~~~~l~~~lg~~vi~~  146 (258)
T 3a1s_A          129 KIDRYELQKHLGIPVVFT  146 (258)
T ss_dssp             CBCHHHHHHHHCSCEEEC
T ss_pred             HHHHHHHHHHcCCCEEEE
Confidence             12456677788888443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.20  E-value=1.4e-05  Score=72.05  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=32.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +..+++++|++|+||||++..|+.   ..|.+|++++.+.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~   55 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG   55 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence            357899999999999999999998   5688999999886

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.20  E-value=2.3e-05  Score=77.10  Aligned_cols=137  Identities=16%  Similarity=0.123  Sum_probs=72.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+..++++|.+||||||+...|+      |..+. +...++.            ...+.+...                 
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~~~~------------t~~~~~~~~-----------------  209 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASYPFT------------TRGINVGQF-----------------  209 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECCTTC------------SSCEEEEEE-----------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCCCCe------------eeceeEEEE-----------------
Confidence            45678999999999999998886      33332 1111110            000111100                 


Q ss_pred             HhCCCcEEEEeCCCCccccH----Hh-HHHHHHHhhhcCCceEEEEEeccc-----HHHHHHHHHHhhhc--CCeeEEEE
Q 015657           94 KKKNVDVVIVDTAGRLQIDK----AM-MDELKDVKRVLNPTEVLLVVDAMT-----GQEAAALVTTFNIE--IGITGAIL  161 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~----~l-~~el~~i~~~~~~~~vllVvda~~-----g~~~~~~~~~~~~~--~~i~GvIl  161 (403)
                      ...++++.++||||......    .. ...+..  ....++.+++|+|+..     ..........+...  -...-+|+
T Consensus       210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~  287 (357)
T 2e87_A          210 EDGYFRYQIIDTPGLLDRPISERNEIEKQAILA--LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI  287 (357)
T ss_dssp             EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG--GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             EecCceEEEEeCCCccccchhhhhHHHHHHHHH--HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            01356899999999864311    01 111111  1224688999999743     23333333333221  12344889


Q ss_pred             ccCCCCCchhH--HHHHHHHhCCCeEEee
Q 015657          162 TKLDGDSRGGA--ALSVKEVSGKPIKLVG  188 (403)
Q Consensus       162 Nk~D~~~~~~~--~~~~~~~~g~pi~fig  188 (403)
                      ||+|.......  +.......+.|+.+++
T Consensus       288 NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS  316 (357)
T 2e87_A          288 NKIDVADEENIKRLEKFVKEKGLNPIKIS  316 (357)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred             ECcccCChHHHHHHHHHHHhcCCCeEEEe
Confidence            99998754432  2333334566664444

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.18  E-value=3.2e-05  Score=70.78  Aligned_cols=41  Identities=32%  Similarity=0.324  Sum_probs=37.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +..+++++|++|+||||++.+++..+...|.+|++++.+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            35789999999999999999999999988999999998854

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.14  E-value=1.3e-05  Score=79.27  Aligned_cols=91  Identities=22%  Similarity=0.283  Sum_probs=58.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc-cCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~-~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +..++.|+|.+|+||||+|.+++..+++.|.+|++++++.......  ....+.. .++.+...   ... +.+...+..
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~--a~~~g~d~~~l~i~~~---~~~-e~~l~~l~~  146 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY--ARALGVNTDELLVSQP---DNG-EQALEIMEL  146 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHHTTCCGGGCEEECC---SSH-HHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH--HHHcCCCHHHceeecC---CcH-HHHHHHHHH
Confidence            3578899999999999999999999999999999999985322111  1111110 11122211   122 333333333


Q ss_pred             H-HhCCCcEEEEeCCCCcc
Q 015657           93 A-KKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        93 ~-~~~~~D~VIIDtpg~l~  110 (403)
                      + +...+++||||+...+.
T Consensus       147 l~~~~~~~lVVIDsl~~l~  165 (366)
T 1xp8_A          147 LVRSGAIDVVVVDSVAALT  165 (366)
T ss_dssp             HHTTTCCSEEEEECTTTCC
T ss_pred             HHhcCCCCEEEEeChHHhc
Confidence            3 23579999999988764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.13  E-value=1.5e-05  Score=76.63  Aligned_cols=120  Identities=18%  Similarity=0.149  Sum_probs=65.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.+||||||+...|.      |.++.++...++   ..        ...+..+.                  ..
T Consensus         8 g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~~~~---tT--------r~~i~~i~------------------~~   52 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLL------GVKVAPISPRPQ---TT--------RKRLRGIL------------------TE   52 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSC---CC--------CSCEEEEE------------------EE
T ss_pred             CEEEEECCCCCCHHHHHHHHh------CCceeeecCCCC---ce--------eEEEEEEE------------------Ee
Confidence            458999999999999998887      555533322111   10        00011010                  02


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHH--HhhhcCCceEEEEEecccH--HHHHHHHHHhhhc--CCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIE--IGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~--i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~--~~i~GvIlNk~D~~~~  169 (403)
                      .++.++|+||||.......+...+..  ....-.++.+++|+|+...  .........+...  -.+.-+|+||+|....
T Consensus        53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A           53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY  132 (301)
T ss_dssp             TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred             CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence            46789999999976432211111111  1122346889999998532  2212222223221  2234589999997644


Q ss_pred             h
Q 015657          170 G  170 (403)
Q Consensus       170 ~  170 (403)
                      .
T Consensus       133 ~  133 (301)
T 1wf3_A          133 P  133 (301)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.12  E-value=1.5e-05  Score=76.70  Aligned_cols=121  Identities=19%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+...++++|.+|+||||+...|.      |.++.++...++   .     +.....+  ++.                 
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~~~~---t-----Tr~~~~g--i~~-----------------   52 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKAQ---T-----TRHRIVG--IHT-----------------   52 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHH------TCSEEECCCCSS---C-----CSSCEEE--EEE-----------------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHH------CCCccccCCCCC---c-----ceeeEEE--EEE-----------------
Confidence            345679999999999999998888      667755432221   1     0000011  111                 


Q ss_pred             HHhCCCcEEEEeCCCCc-cccHHhHHHHHH-Hhhhc-CCceEEEEEecccH-HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           93 AKKKNVDVVIVDTAGRL-QIDKAMMDELKD-VKRVL-NPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l-~~d~~l~~el~~-i~~~~-~~~~vllVvda~~g-~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                        ..++.++++||||.. .....+-..+.. ....+ ..+.+++|+|+..- ......+..+...-.+.-+|+||+|...
T Consensus        53 --~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           53 --EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             --ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred             --ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence              246789999999975 211111111111 11111 34667888998321 1111222233322233458889999865

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.11  E-value=6.9e-06  Score=80.99  Aligned_cols=92  Identities=18%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc-CCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV-GVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~-gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +..++.|.|++|+||||++..++..++..|.+|++|++.......  ....++-.. ++.+..   .....+.+..+-..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~---~~~~e~~l~~~~~l  134 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQ---PDHGEQALEIVDEL  134 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEEC---CSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhh---ccCHHHHHHHHHHH
Confidence            358999999999999999999999999999999999987432111  111121111 111221   12233333322222


Q ss_pred             HHhCCCcEEEEeCCCCcc
Q 015657           93 AKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~  110 (403)
                      ++...+|++|||+...+.
T Consensus       135 ~~~~~~dlvVIDSi~~l~  152 (356)
T 3hr8_A          135 VRSGVVDLIVVDSVAALV  152 (356)
T ss_dssp             HHTSCCSEEEEECTTTCC
T ss_pred             hhhcCCCeEEehHhhhhc
Confidence            334679999999977664

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.10  E-value=7.2e-06  Score=80.93  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=58.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhh-ccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-QVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~-~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.+++.++|++|+||||+|.+++..+++.|.+|++++++......  ....++. ..++.++..    ...+.+.+.+..
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~--~a~~~g~~~~~l~i~~~----~~~e~~~~~~~~  135 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQP----DTGEQALEICDA  135 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCCGGGCEEECC----SSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH--HHHHcCCChhheeeeCC----CCHHHHHHHHHH
Confidence            457899999999999999999999999999999999986322111  1111111 111222211    122333333333


Q ss_pred             H-HhCCCcEEEEeCCCCcc
Q 015657           93 A-KKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        93 ~-~~~~~D~VIIDtpg~l~  110 (403)
                      + +..++|+||||+...+.
T Consensus       136 l~~~~~~~lVVIDsl~~l~  154 (356)
T 1u94_A          136 LARSGAVDVIVVDSVAALT  154 (356)
T ss_dssp             HHHHTCCSEEEEECGGGCC
T ss_pred             HHhccCCCEEEEcCHHHhc
Confidence            3 24689999999988765

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.10  E-value=5.2e-05  Score=73.30  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEe--CC---CCCCHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AG---TEVKPSQIAKQ   88 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~--~~---~~~~~~~~~~~   88 (403)
                      +..+++++|.+|+||||++.++|..++.+|.+|+++++..........+.  +...+++...  .+   ........+..
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~--~~~~~i~~~~l~~~~~~l~~~~~~~l~~  144 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDWGKLSM  144 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHH--HHHTTCCHHHHHSCHHHHCSSCHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcCCCCCCHHHHHHHHH
Confidence            45789999999999999999999999998999999998844333222221  1122333110  00   00111233444


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      +...+.  ...+.|.|+++ ... ..+...+..+.....+.+.++|+|.
T Consensus       145 a~~~l~--~~~i~i~d~~~-~~~-~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          145 AIGEIS--NSNINIFDKAG-QSV-NYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HHHHHH--TSCEEEECCSC-CBH-HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             HHHHHh--CCCEEEECCCC-CCH-HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            455552  45677777765 222 2333334444433344555888887

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.06  E-value=0.00048  Score=62.56  Aligned_cols=116  Identities=19%  Similarity=0.200  Sum_probs=60.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ....|+++|.+||||||+...|.      +.+.. +. + + +..     .  .  .+.+...                 
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~------~~~~~-~~-~-~-~~~-----t--~--~~~~~~~-----------------   71 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVS------RANVD-VQ-S-Y-SFT-----T--K--NLYVGHF-----------------   71 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHT------TTCEE-EE-C-C---------------CEEEEEE-----------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cC-C-C-CCc-----c--e--eeeeeee-----------------
Confidence            34668999999999999998776      33432 11 1 1 000     0  0  0111000                 


Q ss_pred             HhCCCcEEEEeCCCCcccc--HH---hHHHHHHHhhhcCCceEEEEEecccH-----HHHHHHHHHhhhc--CCeeEEEE
Q 015657           94 KKKNVDVVIVDTAGRLQID--KA---MMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVTTFNIE--IGITGAIL  161 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d--~~---l~~el~~i~~~~~~~~vllVvda~~g-----~~~~~~~~~~~~~--~~i~GvIl  161 (403)
                      ...++.+.|+||||.....  ..   ....+..+  .-.++.+++|+|+...     ......+..+...  -...-+|+
T Consensus        72 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~  149 (228)
T 2qu8_A           72 DHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGF  149 (228)
T ss_dssp             EETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEE
T ss_pred             ecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEE
Confidence            0135789999999985321  10   01222222  2234788999998532     2222333333331  22345899


Q ss_pred             ccCCCC
Q 015657          162 TKLDGD  167 (403)
Q Consensus       162 Nk~D~~  167 (403)
                      ||+|..
T Consensus       150 nK~Dl~  155 (228)
T 2qu8_A          150 NKIDKC  155 (228)
T ss_dssp             ECGGGC
T ss_pred             eCcccC
Confidence            999964

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.05  E-value=1.8e-05  Score=68.30  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=47.9

Q ss_pred             CCCcEEEEeCCCCccccHH-hHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc---h
Q 015657           96 KNVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR---G  170 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~-l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~---~  170 (403)
                      .++.+.|+||||....... ....+ ........++.+++|+|+............+...-...-+|.||+|....   .
T Consensus        48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  127 (165)
T 2wji_A           48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE  127 (165)
T ss_dssp             TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCC
T ss_pred             CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChh
Confidence            3567999999997653211 00111 11112225688999999976544333333333222234588999995311   1


Q ss_pred             hHHHHHHHHhCCCe
Q 015657          171 GAALSVKEVSGKPI  184 (403)
Q Consensus       171 ~~~~~~~~~~g~pi  184 (403)
                      .....+.+..+.|+
T Consensus       128 ~~~~~~~~~~~~~~  141 (165)
T 2wji_A          128 IDVDKLEKILGVKV  141 (165)
T ss_dssp             CCHHHHHHHHTSCE
T ss_pred             hHHHHHHHHhCCCE
Confidence            12345556667665

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.04  E-value=3e-05  Score=70.15  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=36.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +..+++++|++|+||||++..|+..+...+.+|++++.+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~   62 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES   62 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence            34789999999999999999999888877889999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.04  E-value=3.1e-05  Score=67.73  Aligned_cols=136  Identities=19%  Similarity=0.184  Sum_probs=72.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ++..|+++|.+||||||+...|+      +.+.. +. +  .|.           ..+......               +
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~-~--~~~-----------~t~~~~~~~---------------~   49 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALT------GENVY-IG-N--WPG-----------VTVEKKEGE---------------F   49 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH------TTCEE-EE-E--CTT-----------SCCEEEEEE---------------E
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh------CCCcc-cc-C--CCC-----------eeccceEEE---------------E
Confidence            34678999999999999998876      33321 11 0  010           001111000               0


Q ss_pred             HhCCCcEEEEeCCCCccccHH-hHHHH-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc--
Q 015657           94 KKKNVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR--  169 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~-l~~el-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~--  169 (403)
                      ...++.+.|+||||....... ....+ ..+.....++.+++|+|+...+........+...-...-+|.||+|....  
T Consensus        50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  129 (188)
T 2wjg_A           50 EYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLG  129 (188)
T ss_dssp             EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT
T ss_pred             EeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcccccc
Confidence            013578999999997654210 00011 11112123588899999976544444333333222234488999995321  


Q ss_pred             -hhHHHHHHHHhCCCeE
Q 015657          170 -GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 -~~~~~~~~~~~g~pi~  185 (403)
                       ...+..+.+..+.++.
T Consensus       130 ~~~~~~~~~~~~~~~~~  146 (188)
T 2wjg_A          130 IEIDVDKLEKILGVKVV  146 (188)
T ss_dssp             CCCCHHHHHHHHTSCEE
T ss_pred             chHHHHHHHHHhCCCeE
Confidence             1234556666777663

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.04  E-value=1.8e-05  Score=75.03  Aligned_cols=136  Identities=24%  Similarity=0.173  Sum_probs=74.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.+||||||+...|.      |.+.. +. +  .|             |+.+......             +.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~-v~-~--~p-------------g~tv~~~~~~-------------~~   46 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLIT------GHNQR-VG-N--WP-------------GVTVERKSGL-------------VK   46 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH------CCCCC-CC-S--SS-------------CCCCSCEEEE-------------CT
T ss_pred             ceEEEEECCCCCCHHHHHHHHH------CCCCc-cc-C--CC-------------CCcEEEEEEE-------------Ee
Confidence            3568999999999999998886      43210 00 0  01             1111000000             01


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHH-H-HHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCc---
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR---  169 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~e-l-~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~---  169 (403)
                      . ++++.|+||||..........+ + ......-.++.+++|+|++..+........+.+.-.+.-+++||+|....   
T Consensus        47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~  125 (272)
T 3b1v_A           47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK  125 (272)
T ss_dssp             T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTC
T ss_pred             c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCc
Confidence            2 5689999999976542111111 1 11122124788999999977655444433333322234588999995321   


Q ss_pred             hhHHHHHHHHhCCCeEEe
Q 015657          170 GGAALSVKEVSGKPIKLV  187 (403)
Q Consensus       170 ~~~~~~~~~~~g~pi~fi  187 (403)
                      ......+.+.+|+|+..+
T Consensus       126 ~~~~~~l~~~lg~~vi~~  143 (272)
T 3b1v_A          126 KINVDKLSYHLGVPVVAT  143 (272)
T ss_dssp             CCCHHHHHHHHTSCEEEC
T ss_pred             HHHHHHHHHHcCCCEEEE
Confidence            123455666788887444

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.01  E-value=1.5e-05  Score=74.39  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +...|+++|.+||||||+...|.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~   43 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSIL   43 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHh
Confidence            45678999999999999998886

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.00  E-value=2.7e-05  Score=68.51  Aligned_cols=70  Identities=14%  Similarity=0.047  Sum_probs=38.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-cHHHHHHHHHH---hhh-------cCCeeEEEEccC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTT---FNI-------EIGITGAILTKL  164 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-~g~~~~~~~~~---~~~-------~~~i~GvIlNk~  164 (403)
                      ..+.+.|+||||...........+....  -.++.+++|+|+. ...........   +..       .-...-+|+||+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  166 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRA--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS  166 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHG--GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECT
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhc--ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEch
Confidence            4678999999997654322222222111  1247889999997 44333322221   110       112344888999


Q ss_pred             CCC
Q 015657          165 DGD  167 (403)
Q Consensus       165 D~~  167 (403)
                      |..
T Consensus       167 Dl~  169 (193)
T 2ged_A          167 ELF  169 (193)
T ss_dssp             TST
T ss_pred             Hhc
Confidence            964

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.99  E-value=6.8e-05  Score=63.35  Aligned_cols=85  Identities=18%  Similarity=0.062  Sum_probs=47.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---Hhhhc-CCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNIE-IGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~~-~~i~GvIlNk~D~~~  168 (403)
                      ..+++.|+||||....... ..   ....  ..+.+++|+|.........   ...   .+... -...-+|+||+|...
T Consensus        49 ~~~~~~~~D~~G~~~~~~~-~~---~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           49 ETCLLDILDTAGQEEYSAM-RD---QYMR--TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             EEEEEEEEECCCCSSCCHH-HH---HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EEEEEEEEECCCchhhhHH-HH---Hhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence            3578899999997543221 11   1111  2478899999865432222   122   22211 123458999999643


Q ss_pred             c---hhHHHHHHHHhCCCeEE
Q 015657          169 R---GGAALSVKEVSGKPIKL  186 (403)
Q Consensus       169 ~---~~~~~~~~~~~g~pi~f  186 (403)
                      .   ...+..+.+..+.|+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~  143 (166)
T 2ce2_X          123 RTVESRQAQDLARSYGIPYIE  143 (166)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEE
T ss_pred             cccCHHHHHHHHHHcCCeEEE
Confidence            2   33445566677877643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.99  E-value=3.4e-05  Score=77.13  Aligned_cols=130  Identities=19%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +...|+++|..|+||||++..|...+.+.|+....   +  .....+... .....|+.+.....             .+
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~---~--~~~~~d~~~-~e~~~GiTi~~~~~-------------~~   70 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEV---K--DYGDIDKAP-EERARGITINTAHV-------------EY   70 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCC---C--CHHHHSCSH-HHHHHTCCCSCEEE-------------EE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccc---c--chhhccCCH-HHHHcCCCEEeeee-------------Ee
Confidence            44668999999999999999999887777642100   0  000011000 00111221100000             00


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      ...++.+.|+||||...+...+    ..  ....+|.+++|+|+..+  ......+.... ..++..-+++||+|...
T Consensus        71 ~~~~~~~~iiDtpG~~~f~~~~----~~--~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~  142 (405)
T 2c78_A           71 ETAKRHYSHVDCPGHADYIKNM----IT--GAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             ECSSCEEEEEECCCSGGGHHHH----HH--HHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred             ccCCeEEEEEECCChHHHHHHH----HH--HHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence            1246889999999975432221    11  12346899999999543  22222222221 12332347899999753

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.99  E-value=3.5e-05  Score=75.75  Aligned_cols=91  Identities=19%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhc-cCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~-~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +..++.+.|++|+||||++.+++..+.+.|.+|++++++......  ....++-. .++.+..   .....+.+ +.+..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a~~lG~~~~~l~i~~---~~~~e~~l-~~~~~  133 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YAKKLGVDTDSLLVSQ---PDTGEQAL-EIADM  133 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCCGGGCEEEC---CSSHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HHHHcCCCHHHeEEec---CCCHHHHH-HHHHH
Confidence            457899999999999999999999999999999999988432111  11111110 1122221   11222222 23332


Q ss_pred             H-HhCCCcEEEEeCCCCcc
Q 015657           93 A-KKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        93 ~-~~~~~D~VIIDtpg~l~  110 (403)
                      + ...++++||||.+..+.
T Consensus       134 l~~~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          134 LVRSGALDIIVIDSVAALV  152 (349)
T ss_dssp             HHTTTCCSEEEEECGGGCC
T ss_pred             HHhcCCCCEEEEcChHhhc
Confidence            2 23569999999988764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.99  E-value=5.5e-05  Score=74.29  Aligned_cols=74  Identities=16%  Similarity=0.336  Sum_probs=43.4

Q ss_pred             CCcEEEEeCCCCccc-----cHHhHHHHHHHh--hhcCCceEEEEEecc----cHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           97 NVDVVIVDTAGRLQI-----DKAMMDELKDVK--RVLNPTEVLLVVDAM----TGQEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~-----d~~l~~el~~i~--~~~~~~~vllVvda~----~g~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                      ..++.|+||||....     .......+..+.  ..-.++.+++|+++.    ..++....+..+.......-+|+||+|
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence            468999999997653     111111111111  123578888888863    224445566666554444568999999


Q ss_pred             CCCch
Q 015657          166 GDSRG  170 (403)
Q Consensus       166 ~~~~~  170 (403)
                      .....
T Consensus       215 l~~~~  219 (360)
T 3t34_A          215 LMDKG  219 (360)
T ss_dssp             GCCTT
T ss_pred             cCCCc
Confidence            65433

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.98  E-value=5.1e-05  Score=69.83  Aligned_cols=137  Identities=19%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ....|+++|.+||||||+...|.      |.++.  ..  ..+..     ...  ........                 
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~------g~~~~--~~--~~~~~-----~~t--~~~~~~~~-----------------   73 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSIL------GRKVF--HS--GTAAK-----SIT--KKCEKRSS-----------------   73 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH------TSCCS--CC--------------C--CSCEEEEE-----------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHc------CCCcC--cc--CCCCC-----cee--eeEEEEEE-----------------
Confidence            34668999999999999998877      43331  00  00000     000  00100000                 


Q ss_pred             HhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhh--cCCceEEEEEeccc--HH--HHHHHH-HHhhhc-CCeeEEEEc
Q 015657           94 KKKNVDVVIVDTAGRLQID---KAMMDELKDVKRV--LNPTEVLLVVDAMT--GQ--EAAALV-TTFNIE-IGITGAILT  162 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~--~~~~~vllVvda~~--g~--~~~~~~-~~~~~~-~~i~GvIlN  162 (403)
                      ...+..+.|+||||.....   .....++......  ..++.+++|+|+..  ..  .....+ ..+... ....-+|+|
T Consensus        74 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~n  153 (239)
T 3lxx_A           74 SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFT  153 (239)
T ss_dssp             EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred             EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEe
Confidence            0245689999999976431   2222233332222  24588999999732  11  122211 223222 224558999


Q ss_pred             cCCCCCch----------hHHHHHHHHhCCCe
Q 015657          163 KLDGDSRG----------GAALSVKEVSGKPI  184 (403)
Q Consensus       163 k~D~~~~~----------~~~~~~~~~~g~pi  184 (403)
                      |+|.....          ..+..+.+.++.++
T Consensus       154 K~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~  185 (239)
T 3lxx_A          154 RKDDLGDTNLHDYLREAPEDIQDLMDIFGDRY  185 (239)
T ss_dssp             CGGGC------------CHHHHHHHHHHSSSE
T ss_pred             CCccCCcccHHHHHHhchHHHHHHHHHcCCEE
Confidence            99953221          23455556666554

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.98  E-value=9.1e-05  Score=75.13  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=70.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEe--CC---CCCCHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--AG---TEVKPSQIAKQ   88 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~--~~---~~~~~~~~~~~   88 (403)
                      +..+++++|.+|+||||++.++|...+.+|.+|+++++..........+.  +...+++...  .+   ........+..
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~--~~~~~i~~~~l~~g~~~l~~~~~~~l~~  273 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDWGKLSM  273 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHH--HHHSCCCHHHHHHTGGGTCCSCHHHHHH
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcccCCCCHHHHHHHHH
Confidence            45789999999999999999999999988999999999865444333321  2222333111  00   11112233444


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      +...+.  ...+.|.|+|+ +.. ..+...+..+.....++..++|||.
T Consensus       274 a~~~l~--~~~l~i~d~~~-~s~-~~i~~~ir~l~~~~~~~~~lIVID~  318 (444)
T 3bgw_A          274 AIGEIS--NSNINIFDKAG-QSV-NYIWSKTRQTKRKNPGKRVIVMIDY  318 (444)
T ss_dssp             HHHHHH--TSCEEEECCSS-CBH-HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred             HHHHHh--cCCEEEECCCC-CCH-HHHHHHHHHHHHHhCCCCeEEEEec
Confidence            555553  45677777765 322 2233333444333344555888887

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.96  E-value=4.9e-05  Score=64.84  Aligned_cols=83  Identities=19%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhhh---cCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~~---~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.........    ..  .-.++.+++|+|+.......   .....+..   .-...-+|+||+|...+ 
T Consensus        51 ~~~~~l~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  124 (170)
T 1g16_A           51 KVKLQIWDTAGQERFRTITT----AY--YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV  124 (170)
T ss_dssp             EEEEEEECCTTGGGTSCCCH----HH--HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC
T ss_pred             EEEEEEEeCCCChhhhhhHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc
Confidence            46899999999643221111    11  12347889999986553322   11222211   12234589999997432 


Q ss_pred             --hhHHHHHHHHhCCCeE
Q 015657          170 --GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 --~~~~~~~~~~~g~pi~  185 (403)
                        ...+..+....+.|+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~  142 (170)
T 1g16_A          125 VTADQGEALAKELGIPFI  142 (170)
T ss_dssp             SCHHHHHHHHHHHTCCEE
T ss_pred             cCHHHHHHHHHHcCCeEE
Confidence              2334555666777763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.93  E-value=3.8e-05  Score=67.42  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D   52 (403)
                      +...++++|++|+||||++..++..+. ..|..|..+++.
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~   76 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK   76 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            357889999999999999999999997 779888877754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.89  E-value=7.5e-05  Score=71.41  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=39.2

Q ss_pred             CCcEEEEeCCCCcccc---------HHhHHHHHHHhhhcCCceEEEEEec-ccH---HHHHHHHHHhhhcCCeeEEEEcc
Q 015657           97 NVDVVIVDTAGRLQID---------KAMMDELKDVKRVLNPTEVLLVVDA-MTG---QEAAALVTTFNIEIGITGAILTK  163 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d---------~~l~~el~~i~~~~~~~~vllVvda-~~g---~~~~~~~~~~~~~~~i~GvIlNk  163 (403)
                      .++++|+||||.....         ..+.....  ...-.++.+++|+|+ ..+   .+....+..+...-...-+|+||
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK  207 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVM--AYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITK  207 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHH--HHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEEC
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHH--HHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcC
Confidence            4789999999976311         11111111  112245788999987 222   22233444444333345589999


Q ss_pred             CCCCCch
Q 015657          164 LDGDSRG  170 (403)
Q Consensus       164 ~D~~~~~  170 (403)
                      +|.....
T Consensus       208 ~Dl~~~~  214 (315)
T 1jwy_B          208 LDLMDKG  214 (315)
T ss_dssp             TTSSCSS
T ss_pred             cccCCcc
Confidence            9975433

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.88  E-value=7.3e-05  Score=63.24  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             CCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      .+..+.|+||||.....   .........  ....++.+++|+|+...  .........+...-...-+|+||+|....
T Consensus        47 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           47 DRGRFLLVDTGGLWSGDKWEKKIQEKVDR--ALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH  123 (161)
T ss_dssp             TTEEEEEEECGGGCSSSSCCHHHHHHHHH--HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred             CCceEEEEECCCCCCccchHHHHHHHHHH--HHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence            35679999999976521   111111111  12245788999998542  11112222222222234589999997543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.87  E-value=6.1e-05  Score=67.89  Aligned_cols=74  Identities=18%  Similarity=0.094  Sum_probs=39.7

Q ss_pred             CCCcEEEEeCCCCccc------cHHhHHHHHHHhhh-cCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQI------DKAMMDELKDVKRV-LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~------d~~l~~el~~i~~~-~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .++.+.|+||||....      .......+...... -.++.+++|+|+...  .........+...-...-+|+||+|.
T Consensus        77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl  156 (223)
T 4dhe_A           77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK  156 (223)
T ss_dssp             TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred             CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence            4689999999995432      01111111222222 224668999998532  23333333333322234589999997


Q ss_pred             CCc
Q 015657          167 DSR  169 (403)
Q Consensus       167 ~~~  169 (403)
                      ...
T Consensus       157 ~~~  159 (223)
T 4dhe_A          157 LTR  159 (223)
T ss_dssp             SCH
T ss_pred             CCh
Confidence            643

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.86  E-value=9.2e-05  Score=72.42  Aligned_cols=146  Identities=12%  Similarity=0.177  Sum_probs=84.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC-CCCCCHHH--HHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQ--IAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~-~~~~~~~~--~~~~~l   90 (403)
                      +..+++++|.+|+||||++.++|..++..|.+|++++++.........+  ++...+++.... .......+  .+..+.
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rl--ls~~~~v~~~~l~~g~Ls~~e~~~l~~a~  122 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRA--LSDLTSINMHDLESGRLDDDQWENLAKCF  122 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHH--HHHHHCCCHHHHHHTCCCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH--HHHhhCCCHHHHhcCCCCHHHHHHHHHHH
Confidence            4478999999999999999999999999999999999985443332222  112222221110 01222322  234445


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec---ccH-----------HHHHHHHHHhhhcCCe
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MTG-----------QEAAALVTTFNIEIGI  156 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda---~~g-----------~~~~~~~~~~~~~~~i  156 (403)
                      ..+.  +..+.|.|+|+. .. ..+...+..+.... +..-++|||.   ...           .++.+.++.+....++
T Consensus       123 ~~l~--~~~l~I~d~~~~-si-~~i~~~ir~l~~~~-gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~v  197 (338)
T 4a1f_A          123 DHLS--QKKLFFYDKSYV-RI-EQIRLQLRKLKSQH-KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEI  197 (338)
T ss_dssp             HHHH--HSCEEEECCTTC-CH-HHHHHHHHHHHHHC-TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHh--cCCeEEeCCCCC-cH-HHHHHHHHHHHHhc-CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCC
Confidence            5553  356777787653 22 12223333333221 1456888886   111           2233444566677788


Q ss_pred             eEEEEccCCC
Q 015657          157 TGAILTKLDG  166 (403)
Q Consensus       157 ~GvIlNk~D~  166 (403)
                      ..++++.+..
T Consensus       198 pVi~lsQl~R  207 (338)
T 4a1f_A          198 PIIALVQLNR  207 (338)
T ss_dssp             CEEEEEECCG
T ss_pred             eEEEEEecCc
Confidence            8888888764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.85  E-value=0.00027  Score=67.14  Aligned_cols=41  Identities=24%  Similarity=0.232  Sum_probs=36.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~   53 (403)
                      .+..+++++|++|+||||++..|+..++.. |.+|++++.+.
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            345789999999999999999999999865 88999998875

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.85  E-value=2.4e-05  Score=79.30  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=38.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHH-HhhhcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVT-TFNIEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~-~~~~~~~i~GvIlNk~D  165 (403)
                      .++.+.|+||||...+...+..      ....+|.+++|+|+..+.         .....+. .....++..-+++||+|
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~------~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~D  166 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIG------GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD  166 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHh------hHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCC
Confidence            5678999999996533222221      122458999999996541         2222222 22223332358899999


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      ..
T Consensus       167 l~  168 (439)
T 3j2k_7          167 DP  168 (439)
T ss_pred             Cc
Confidence            74

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.85  E-value=6.1e-05  Score=74.58  Aligned_cols=111  Identities=19%  Similarity=0.238  Sum_probs=59.8

Q ss_pred             cccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHH
Q 015657            5 VSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ   84 (403)
Q Consensus         5 ~~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~   84 (403)
                      .+.++++....+.|+++|..++||||++..|.    ++|   .-++                    +.....        
T Consensus        11 ~~~~~~~~~~m~~i~iiG~~d~GKSTL~~~L~----~~g---iTi~--------------------~~~~~~--------   55 (370)
T 2elf_A           11 SSGLVPRGSHMANVAIIGTEKSGRTSLAANLG----KKG---TSSD--------------------ITMYNN--------   55 (370)
T ss_dssp             ---------CEEEEEEEESTTSSHHHHHHTTS----EEE---EESS--------------------SEEEEE--------
T ss_pred             ccccccccccCCEEEEECCCCCCHHHHHHHHH----hCC---EEEE--------------------eeEEEE--------
Confidence            34567766655689999999999999998876    111   1011                    111111        


Q ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEE
Q 015657           85 IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAIL  161 (403)
Q Consensus        85 ~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIl  161 (403)
                               ...++.+.|+||||...+-..+...      ...+|.+++|+| ..+  ......+... ...++..-+++
T Consensus        56 ---------~~~~~~i~iiDtPGh~~f~~~~~~~------~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvv  119 (370)
T 2elf_A           56 ---------DKEGRNMVFVDAHSYPKTLKSLITA------LNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIAL  119 (370)
T ss_dssp             ---------CSSSSEEEEEECTTTTTCHHHHHHH------HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ---------ecCCeEEEEEECCChHHHHHHHHHH------HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence                     1246789999999976543322222      234589999999 433  1122222111 22344435788


Q ss_pred             c-cCCC
Q 015657          162 T-KLDG  166 (403)
Q Consensus       162 N-k~D~  166 (403)
                      | |+|.
T Consensus       120 NNK~Dl  125 (370)
T 2elf_A          120 TRSDST  125 (370)
T ss_dssp             CCGGGS
T ss_pred             EeccCC
Confidence            8 9998

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.85  E-value=5.4e-05  Score=79.59  Aligned_cols=80  Identities=23%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCCCc--hh
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDSR--GG  171 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~~~--~~  171 (403)
                      .|.+.||||||...+.......    ..  .+|.+++|+|+..+   ++...........++ .-+|+||+|....  ..
T Consensus        70 ~~~l~liDTPGh~dF~~ev~~~----l~--~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~~~  142 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFSYEVSRS----LA--ACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADPER  142 (599)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHH----HH--HCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCHHH
T ss_pred             eEEEEEEECCCchHHHHHHHHH----HH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCcccccHHH
Confidence            5789999999986543332222    22  24889999999544   333332222333333 4588999997542  22


Q ss_pred             HHHHHHHHhCCC
Q 015657          172 AALSVKEVSGKP  183 (403)
Q Consensus       172 ~~~~~~~~~g~p  183 (403)
                      ....+.+.++.+
T Consensus       143 v~~ei~~~lg~~  154 (599)
T 3cb4_D          143 VAEEIEDIVGID  154 (599)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHHHhCCC
Confidence            334555555653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.85  E-value=6.9e-05  Score=74.77  Aligned_cols=126  Identities=18%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh-hHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~-~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ..|+++|..++||||++..|.....+.|...       +... ..+.. ......|+.+-....             .+.
T Consensus         4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~-------~~~~~~~d~~-~~e~~~giTi~~~~~-------------~~~   62 (397)
T 1d2e_A            4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAK-------FKKYEEIDNA-PEERARGITINAAHV-------------EYS   62 (397)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBC-------CCCHHHHHSC-CEEEETTEEEECEEE-------------EEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHhChhhhcCccc-------cchhhhhhcC-HHHHhcCcEEEeeeE-------------Eec
Confidence            4588999999999999999998777666321       0100 11111 011122322111000             001


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      ..++.+.|+||||...+    ...+  ......+|.+++|+|+..+  ......+.... ..++..-+++||+|...
T Consensus        63 ~~~~~~~iiDtpG~~~f----~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           63 TAARHYAHTDCPGHADY----VKNM--ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ  133 (397)
T ss_dssp             CSSCEEEEEECSSHHHH----HHHH--HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred             cCCeEEEEEECCChHHH----HHHH--HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence            24689999999996432    2211  1223356899999999653  12222222111 22332347899999753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.84  E-value=0.00037  Score=65.41  Aligned_cols=120  Identities=15%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +...|+++|.+|+||||+...|.      |.++..++ + +.+..          .....+..                 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~------~~~~~~~~-~-~~~~t----------~~~~~~~~-----------------   82 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSII------GERVVSIS-P-FQSEG----------PRPVMVSR-----------------   82 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH------TSCCSCCC-S-SSCCC----------SSCEEEEE-----------------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHh------CCCccccc-C-CCCcc----------eeeEEEEE-----------------
Confidence            35668899999999999998876      33321111 1 10000          00000100                 


Q ss_pred             HhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHh----hhcC-CeeEEEEc
Q 015657           94 KKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTF----NIEI-GITGAILT  162 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~----~~~~-~i~GvIlN  162 (403)
                      ...++.+.|+||||.....   ......+........++.+++|+|...   .......+..+    .... ...-+|+|
T Consensus        83 ~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~n  162 (270)
T 1h65_A           83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT  162 (270)
T ss_dssp             EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred             eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence            1246789999999975432   233333322222224578889966521   11112222222    2221 23458999


Q ss_pred             cCCCCC
Q 015657          163 KLDGDS  168 (403)
Q Consensus       163 k~D~~~  168 (403)
                      |+|...
T Consensus       163 K~Dl~~  168 (270)
T 1h65_A          163 HAQFSP  168 (270)
T ss_dssp             CCSCCC
T ss_pred             CcccCC
Confidence            999653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.84  E-value=0.0001  Score=77.53  Aligned_cols=143  Identities=18%  Similarity=0.246  Sum_probs=66.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH---hCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~---~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      +.+.|+++|..|+||||++..|...-.   ..+....+.|          .+ ......|+.+........        +
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D----------~~-~~ErerGITI~~~~~~~~--------~   65 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLD----------TL-DVERERGITVKMQAVRMF--------Y   65 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC----------------------------------CCCCSEEEE--------E
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccc----------cc-hhhhcccceeeeeEEEEE--------E
Confidence            357789999999999999999875421   1111111111          11 011112222110000000        0


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .......|.+.||||||...+.......    .  ..++.+++|+|+..+   ++...........++ .-+++||+|..
T Consensus        66 ~~~dg~~~~inliDTPGh~dF~~ev~r~----l--~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~  138 (600)
T 2ywe_A           66 KAKDGNTYKLHLIDTPGHVDFSYEVSRA----L--AACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLP  138 (600)
T ss_dssp             ECTTSCEEEEEEECCCCSGGGHHHHHHH----H--HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTST
T ss_pred             EcCCCCeEEEEEEECCCcHhHHHHHHHH----H--HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCcc
Confidence            0000134788999999986543322222    1  235899999999654   333222222233333 45889999975


Q ss_pred             Cch--hHHHHHHHHhCC
Q 015657          168 SRG--GAALSVKEVSGK  182 (403)
Q Consensus       168 ~~~--~~~~~~~~~~g~  182 (403)
                      ...  .....+.+.++.
T Consensus       139 ~a~~~~v~~el~~~lg~  155 (600)
T 2ywe_A          139 SADVDRVKKQIEEVLGL  155 (600)
T ss_dssp             TCCHHHHHHHHHHTSCC
T ss_pred             ccCHHHHHHHHHHhhCC
Confidence            322  223344444444

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.83  E-value=0.00031  Score=61.61  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=19.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +...|+++|.+||||||+...|.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            44568899999999999998876

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.83  E-value=8.6e-05  Score=65.17  Aligned_cols=84  Identities=15%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---HhhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.........    ..  .-.++.+++|+|+........   ...   .+...-...-+|+||+|.... 
T Consensus        64 ~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           64 TIKLQIWDTAGQERFRTITS----SY--YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             EEEEEEEEECCSGGGCTTHH----HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEEEEEECCCcHhhhhhHH----HH--HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence            46899999999643322111    11  123588999999865433222   111   221112234588999996432 


Q ss_pred             ---hhHHHHHHHHhCCCeEE
Q 015657          170 ---GGAALSVKEVSGKPIKL  186 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~f  186 (403)
                         ...+..+....+.|+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~  157 (196)
T 3tkl_A          138 VVDYTTAKEFADSLGIPFLE  157 (196)
T ss_dssp             CSCHHHHHHHHHHTTCCEEE
T ss_pred             ccCHHHHHHHHHHcCCcEEE
Confidence               23445566677777643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.83  E-value=4.8e-05  Score=66.68  Aligned_cols=84  Identities=17%  Similarity=0.072  Sum_probs=43.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HH---HHhhh-cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LV---TTFNI-EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~---~~~~~-~~~i~GvIlNk~D~~~  168 (403)
                      ..+++.|+||||...... +.   ...  ....+.+++|+|.........   ..   ..+.. .-...-+|+||+|...
T Consensus        67 ~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           67 ETCLLDILDTAGQEEYSA-MR---DQY--MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EEEEEEEEECCChHHHHH-HH---HHh--hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence            357899999999643211 10   111  123578899999865432222   11   22221 1123458999999653


Q ss_pred             ---chhHHHHHHHHhCCCeE
Q 015657          169 ---RGGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi~  185 (403)
                         ....+..+.+..+.|+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~  160 (190)
T 3con_A          141 RTVDTKQAHELAKSYGIPFI  160 (190)
T ss_dssp             CCSCHHHHHHHHHHHTCCEE
T ss_pred             ccCCHHHHHHHHHHcCCeEE
Confidence               23445556666777763

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.82  E-value=6.1e-05  Score=64.96  Aligned_cols=84  Identities=18%  Similarity=0.131  Sum_probs=47.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhcC--CeeEEEEccCCCCCc--
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIEI--GITGAILTKLDGDSR--  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~~--~i~GvIlNk~D~~~~--  169 (403)
                      .+.+.|+||||.........      ......+.+++|+|+.........   ...+....  ...-+|+||+|....  
T Consensus        57 ~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  130 (181)
T 3tw8_B           57 KVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKV  130 (181)
T ss_dssp             EEEEEEEEETTGGGCSSCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCC
T ss_pred             EEEEEEEcCCCchhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcc
Confidence            37899999999543211100      011235889999999665433332   22222221  234588999996432  


Q ss_pred             --hhHHHHHHHHhCCCeEE
Q 015657          170 --GGAALSVKEVSGKPIKL  186 (403)
Q Consensus       170 --~~~~~~~~~~~g~pi~f  186 (403)
                        ...+.......+.|+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~  149 (181)
T 3tw8_B          131 VETEDAYKFAGQMGIQLFE  149 (181)
T ss_dssp             SCHHHHHHHHHHHTCCEEE
T ss_pred             cCHHHHHHHHHHcCCeEEE
Confidence              23445566667777643

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.82  E-value=0.00014  Score=71.12  Aligned_cols=94  Identities=16%  Similarity=0.161  Sum_probs=57.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccCC-ChhhHHHHHHhhhccCC---------ceEeCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDVY-RPAAIDQLVILGEQVGV---------PVYTAG   77 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv---------~v~~~~   77 (403)
                      +..++.|+|.+|+||||++..++.....      .|.+|++++++.. .+..+.+   .....++         .+....
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~---~~~~~g~~~~~~l~~l~~~~~~  197 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD---IADRFNVDHDAVLDNVLYARAY  197 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH---HHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH---HHHHcCCCHHHHHhceeEeecC
Confidence            4588999999999999999999987554      5789999998853 3332222   2222222         222221


Q ss_pred             CCCCHHHHHHHHHHHHHh--CCCcEEEEeCCCCcc
Q 015657           78 TEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQ  110 (403)
Q Consensus        78 ~~~~~~~~~~~~l~~~~~--~~~D~VIIDtpg~l~  110 (403)
                      ......+.+..+...+..  .++++||||+...+.
T Consensus       198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~  232 (343)
T 1v5w_A          198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF  232 (343)
T ss_dssp             STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence            111222333333333444  678999999988664

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.82  E-value=0.00018  Score=63.73  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .+..-|+++|.+||||||+...|.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHH
Confidence            445678999999999999997775

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.81  E-value=0.00028  Score=61.67  Aligned_cols=81  Identities=16%  Similarity=0.090  Sum_probs=44.9

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhhcC-CeeEEEEccCCCCCc---h
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEI-GITGAILTKLDGDSR---G  170 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~~~-~i~GvIlNk~D~~~~---~  170 (403)
                      +.+.|+||||...... ..   ...  .-..+.+++|+|+........   ....+.... ...-+|+||+|....   .
T Consensus        93 ~~~~i~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~  166 (208)
T 3clv_A           93 IKFDIWDTAGQERYAS-IV---PLY--YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDI  166 (208)
T ss_dssp             EEEEEEECTTGGGCTT-TH---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCH
T ss_pred             eEEEEEECCCcHHHHH-HH---HHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCH
Confidence            7899999999643221 11   111  124588999999966533322   222222211 345589999993222   2


Q ss_pred             hHHHHHHHHhCCCe
Q 015657          171 GAALSVKEVSGKPI  184 (403)
Q Consensus       171 ~~~~~~~~~~g~pi  184 (403)
                      ..+.......+.|+
T Consensus       167 ~~~~~~~~~~~~~~  180 (208)
T 3clv_A          167 LEVQKYAQDNNLLF  180 (208)
T ss_dssp             HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCcE
Confidence            33444555566655

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.81  E-value=8.2e-05  Score=64.01  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=45.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||........    ...  .-..+.+++|+|+.........      +......-...-+|+||+|....
T Consensus        62 ~~~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  135 (179)
T 1z0f_A           62 QKIKLQIWDTAGQERFRAVT----RSY--YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ  135 (179)
T ss_dssp             EEEEEEEEECTTGGGTCHHH----HHH--HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             eEEEEEEEECCCChHhhhhH----HHH--hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence            35789999999964332211    111  1235889999999655332221      11121122234589999997432


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+.......+.++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (179)
T 1z0f_A          136 RDVTYEEAKQFAEENGLLF  154 (179)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccCHHHHHHHHHHcCCEE
Confidence                233445555566655

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.80  E-value=6.6e-05  Score=72.70  Aligned_cols=87  Identities=20%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCC-ChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVY-RPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~   89 (403)
                      -++.+.|++|+||||++..++..+++.  |.+|++||+.-. .+..       .+..|++   ++... ..+..++....
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-------a~~lGvd~d~llv~~-~~~~E~~~l~i  100 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-------LRSMGVDPERVIHTP-VQSLEQLRIDM  100 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-------HHHTTCCGGGEEEEE-CSBHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-------HHHhCCCHHHeEEEc-CCCHHHHHHHH
Confidence            368899999999999999999998876  889999998632 2221       2222322   11111 12223331233


Q ss_pred             HHHH---HhCCCcEEEEeCCCCcc
Q 015657           90 LEEA---KKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        90 l~~~---~~~~~D~VIIDtpg~l~  110 (403)
                      ++.+   +...+++||||+-..+.
T Consensus       101 ~~~l~~i~~~~~~lvVIDSI~aL~  124 (333)
T 3io5_A          101 VNQLDAIERGEKVVVFIDSLGNLA  124 (333)
T ss_dssp             HHHHHTCCTTCCEEEEEECSTTCB
T ss_pred             HHHHHHhhccCceEEEEecccccc
Confidence            3333   45679999999987764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.80  E-value=0.00033  Score=70.81  Aligned_cols=41  Identities=15%  Similarity=0.190  Sum_probs=36.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~   54 (403)
                      +..+++|+|.+|+||||++.++|...+. .|.+|+++++..-
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~  240 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP  240 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            3478999999999999999999999987 5899999998743

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.80  E-value=0.00017  Score=62.11  Aligned_cols=83  Identities=22%  Similarity=0.183  Sum_probs=46.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh------cCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI------EIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~------~~~i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||....... ..   ..  .-..+.+++|+|+........   ....+..      .....-+|.||+|..
T Consensus        55 ~~~~~~~Dt~G~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~  128 (178)
T 2hxs_A           55 NVTLQIWDIGGQTIGGKM-LD---KY--IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE  128 (178)
T ss_dssp             EEEEEEEECTTCCTTCTT-HH---HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred             EEEEEEEECCCCccccch-hh---HH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence            478999999997543211 11   11  124588999999965543221   1122211      333356899999964


Q ss_pred             Cc----hhHHHHHHHHhCCCeE
Q 015657          168 SR----GGAALSVKEVSGKPIK  185 (403)
Q Consensus       168 ~~----~~~~~~~~~~~g~pi~  185 (403)
                      ..    ...+..+....+.|+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~  150 (178)
T 2hxs_A          129 HMRTIKPEKHLRFCQENGFSSH  150 (178)
T ss_dssp             GGCSSCHHHHHHHHHHHTCEEE
T ss_pred             cccccCHHHHHHHHHHcCCcEE
Confidence            31    2344455566676653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.80  E-value=0.0001  Score=64.45  Aligned_cols=67  Identities=7%  Similarity=0.008  Sum_probs=37.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH------HHHHHHHHHhhh-----cCCeeEEEEccC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG------QEAAALVTTFNI-----EIGITGAILTKL  164 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g------~~~~~~~~~~~~-----~~~i~GvIlNk~  164 (403)
                      ..+.+.|+||||.........    .  ..-..+.+++|+|+...      .....+...+..     .-.+.-+|.||+
T Consensus        72 ~~~~~~i~Dt~G~~~~~~~~~----~--~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~  145 (198)
T 3t1o_A           72 FKTRFHLYTVPGQVFYNASRK----L--ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR  145 (198)
T ss_dssp             CEEEEEEEECCSCCSCSHHHH----H--HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECT
T ss_pred             CceEEEEEeCCChHHHHHHHH----H--HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEch
Confidence            457899999999654322111    1  12245889999999632      222222211111     112344889999


Q ss_pred             CCCC
Q 015657          165 DGDS  168 (403)
Q Consensus       165 D~~~  168 (403)
                      |...
T Consensus       146 Dl~~  149 (198)
T 3t1o_A          146 DLPD  149 (198)
T ss_dssp             TSTT
T ss_pred             hccc
Confidence            9654

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.78  E-value=6.7e-05  Score=72.72  Aligned_cols=92  Identities=17%  Similarity=0.310  Sum_probs=57.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC-CChhhHHHHHHhhhccCCc-------eEeCCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAIDQLVILGEQVGVP-------VYTAGTE   79 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~-~rp~~~~~l~~~~~~~gv~-------v~~~~~~   79 (403)
                      +..++.++|.+|+||||++..++...+..      |.+|++++++. +++..+.+   .....+++       ++... .
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~---~~~~~g~~~~~~~~~l~~~~-~  181 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN---MAKALGLDIDNVMNNIYYIR-A  181 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH---HHHHTTCCHHHHHHTEEEEE-C
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH---HHHHhCCCHHHHhccEEEEe-C
Confidence            35789999999999999999999887654      78999999885 34443222   22223322       11111 1


Q ss_pred             CCHH---HHHHHHHHHHHh-CCCcEEEEeCCCCc
Q 015657           80 VKPS---QIAKQGLEEAKK-KNVDVVIVDTAGRL  109 (403)
Q Consensus        80 ~~~~---~~~~~~l~~~~~-~~~D~VIIDtpg~l  109 (403)
                      ....   +.+..+...+.. .++++||||+...+
T Consensus       182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l  215 (324)
T 2z43_A          182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH  215 (324)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence            1222   223333334434 67899999998765

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.78  E-value=0.00032  Score=71.13  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=36.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~   54 (403)
                      +..+++++|.+|+||||++.+++..++. .|.+|++++.+..
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS  243 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4578999999999999999999999986 6899999998754

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.78  E-value=0.00031  Score=72.08  Aligned_cols=41  Identities=20%  Similarity=0.101  Sum_probs=36.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~   54 (403)
                      +..+++|+|.+|+||||++.++|..++.+ |.+|++++++..
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s  282 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES  282 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence            45789999999999999999999999987 999999998854

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.78  E-value=6.9e-05  Score=66.83  Aligned_cols=83  Identities=18%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh---hcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---IEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~---~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.........    ..  .-.++.+++|+|+.......   .....+.   ..-...-+|+||+|...+ 
T Consensus        68 ~~~~~l~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  141 (213)
T 3cph_A           68 KVKLQLWDTAGQERFRTITT----AY--YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV  141 (213)
T ss_dssp             EEEEEEECCTTGGGGTCCCH----HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC
T ss_pred             EEEEEEEeCCCcHHHHHHHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence            37899999999643321111    11  12358899999986543322   1112221   112234589999997432 


Q ss_pred             --hhHHHHHHHHhCCCeE
Q 015657          170 --GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 --~~~~~~~~~~~g~pi~  185 (403)
                        ...+..+....+.|+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~  159 (213)
T 3cph_A          142 VTADQGEALAKELGIPFI  159 (213)
T ss_dssp             SCHHHHHHHHHHHTCCEE
T ss_pred             cCHHHHHHHHHHcCCEEE
Confidence              2334455566777763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.77  E-value=5.9e-05  Score=76.60  Aligned_cols=118  Identities=19%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...|+++|.+||||||+...|.      |.+..++...   |+.         .........                 .
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~~---~g~---------t~~~~~~~~-----------------~   67 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIA------GERISIVEDT---PGV---------TRDRIYSSA-----------------E   67 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHE------EEEEC-----------------------CEEEEC-----------------T
T ss_pred             CCEEEEECCCCCcHHHHHHHHh------CCCCcccCCC---CCc---------ceeEEEEEE-----------------E
Confidence            3568999999999999998886      4444333211   111         000001111                 1


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHh--hhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~--~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      +.+..+.|+||||....+.....++....  ..-.++.+++|+|+..+  ......+..+...-...-+|+||+|..
T Consensus        68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~  144 (456)
T 4dcu_A           68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT  144 (456)
T ss_dssp             TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred             ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence            25678999999996532221122221111  11235899999998542  222233333333223345889999964

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.76  E-value=6.7e-05  Score=69.15  Aligned_cols=101  Identities=10%  Similarity=0.081  Sum_probs=59.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+..+++++|..|+||||++..++..+..+|.+|+++..-....+ ..   ......|+...... .....    +.++.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~-~~---~i~srlG~~~~~~~-~~~~~----~i~~~   80 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRS-IR---NIQSRTGTSLPSVE-VESAP----EILNY   80 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGG-CS---SCCCCCCCSSCCEE-ESSTH----HHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchH-HH---HHHHhcCCCccccc-cCCHH----HHHHH
Confidence            456899999999999999999999999999999999843211111 11   12233343211110 01112    22333


Q ss_pred             HH----hCCCcEEEEeCCCCccccHHhHHHHHHHhh
Q 015657           93 AK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKR  124 (403)
Q Consensus        93 ~~----~~~~D~VIIDtpg~l~~d~~l~~el~~i~~  124 (403)
                      +.    ...+|+||||-.-.+.  ......+..+..
T Consensus        81 i~~~~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~~  114 (223)
T 2b8t_A           81 IMSNSFNDETKVIGIDEVQFFD--DRICEVANILAE  114 (223)
T ss_dssp             HHSTTSCTTCCEEEECSGGGSC--THHHHHHHHHHH
T ss_pred             HHHHhhCCCCCEEEEecCccCc--HHHHHHHHHHHh
Confidence            32    2459999999987654  234444444433

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.75  E-value=0.00016  Score=65.95  Aligned_cols=91  Identities=20%  Similarity=0.221  Sum_probs=54.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccCC-ChhhHHHHHHhhhccCC---------ceEeCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDVY-RPAAIDQLVILGEQVGV---------PVYTAG   77 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv---------~v~~~~   77 (403)
                      +..+++++|++|+||||++..|+.....      .+.+|++++++.. .+....+.   ....++         .++.. 
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~-   98 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV---AERYGLSGSDVLDNVAYARA-   98 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHH---HHHTTCCHHHHHHTEEEEEC-
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHH---HHHcCCCHHHHhhCeEEEec-
Confidence            3578999999999999999999986433      3678999988753 22221111   112222         12211 


Q ss_pred             CCCCHHH---HHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657           78 TEVKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        78 ~~~~~~~---~~~~~l~~~~~~~~D~VIIDtpg~l~  110 (403)
                        ....+   .+......+...+++++|||.+....
T Consensus        99 --~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~  132 (243)
T 1n0w_A           99 --FNTDHQTQLLYQASAMMVESRYALLIVDSATALY  132 (243)
T ss_dssp             --CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred             --CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence              12222   22233344444679999999988654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.75  E-value=6e-05  Score=66.73  Aligned_cols=40  Identities=28%  Similarity=0.255  Sum_probs=36.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ..+++++|.+||||||++..|+..+...|++|.++..|+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            5688999999999999999999999999999999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.75  E-value=5.3e-05  Score=64.51  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhcCCeeEEEEccCCCCC--
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIEIGITGAILTKLDGDS--  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~~~i~GvIlNk~D~~~--  168 (403)
                      .+.+.|+||||....... ..   ..  ....+.+++|+|+........   ....+   ....+ .-+|+||+|...  
T Consensus        53 ~~~~~l~Dt~G~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~  125 (168)
T 1z2a_A           53 DVRLMLWDTAGQEEFDAI-TK---AY--YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDS  125 (168)
T ss_dssp             EEEEEEECCTTGGGTTCC-CH---HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGC
T ss_pred             EEEEEEEcCCCcHhHHHH-HH---HH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccc
Confidence            578999999996432111 11   11  123588899999865432222   11222   12333 448999999642  


Q ss_pred             --chhHHHHHHHHhCCCeE
Q 015657          169 --RGGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 --~~~~~~~~~~~~g~pi~  185 (403)
                        ....+..+....+.|+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~  144 (168)
T 1z2a_A          126 CIKNEEAEGLAKRLKLRFY  144 (168)
T ss_dssp             SSCHHHHHHHHHHHTCEEE
T ss_pred             ccCHHHHHHHHHHcCCeEE
Confidence              23344556666777663

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.74  E-value=0.00032  Score=59.34  Aligned_cols=82  Identities=17%  Similarity=0.086  Sum_probs=43.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhh--cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNI--EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~--~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||...... +.   .....  ..+.+++|+|..........   ...   ...  ..+ .-+|+||+|..
T Consensus        50 ~~~~~~l~D~~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~  122 (168)
T 1u8z_A           50 EEVQIDILDTAGQEDYAA-IR---DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE  122 (168)
T ss_dssp             EEEEEEEEECCC---CHH-HH---HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred             EEEEEEEEECCCcchhHH-HH---HHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence            357899999999653211 11   11111  24889999998654332221   111   211  233 45899999964


Q ss_pred             Cc----hhHHHHHHHHhCCCe
Q 015657          168 SR----GGAALSVKEVSGKPI  184 (403)
Q Consensus       168 ~~----~~~~~~~~~~~g~pi  184 (403)
                      ..    ...+.......+.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~  143 (168)
T 1u8z_A          123 DKRQVSVEEAKNRADQWNVNY  143 (168)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEE
T ss_pred             ccCccCHHHHHHHHHHcCCeE
Confidence            21    233444555566655

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.00014  Score=76.62  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH----------HHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG----------QEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g----------~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                      .++.++|+||||...+.    ..  .+.....++.+++|+|+..+          +............+...-+|+||+|
T Consensus       243 ~~~~~~iiDTPG~e~f~----~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiD  316 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFV----PN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD  316 (611)
T ss_dssp             SSCEEEEEECCSSSCHH----HH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTT
T ss_pred             CCceEEEEECCCCcccH----HH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccc
Confidence            46789999999975421    11  12223346899999999754          2222111112223333457899999


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      ...
T Consensus       317 l~~  319 (611)
T 3izq_1          317 NVD  319 (611)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.74  E-value=9.8e-05  Score=63.83  Aligned_cols=82  Identities=16%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhhc---CCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~~---~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||........    ...  .-..+.+++|+|+......   ......+...   -...-+|+||+|.... 
T Consensus        60 ~~~~~i~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~  133 (181)
T 2efe_B           60 TVKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR  133 (181)
T ss_dssp             EEEEEEEECCCSGGGGGGT----HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEEEEEeCCCChhhhhhh----HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence            5789999999964322111    111  1235889999998655332   2222222221   2234588999997432 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~  151 (181)
T 2efe_B          134 KVTAEDAQTYAQENGLFF  151 (181)
T ss_dssp             CSCHHHHHHHHHHTTCEE
T ss_pred             cCCHHHHHHHHHHcCCEE
Confidence               233444555566665

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.74  E-value=0.00031  Score=61.24  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ..|+++|.+||||||+...|.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~   44 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALF   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999997775

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.74  E-value=3.7e-05  Score=67.90  Aligned_cols=42  Identities=38%  Similarity=0.640  Sum_probs=37.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ..++.+|+++|.+||||||++..|+..+...|++|.+++.|.
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~   51 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW   51 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence            346789999999999999999999999999999999998773

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=97.73  E-value=0.00022  Score=69.96  Aligned_cols=140  Identities=20%  Similarity=0.238  Sum_probs=85.8

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.+.++++|. ..+||||++..|...+.++|+++..+..-     ..-.  ..+...+++.-..... .-.......+..
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg-----qtg~--li~~~~gv~~D~~~~~-~~ag~~e~~i~~  239 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG-----QTGI--LIGADAGYVIDAVPAD-FVSGVVEKAVLK  239 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS-----HHHH--HTTCSEECCGGGSBGG-GHHHHHHHHHHH
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC-----ceee--eeccCCCCCCCceecc-hhhHHHHhhHHH
Confidence            4577889999 89999999999999999999999886633     1111  1112222221111000 011122222333


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec--------------ccHHHHHHHHHHhhhcCCeeE
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--------------MTGQEAAALVTTFNIEIGITG  158 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda--------------~~g~~~~~~~~~~~~~~~i~G  158 (403)
                      +..+++|++||+++|++........ ...+.....|+.++++-++              ...++.......+. ..++.|
T Consensus       240 ~~~~~~D~ivVEGqGgl~~P~~~~v-~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l~-~~~V~g  317 (350)
T 2g0t_A          240 LEKTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLS-NAKVIG  317 (350)
T ss_dssp             HHHTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHSS-SCEEEE
T ss_pred             hhhcCCCEEEEccCeeccccCchHH-HHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHhc-CCcEEE
Confidence            3247899999999998865332221 2445566678888887643              12345555555555 677899


Q ss_pred             EE-Ecc
Q 015657          159 AI-LTK  163 (403)
Q Consensus       159 vI-lNk  163 (403)
                      ++ +|-
T Consensus       318 i~~lN~  323 (350)
T 2g0t_A          318 GVSLNG  323 (350)
T ss_dssp             EECSSC
T ss_pred             EEEcCc
Confidence            99 987

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.73  E-value=0.00011  Score=63.78  Aligned_cols=81  Identities=19%  Similarity=0.087  Sum_probs=44.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---Hhhh--cCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNI--EIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~--~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.|+||||...... +.   .....  ..+.+++|+|.........   ...   ....  ..+ .-+|+||+|...
T Consensus        65 ~~~~~l~Dt~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~  137 (187)
T 2a9k_A           65 EVQIDILDTAGQEDYAA-IR---DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED  137 (187)
T ss_dssp             EEEEEEEECCCTTCCHH-HH---HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGG
T ss_pred             EEEEEEEECCCCcccHH-HH---HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence            46899999999654321 11   11111  2488999999865433222   111   2222  233 448999999642


Q ss_pred             ----chhHHHHHHHHhCCCe
Q 015657          169 ----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ----~~~~~~~~~~~~g~pi  184 (403)
                          ....+.......+.|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~  157 (187)
T 2a9k_A          138 KRQVSVEEAKNRAEQWNVNY  157 (187)
T ss_dssp             GCCSCHHHHHHHHHHTTCEE
T ss_pred             cCccCHHHHHHHHHHcCCeE
Confidence                1233444555566655

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.73  E-value=0.00011  Score=63.38  Aligned_cols=83  Identities=16%  Similarity=0.136  Sum_probs=44.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.......    ...  .....+.+++|+|+........   ....+   ...-...-+|+||+|.... 
T Consensus        59 ~~~~~~~Dt~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  132 (180)
T 2g6b_A           59 KVKLQMWDTAGQERFRSV----THA--YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER  132 (180)
T ss_dssp             EEEEEEEECCCC------------C--CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred             EEEEEEEeCCCcHHHHHH----HHH--HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence            468999999996432110    011  1123588999999966543222   12222   1122234589999996532 


Q ss_pred             ---hhHHHHHHHHhCCCeE
Q 015657          170 ---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~  185 (403)
                         ...+..+....+.|+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~  151 (180)
T 2g6b_A          133 VVKREDGEKLAKEYGLPFM  151 (180)
T ss_dssp             CSCHHHHHHHHHHHTCCEE
T ss_pred             ccCHHHHHHHHHHcCCeEE
Confidence               2334555566677663

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.72  E-value=9.1e-05  Score=75.39  Aligned_cols=66  Identities=11%  Similarity=0.206  Sum_probs=38.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHHHh-hhcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTF-NIEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~~~-~~~~~i~GvIlNk~D  165 (403)
                      .++.+.|+||||.-.+.    ..+  +.....+|.+++|+|+..+.         .....+... ...++..-+++||+|
T Consensus        83 ~~~~~~iiDtPGh~~f~----~~~--~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D  156 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFI----KNM--ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD  156 (458)
T ss_dssp             SSEEEEEEECCCCTTHH----HHH--HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred             CCceEEEEECCCcHHHH----HHH--HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence            46789999999964322    211  12233568999999997552         222222211 122332457899999


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      ..
T Consensus       157 l~  158 (458)
T 1f60_A          157 SV  158 (458)
T ss_dssp             GG
T ss_pred             cc
Confidence            75

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.72  E-value=0.00017  Score=64.70  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +...|+++|.+|+||||+...|.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~   33 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLT   33 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34558899999999999997776

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.71  E-value=0.00013  Score=66.13  Aligned_cols=39  Identities=13%  Similarity=0.101  Sum_probs=35.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+..++++|++|+||||++..++..+...|.++..++++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~   89 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG   89 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            457789999999999999999999999889999998876

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.71  E-value=0.00016  Score=63.68  Aligned_cols=82  Identities=17%  Similarity=0.091  Sum_probs=45.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCC--
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDS--  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~--  168 (403)
                      .+.+.|+||||.........    ..  .-..+.+++|+|+........   ....+..   .-...-+|+||+|...  
T Consensus        69 ~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~  142 (191)
T 2a5j_A           69 QIKLQIWDTAGQESFRSITR----SY--YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR  142 (191)
T ss_dssp             EEEEEEECCTTGGGTSCCCH----HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEEEEEEECCCchhhhhhHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc
Confidence            47899999999643221111    11  123588999999865533322   2222211   1223458899999743  


Q ss_pred             --chhHHHHHHHHhCCCe
Q 015657          169 --RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 --~~~~~~~~~~~~g~pi  184 (403)
                        ....+.......+.++
T Consensus       143 ~v~~~~~~~~~~~~~~~~  160 (191)
T 2a5j_A          143 DVKREEGEAFAREHGLIF  160 (191)
T ss_dssp             CSCHHHHHHHHHHHTCEE
T ss_pred             ccCHHHHHHHHHHcCCEE
Confidence              1233445555667665

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.71  E-value=6e-05  Score=67.13  Aligned_cols=83  Identities=14%  Similarity=0.154  Sum_probs=45.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.........      ...-..+.+++|+|+.........   ...+.   ..-...-+|+||+|.... 
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  129 (206)
T 2bcg_Y           56 TVKLQIWDTAGQERFRTITS------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR  129 (206)
T ss_dssp             EEEEEEECCTTTTTTTCCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEEEEEeCCChHHHHHHHH------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence            46899999999643211100      111235889999999655433222   22221   122334589999997532 


Q ss_pred             ---hhHHHHHHHHhCCCeE
Q 015657          170 ---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~  185 (403)
                         ...+..+....+.|+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~  148 (206)
T 2bcg_Y          130 VVEYDVAKEFADANKMPFL  148 (206)
T ss_dssp             CSCHHHHHHHHHHTTCCEE
T ss_pred             ccCHHHHHHHHHHcCCeEE
Confidence               2334445556676663

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.71  E-value=0.00017  Score=73.89  Aligned_cols=67  Identities=16%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHHHh-hhcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTF-NIEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~~~-~~~~~i~GvIlNk~D  165 (403)
                      .++.+.|+||||.-.+...+..      ....+|.+++|+|+..+.         .....+... .......-+++||+|
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~------~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~D  182 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIM------GISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD  182 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHH------HHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred             CCceEEEEECCCcHHHHHHHHH------hhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcC
Confidence            5689999999997543222221      223468999999996541         122222111 122333457899999


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      ...
T Consensus       183 l~~  185 (483)
T 3p26_A          183 NVD  185 (483)
T ss_dssp             GGT
T ss_pred             ccc
Confidence            654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.70  E-value=0.00015  Score=63.21  Aligned_cols=83  Identities=18%  Similarity=0.133  Sum_probs=46.7

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh----cCCeeEEEEccCCCCC-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI----EIGITGAILTKLDGDS-  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~----~~~i~GvIlNk~D~~~-  168 (403)
                      .+.+.|+||||.......    ...  ..-.++.+++|+|+........   ....+..    .-...-+|+||+|... 
T Consensus        69 ~~~~~l~Dt~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  142 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSL----TTA--FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ  142 (195)
T ss_dssp             EEEEEEEEECCSGGGHHH----HHH--TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred             EEEEEEEeCCCcHHHHHH----HHH--HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            578999999997432111    111  1224588999999865533322   2222221    1223458999999643 


Q ss_pred             ---chhHHHHHHHHhCCCeE
Q 015657          169 ---RGGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi~  185 (403)
                         ....+..+....+.|+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A          143 RAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             CCSCHHHHHHHHHHHTCCEE
T ss_pred             cccCHHHHHHHHHHcCCCEE
Confidence               12344556666777763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.69  E-value=0.00018  Score=68.03  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ..|+++|.+||||||+...|.
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~   47 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            348899999999999998886

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.69  E-value=3.6e-05  Score=77.77  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=21.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANY   38 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~   38 (403)
                      ++...|+++|..|+||||++..|...
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            34567899999999999999988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.68  E-value=0.00038  Score=59.29  Aligned_cols=84  Identities=8%  Similarity=-0.027  Sum_probs=43.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhc----CCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE----IGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~----~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||.......+...   .  .-.++.+++|+|..........   ...+...    -.+.-+|.||+|...
T Consensus        49 ~~~~~~i~D~~g~~~~~~~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (169)
T 3q85_A           49 EEVTLIVYDIWEQGDAGGWLQDH---C--LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR  123 (169)
T ss_dssp             EEEEEEEECCCCC--------CH---H--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred             eEEEEEEEECCCccccchhhhhh---h--hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence            35788999999975432111110   0  1124888999998654333222   2222111    123448899999642


Q ss_pred             ----chhHHHHHHHHhCCCe
Q 015657          169 ----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ----~~~~~~~~~~~~g~pi  184 (403)
                          ....+.......+.|+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~  143 (169)
T 3q85_A          124 SREVSLEEGRHLAGTLSCKH  143 (169)
T ss_dssp             GCCSCHHHHHHHHHHTTCEE
T ss_pred             cccCCHHHHHHHHHHcCCcE
Confidence                2233445556666655

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.68  E-value=0.00023  Score=63.42  Aligned_cols=82  Identities=17%  Similarity=0.061  Sum_probs=45.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||...... +   ....  .-.++.+++|+|.........   ....+..   .-...-+|.||+|.... 
T Consensus        77 ~~~l~i~Dt~G~~~~~~-~---~~~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~  150 (201)
T 2hup_A           77 RVKLQIWDTAGQERFRT-I---TQSY--YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR  150 (201)
T ss_dssp             EEEEEEECCTTCGGGHH-H---HHHH--HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEEEEEEECCCcHhHHH-H---HHHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc
Confidence            47899999999643211 1   1111  124588999999865543222   2222221   11234588999997531 


Q ss_pred             ---hhHHHHHHHHhCC-Ce
Q 015657          170 ---GGAALSVKEVSGK-PI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~-pi  184 (403)
                         ...+..+....+. ++
T Consensus       151 ~v~~~~~~~~~~~~~~~~~  169 (201)
T 2hup_A          151 EVSLAEAQSLAEHYDILCA  169 (201)
T ss_dssp             CSCHHHHHHHHHHTTCSEE
T ss_pred             ccCHHHHHHHHHHcCCCEE
Confidence               2334455556665 44

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.68  E-value=0.00024  Score=62.77  Aligned_cols=82  Identities=18%  Similarity=0.078  Sum_probs=45.2

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHH---hhh--cCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTT---FNI--EIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~---~~~--~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.|+||||...... +.   .....  ..+.+++|+|..........   ...   +..  ..+ .-+|+||+|...
T Consensus        61 ~~~~~l~Dt~G~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~  133 (206)
T 2bov_A           61 EVQIDILDTAGQEDYAA-IR---DNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED  133 (206)
T ss_dssp             EEEEEEEECCCTTCCHH-HH---HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGG
T ss_pred             EEEEEEEcCCChhhhHH-HH---HHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccc
Confidence            46899999999654321 11   11111  24888999998654332221   112   211  223 458999999643


Q ss_pred             c----hhHHHHHHHHhCCCeE
Q 015657          169 R----GGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi~  185 (403)
                      .    ...+.......+.|+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~  154 (206)
T 2bov_A          134 KRQVSVEEAKNRAEQWNVNYV  154 (206)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEE
T ss_pred             cccccHHHHHHHHHHhCCeEE
Confidence            2    2334455556676653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.67  E-value=4.5e-05  Score=66.86  Aligned_cols=83  Identities=16%  Similarity=0.150  Sum_probs=45.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhhc----CCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE----IGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~~----~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||.........    ..  .-.++.+++|+|+........   ....+...    -...-+|+||+|...
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~  135 (195)
T 1x3s_A           62 NKAKLAIWDTAGQERFRTLTP----SY--YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN  135 (195)
T ss_dssp             EEEEEEEEEECSSGGGCCSHH----HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred             eEEEEEEEeCCCchhhhhhhH----HH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence            357899999999653321111    11  123588999999965543322   22223221    123458999999743


Q ss_pred             c---hhHHHHHHHHhCCCe
Q 015657          169 R---GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~---~~~~~~~~~~~g~pi  184 (403)
                      .   ...+.......+.++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (195)
T 1x3s_A          136 REVDRNEGLKFARKHSMLF  154 (195)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccCHHHHHHHHHHcCCEE
Confidence            2   233444555556554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.66  E-value=0.00056  Score=64.45  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=32.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC----------CCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----------GKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~----------G~kVllVd~D~   53 (403)
                      +..+++|+|++|+||||++..++..++..          +.+|++++...
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~   78 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED   78 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence            45789999999999999999999877652          35788888764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.66  E-value=5.6e-05  Score=65.24  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=38.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      .+..+.|+||||.........      .....++.+++|+|+...  ......+..+...-...-+|+||+|...
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~  121 (178)
T 2lkc_A           53 NDKKITFLDTPGHEAFTTMRA------RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE  121 (178)
T ss_dssp             TTEEEEESCCCSSSSSSCSCC------SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred             CCceEEEEECCCCHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence            356789999999654321110      111235778999997442  3333333333322223458999999754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.66  E-value=0.00019  Score=61.08  Aligned_cols=83  Identities=13%  Similarity=0.033  Sum_probs=44.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh---hcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN---IEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~---~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||...... ..   ...  ....+.+++|+|+........   ....+.   ....+.-+|.||+|....
T Consensus        53 ~~~~~~~~Dt~G~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~  126 (170)
T 1z0j_A           53 ELHKFLIWDTAGLERFRA-LA---PMY--YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV  126 (170)
T ss_dssp             EEEEEEEEEECCSGGGGG-GT---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred             eEEEEEEEcCCCchhhhc-cc---Hhh--CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence            357899999999743211 11   111  123588899999865533222   222221   222234477899996432


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+.......+.|+
T Consensus       127 ~~v~~~~~~~~~~~~~~~~  145 (170)
T 1z0j_A          127 REVMERDAKDYADSIHAIF  145 (170)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccCHHHHHHHHHHcCCEE
Confidence                233444555566555

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.66  E-value=0.00037  Score=62.81  Aligned_cols=90  Identities=20%  Similarity=0.139  Sum_probs=55.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC--hhhHHHHHHhhhccCCceEeCCCCC---CH-----H
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEV---KP-----S   83 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r--p~~~~~l~~~~~~~gv~v~~~~~~~---~~-----~   83 (403)
                      +..+++++|.| .||||.|..+|.....+|++|+++....-.  .+-..-+..    .++.+...+...   .+     .
T Consensus        28 ~g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~  102 (196)
T 1g5t_A           28 RGIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADT  102 (196)
T ss_dssp             CCCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHH
T ss_pred             CceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHH
Confidence            45666666665 999999999999999999999999766431  222222222    234444433211   11     1


Q ss_pred             HHHHHHHHHH----HhCCCcEEEEeCCCC
Q 015657           84 QIAKQGLEEA----KKKNVDVVIVDTAGR  108 (403)
Q Consensus        84 ~~~~~~l~~~----~~~~~D~VIIDtpg~  108 (403)
                      ..+..++..+    ....||+||+|-.+.
T Consensus       103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~  131 (196)
T 1g5t_A          103 AACMAVWQHGKRMLADPLLDMVVLDELTY  131 (196)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence            2333444433    346799999998743

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.65  E-value=0.00078  Score=61.47  Aligned_cols=41  Identities=29%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~   54 (403)
                      +..+++++|.+|+||||+|.++|...+ +.|.+|++++.+..
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~   70 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER   70 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence            357899999999999999999987654 55889999998744

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.65  E-value=0.00031  Score=60.94  Aligned_cols=83  Identities=18%  Similarity=0.049  Sum_probs=44.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhc-CCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIE-IGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~-~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||.........    ....  .++.+++|+|.........   ....+   ... -...-+|+||+|....
T Consensus        51 ~~~~~i~Dt~G~~~~~~~~~----~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~  124 (189)
T 4dsu_A           51 TCLLDILDTAGQEEYSAMRD----QYMR--TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR  124 (189)
T ss_dssp             EEEEEEEECCCC---CTTHH----HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred             EEEEEEEECCCcHHHHHHHH----HHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence            46688899999654322111    1111  2488899999865433222   22222   111 1234588999996532


Q ss_pred             ---hhHHHHHHHHhCCCeE
Q 015657          170 ---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~  185 (403)
                         ...+..+....+.|+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~  143 (189)
T 4dsu_A          125 TVDTKQAQDLARSYGIPFI  143 (189)
T ss_dssp             SSCHHHHHHHHHHHTCCEE
T ss_pred             ccCHHHHHHHHHHcCCeEE
Confidence               3445566677787763

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.65  E-value=0.00055  Score=68.98  Aligned_cols=67  Identities=19%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||...+...+..      ....++.+++|+|+..+  ......+... ...++..-+++||+|...
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~------~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~  171 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMAT------GASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG  171 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHH------HHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred             CCceEEEEECCChHHHHHHHHH------HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence            4678999999996543222221      22356899999999543  1222211111 122333457899999754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.64  E-value=0.00011  Score=74.26  Aligned_cols=117  Identities=19%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.+||||||+...|+      |.+..++...   |+.         .........                 .+.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~------~~~~~~v~~~---~g~---------T~d~~~~~~-----------------~~~   49 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIA------GERISIVEDT---PGV---------TRDRIYSSA-----------------EWL   49 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHE------EEECC-----------------------CEEEEC-----------------TTC
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCCceeecCC---CCC---------ccceEEEEE-----------------EEC
Confidence            58899999999999998876      4343222110   111         000011111                 124


Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHH--hhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i--~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      +.++.|+||||....+..+...+...  ...-.++.+++|+|+..+  ......+..+...-...-+|+||+|...
T Consensus        50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred             CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence            67899999999753222111111111  111235889999998543  1112222323322234558999999753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.64  E-value=0.00023  Score=63.06  Aligned_cols=83  Identities=16%  Similarity=0.125  Sum_probs=46.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||...... +   ....  .-..+.+++|+|+........   ....+..   .-...-+|+||+|....
T Consensus        55 ~~~~~~l~Dt~G~~~~~~-~---~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (203)
T 1zbd_A           55 KRIKLQIWDTAGLERYRT-I---TTAY--YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE  128 (203)
T ss_dssp             EEEEEEEEEECCSGGGHH-H---HHTT--GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred             eEEEEEEEECCCchhhcc-h---HHHh--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence            357899999999743211 1   1111  123588999999965543222   2222221   12334589999996432


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+..+....+.++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~  147 (203)
T 1zbd_A          129 RVVSSERGRQLADHLGFEF  147 (203)
T ss_dssp             CCSCHHHHHHHHHHHTCEE
T ss_pred             cccCHHHHHHHHHHCCCeE
Confidence                234455666677765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.64  E-value=0.00066  Score=70.17  Aligned_cols=41  Identities=37%  Similarity=0.507  Sum_probs=37.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ..+.+|+++|.+||||||++..|+.+|...+.++.+++.|.
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~   73 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE   73 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence            45689999999999999999999999998899999999884

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.63  E-value=0.00016  Score=61.57  Aligned_cols=82  Identities=15%  Similarity=0.076  Sum_probs=43.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HH---HHHhh---hcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---AL---VTTFN---IEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~---~~~~~---~~~~i~GvIlNk~D~  166 (403)
                      ..+.+.|+||||.........    ...  ...+.+++|+|+.......   ..   +..+.   ...+ .-+|+||+|.
T Consensus        49 ~~~~~~~~Dt~G~~~~~~~~~----~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl  121 (172)
T 2erx_A           49 SICTLQITDTTGSHQFPAMQR----LSI--SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDE  121 (172)
T ss_dssp             EEEEEEEEECCSCSSCHHHHH----HHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred             EEEEEEEEECCCchhhHHHHH----Hhc--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcccc
Confidence            356899999999754322111    111  1248899999986543221   11   22221   1233 4589999995


Q ss_pred             CCc----hhHHHHHHHHhCCCe
Q 015657          167 DSR----GGAALSVKEVSGKPI  184 (403)
Q Consensus       167 ~~~----~~~~~~~~~~~g~pi  184 (403)
                      ...    ...........+.|+
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~  143 (172)
T 2erx_A          122 SPSREVQSSEAEALARTWKCAF  143 (172)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEE
T ss_pred             ccccccCHHHHHHHHHHhCCeE
Confidence            421    123344455566655

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.63  E-value=0.00015  Score=63.53  Aligned_cols=83  Identities=18%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||.-......    .  ...-..+.+++|+|+........   ....+..   .-...-+|+||+|....
T Consensus        69 ~~~~~~l~Dt~G~~~~~~~~----~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  142 (189)
T 2gf9_A           69 KRIKLQIWDTAGQERYRTIT----T--AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE  142 (189)
T ss_dssp             EEEEEEEEECCSCCSSCCSG----G--GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             eEEEEEEEeCCCcHHHhhhH----H--HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence            35789999999964332111    0  11123588899999865433222   2222221   12334589999996432


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+..+.+..+.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~  161 (189)
T 2gf9_A          143 RVVPAEDGRRLADDLGFEF  161 (189)
T ss_dssp             CCSCHHHHHHHHHHHTCEE
T ss_pred             cCCCHHHHHHHHHHcCCeE
Confidence                234455666677665

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.62  E-value=0.00031  Score=62.09  Aligned_cols=82  Identities=16%  Similarity=0.034  Sum_probs=43.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh------cCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI------EIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~------~~~i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||....     ..+ .....-..+.+++|+|+........   ....+..      .-...-+|+||+|..
T Consensus        72 ~~~~~l~Dt~G~~~~-----~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  145 (208)
T 2yc2_C           72 SVELFLLDTAGSDLY-----KEQ-ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP  145 (208)
T ss_dssp             EEEEEEEETTTTHHH-----HHH-HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred             EEEEEEEECCCcHHH-----HHH-HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence            578999999997421     111 0111124588999999966543222   2222221      122345899999965


Q ss_pred             C-c----hhHHHHHHHHhCCCe
Q 015657          168 S-R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       168 ~-~----~~~~~~~~~~~g~pi  184 (403)
                      . .    ...+.......+.++
T Consensus       146 ~~~~~v~~~~~~~~~~~~~~~~  167 (208)
T 2yc2_C          146 PQRHQVRLDMAQDWATTNTLDF  167 (208)
T ss_dssp             ----CCCHHHHHHHHHHTTCEE
T ss_pred             hhhccCCHHHHHHHHHHcCCEE
Confidence            4 1    234455566667655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.62  E-value=0.00026  Score=71.46  Aligned_cols=120  Identities=21%  Similarity=0.269  Sum_probs=62.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+..|+++|.+||||||+...|.      |.....+..  + +..     +. ..... .+.                  
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~------~~~~~~~~~--~-~gt-----T~-d~~~~-~~~------------------  219 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN--V-AGT-----TR-DAVDT-SFT------------------  219 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH------TSTTEEEC------------------CCE-EEE------------------
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHh------CCCceeecC--C-CCc-----ee-eeeEE-EEE------------------
Confidence            45668899999999999998877      333222221  0 111     00 00000 111                  


Q ss_pred             HhCCCcEEEEeCCCCccccH-----HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDK-----AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~-----~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                       ..+..+.|+||||......     +....+..+...-.++.+++|+|+..+  ......+......-...-+++||+|.
T Consensus       220 -~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl  298 (436)
T 2hjg_A          220 -YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA  298 (436)
T ss_dssp             -ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred             -ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccC
Confidence             1355799999999632110     111112222222235889999999543  22223333333333445589999996


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       299 ~~  300 (436)
T 2hjg_A          299 VD  300 (436)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.62  E-value=0.00014  Score=64.03  Aligned_cols=83  Identities=17%  Similarity=0.057  Sum_probs=45.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.|+||||.........    ..  ....+.+++|+|+........   ....+..   .-...-+|+||+|... 
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~  143 (192)
T 2fg5_A           70 ELHKFLIWDTAGQERFHSLAP----MY--YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI  143 (192)
T ss_dssp             SEEEEEEEEECCSGGGGGGTH----HH--HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEEEEEcCCCchhhHhhhH----Hh--hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence            457899999999643321111    11  123588899999865433222   2222221   1233458899999642 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+..+....+.|+
T Consensus       144 ~~v~~~~~~~~~~~~~~~~  162 (192)
T 2fg5_A          144 REVPLKDAKEYAESIGAIV  162 (192)
T ss_dssp             CCSCHHHHHHHHHTTTCEE
T ss_pred             cccCHHHHHHHHHHcCCEE
Confidence               1233444555556555

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.62  E-value=0.0002  Score=62.98  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .....|+++|.+||||||+...|.      +.+...++.   .|           ..+......                
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~------~~~~~~~~~---~~-----------t~~~~~~~~----------------   58 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVK------PAQSSSKHI---TA-----------TVGYNVETF----------------   58 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHS------CCC----CC---CC-----------CSSEEEEEE----------------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHh------cCCCccccc---cc-----------ccceeEEEE----------------
Confidence            344678999999999999997775      333211110   11           111111111                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhhc-----------CCeeE
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE-----------IGITG  158 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~~-----------~~i~G  158 (403)
                       ....+.+.|+||||........    ..  ..-.++.+++|+|+....   ........+...           -...-
T Consensus        59 -~~~~~~~~i~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii  131 (199)
T 4bas_A           59 -EKGRVAFTVFDMGGAKKFRGLW----ET--YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL  131 (199)
T ss_dssp             -EETTEEEEEEEECCSGGGGGGG----GG--GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE
T ss_pred             -EeCCEEEEEEECCCCHhHHHHH----HH--HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE
Confidence             1257889999999975321111    11  112458899999996543   222222222111           22344


Q ss_pred             EEEccCCCCCc
Q 015657          159 AILTKLDGDSR  169 (403)
Q Consensus       159 vIlNk~D~~~~  169 (403)
                      +|+||+|....
T Consensus       132 lv~NK~Dl~~~  142 (199)
T 4bas_A          132 FFANKMDAAGA  142 (199)
T ss_dssp             EEEECTTSTTC
T ss_pred             EEEECcCCCCC
Confidence            88999997543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.61  E-value=0.00059  Score=58.33  Aligned_cols=83  Identities=12%  Similarity=0.040  Sum_probs=40.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh-----cCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI-----EIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~-----~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.|+||||....+....   .. ......+.+++|+|..........   ...+..     .. +.-+|.||+|...
T Consensus        51 ~~~~~~~D~~g~~~~~~~~~---~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-piilv~NK~Dl~~  125 (175)
T 2nzj_A           51 DTTLVVVDTWEAEKLDKSWS---QE-SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV-PIILVGNKADLAR  125 (175)
T ss_dssp             EEEEEEECCC-------CHH---HH-HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----C-CEEEEEECTTCTT
T ss_pred             EEEEEEEecCCCCccchhhh---HH-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCC-CEEEEEEChhhcc
Confidence            46889999999753211111   11 111235788999998654332222   122221     22 2458999999653


Q ss_pred             c----hhHHHHHHHHhCCCe
Q 015657          169 R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi  184 (403)
                      .    ...+.......+.|+
T Consensus       126 ~~~v~~~~~~~~~~~~~~~~  145 (175)
T 2nzj_A          126 CREVSVEEGRACAVVFDCKF  145 (175)
T ss_dssp             TCCSCHHHHHHHHHHHTSEE
T ss_pred             ccccCHHHHHHHHHHcCCeE
Confidence            2    122333444566655

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.61  E-value=0.00021  Score=66.93  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +...|+++|.+|+||||+...|.
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~   57 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLI   57 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45678999999999999998887

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.61  E-value=0.00043  Score=58.43  Aligned_cols=84  Identities=23%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhh---h-cCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---I-EIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~---~-~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||...... +..   ...  ...+.+++|+|.......   ......+.   . .-...-+|+||+|....
T Consensus        50 ~~~~~l~D~~G~~~~~~-~~~---~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  123 (167)
T 1kao_A           50 PSVLEILDTAGTEQFAS-MRD---LYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE  123 (167)
T ss_dssp             EEEEEEEECCCTTCCHH-HHH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred             EEEEEEEECCCchhhHH-HHH---HHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence            46689999999654321 111   111  124788999998654332   22222221   1 12234589999995321


Q ss_pred             ----hhHHHHHHHHhCCCeEE
Q 015657          170 ----GGAALSVKEVSGKPIKL  186 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi~f  186 (403)
                          ...+.......+.|+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~  144 (167)
T 1kao_A          124 REVSSSEGRALAEEWGCPFME  144 (167)
T ss_dssp             CCSCHHHHHHHHHHHTSCEEE
T ss_pred             ccCCHHHHHHHHHHhCCCEEE
Confidence                23344555566777633

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.61  E-value=0.0028  Score=61.70  Aligned_cols=102  Identities=17%  Similarity=0.226  Sum_probs=59.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .++|+|++|+||||++..++..+... +..++.++|....... .-+.......+...-  ................+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~  122 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT-AIIGEIARSLNIPFP--RRGLSRDEFLALLVEHLRE  122 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH-HHHHHHHHHTTCCCC--SSCCCHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH-HHHHHHHHHhCccCC--CCCCCHHHHHHHHHHHHhh
Confidence            79999999999999999999988776 6788888876544211 111122222232211  1122333333333333322


Q ss_pred             -CCCcEEEEeCCCCccccHHhHHHHHHHh
Q 015657           96 -KNVDVVIVDTAGRLQIDKAMMDELKDVK  123 (403)
Q Consensus        96 -~~~D~VIIDtpg~l~~d~~l~~el~~i~  123 (403)
                       ....++|||=+..+  +......+..+.
T Consensus       123 ~~~~~vlilDE~~~l--~~~~~~~L~~~~  149 (389)
T 1fnn_A          123 RDLYMFLVLDDAFNL--APDILSTFIRLG  149 (389)
T ss_dssp             TTCCEEEEEETGGGS--CHHHHHHHHHHT
T ss_pred             cCCeEEEEEECcccc--chHHHHHHHHHH
Confidence             34679999988776  444444444443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.61  E-value=0.00037  Score=70.30  Aligned_cols=114  Identities=23%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.++|||||+...|.      |.+..+++ |  .|..       .........                   .+.
T Consensus         3 ~v~ivG~pnvGKStL~nrl~------~~~~~~v~-~--~~g~-------T~d~~~~~~-------------------~~~   47 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLV------KKKKAIVE-D--EEGV-------TRDPVQDTV-------------------EWY   47 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHH------C------------------------CCSEEEE-------------------EET
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCCCceec-C--CCCC-------ccceeeEEE-------------------EEC
Confidence            48899999999999998887      44433322 1  0111       000000001                   124


Q ss_pred             CCcEEEEeCCCCcccc-----HHhHHHHHHHhhhcCCceEEEEEecccHH--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQID-----KAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d-----~~l~~el~~i~~~~~~~~vllVvda~~g~--~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      +..+.|+||||.....     ..+.....  ...-.++.+++|+|+..+.  ........+...-...-+|+||+|..
T Consensus        48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~--~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~  123 (439)
T 1mky_A           48 GKTFKLVDTCGVFDNPQDIISQKMKEVTL--NMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL  123 (439)
T ss_dssp             TEEEEEEECTTTTSSGGGCCCHHHHHHHH--HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred             CeEEEEEECCCccccccchHHHHHHHHHH--HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence            5678999999975421     11211111  1223468999999985431  11122222222222345899999974

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.60  E-value=0.00025  Score=60.21  Aligned_cols=83  Identities=20%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||....... .   ...  .-..+.+++|+|+.........   ...+..   .-.+.-+|+||+|....
T Consensus        50 ~~~~~~~~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           50 HTVKFEIWDTAGQERFASL-A---PXY--YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             EEEEEEEEEECCSGGGGGG-H---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred             EEEEEEEEECCCChhhhhh-h---hhh--hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence            3568999999996533211 1   111  1235889999999655333222   222221   12234488899995421


Q ss_pred             -------hhHHHHHHHHhCCCe
Q 015657          170 -------GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 -------~~~~~~~~~~~g~pi  184 (403)
                             ...........+.++
T Consensus       124 ~~~~~v~~~~~~~~~~~~~~~~  145 (170)
T 1ek0_A          124 GGERKVAREEGEKLAEEKGLLF  145 (170)
T ss_dssp             SCCCCSCHHHHHHHHHHHTCEE
T ss_pred             ccccCCCHHHHHHHHHHcCCEE
Confidence                   123344455566655

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.60  E-value=0.00033  Score=70.10  Aligned_cols=94  Identities=15%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC-CChhhHHHHHHhhhccCC---------ceEeCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGEQVGV---------PVYTAG   77 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv---------~v~~~~   77 (403)
                      +..++.|+|++|+||||++..|+.....      .+.+|++++... +++....+   .....++         .+....
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~---~a~~~gl~~~~vleni~~~~~~  253 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS---IAQRFGLDPDDALNNVAYARAY  253 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH---HHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH---HHHHcCCChHhHhhcEEEeccC
Confidence            3478999999999999999988765543      357899998874 33332222   2223332         222111


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCcc
Q 015657           78 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        78 ~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~  110 (403)
                      ......+.+..+...+...++++||||.+..+.
T Consensus       254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~  286 (400)
T 3lda_A          254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALY  286 (400)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGC
T ss_pred             ChHHHHHHHHHHHHHHHhcCCceEEecchhhhC
Confidence            100112233444444445678999999877653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.59  E-value=0.00014  Score=64.26  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=37.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||.......    .....  -..+.+++|+|+.........      +......-...-+|+||+|..
T Consensus        74 ~~~l~l~Dt~G~~~~~~~----~~~~~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~  144 (192)
T 2il1_A           74 KIRLQIWDTAGQERFNSI----TSAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE  144 (192)
T ss_dssp             EEEEEEEEECCSGGGHHH----HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEeCCCcHHHHHH----HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            478999999996433211    11111  134889999998655433221      222222223345899999964

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.59  E-value=0.00018  Score=63.99  Aligned_cols=82  Identities=20%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh---hhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF---NIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~---~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||........    ...  .-.++.+++|+|..........   ...+   ...-...-+|+||+|.... 
T Consensus        73 ~~~l~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  146 (200)
T 2o52_A           73 TVKLQIWDTAGQERFRSVT----RSY--YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER  146 (200)
T ss_dssp             EEEEEEECCTTHHHHSCCC----HHH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred             eeEEEEEcCCCcHhHHHHH----HHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence            4789999999953211100    111  1235889999998655433222   1222   1112234588999996421 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.++
T Consensus       147 ~v~~~~~~~~~~~~~~~~  164 (200)
T 2o52_A          147 EVTFLEASRFAQENELMF  164 (200)
T ss_dssp             CSCHHHHHHHHHHTTCEE
T ss_pred             ccCHHHHHHHHHHcCCEE
Confidence               123344445556555

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.59  E-value=0.00024  Score=63.73  Aligned_cols=95  Identities=12%  Similarity=0.111  Sum_probs=57.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe--ccCCChhhHHHHHHhhhccCCce--EeCCCCCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPV--YTAGTEVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd--~D~~rp~~~~~l~~~~~~~gv~v--~~~~~~~~~~~~~~~   88 (403)
                      .+.++.+++|+.|+||||.+..++..+..+|++|+++.  .|. |.+.    .......|+..  ......       .+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~~~~-------~~   73 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAIKNS-------RE   73 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEESSS-------TH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEeeCCH-------HH
Confidence            34589999999999999999999999999999999986  332 1110    01122223321  111111       13


Q ss_pred             HHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHH
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV  122 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i  122 (403)
                      .++.+. ..||+||||-+..+.  ...+..+..+
T Consensus        74 i~~~~~-~~~dvViIDEaqfl~--~~~v~~l~~l  104 (191)
T 1xx6_A           74 ILKYFE-EDTEVIAIDEVQFFD--DEIVEIVNKI  104 (191)
T ss_dssp             HHHHCC-TTCSEEEECSGGGSC--THHHHHHHHH
T ss_pred             HHHHHh-ccCCEEEEECCCCCC--HHHHHHHHHH
Confidence            333332 369999999877753  2334444443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.58  E-value=0.00022  Score=61.38  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +..-|+++|.+||||||+...|.
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~   29 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYV   29 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHH
Confidence            44568899999999999997776

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.58  E-value=0.00021  Score=66.64  Aligned_cols=43  Identities=30%  Similarity=0.553  Sum_probs=34.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      ...|.+|+++|++||||||++..|+..+   +..+.+++.|.++..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~   71 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQ   71 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHh
Confidence            4567899999999999999999988765   345678899977643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.58  E-value=0.00017  Score=62.62  Aligned_cols=82  Identities=13%  Similarity=0.109  Sum_probs=39.6

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||......     + .....-..+.+++|+|+.........   ...+..   .-...-+|.||+|.... 
T Consensus        56 ~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  129 (183)
T 2fu5_C           56 RIKLQIWDTAGQERFRT-----I-TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR  129 (183)
T ss_dssp             EEEEEEEEC---------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred             EEEEEEEcCCCChhhhh-----h-HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence            47899999999643211     0 00111245889999999665433222   222221   12234589999996532 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+..+....+.|+
T Consensus       130 ~v~~~~~~~~~~~~~~~~  147 (183)
T 2fu5_C          130 QVSKERGEKLALDYGIKF  147 (183)
T ss_dssp             CSCHHHHHHHHHHHTCEE
T ss_pred             cCCHHHHHHHHHHcCCeE
Confidence               234455566667665

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.58  E-value=0.00034  Score=61.45  Aligned_cols=82  Identities=20%  Similarity=0.144  Sum_probs=44.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH------HHHHHhh---hcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFN---IEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~------~~~~~~~---~~~~i~GvIlNk~D~  166 (403)
                      ..+.+.|+||||...... +..   ...  ...+.+++|+|........      ..+....   ...+ .-+|+||+|.
T Consensus        54 ~~~~~~l~Dt~G~~~~~~-~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl  126 (199)
T 2gf0_A           54 SVCTLQITDTTGSHQFPA-MQR---LSI--SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDE  126 (199)
T ss_dssp             EEEEEEEEECCGGGSCHH-HHH---HHH--HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTC
T ss_pred             EEEEEEEEeCCChHHhHH-HHH---Hhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence            356899999999654321 111   111  1248889999986543221      1122221   1233 4589999997


Q ss_pred             CCc---hhHHHHHHHHhCCCe
Q 015657          167 DSR---GGAALSVKEVSGKPI  184 (403)
Q Consensus       167 ~~~---~~~~~~~~~~~g~pi  184 (403)
                      ...   ...+.......+.++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~  147 (199)
T 2gf0_A          127 TQREVDTREAQAVAQEWKCAF  147 (199)
T ss_dssp             SSCSSCHHHHHHHHHHHTCEE
T ss_pred             CccccCHHHHHHHHHHhCCeE
Confidence            532   233344455566555

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.57  E-value=0.00062  Score=58.97  Aligned_cols=85  Identities=11%  Similarity=-0.040  Sum_probs=46.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHH---HhhhcC-CeeEEEEccCCCCC-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVT---TFNIEI-GITGAILTKLDGDS-  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~---~~~~~~-~i~GvIlNk~D~~~-  168 (403)
                      .+.+.|+||||.........    ...  -..+.+++|+|.........   ...   ...... ...-+|.||+|... 
T Consensus        65 ~~~l~i~Dt~G~~~~~~~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  138 (183)
T 3kkq_A           65 WAILDVLDTAGQEEFSAMRE----QYM--RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL  138 (183)
T ss_dssp             EEEEEEEECCSCGGGCSSHH----HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred             EEEEEEEECCCchhhHHHHH----HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence            45567799999653321111    111  12488999999966533222   111   111111 22448999999642 


Q ss_pred             ---chhHHHHHHHHhCCCeEEe
Q 015657          169 ---RGGAALSVKEVSGKPIKLV  187 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi~fi  187 (403)
                         ....+..+....+.|+..+
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~  160 (183)
T 3kkq_A          139 RKVTRDQGKEMATKYNIPYIET  160 (183)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEEE
T ss_pred             cCcCHHHHHHHHHHhCCeEEEe
Confidence               2344566677778877444

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.57  E-value=0.00018  Score=69.37  Aligned_cols=92  Identities=22%  Similarity=0.369  Sum_probs=54.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH------------hCC----CcEEEEeccCC-ChhhHHHHHHhhhccCCc----
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK------------KQG----KSCMLVAGDVY-RPAAIDQLVILGEQVGVP----   72 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~------------~~G----~kVllVd~D~~-rp~~~~~l~~~~~~~gv~----   72 (403)
                      +..++.|+|.+|+||||++.+++...+            ..|    .+|++++++-. .+..+.+.   ....+++    
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~---~~~~g~~~~~~  173 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM---AEHAGIDGQTV  173 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH---HHHHTCCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH---HHHcCCCHHHH
Confidence            458999999999999999999998643            235    79999998853 34332222   2222222    


Q ss_pred             ---eEeCCCCCCHH---HHHHHHHHHHHh-CCCcEEEEeCCCCc
Q 015657           73 ---VYTAGTEVKPS---QIAKQGLEEAKK-KNVDVVIVDTAGRL  109 (403)
Q Consensus        73 ---v~~~~~~~~~~---~~~~~~l~~~~~-~~~D~VIIDtpg~l  109 (403)
                         ++... .....   +.+......+.. .++++||||+-..+
T Consensus       174 ~~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l  216 (322)
T 2i1q_A          174 LDNTFVAR-AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST  216 (322)
T ss_dssp             HHTEEEEE-CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred             hcCEEEEe-CCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence               11111 11222   223333333433 57889999987765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.55  E-value=0.00029  Score=60.43  Aligned_cols=83  Identities=13%  Similarity=0.047  Sum_probs=44.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhh---hcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN---IEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~---~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.........    ..  ...++.+++|+|+........   ....+.   ..-...-+|+||+|.... 
T Consensus        62 ~~~~~~~Dt~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  135 (179)
T 2y8e_A           62 TVRLQLWDTAGQERFRSLIP----SY--IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR  135 (179)
T ss_dssp             EEEEEEEEECCSGGGGGGSH----HH--HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred             EEEEEEEECCCcHHHHHHHH----HH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence            46899999999643322111    11  123588999999865433221   112211   112234589999996421 


Q ss_pred             ---hhHHHHHHHHhCCCeE
Q 015657          170 ---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~  185 (403)
                         ...+.......+.|+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (179)
T 2y8e_A          136 QVSTEEGERKAKELNVMFI  154 (179)
T ss_dssp             CSCHHHHHHHHHHHTCEEE
T ss_pred             cCCHHHHHHHHHHcCCeEE
Confidence               2333444555666653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.54  E-value=0.00017  Score=61.46  Aligned_cols=83  Identities=22%  Similarity=0.148  Sum_probs=43.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.|+||||......     +.. ...-..+.+++|+|..........   ...+.   ..-...-+|+||+|... 
T Consensus        53 ~~~~l~i~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  126 (170)
T 1z08_A           53 KRVNLAIWDTAGQERFHA-----LGP-IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE  126 (170)
T ss_dssp             CEEEEEEEECCCC------------C-CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred             EEEEEEEEECCCcHhhhh-----hHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence            346889999999643211     000 011245788999998655332222   11221   12223458999999643 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+.......+.++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~  145 (170)
T 1z08_A          127 RHVSIQEAESYAESVGAKH  145 (170)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccCHHHHHHHHHHcCCeE
Confidence               1233445555666655

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.54  E-value=0.00025  Score=69.50  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      .|+|+|.+||||||+...|.
T Consensus        33 ~I~vvG~~~~GKSSLln~L~   52 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFV   52 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTT
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            48899999999999998886

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.53  E-value=0.00027  Score=60.03  Aligned_cols=83  Identities=17%  Similarity=0.052  Sum_probs=43.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh---cCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~---~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||....... .   ...  ...++.+++|+|+........   ....+..   .-.+.-+|.||+|....
T Consensus        53 ~~~~~~~~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           53 TTVKFEIWDTAGQERYHSL-A---PMY--YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK  126 (170)
T ss_dssp             EEEEEEEEEECCSGGGGGG-H---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEEEEEeCCCcHHhhhh-h---HHh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence            3578999999996432211 1   111  123588999999965533222   2222221   11233466799996421


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+.......+.++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~  145 (170)
T 1r2q_A          127 RAVDFQEAQSYADDNSLLF  145 (170)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccCHHHHHHHHHHcCCeE
Confidence                233344445556554

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.53  E-value=0.00023  Score=66.07  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=34.2

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +.....++.+|++.|..||||||.+..|+.+|...|+++.++...|.
T Consensus        20 ~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~   66 (236)
T 3lv8_A           20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG   66 (236)
T ss_dssp             ------CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             cccCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence            33344457899999999999999999999999999999334444443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.52  E-value=0.0002  Score=62.91  Aligned_cols=83  Identities=20%  Similarity=0.089  Sum_probs=45.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhhh---cCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~~---~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||...... +..   ..  .-.++.+++|+|+.......   .....+..   .-...-+|+||+|....
T Consensus        72 ~~~~~~i~Dt~G~~~~~~-~~~---~~--~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~  145 (193)
T 2oil_A           72 AAVKAQIWDTAGLERYRA-ITS---AY--YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA  145 (193)
T ss_dssp             EEEEEEEEEESCCCTTCT-THH---HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEEEEEeCCCchhhhh-hhH---HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence            357889999999754321 111   11  12358899999986554322   22222221   12234589999996431


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+.......+.++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~  164 (193)
T 2oil_A          146 REVPTEEARMFAENNGLLF  164 (193)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccCHHHHHHHHHHcCCEE
Confidence                233344455566655

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.52  E-value=0.00033  Score=69.89  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=37.9

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCCc
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDSR  169 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~  169 (403)
                      +.+.|+||||.-.....+.    .  ....+|.+++|+|+..+   ......+.... ......-+++||+|....
T Consensus        75 ~~~~iiDtPGh~~~~~~~~----~--~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  144 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATML----S--GAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK  144 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHH----H--HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred             ceEEEEECCCcHHHHHHHH----H--HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch
Confidence            6899999999643322222    1  22346899999999543   22222222221 123334589999997643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.52  E-value=3.3e-05  Score=81.19  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=21.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +...|+++|.+++||||++..|....
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~  201 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFEL  201 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHc
Confidence            34568999999999999999987544

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.52  E-value=0.00037  Score=61.22  Aligned_cols=83  Identities=17%  Similarity=0.099  Sum_probs=45.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhhh---cCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~~---~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.|+||||.....    ......  .-..+.+++|+|........   .....+..   .-...-+|.||+|... 
T Consensus        70 ~~~~~~i~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  143 (191)
T 3dz8_A           70 KRVKLQIWDTAGQERYR----TITTAY--YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE  143 (191)
T ss_dssp             TTEEEEEECHHHHHHCH----HHHHHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEEEEEeCCChHHHH----HHHHHH--HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            46789999999953221    111111  12458899999986543322   22222211   2223458899999642 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+..+....+.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~  162 (191)
T 3dz8_A          144 RVVPTEKGQLLAEQLGFDF  162 (191)
T ss_dssp             CCSCHHHHHHHHHHHTCEE
T ss_pred             cccCHHHHHHHHHHcCCeE
Confidence               2233455566677765

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.51  E-value=0.00031  Score=71.81  Aligned_cols=117  Identities=18%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.+|+||||+...|.      +....++...   |...       .......+.                   .
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~------~~~~a~vs~~---~gtT-------~d~~~~~i~-------------------~  278 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLL------GQERAIVSHM---PGTT-------RDYIEECFI-------------------H  278 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC----------------------------------CEEEE-------------------E
T ss_pred             CEEEEECCCCCCHHHHHHHHh------CCCCcccCCC---CCce-------EEEEEEEEE-------------------E
Confidence            348999999999999998886      2222222110   0000       000000111                   1


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHH------HHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQ------EAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~------~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .++.+.|+||||...... .....   ......-.++.+++|+|+....      ........+. . ...-+|+||+|.
T Consensus       279 ~g~~l~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~-~piIvV~NK~Dl  355 (476)
T 3gee_A          279 DKTMFRLTDTAGLREAGE-EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-A-AKFLTVANKLDR  355 (476)
T ss_dssp             TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T-SEEEEEEECTTS
T ss_pred             CCeEEEEEECCCCCcchh-HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C-CCEEEEEECcCC
Confidence            467899999999754211 11110   1112233568899999985432      2223333332 2 234588999997


Q ss_pred             CCch
Q 015657          167 DSRG  170 (403)
Q Consensus       167 ~~~~  170 (403)
                      ....
T Consensus       356 ~~~~  359 (476)
T 3gee_A          356 AANA  359 (476)
T ss_dssp             CTTT
T ss_pred             CCcc
Confidence            6443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.51  E-value=9e-05  Score=65.04  Aligned_cols=37  Identities=32%  Similarity=0.517  Sum_probs=33.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++|+|+|.+||||||++..|+..|...|+.+.+++.|
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~   38 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence            5789999999999999999999999889999888644

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.51  E-value=0.0014  Score=57.19  Aligned_cols=111  Identities=16%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+...|+++|.+||||||+...|.      +.+..  ...+              ..+......                
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~------~~~~~--~~~~--------------t~~~~~~~~----------------   55 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFS------MNEVV--HTSP--------------TIGSNVEEI----------------   55 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHH------TTSCE--EEEC--------------CSCSSCEEE----------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh------cCCCC--cCcC--------------CCccceEEE----------------
Confidence            445668999999999999997776      21211  1111              011111100                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD  165 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D  165 (403)
                       ...++.+.|+||||.........    ..  .-.++.+++|+|+...   .........+..    .-...-+|+||+|
T Consensus        56 -~~~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  128 (187)
T 1zj6_A           56 -VINNTRFLMWDIGGQESLRSSWN----TY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD  128 (187)
T ss_dssp             -EETTEEEEEEECCC----CGGGH----HH--HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred             -EECCEEEEEEECCCCHhHHHHHH----HH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCC
Confidence             01357899999999753322111    11  1245889999999544   333333333221    1233458999999


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      ...
T Consensus       129 l~~  131 (187)
T 1zj6_A          129 VKE  131 (187)
T ss_dssp             STT
T ss_pred             CcC
Confidence            754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.51  E-value=0.00027  Score=59.93  Aligned_cols=67  Identities=19%  Similarity=0.230  Sum_probs=38.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||...... +.   ..  ....++.+++|+|+....   ........+..    .-...-+|.||+|...
T Consensus        42 ~~~~~~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (164)
T 1r8s_A           42 KNISFTVWDVGGQDKIRP-LW---RH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN  115 (164)
T ss_dssp             SSCEEEEEECCCCGGGHH-HH---HH--HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             CCEEEEEEEcCCChhhHH-HH---HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence            468899999999753211 11   11  123458899999986542   22222322221    1223458999999754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.51  E-value=0.00059  Score=61.07  Aligned_cols=84  Identities=19%  Similarity=0.120  Sum_probs=47.2

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhh----cCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNI----EIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~----~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||....    .......  .-..+.+++|+|+..........   ..+..    .-...-+|+||+|....
T Consensus        83 ~~~l~l~Dt~G~~~~----~~~~~~~--~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~  156 (217)
T 2f7s_A           83 KVHLQLWDTAGQERF----RSLTTAF--FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ  156 (217)
T ss_dssp             EEEEEEEEEESHHHH----HHHHHHH--HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             eEEEEEEECCCcHhH----HhHHHHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence            578999999995321    1111111  22458899999997654433322   22221    11234588999996431


Q ss_pred             ----hhHHHHHHHHhCCCeEE
Q 015657          170 ----GGAALSVKEVSGKPIKL  186 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi~f  186 (403)
                          ...+..+....+.++..
T Consensus       157 ~~v~~~~~~~~~~~~~~~~~~  177 (217)
T 2f7s_A          157 REVNERQARELADKYGIPYFE  177 (217)
T ss_dssp             CCSCHHHHHHHHHHTTCCEEE
T ss_pred             cccCHHHHHHHHHHCCCcEEE
Confidence                23445556667777633

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.51  E-value=0.00077  Score=57.84  Aligned_cols=82  Identities=20%  Similarity=0.119  Sum_probs=43.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh----hhcCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF----NIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~----~~~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||...... +..   ....  ..+.+++|+|..........   ...+    ...-...-+|+||+|....
T Consensus        56 ~~~~~~~Dt~G~~~~~~-~~~---~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  129 (181)
T 2fn4_A           56 PARLDILDTAGQEEFGA-MRE---QYMR--AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ  129 (181)
T ss_dssp             EEEEEEEECCCTTTTSC-CHH---HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred             EEEEEEEECCCchhhHH-HHH---HHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            46789999999653321 111   1111  24888999998654332221   1122    1111234589999996432


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+.......+.++
T Consensus       130 ~~v~~~~~~~~~~~~~~~~  148 (181)
T 2fn4_A          130 RQVPRSEASAFGASHHVAY  148 (181)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccCHHHHHHHHHHcCCeE
Confidence                223344444555555

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.49  E-value=0.004  Score=60.18  Aligned_cols=95  Identities=20%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC---CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ   88 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~---G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~   88 (403)
                      ...+..++++|++|+||||++..++..+...   +..+..++|..... ....+.......+.+.-.  ......+....
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~  118 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT-PYRVLADLLESLDVKVPF--TGLSIAELYRR  118 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS-HHHHHHHHTTTTSCCCCS--SSCCHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC-HHHHHHHHHHHhCCCCCC--CCCCHHHHHHH
Confidence            3456789999999999999999999988765   77888888653221 111122222333332111  11223344444


Q ss_pred             HHHHHHhCC-CcEEEEeCCCCc
Q 015657           89 GLEEAKKKN-VDVVIVDTAGRL  109 (403)
Q Consensus        89 ~l~~~~~~~-~D~VIIDtpg~l  109 (403)
                      ....+...+ ..++|||=+..+
T Consensus       119 l~~~l~~~~~~~vlilDE~~~l  140 (386)
T 2qby_A          119 LVKAVRDYGSQVVIVLDEIDAF  140 (386)
T ss_dssp             HHHHHHTCCSCEEEEEETHHHH
T ss_pred             HHHHHhccCCeEEEEEcChhhh
Confidence            444443222 678999976554

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.48  E-value=0.00019  Score=62.95  Aligned_cols=67  Identities=15%  Similarity=0.098  Sum_probs=37.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||...... +   ....  ...++.+++|+|+...   +.+......+..    .-...-+|+||+|...
T Consensus        65 ~~~~~~l~Dt~G~~~~~~-~---~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (188)
T 1zd9_A           65 GNVTIKLWDIGGQPRFRS-M---WERY--CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG  138 (188)
T ss_dssp             TTEEEEEEEECCSHHHHT-T---HHHH--HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             CCEEEEEEECCCCHhHHH-H---HHHH--HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence            468899999999643211 1   1111  1245889999998543   222222222211    1123458999999754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.48  E-value=0.00016  Score=61.66  Aligned_cols=68  Identities=19%  Similarity=0.140  Sum_probs=38.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||........    ..  ..-..+.+++|+|+...   .........+..    .-...-+|+||+|...
T Consensus        49 ~~~~~~~~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  122 (171)
T 1upt_A           49 KNLKFQVWDLGGLTSIRPYW----RC--YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ  122 (171)
T ss_dssp             TTEEEEEEEECCCGGGGGGG----GG--GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             CCEEEEEEECCCChhhhHHH----HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence            36789999999974321111    01  11245889999998543   333333322221    1233458999999754


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       123 ~  123 (171)
T 1upt_A          123 A  123 (171)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.48  E-value=0.00073  Score=60.93  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=31.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh------CCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~------~G~kVllVd~D~   53 (403)
                      +..+++++|++||||||++..|+..+..      .+..++.++.+.
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            4588999999999999999999876553      244677777664

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.48  E-value=0.00046  Score=60.04  Aligned_cols=110  Identities=17%  Similarity=0.205  Sum_probs=60.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +...|+++|.+||||||+...|.      +.+.....     |           ..+......                 
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~-----~-----------t~~~~~~~~-----------------   60 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFS------MNEVVHTS-----P-----------TIGSNVEEI-----------------   60 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHH------TTSCEEEE-----C-----------CSSSSCEEE-----------------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHh------cCCCCccC-----C-----------cCceeeEEE-----------------
Confidence            34568899999999999997776      22221110     0           011111100                 


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDG  166 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~  166 (403)
                      ...++.+.|+||||........    ..  ..-..+.+++|+|+...   +.+......+..    .-...-+|+||+|.
T Consensus        61 ~~~~~~~~i~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  134 (181)
T 2h17_A           61 VINNTRFLMWDIGGQESLRSSW----NT--YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  134 (181)
T ss_dssp             EETTEEEEEEEESSSGGGTCGG----GG--GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             EECCEEEEEEECCCCHhHHHHH----HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence            0145889999999974321111    11  11245889999998543   333333332221    22234588999997


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       135 ~~  136 (181)
T 2h17_A          135 KE  136 (181)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.48  E-value=0.00077  Score=68.33  Aligned_cols=119  Identities=19%  Similarity=0.231  Sum_probs=62.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+..|+++|.+|+||||+...|.      |.....+...   +..       ........+.                  
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~------~~~~~~~~~~---~gt-------t~~~~~~~~~------------------  239 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAML------GEERVIVSNV---AGT-------TRDAVDTSFT------------------  239 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC----------------CTTSEEEE------------------
T ss_pred             ccceeEEecCCCCCHHHHHHHHh------CCCccccCCC---CCe-------EEEEEEEEEE------------------
Confidence            45668899999999999998776      3332222211   110       0000000111                  


Q ss_pred             HhCCCcEEEEeCCCCccc-----cHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           94 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                       ..+..+.|+||||....     ..+....+..+...-.++.+++|+|+..+  ......+......-...-+|+||+|.
T Consensus       240 -~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl  318 (456)
T 4dcu_A          240 -YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA  318 (456)
T ss_dssp             -ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred             -ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence             13568999999995321     01111222222222235889999999543  22233333333223345589999996


Q ss_pred             C
Q 015657          167 D  167 (403)
Q Consensus       167 ~  167 (403)
                      .
T Consensus       319 ~  319 (456)
T 4dcu_A          319 V  319 (456)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.47  E-value=2.1e-05  Score=70.57  Aligned_cols=27  Identities=44%  Similarity=0.652  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      +++++|++|+||||+...|+..+...|
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHHhhcccCC
Confidence            588999999999999999999998667

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.47  E-value=0.00076  Score=60.10  Aligned_cols=38  Identities=32%  Similarity=0.618  Sum_probs=30.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      .+++|+|+|.+||||||++..|+..+   |  ..++++|....
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~   54 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP   54 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence            46789999999999999999998877   3  34678886543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.47  E-value=0.0003  Score=61.65  Aligned_cols=84  Identities=19%  Similarity=0.153  Sum_probs=45.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh----cCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI----EIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~----~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||.......+..   ..  .-.++.+++|+|+.........   ...+..    .-...-+|+||+|....
T Consensus        68 ~~~~~l~Dt~G~~~~~~~~~~---~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           68 RIKIQLWDTAGQERFRKSMVQ---HY--YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA  142 (189)
T ss_dssp             EEEEEEEECCCSHHHHTTTHH---HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred             EEEEEEEECCCchhhhhhhhH---HH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            478999999996422101111   11  1245889999998654332221   111111    11234489999997432


Q ss_pred             ----hhHHHHHHHHhCCCeE
Q 015657          170 ----GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi~  185 (403)
                          ...+..+....+.++.
T Consensus       143 ~~v~~~~~~~~~~~~~~~~~  162 (189)
T 1z06_A          143 IQVPTDLAQKFADTHSMPLF  162 (189)
T ss_dssp             CCSCHHHHHHHHHHTTCCEE
T ss_pred             ceeCHHHHHHHHHHcCCEEE
Confidence                2334455566677663

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.47  E-value=0.00041  Score=59.56  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .-|+++|.+|+||||+...|.
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~   28 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999997775

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.46  E-value=0.00037  Score=61.60  Aligned_cols=112  Identities=25%  Similarity=0.274  Sum_probs=58.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+..-|+++|.+||||||+...|.      +.+..  ..   .|           ..+......                
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~------~~~~~--~~---~~-----------t~~~~~~~~----------------   68 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IP-----------TIGFNVETV----------------   68 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC------SSCCE--EE---EE-----------ETTEEEEEE----------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH------hCCcc--cc---CC-----------cCceeEEEE----------------
Confidence            345668999999999999997774      21211  10   11           011111100                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD  165 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D  165 (403)
                       ...++.+.|+||||.........    ..  .-.++.+++|+|+...   ......+..+..    .-...-+|+||+|
T Consensus        69 -~~~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D  141 (192)
T 2b6h_A           69 -EYKNICFTVWDVGGQDKIRPLWR----HY--FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD  141 (192)
T ss_dssp             -EETTEEEEEEECC-----CTTHH----HH--HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             -EECCEEEEEEECCCCHhHHHHHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence             01467899999999743221111    11  1245889999998654   222222222221    1233458999999


Q ss_pred             CCCc
Q 015657          166 GDSR  169 (403)
Q Consensus       166 ~~~~  169 (403)
                      ....
T Consensus       142 l~~~  145 (192)
T 2b6h_A          142 MPNA  145 (192)
T ss_dssp             STTC
T ss_pred             CCCC
Confidence            7543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.46  E-value=0.00032  Score=72.98  Aligned_cols=70  Identities=20%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CcEEEEeCCCCccccHH-------hHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           98 VDVVIVDTAGRLQIDKA-------MMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~-------l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      ..++||||||.......       .........  ..++.+++|+|+..   .......+..+...-...-+|+||+|..
T Consensus       154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV  231 (550)
T ss_dssp             HHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred             CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence            36899999998641110       111111111  23588999999943   3444444444433222355899999976


Q ss_pred             Cc
Q 015657          168 SR  169 (403)
Q Consensus       168 ~~  169 (403)
                      ..
T Consensus       232 ~~  233 (550)
T 2qpt_A          232 ET  233 (550)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.46  E-value=0.0006  Score=57.73  Aligned_cols=66  Identities=21%  Similarity=0.029  Sum_probs=36.3

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH---HHHHHhh---h-cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFN---I-EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~---~~~~~~~---~-~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||....... ..   ...  ...+.+++|+|........   .....+.   . .-...-+|+||+|..
T Consensus        49 ~~~~~~l~D~~G~~~~~~~-~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1c1y_A           49 QQCMLEILDTAGTEQFTAM-RD---LYM--KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             CEEEEEEEEECSSCSSTTH-HH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             EEEEEEEEECCChHHHHHH-HH---HHh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence            3578999999996543221 11   111  1248889999986543222   2211121   1 112344899999964

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.46  E-value=0.00027  Score=61.94  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=38.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh------cCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI------EIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~------~~~i~GvIlNk~D~  166 (403)
                      .++.+.|+||||.........    .  ..-..+.+++|+|+........   ....+..      .-...-+|+||+|.
T Consensus        65 ~~~~~~l~Dt~G~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  138 (190)
T 2h57_A           65 SSLSFTVFDMSGQGRYRNLWE----H--YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL  138 (190)
T ss_dssp             SSCEEEEEEECCSTTTGGGGG----G--GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred             CCEEEEEEECCCCHHHHHHHH----H--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence            357899999999654321111    1  1123588999999966533322   2222221      11234489999997


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       139 ~~  140 (190)
T 2h57_A          139 RD  140 (190)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.46  E-value=0.00028  Score=61.26  Aligned_cols=82  Identities=20%  Similarity=0.072  Sum_probs=43.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---H---HHhhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---V---TTFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~---~~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||......    ....  ..-.++.+++|+|+.........   .   ......-...-+|+||+|.... 
T Consensus        58 ~~~~~l~Dt~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  131 (186)
T 2bme_A           58 YVKLQIWDTAGQERFRS----VTRS--YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR  131 (186)
T ss_dssp             EEEEEEEEECCSGGGHH----HHHT--TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEEEEEEeCCCcHHHHH----HHHH--HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence            36899999999643211    1111  12245889999998655433221   1   1121222234589999996421 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.++
T Consensus       132 ~~~~~~~~~~~~~~~~~~  149 (186)
T 2bme_A          132 EVTFLEASRFAQENELMF  149 (186)
T ss_dssp             CSCHHHHHHHHHHTTCEE
T ss_pred             ccCHHHHHHHHHHcCCEE
Confidence               123344445556554

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.44  E-value=0.0002  Score=63.48  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +...|+++|.+||||||+...|.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~   29 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYV   29 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHH
Confidence            34568899999999999997775

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.44  E-value=0.00029  Score=63.13  Aligned_cols=82  Identities=18%  Similarity=0.142  Sum_probs=44.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHh---hhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTF---NIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~---~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||.-..     ..+. ......++.+++|+|+........   ....+   ...-...-+|.||+|.... 
T Consensus        74 ~~~l~l~Dt~G~~~~-----~~~~-~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~  147 (201)
T 2ew1_A           74 KVKLQIWDTAGQERF-----RSIT-QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR  147 (201)
T ss_dssp             EEEEEEEEECCSGGG-----HHHH-GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEEEEEEECCCcHHH-----HHHH-HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence            468999999996432     1111 111224588999999865543321   11222   1122234588899996421 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.++
T Consensus       148 ~v~~~~~~~~~~~~~~~~  165 (201)
T 2ew1_A          148 EVSQQRAEEFSEAQDMYY  165 (201)
T ss_dssp             SSCHHHHHHHHHHHTCCE
T ss_pred             ccCHHHHHHHHHHcCCEE
Confidence               233344455566665

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.44  E-value=0.00045  Score=67.01  Aligned_cols=73  Identities=14%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      .++++++|++|+||||++..+|..   .|.+|++++++...+              +..+.    ......+....+.+.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~--------------v~~~~----~~le~~l~~i~~~l~  181 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEP--------------LSGYN----TDFNVFVDDIARAML  181 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCS--------------STTCB----CCHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhh--------------hhhhh----cCHHHHHHHHHHHHh
Confidence            467889999999999999999876   578898888721111              01111    234444544555554


Q ss_pred             hCCCcEEEEeCCCCcc
Q 015657           95 KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~  110 (403)
                      .  +++||||.-..+.
T Consensus       182 ~--~~LLVIDsI~aL~  195 (331)
T 2vhj_A          182 Q--HRVIVIDSLKNVI  195 (331)
T ss_dssp             H--CSEEEEECCTTTC
T ss_pred             h--CCEEEEecccccc
Confidence            3  3499999977664

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.43  E-value=0.00058  Score=57.96  Aligned_cols=83  Identities=6%  Similarity=-0.138  Sum_probs=39.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhhc----CCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE----IGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~~----~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||...... +..   ..  ....+.+++|+|..........   ...+...    -.+.-+|.||+|...
T Consensus        47 ~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  120 (166)
T 3q72_A           47 EEASLMVYDIWEQDGGRW-LPG---HC--MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR  120 (166)
T ss_dssp             EEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred             EEEEEEEEECCCCccchh-hhh---hh--hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence            457889999999653211 110   11  1234788999998655333222   2222111    123458899999643


Q ss_pred             c----hhHHHHHHHHhCCCe
Q 015657          169 R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi  184 (403)
                      .    ...+.......+.|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~  140 (166)
T 3q72_A          121 SREVSVDEGRACAVVFDCKF  140 (166)
T ss_dssp             SCCSCHHHHHHHHHHTTCEE
T ss_pred             ccccCHHHHHHHHHHhCCcE
Confidence            2    233344555566655

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00025  Score=64.14  Aligned_cols=82  Identities=15%  Similarity=0.076  Sum_probs=42.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|+||||........    ..  ..-..+.+++|+|..........   ...+..   .-...-+|+||+|.... 
T Consensus        61 ~~~~~i~Dt~G~~~~~~~~----~~--~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~  134 (223)
T 3cpj_B           61 RIKAQIWDTAGQERYRAIT----SA--YYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR  134 (223)
T ss_dssp             EEEEEEECCTTTTTTTCCC----GG--GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred             EEEEEEEECCCccchhhhH----HH--HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            4789999999964321110    00  11235788999998655433222   222221   12234588899996431 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.++
T Consensus       135 ~v~~~~~~~~~~~~~~~~  152 (223)
T 3cpj_B          135 AVPTEESKTFAQENQLLF  152 (223)
T ss_dssp             CSCHHHHHHHHHHTTCEE
T ss_pred             ccCHHHHHHHHHHcCCEE
Confidence               223344445556554

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.42  E-value=0.00033  Score=62.57  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH----HHHhh---hcCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL----VTTFN---IEIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~----~~~~~---~~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||.........      ......+.+++|+|..........    ...+.   ...+ .-+|+||+|....
T Consensus        72 ~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~  144 (207)
T 2fv8_A           72 QVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSD  144 (207)
T ss_dssp             EEEEEEEECTTCTTCTTTGG------GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred             EEEEEEEECCCcHHHHHHHH------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence            47899999999653321100      011235888999998655333222    11222   2333 3489999997543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.41  E-value=0.00019  Score=62.25  Aligned_cols=111  Identities=23%  Similarity=0.271  Sum_probs=59.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .++..|+++|.+||||||+...|.      +.+..  .   +.|           ..+......                
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~------~~~~~--~---~~~-----------t~~~~~~~~----------------   57 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ------IGEVV--T---TKP-----------TIGFNVETL----------------   57 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC------CSEEE--E---ECS-----------STTCCEEEE----------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh------cCCcC--c---cCC-----------cCccceEEE----------------
Confidence            456678999999999999997665      22321  1   111           111111110                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD  165 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D  165 (403)
                       ...++.+.|+||||.........    .  ....++.+++|+|+...   +........+..    .-...-+|+||+|
T Consensus        58 -~~~~~~~~i~Dt~G~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  130 (183)
T 1moz_A           58 -SYKNLKLNVWDLGGQTSIRPYWR----C--YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD  130 (183)
T ss_dssp             -EETTEEEEEEEEC----CCTTGG----G--TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTT
T ss_pred             -EECCEEEEEEECCCCHhHHHHHH----H--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCC
Confidence             01357899999999754321110    0  11235788999998543   333333333321    2233558999999


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      ...
T Consensus       131 l~~  133 (183)
T 1moz_A          131 QPG  133 (183)
T ss_dssp             STT
T ss_pred             CCC
Confidence            654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.40  E-value=0.00079  Score=58.75  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+...|+++|.+||||||+...|.      +.....+.     |           ..+......                
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~------~~~~~~~~-----~-----------t~g~~~~~~----------------   55 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLA------SEDISHIT-----P-----------TQGFNIKSV----------------   55 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHC------CSCCEEEE-----E-----------ETTEEEEEE----------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHh------cCCCCccc-----C-----------cCCeEEEEE----------------
Confidence            345668999999999999997775      22221111     1           111111110                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhh----cCCeeEEEEccCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLD  165 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~----~~~i~GvIlNk~D  165 (403)
                       ...++.+.|+||||......    .....  ...++.+++|+|+....   ........+..    .-.+.-+|.||+|
T Consensus        56 -~~~~~~l~i~Dt~G~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  128 (181)
T 1fzq_A           56 -QSQGFKLNVWDIGGQRKIRP----YWRSY--FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD  128 (181)
T ss_dssp             -EETTEEEEEEECSSCGGGHH----HHHHH--HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred             -EECCEEEEEEECCCCHHHHH----HHHHH--hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcC
Confidence             01367899999999653211    11111  12458899999986542   22222222211    1123458899999


Q ss_pred             CCCc
Q 015657          166 GDSR  169 (403)
Q Consensus       166 ~~~~  169 (403)
                      ....
T Consensus       129 l~~~  132 (181)
T 1fzq_A          129 LLTA  132 (181)
T ss_dssp             STTC
T ss_pred             cccC
Confidence            7543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.40  E-value=0.00047  Score=61.11  Aligned_cols=83  Identities=14%  Similarity=0.075  Sum_probs=45.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhhc----CCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE----IGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~~----~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||.........      ......+.+++|+|.........   ....+...    -...-+|+||+|...
T Consensus        70 ~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  143 (201)
T 3oes_A           70 DEFHLHLVDTAGQDEYSILPY------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP  143 (201)
T ss_dssp             -CEEEEEEEECCCCTTCCCCG------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred             EEEEEEEEECCCccchHHHHH------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence            467899999999653211100      11123588899999865533322   22222211    123458899999642


Q ss_pred             ----chhHHHHHHHHhCCCe
Q 015657          169 ----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ----~~~~~~~~~~~~g~pi  184 (403)
                          ....+..+....+.|+
T Consensus       144 ~~~v~~~~~~~~~~~~~~~~  163 (201)
T 3oes_A          144 EREVQAVEGKKLAESWGATF  163 (201)
T ss_dssp             GCCSCHHHHHHHHHHHTCEE
T ss_pred             ccccCHHHHHHHHHHhCCeE
Confidence                2233455666677766

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.40  E-value=0.0015  Score=57.09  Aligned_cols=35  Identities=29%  Similarity=0.514  Sum_probs=28.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+.+|+++|.+||||||++..|+..+   |  ..+++.|
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d   38 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG   38 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence            356899999999999999998888766   4  3456765

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.39  E-value=0.00017  Score=64.54  Aligned_cols=43  Identities=35%  Similarity=0.651  Sum_probs=37.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ..++.+|+++|++||||||++..|+..+...|..+..+|.|..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            3567999999999999999999999999877887778887743

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.39  E-value=0.00013  Score=63.93  Aligned_cols=38  Identities=32%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +.+|+++|++||||||++..|+..|...|.+..+++.|
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~   40 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   40 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence            46899999999999999999999998888666666654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.38  E-value=0.00023  Score=61.60  Aligned_cols=82  Identities=12%  Similarity=0.004  Sum_probs=44.3

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh----hcCCeeEEEEccCCCCC-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN----IEIGITGAILTKLDGDS-  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~----~~~~i~GvIlNk~D~~~-  168 (403)
                      .+.+.|+||||...... +..   .  .....+.+++|+|..........   ...+.    ..-...-+|.||+|... 
T Consensus        53 ~~~~~l~Dt~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  126 (181)
T 3t5g_A           53 EYHLQLVDTAGQDEYSI-FPQ---T--YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME  126 (181)
T ss_dssp             EEEEEEEECCCCCTTCC-CCG---G--GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred             EEEEEEEeCCCchhhhH-HHH---H--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence            47789999999654311 000   0  11135888999998654333222   11221    11123448899999642 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+.......+.|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~  145 (181)
T 3t5g_A          127 RVISYEEGKALAESWNAAF  145 (181)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             ceecHHHHHHHHHHhCCcE
Confidence               2234455666677665

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.37  E-value=0.00037  Score=66.41  Aligned_cols=41  Identities=24%  Similarity=0.515  Sum_probs=32.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ...|.+|+++|++||||||++..|+..+.   .....|++|.++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R   70 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK   70 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence            45689999999999999999998886552   245688998654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.37  E-value=0.00037  Score=61.93  Aligned_cols=67  Identities=13%  Similarity=0.177  Sum_probs=35.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      .++++.|+||||...... +.   ...  ...++.+++|+|+....   .+......+..    .-.+.-+|.||+|...
T Consensus        67 ~~~~l~i~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           67 AGMTFTTFDLGGHIQARR-VW---KNY--LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE  140 (198)
T ss_dssp             TTEEEEEEEECC----CC-GG---GGG--GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             CCEEEEEEECCCcHhhHH-HH---HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence            357899999999643211 10   011  12458899999986543   22222222211    1123458899999754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.36  E-value=0.00068  Score=60.53  Aligned_cols=67  Identities=13%  Similarity=0.084  Sum_probs=37.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH-HHHHH---HHh-h-----hcCCeeEEEEccCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALV---TTF-N-----IEIGITGAILTKLDG  166 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~-~~~~~---~~~-~-----~~~~i~GvIlNk~D~  166 (403)
                      .+.+.|+||||.......+.   ..+  ...++.+++|+|+..... .....   ... .     ..-.+.-+|.||+|.
T Consensus        53 ~~~~~i~Dt~G~~~~~~~~~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  127 (214)
T 2fh5_B           53 GNSLTLIDLPGHESLRFQLL---DRF--KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI  127 (214)
T ss_dssp             CCEEEEEECCCCHHHHHHHH---HHH--GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred             ccEEEEEECCCChhHHHHHH---HHH--HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence            57899999999753221111   111  223578899999965322 22221   111 1     112234589999996


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       128 ~~  129 (214)
T 2fh5_B          128 AM  129 (214)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.36  E-value=0.00037  Score=61.28  Aligned_cols=82  Identities=16%  Similarity=0.056  Sum_probs=45.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH----Hhhhc--CCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT----TFNIE--IGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~----~~~~~--~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.|+||||.-......    .  .....++.+++|+|............    .+...  -...-+|.||+|... 
T Consensus        69 ~~~~~~i~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  142 (194)
T 3reg_A           69 EEFILHLWDTAGQEEYDRLR----P--LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD  142 (194)
T ss_dssp             EEEEEEEEEECCSGGGTTTG----G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred             EEEEEEEEECCCcHHHHHHh----H--hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence            35678999999964321100    0  11124588999999976654433211    11111  123458899999542 


Q ss_pred             -----chhHHHHHHHHhCCC
Q 015657          169 -----RGGAALSVKEVSGKP  183 (403)
Q Consensus       169 -----~~~~~~~~~~~~g~p  183 (403)
                           ....+.......+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~  162 (194)
T 3reg_A          143 GSDDVTKQEGDDLCQKLGCV  162 (194)
T ss_dssp             TTTCCCHHHHHHHHHHHTCS
T ss_pred             CCCcccHHHHHHHHHhcCCC
Confidence                 223445566667766

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.36  E-value=0.00024  Score=63.72  Aligned_cols=44  Identities=30%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ..++.+++++|++||||||++..|+..+...|.+|.+++.|.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            34678999999999999999999999998888899999888654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.36  E-value=0.00046  Score=60.82  Aligned_cols=67  Identities=18%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH---HHHHHHHhh----hcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFN----IEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~---~~~~~~~~~----~~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||...... +.   ..  ....++.+++|+|+.....   .......+.    ..-.+.-+|.||+|...
T Consensus        65 ~~~~~~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           65 GNIKFTTFDLGGHIQARR-LW---KD--YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             TTEEEEEEECCCSGGGTT-SG---GG--GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             CCEEEEEEECCCCHHHHH-HH---HH--HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence            357899999999753211 10   01  1124588999999965432   222222221    11223458999999754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.35  E-value=0.00029  Score=60.87  Aligned_cols=65  Identities=15%  Similarity=0.126  Sum_probs=33.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||.........      ...-..+.+++|+|+..........    ..+.   ...+ .-+|+||+|..
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~  125 (182)
T 3bwd_D           54 ATVNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLR  125 (182)
T ss_dssp             ----CEEECCCC-CTTTTTGG------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred             EEEEEEEEECCCChhhhhhHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhh
Confidence            356778999999643211100      1112358899999986554332221    2222   2233 44889999954

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.35  E-value=0.00019  Score=73.13  Aligned_cols=66  Identities=15%  Similarity=0.191  Sum_probs=35.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHHH-hhhcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTT-FNIEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~~-~~~~~~i~GvIlNk~D  165 (403)
                      +++.+.|+||||...+...+.      .....+|.+++|+|+..+.         .....+.. ....++..-|++||+|
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~~------~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~D  192 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNMI------NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD  192 (467)
T ss_dssp             SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred             CCeEEEEEECCCcHHHHHHHH------hhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECcc
Confidence            467899999999754322211      1223468999999996542         12222221 1222332347899999


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      ..
T Consensus       193 l~  194 (467)
T 1r5b_A          193 EP  194 (467)
T ss_dssp             ST
T ss_pred             CC
Confidence            74

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.35  E-value=0.00034  Score=76.41  Aligned_cols=64  Identities=19%  Similarity=0.368  Sum_probs=39.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHH-hhhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTT-FNIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~-~~~~~~i~GvIlNk~D~~  167 (403)
                      .++.+.||||||...+.......+      -.++.+++|+|+..+   ++. ..... ....++ .-+|+||+|..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l------~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~~~p-~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAAL------RVTDGALVVVDTIEGVCVQTE-TVLRQALGERIK-PVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHH------HTCSEEEEEEETTTBSCHHHH-HHHHHHHHTTCE-EEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHH------HhCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-eEEEEECCCcc
Confidence            368899999999876544332222      235899999999544   322 22222 223333 35899999964

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.34  E-value=0.00023  Score=62.26  Aligned_cols=40  Identities=45%  Similarity=0.711  Sum_probs=35.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ++.+|+++|..||||||++..|+..|...|+++..+|.|.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~   43 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   43 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence            5678999999999999999999999987898888888763

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.34  E-value=0.00011  Score=78.71  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=25.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+..|+|+|.+|+||||+...|.      |.+++.++.+
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLl------g~~~~~v~~~  100 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALI------GENLLPSDVN  100 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH------TSSCSCCCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh------CCCCCCCCCC
Confidence            45668999999999999998888      6666544443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.33  E-value=0.00078  Score=58.42  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ...|+++|.+||||||+...|+
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~   25 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALA   25 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4568899999999999997776

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.33  E-value=0.00045  Score=70.71  Aligned_cols=66  Identities=23%  Similarity=0.286  Sum_probs=39.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      +++.+.|+||||...    ....+.  .....+|.+++|+|+..   .++...........+++ -+++||+|...
T Consensus        71 ~~~~i~iiDtPGh~~----~~~~~~--~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~  139 (482)
T 1wb1_A           71 ENYRITLVDAPGHAD----LIRAVV--SAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAG  139 (482)
T ss_dssp             TTEEEEECCCSSHHH----HHHHHH--HHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSC
T ss_pred             CCEEEEEEECCChHH----HHHHHH--HHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCccc
Confidence            457899999999632    222222  22234689999999965   23322222111223444 58999999764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.32  E-value=0.0016  Score=67.22  Aligned_cols=86  Identities=9%  Similarity=0.054  Sum_probs=48.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHhhhcCCeeEEEEccCCCCCch--
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNIEIGITGAILTKLDGDSRG--  170 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~~~~~~i~GvIlNk~D~~~~~--  170 (403)
                      ..+.+.|+||||.-.... +..   .+  .-.++.+++|+|+..........   ..+....+ .-+|.||+|.....  
T Consensus        96 ~~~~~~i~Dt~G~e~~~~-~~~---~~--l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v  168 (535)
T 3dpu_A           96 KECLFHFWDFGGQEIMHA-SHQ---FF--MTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNI  168 (535)
T ss_dssp             TTCEEEEECCCSCCTTTT-TCH---HH--HHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCC
T ss_pred             ceEEEEEEECCcHHHHHH-HHH---HH--ccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCC-EEEEEECCCccccccc
Confidence            368899999999533211 111   11  11358889999996554433333   33333334 34899999965322  


Q ss_pred             --hHHHHHHHHhCCCeEEee
Q 015657          171 --GAALSVKEVSGKPIKLVG  188 (403)
Q Consensus       171 --~~~~~~~~~~g~pi~fig  188 (403)
                        ..+.......+.|+..+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~vS  188 (535)
T 3dpu_A          169 EQKKINERFPAIENRFHRIS  188 (535)
T ss_dssp             CHHHHHHHCGGGTTCEEECC
T ss_pred             CHHHHHHHHHhcCCceEEEe
Confidence              223334445677775543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.32  E-value=0.00049  Score=59.00  Aligned_cols=39  Identities=18%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +..+++++|++|+||||++..++..+...|+++..+++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~   73 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA   73 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence            456789999999999999999999998888888888765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.32  E-value=0.00022  Score=69.79  Aligned_cols=82  Identities=12%  Similarity=0.158  Sum_probs=43.1

Q ss_pred             CcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEEEeccc-----H-HHHHHHH---HHhhhc--CCeeEEEEcc
Q 015657           98 VDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMT-----G-QEAAALV---TTFNIE--IGITGAILTK  163 (403)
Q Consensus        98 ~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllVvda~~-----g-~~~~~~~---~~~~~~--~~i~GvIlNk  163 (403)
                      ..++|+||||....   ...+....  +..+-.++.+++|+|+..     . ++.....   ..+...  -...-+|+||
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~f--l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK  283 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQF--LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANK  283 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHH--HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEEC
T ss_pred             ceEEEecCCCCcccccccchhHHHH--HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEEC
Confidence            68999999996421   11121111  111123588899999853     2 2222222   222211  1234589999


Q ss_pred             CCCCCchhHHHHHHHHhC
Q 015657          164 LDGDSRGGAALSVKEVSG  181 (403)
Q Consensus       164 ~D~~~~~~~~~~~~~~~g  181 (403)
                      +|.......+..+.+.++
T Consensus       284 ~Dl~~~~e~~~~l~~~l~  301 (342)
T 1lnz_A          284 MDMPEAAENLEAFKEKLT  301 (342)
T ss_dssp             TTSTTHHHHHHHHHHHCC
T ss_pred             ccCCCCHHHHHHHHHHhh
Confidence            997654444455555554

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.31  E-value=0.0065  Score=52.48  Aligned_cols=19  Identities=42%  Similarity=0.676  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...|.
T Consensus         4 i~v~G~~~~GKSsli~~l~   22 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLT   22 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7889999999999998776

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.30  E-value=0.0036  Score=55.52  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +...++.+|+++|.+||||||++..|+..+   |.  .++++|
T Consensus        10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d   47 (203)
T 1ukz_A           10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG   47 (203)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence            445678999999999999999998888654   43  466766

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.30  E-value=2.4e-05  Score=69.62  Aligned_cols=65  Identities=15%  Similarity=0.113  Sum_probs=33.7

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||.........      ...-..+.+++|+|+.........   ...+..   .-...-+|+||+|..
T Consensus        81 ~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~  151 (199)
T 3l0i_B           81 TIKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT  151 (199)
T ss_dssp             EEEEEEECCTTCTTCCCCSC------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred             EEEEEEEECCCcHhHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence            46899999999643211100      011235888999998654332222   222221   112344788999964

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.29  E-value=0.00068  Score=58.93  Aligned_cols=111  Identities=21%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+...|+++|.+||||||+...|.      +.+.     ..+.|.           .+......                
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~------~~~~-----~~~~~t-----------~~~~~~~~----------------   57 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFN------GEDV-----DTISPT-----------LGFNIKTL----------------   57 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHT------TCCC-----SSCCCC-----------SSEEEEEE----------------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHh------cCCC-----Cccccc-----------CccceEEE----------------
Confidence            455678999999999999997776      2221     111111           11111100                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD  165 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D  165 (403)
                       ...++.+.|+||||...... .   ..  .....++.+++|+|+...   +.+......+..    .-...-+|+||+|
T Consensus        58 -~~~~~~~~~~Dt~G~~~~~~-~---~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  130 (186)
T 1ksh_A           58 -EHRGFKLNIWDVGGQKSLRS-Y---WR--NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD  130 (186)
T ss_dssp             -EETTEEEEEEEECCSHHHHT-T---GG--GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             -EECCEEEEEEECCCCHhHHH-H---HH--HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCcc
Confidence             01367899999999742111 0   00  111245889999998544   232222222211    1233558999999


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      ...
T Consensus       131 l~~  133 (186)
T 1ksh_A          131 LPG  133 (186)
T ss_dssp             STT
T ss_pred             CCC
Confidence            754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.29  E-value=0.001  Score=74.29  Aligned_cols=127  Identities=21%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +...|+++|..++||||++..|.....+.|.... .+   +  ...+.. ......|+.+.....             .+
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f-~~---~--a~lD~~-~~ErerGITIdva~v-------------~f  354 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA-RA---F--DQIDNA-PEEKARGITINTSHV-------------EY  354 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC----------------------------CCSCE-------------EE
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhcccccccc-cc---c--cccccc-cccccCceeEEEEEE-------------EE
Confidence            3466889999999999999999876655442110 00   0  001111 001112222111000             00


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HH--HHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QE--AAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~--~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ...++.+.|+||||...+    ...+  +.....+|.+++|+|+..+   +.  ....+..  ..++..-|++||+|...
T Consensus       355 ~~~~~kI~IIDTPGHedF----~~~m--i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~  426 (1289)
T 3avx_A          355 DTPTRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVD  426 (1289)
T ss_dssp             ECSSCEEEEEECCCHHHH----HHHH--HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCC
T ss_pred             cCCCEEEEEEECCChHHH----HHHH--HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeeccccc
Confidence            124688999999996432    2211  1223356899999999543   22  2222221  23332347899999764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.29  E-value=0.0015  Score=61.30  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ..|+++|.+|+||||+...|.
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            458999999999999998775

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.29  E-value=0.00018  Score=66.82  Aligned_cols=44  Identities=25%  Similarity=0.442  Sum_probs=35.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-----CCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-----~G~kVllVd~D~~r   55 (403)
                      ..++.+|+|+|.+||||||++..|+..|.-     .+++|.++++|-+-
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~   67 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   67 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence            456789999999999999999999887753     26788899999543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.28  E-value=0.0001  Score=70.44  Aligned_cols=42  Identities=21%  Similarity=0.556  Sum_probs=34.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ++.+|+|+|..||||||++..|+..|...|.++.++++|-+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            467899999999999999999999888778889999999754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.28  E-value=0.0034  Score=55.10  Aligned_cols=82  Identities=15%  Similarity=0.038  Sum_probs=44.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHH------HHHHHhhh-cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA------ALVTTFNI-EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~------~~~~~~~~-~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||...  .....   ...  ...+.+++|+|+.......      ..+..+.. .-...-+|+||+|...
T Consensus        74 ~~~~~~l~Dt~G~~~--~~~~~---~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  146 (196)
T 2atv_A           74 EVVSMEILDTAGQED--TIQRE---GHM--RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH  146 (196)
T ss_dssp             EEEEEEEEECCCCCC--CHHHH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred             EEEEEEEEECCCCCc--ccchh---hhh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence            357899999999754  11111   111  1248899999986543322      12222221 1122448999999643


Q ss_pred             c----hhHHHHHHHHhCCCe
Q 015657          169 R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi  184 (403)
                      .    ...+.......+.++
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~  166 (196)
T 2atv_A          147 SRQVSTEEGEKLATELACAF  166 (196)
T ss_dssp             GCCSCHHHHHHHHHHHTSEE
T ss_pred             ccccCHHHHHHHHHHhCCeE
Confidence            1    233444555566655

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.27  E-value=0.0006  Score=61.30  Aligned_cols=67  Identities=19%  Similarity=0.164  Sum_probs=33.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHh---hhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTF---NIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~---~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||...... +.   ...  .-.++.+++|+|...........    ..+   ....+ .-+|.||+|...
T Consensus        80 ~~~~l~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~  152 (214)
T 2j1l_A           80 KPVHLHIWDTAGQDDYDR-LR---PLF--YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRK  152 (214)
T ss_dssp             EEEEEEEEEC---------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGS
T ss_pred             EEEEEEEEECCCchhhhH-HH---HHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhc
Confidence            346789999999643211 10   011  12357889999987654433322    112   12333 348899999754


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       153 ~  153 (214)
T 2j1l_A          153 D  153 (214)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.27  E-value=0.0017  Score=65.12  Aligned_cols=40  Identities=23%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +....|.+|+++|++||||||++..|+..+     ...+|+.|..
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  292 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL  292 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence            344568999999999999999998887543     3457787754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00041  Score=68.76  Aligned_cols=122  Identities=16%  Similarity=0.255  Sum_probs=66.6

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA   86 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~   86 (403)
                      .+...+.+-..|+++|.|.|||||+-..|.      |.++.+  +| + |.+     +.....|+  +.           
T Consensus        64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt------~~~~~v--~~-~-pft-----T~~~~~g~--~~-----------  115 (376)
T 4a9a_A           64 GFDVARTGVASVGFVGFPSVGKSTLLSKLT------GTESEA--AE-Y-EFT-----TLVTVPGV--IR-----------  115 (376)
T ss_dssp             TTTBCBCSSEEEEEECCCCHHHHHHHHHHH------SBCCCG--GG-T-CSS-----CCCEEEEE--EE-----------
T ss_pred             CceEeecCCCeEEEECCCCCCHHHHHHHHh------CCCCcc--cC-C-CCc-----eeeeeeEE--EE-----------
Confidence            344455556678999999999999998887      444321  11 1 111     11111111  11           


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH----HhhhcC--Cee
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT----TFNIEI--GIT  157 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~----~~~~~~--~i~  157 (403)
                              ..+..+.++||||...-.   ..+....  +..+-.+|-+++|+|+.........+.    .+...+  ...
T Consensus       116 --------~~~~~i~l~D~pGl~~~a~~~~~~g~~~--l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~  185 (376)
T 4a9a_A          116 --------YKGAKIQMLDLPGIIDGAKDGRGRGKQV--IAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPP  185 (376)
T ss_dssp             --------ETTEEEEEEECGGGCCC-----CHHHHH--HHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCC
T ss_pred             --------eCCcEEEEEeCCCccCCchhhhHHHHHH--HHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCCh
Confidence                    246789999999986431   1121111  112223588999999965533333322    222111  233


Q ss_pred             EEEEccCCC
Q 015657          158 GAILTKLDG  166 (403)
Q Consensus       158 GvIlNk~D~  166 (403)
                      -+++||.|.
T Consensus       186 ~i~~nK~d~  194 (376)
T 4a9a_A          186 DILIKKKEK  194 (376)
T ss_dssp             CEEEEECSS
T ss_pred             hhhhhHhhh
Confidence            488999985

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.24  E-value=0.0013  Score=67.95  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=56.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc----------eE-eCC-CCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP----------VY-TAG-TEVK   81 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~----------v~-~~~-~~~~   81 (403)
                      +..+++++|++|+||||++..++..+...|.+|+++...-..    .++.......+.+          .+ ... ....
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~----~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS  355 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG  355 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH----HHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH----HHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence            457899999999999999999999888889888777754221    1221111112221          11 111 1234


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEe
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVD  104 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIID  104 (403)
                      ..+..+.++..+...+++++|+|
T Consensus       356 ~g~~q~~~~a~~l~~~p~llilD  378 (525)
T 1tf7_A          356 LEDHLQIIKSEINDFKPARIAID  378 (525)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEc
Confidence            55666666777666788999999

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.24  E-value=0.0021  Score=62.97  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~   53 (403)
                      +..++.|+|++|+||||++..|+..++..      |-+|++|+...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            45899999999999999999999877432      35878888754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.24  E-value=0.00032  Score=61.33  Aligned_cols=112  Identities=21%  Similarity=0.214  Sum_probs=61.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+..-|+++|.+||||||+...|.      +....  .   +.|.           .+......                
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~------~~~~~--~---~~~t-----------~~~~~~~~----------------   61 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH------LGDVV--T---TVPT-----------VGVNLETL----------------   61 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC------CSCCE--E---ECSS-----------TTCCEEEE----------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH------cCCCC--C---cCCC-----------CceEEEEE----------------
Confidence            455668999999999999997763      21111  1   1110           11111110                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD  165 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D  165 (403)
                       ...++.+.|+||||.........    .  ..-.++.+++|+|+...   .........+..    .-...-+|+||+|
T Consensus        62 -~~~~~~~~~~Dt~G~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  134 (189)
T 2x77_A           62 -QYKNISFEVWDLGGQTGVRPYWR----C--YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD  134 (189)
T ss_dssp             -EETTEEEEEEEECCSSSSCCCCS----S--SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTT
T ss_pred             -EECCEEEEEEECCCCHhHHHHHH----H--HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCC
Confidence             01367899999999653221100    0  11245889999998543   333333333221    1233558999999


Q ss_pred             CCCc
Q 015657          166 GDSR  169 (403)
Q Consensus       166 ~~~~  169 (403)
                      ....
T Consensus       135 l~~~  138 (189)
T 2x77_A          135 LPDA  138 (189)
T ss_dssp             STTC
T ss_pred             CcCC
Confidence            7543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.24  E-value=0.00024  Score=64.04  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=37.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~   54 (403)
                      ..++.+|+++|.+||||||++..|+..|. ..|+++.+++.|..
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            34678999999999999999999999998 77988989987743

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.23  E-value=0.0021  Score=63.36  Aligned_cols=118  Identities=19%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      .++++++|.+|+||||+...|+      |..+ .+. |.  +     ..+.    +......                 .
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~------~~~~-~~~-~~--~-----~~T~----d~~~~~i-----------------~  222 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLT------GLTQ-KVD-TK--L-----FTTM----SPKRYAI-----------------P  222 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHH------CC--------------------C----CSCEEEE-----------------E
T ss_pred             CcEEEEECCCCCCHHHHHHHHH------CCCc-ccc-CC--c-----cccc----CCEEEEE-----------------E
Confidence            4568999999999999998887      4332 111 10  0     0000    1100000                 0


Q ss_pred             hCCCcEEEEeCCCCccc-cHHhHHHHHH-HhhhcCCceEEEEEecccHH----HH----HHHHHHhhhcCCeeEEEEccC
Q 015657           95 KKNVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQ----EA----AALVTTFNIEIGITGAILTKL  164 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~-d~~l~~el~~-i~~~~~~~~vllVvda~~g~----~~----~~~~~~~~~~~~i~GvIlNk~  164 (403)
                      ..+..+.++||||.+.. ...+...... +.....++.+++|+|+....    ..    ...+..+...-...-+|.||+
T Consensus       223 ~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~  302 (364)
T 2qtf_A          223 INNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKI  302 (364)
T ss_dssp             ETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECG
T ss_pred             ECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECC
Confidence            13467899999997542 2222222211 22233468889999985432    11    122222221112345889999


Q ss_pred             CCCC
Q 015657          165 DGDS  168 (403)
Q Consensus       165 D~~~  168 (403)
                      |...
T Consensus       303 Dl~~  306 (364)
T 2qtf_A          303 DKIN  306 (364)
T ss_dssp             GGCC
T ss_pred             CCCC
Confidence            9654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.23  E-value=0.001  Score=58.61  Aligned_cols=65  Identities=18%  Similarity=0.122  Sum_probs=37.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.|+||||...... +..   .  .....+.+++|+|...........    ..+.   ...+ .-+|.||+|...
T Consensus        67 ~~~~~i~Dt~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~  138 (201)
T 2q3h_A           67 PVRLQLCDTAGQDEFDK-LRP---L--CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLRE  138 (201)
T ss_dssp             EEEEEEEECCCSTTCSS-SGG---G--GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGG
T ss_pred             EEEEEEEECCCCHHHHH-HhH---h--hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhh
Confidence            46778999999754321 100   0  122458899999986654333322    1122   2333 348899999643

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.23  E-value=0.0094  Score=57.36  Aligned_cols=171  Identities=17%  Similarity=0.187  Sum_probs=83.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc-------eEeCCCCCCHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQIA   86 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-------v~~~~~~~~~~~~~   86 (403)
                      +..+++++|..||||||+...|+...  .|+++.++..|.-. -.++.. .. ...+..       ++.......-...+
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~-i~idg~-~l-~~~~~~~~el~~gCicc~~~~~~~~~l   77 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGE-VSVDDQ-LI-GDRATQIKTLTNGCICCSRSNELEDAL   77 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCS-CCEEEE-EE-CTTSCEEEEETTSCEEECTTSCHHHHH
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcc-cCccHH-HH-hCCCCCEEEECCCceEEcccHHHHHHH
Confidence            35688999999999999998887653  68899998877321 111100 00 000001       11111111222223


Q ss_pred             HHHHHHHHhC--CCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccHHHHHHHHHH-hhhcCCeeEEE
Q 015657           87 KQGLEEAKKK--NVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTT-FNIEIGITGAI  160 (403)
Q Consensus        87 ~~~l~~~~~~--~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g~~~~~~~~~-~~~~~~i~GvI  160 (403)
                      ...+......  .+|++++|+.+.... ..+...+   .........+.++-++|+............ ........-+|
T Consensus        78 ~~l~~~~q~~~~~~~~~v~E~~~l~~p-~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il  156 (318)
T 1nij_A           78 LDLLDNLDKGNIQFDRLVIECTGMADP-GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  156 (318)
T ss_dssp             HHHHHHHHHTSCCCSEEEEEEETTCCH-HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred             HHHHhHHhcCCCCCCEEEEeCCCCCCH-HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence            3332111223  359999999886421 1111111   112222223566777888543322221111 11122344577


Q ss_pred             EccCCCCCchhHHHHHHHHh--CCCeEEeecc
Q 015657          161 LTKLDGDSRGGAALSVKEVS--GKPIKLVGRG  190 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~--g~pi~fig~g  190 (403)
                      +||.|.......+.......  +.+|.++..+
T Consensus       157 l~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~  188 (318)
T 1nij_A          157 LTKTDVAGEAEKLHERLARINARAPVYTVTHG  188 (318)
T ss_dssp             EECTTTCSCTHHHHHHHHHHCSSSCEEECCSS
T ss_pred             EECcccCCHHHHHHHHHHHhCCCCeEEEeccc
Confidence            89999664323344433333  4566555554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.22  E-value=0.0018  Score=57.38  Aligned_cols=83  Identities=10%  Similarity=-0.057  Sum_probs=43.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh----cCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI----EIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~----~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||+|.......+..   ...  -.++.+++|.|.........   ....+..    .-.+.-+|.||+|....
T Consensus        71 ~~~l~i~Dt~g~~~~~~~~~~---~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A           71 EVTLVVYDIWEQGDAGGWLRD---HCL--QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS  145 (195)
T ss_dssp             EEEEEEECCCCCSGGGHHHHH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred             EEEEEEEecCCCccchhhhHH---Hhh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence            567889999997543221111   111  13488899999865433222   2222211    11223488999996532


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+..+....+.++
T Consensus       146 ~~v~~~~~~~~a~~~~~~~  164 (195)
T 3cbq_A          146 REVSLEEGRHLAGTLSCKH  164 (195)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             CCcCHHHHHHHHHHhCCEE
Confidence                123344444555544

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.22  E-value=0.00014  Score=73.24  Aligned_cols=85  Identities=15%  Similarity=0.094  Sum_probs=44.9

Q ss_pred             cEEEEeCCCCccccHH---hHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchh--HH
Q 015657           99 DVVIVDTAGRLQIDKA---MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG--AA  173 (403)
Q Consensus        99 D~VIIDtpg~l~~d~~---l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~--~~  173 (403)
                      .+.|+||||.......   ........  ...++.+++|+|+............+...-...-+|+||+|......  ..
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~--l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~  161 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRV--FYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELK  161 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHH--HTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHH
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHH--HhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHH
Confidence            7999999997644211   11111111  22468899999994333333333333332223458999999654322  22


Q ss_pred             HHHHHHhCCCeE
Q 015657          174 LSVKEVSGKPIK  185 (403)
Q Consensus       174 ~~~~~~~g~pi~  185 (403)
                      ..+.+..+.|+.
T Consensus       162 ~~l~~~~g~~v~  173 (423)
T 3qq5_A          162 GLYESRYEAKVL  173 (423)
T ss_dssp             HHSSCCTTCCCC
T ss_pred             HHHHHHcCCCEE
Confidence            333334455553

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.21  E-value=0.001  Score=78.02  Aligned_cols=87  Identities=21%  Similarity=0.335  Sum_probs=57.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhcc-CCceEeCCCCCCHHHHHHHHH-
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQV-GVPVYTAGTEVKPSQIAKQGL-   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~-gv~v~~~~~~~~~~~~~~~~l-   90 (403)
                      +++++.++|++|+||||+|.+++....++|.+|++++++-. .+..   ...++... .+.+..    .++.+.+.+.+ 
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~----~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQ----PDTGEQALEICD 1498 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEEC----CSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchhceeec----CChHHHHHHHHH
Confidence            57899999999999999999999999999999999998732 2222   22222111 122221    22333332333 


Q ss_pred             HHHHhCCCcEEEEeCCC
Q 015657           91 EEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg  107 (403)
                      ..++...+|+||||.-.
T Consensus      1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHHHTCCSEEEESCGG
T ss_pred             HHHhcCCCCEEEEcChh
Confidence            33445789999999974

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.21  E-value=0.00058  Score=62.37  Aligned_cols=39  Identities=8%  Similarity=0.032  Sum_probs=35.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      .+..+.+++|.-|+||||.+..++..+..+|++|+++..
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~   64 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP   64 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence            445889999999999999999999999999999999863

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=97.21  E-value=0.0036  Score=64.70  Aligned_cols=118  Identities=19%  Similarity=0.325  Sum_probs=74.5

Q ss_pred             CEEEEEE-cC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhh-------------------HHHHHHhhhccC
Q 015657           15 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAA-------------------IDQLVILGEQVG   70 (403)
Q Consensus        15 ~~iI~v~-G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~-------------------~~~l~~~~~~~g   70 (403)
                      .+.|+++ |. +++||+++++.|++.|+++|++|..+..|||-   |..                   .++.. .....+
T Consensus         3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~~~-~~~~~~   81 (545)
T 1s1m_A            3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGH-YERFIR   81 (545)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHH-HHHHCS
T ss_pred             ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECCCCCeehhhhcc-ceeeec
Confidence            4678898 77 99999999999999999999999999999652   111                   01100 000111


Q ss_pred             CceEe------------------CCCCC----C----HHHHHHHHHHHHHhCCCcEEEEeCCCCccc--cHHhHHHHHHH
Q 015657           71 VPVYT------------------AGTEV----K----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDV  122 (403)
Q Consensus        71 v~v~~------------------~~~~~----~----~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~--d~~l~~el~~i  122 (403)
                      +.+-+                  .+.+.    .    -.+.+++.+..+. .+||+|||+.+|...+  +-.++..+.++
T Consensus        82 ~~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~i~e~~gt~~di~~~~~~~~~~q~  160 (545)
T 1s1m_A           82 TKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGG-EGHDVVLVEIGGTVGDIESLPFLEAIRQM  160 (545)
T ss_dssp             SCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHH-TTCSEEEEEECSCTTSSTTHHHHHHHHHH
T ss_pred             eeecCCCCeeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHh-ccCCEEEEECCCChhhhhChHHHHHHHHH
Confidence            10000                  00111    1    1223466677764 6899999999988754  44566677777


Q ss_pred             hhhcCCceEEEE
Q 015657          123 KRVLNPTEVLLV  134 (403)
Q Consensus       123 ~~~~~~~~vllV  134 (403)
                      ...+....++++
T Consensus       161 ~~~~~~~~~~~~  172 (545)
T 1s1m_A          161 AVEIGREHTLFM  172 (545)
T ss_dssp             HHHHCTTSEEEE
T ss_pred             hHhhCcCcEEEE
Confidence            777665555443

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.21  E-value=0.00086  Score=66.98  Aligned_cols=64  Identities=16%  Similarity=0.126  Sum_probs=36.9

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc----HHHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----GQEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~----g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      +.+.|+||||...    ....+  +..+..+|.+++|+|+..    .+... .+..+. ......-+++||+|...
T Consensus        83 ~~i~iiDtPGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~~~~~iivviNK~Dl~~  151 (410)
T 1kk1_A           83 RRVSFIDAPGHEA----LMTTM--LAGASLMDGAILVIAANEPCPRPQTRE-HLMALQIIGQKNIIIAQNKIELVD  151 (410)
T ss_dssp             EEEEEEECSSHHH----HHHHH--HHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHHTCCCEEEEEECGGGSC
T ss_pred             cEEEEEECCChHH----HHHHH--HhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcCCCcEEEEEECccCCC
Confidence            6799999999642    22221  122234689999999963    33322 222221 22333447799999754

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=97.20  E-value=0.0036  Score=64.80  Aligned_cols=119  Identities=13%  Similarity=0.278  Sum_probs=74.9

Q ss_pred             CEEEEEE-cC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhh-------------------HHHHHHhhhccC
Q 015657           15 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAA-------------------IDQLVILGEQVG   70 (403)
Q Consensus        15 ~~iI~v~-G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~-------------------~~~l~~~~~~~g   70 (403)
                      .+.|+|+ |. +++||+++++.|++.|+++|++|..+..|||-   |..                   .++-. ...-.+
T Consensus        12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~-~~~~~~   90 (550)
T 1vco_A           12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGH-YERFLD   90 (550)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHH-HHHHHT
T ss_pred             eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECCCCceehhhhcc-HHhcCC
Confidence            4788999 77 99999999999999999999999999999652   111                   00000 000000


Q ss_pred             C------------------------ceEeCCCCC--CHHHHHHHHHHHHHh-CCCcEEEEeCCCCccc--cHHhHHHHHH
Q 015657           71 V------------------------PVYTAGTEV--KPSQIAKQGLEEAKK-KNVDVVIVDTAGRLQI--DKAMMDELKD  121 (403)
Q Consensus        71 v------------------------~v~~~~~~~--~~~~~~~~~l~~~~~-~~~D~VIIDtpg~l~~--d~~l~~el~~  121 (403)
                      +                        +.+......  .-.+.+++.+..+.. .+||+|||+.+|...+  .-.++..+.+
T Consensus        91 ~~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~i~e~~gt~~di~~~~~~~~~rq  170 (550)
T 1vco_A           91 MDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVVEVGGTVGDIESLPFLEAIRQ  170 (550)
T ss_dssp             SCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTSSTTHHHHHHHHT
T ss_pred             cccCCCCCeeccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhcccCCCEEEEECCCChhHhhhHHHHHHHHH
Confidence            0                        001000011  123345666766642 2899999999888764  4456777777


Q ss_pred             HhhhcCCceEEEE
Q 015657          122 VKRVLNPTEVLLV  134 (403)
Q Consensus       122 i~~~~~~~~vllV  134 (403)
                      +...+....++++
T Consensus       171 ~~~~~~~~~~~~~  183 (550)
T 1vco_A          171 FRFDEGEGNTLYL  183 (550)
T ss_dssp             HHHHHCTTSEEEE
T ss_pred             HhHhhCcCCEEEE
Confidence            7777765555444

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.19  E-value=0.011  Score=54.02  Aligned_cols=42  Identities=29%  Similarity=0.428  Sum_probs=32.7

Q ss_pred             ccccc-CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657            7 ELVFA-KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus         7 ~l~~~-~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      ++.+. ..++.+|++.|++||||||++..|+..|.. |..|...
T Consensus        17 ~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           17 NLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             ---CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            34443 336789999999999999999999999988 8888544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.17  E-value=0.00092  Score=77.47  Aligned_cols=152  Identities=18%  Similarity=0.231  Sum_probs=84.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCce---EeCCCCCCHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPV---YTAGTEVKPSQIAKQG   89 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~v---~~~~~~~~~~~~~~~~   89 (403)
                      +.++|-+.|+.|+||||+|.++++...++|..+++||+.-. .|.+       ....|+++   +...+ ....+.+.-+
T Consensus      1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~-------~~~~Gv~~~~l~~~~p-~~~e~~l~~~ 1501 (1706)
T 3cmw_A         1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLGVDIDNLLCSQP-DTGEQALEIC 1501 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-------HHHTTCCGGGCEEECC-SSHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH-------HHHcCCCHHHeEEeCC-CcHHHHHHHH
Confidence            34899999999999999999999999999999999998622 1222       23334432   22211 1223333333


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCC---
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDG---  166 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~---  166 (403)
                      -..+++..+|+|+||....+....+.-.++-+         ..+=+.+..-..+.+.+..+....+...+++|.+..   
T Consensus      1502 ~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~---------~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~ 1572 (1706)
T 3cmw_A         1502 DALARSGAVDVIVVDSVAALTPKAEIEGEIGD---------SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 1572 (1706)
T ss_dssp             HHHHHHTCCSEEEESCSTTCCCTTTTC----------------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC----
T ss_pred             HHHHHcCCCCEEEEccHHhCCccccccccccc---------cchhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccc
Confidence            33445678999999997766432222211100         011111111122233333444455777788888752   


Q ss_pred             -------CCchhHHHHHHHHhCC
Q 015657          167 -------DSRGGAALSVKEVSGK  182 (403)
Q Consensus       167 -------~~~~~~~~~~~~~~g~  182 (403)
                             .+.+|.++..-....+
T Consensus      1573 ~~~~~~~~~~~g~al~~~~~~r~ 1595 (1706)
T 3cmw_A         1573 VMFGNPETTTGGNALKFYASVRL 1595 (1706)
T ss_dssp             ----CCCCBSSCSHHHHHEEEEE
T ss_pred             eecCCCccccCcceeeeeeeeee
Confidence                   3556666655443333

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.16  E-value=0.00064  Score=73.12  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=43.4

Q ss_pred             CCcEEEEeCCCCcccc-----H---HhHHHH-HHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccC
Q 015657           97 NVDVVIVDTAGRLQID-----K---AMMDEL-KDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL  164 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d-----~---~l~~el-~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~  164 (403)
                      ..+++||||||.....     .   ....++ ..... -.++-+++|+|+...   ++....+..+...-...-+|+||+
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKi  227 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL  227 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECT
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCc
Confidence            4579999999987621     1   112221 11211 234677889998532   344455555554444556899999


Q ss_pred             CCCCchh
Q 015657          165 DGDSRGG  171 (403)
Q Consensus       165 D~~~~~~  171 (403)
                      |......
T Consensus       228 Dlv~~~~  234 (772)
T 3zvr_A          228 DLMDEGT  234 (772)
T ss_dssp             TSSCTTC
T ss_pred             ccCCcch
Confidence            9765443

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.16  E-value=0.00044  Score=61.81  Aligned_cols=38  Identities=34%  Similarity=0.481  Sum_probs=33.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      .++.+|+++|.+||||||++..|+..|...|+.|..+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~   44 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   44 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence            35678999999999999999999999998898885443

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.16  E-value=0.0016  Score=68.13  Aligned_cols=36  Identities=28%  Similarity=0.423  Sum_probs=32.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      ..+++++|.+|+||||++..++..+...|++|+++.
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            467899999999999999999999999999998765

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.15  E-value=0.0046  Score=55.01  Aligned_cols=38  Identities=24%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .++.+|+++|++||||||++..|+..+   |  ..+++.|...
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~   64 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFH   64 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccccc
Confidence            456789999999999999999998777   4  3467777654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.14  E-value=0.00048  Score=70.16  Aligned_cols=70  Identities=20%  Similarity=0.264  Sum_probs=32.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHH---HHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el---~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||...... .....   ......-.++.+++|+|+...  ............  ...-+|+||+|...
T Consensus       270 ~g~~v~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~  344 (462)
T 3geh_A          270 GGIPVQVLDTAGIRETSD-QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVE  344 (462)
T ss_dssp             TTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSC
T ss_pred             CCEEEEEEECCccccchh-HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCc
Confidence            467899999999743211 11110   111122346889999998533  222223333322  24458999999653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.14  E-value=0.0016  Score=57.05  Aligned_cols=65  Identities=14%  Similarity=0.064  Sum_probs=37.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGDS  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~~  168 (403)
                      .+.+.|+||||....... ..     ......+.+++|+|...........    ..+.   ...+ .-+|.||+|...
T Consensus        65 ~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~  136 (194)
T 2atx_A           65 QYLLGLYDTAGQEDYDRL-RP-----LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD  136 (194)
T ss_dssp             EEEEEEECCCCSSSSTTT-GG-----GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred             EEEEEEEECCCCcchhHH-HH-----HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence            478899999997543211 00     1122358899999986554332221    2222   2333 448999999754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.13  E-value=0.0011  Score=69.62  Aligned_cols=62  Identities=16%  Similarity=0.152  Sum_probs=36.6

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      +.+.|+||||...+.....      .....+|.+++|+|+..+   ++. ..+.... ..++ .-+++||+|..
T Consensus        70 ~~i~liDTPGhe~F~~~~~------r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~~~vP-iIVViNKiDl~  135 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLRK------RGGALADLAILIVDINEGFKPQTQ-EALNILRMYRTP-FVVAANKIDRI  135 (594)
T ss_dssp             CEEEEECCCTTSCCTTSBC------SSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHTTCC-EEEEEECGGGS
T ss_pred             CCEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCccHhHH-HHHHHHHHcCCe-EEEEecccccc
Confidence            4699999999754422111      112235889999999663   332 2222222 2333 45899999964

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.11  E-value=0.0023  Score=64.47  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=19.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .+..++++|.+||||||+...|.
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~  201 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAIL  201 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHh
Confidence            34668999999999999998877

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.08  E-value=0.00066  Score=60.79  Aligned_cols=65  Identities=15%  Similarity=0.129  Sum_probs=36.4

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      +.+.|+||||...... +..   .  ....++.+++|+|+.........      +......-...-+|+||+|...
T Consensus        61 ~~~~l~Dt~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (218)
T 4djt_A           61 IKFNVWDTAGQEKKAV-LKD---V--YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN  131 (218)
T ss_dssp             EEEEEEEECSGGGTSC-CCH---H--HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred             EEEEEEecCCchhhch-HHH---H--HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            6799999999643221 111   0  11235889999999765433222      1112112123458999999754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.07  E-value=0.00064  Score=61.20  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=43.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh---hcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~---~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||.-.......    ..  ....+.+++|+|..........   ...+.   ...+ .-+|+||+|....
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  134 (221)
T 3gj0_A           62 GPIKFNVWDTAGQEKFGGLRD----GY--YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR  134 (221)
T ss_dssp             EEEEEEEEEECSGGGTSCCCH----HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred             EEEEEEEEeCCChHHHhHHHH----HH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence            457899999999643211111    11  1135889999999665433222   12222   2333 3489999996432


Q ss_pred             h--hHHHHHHHHhCCCe
Q 015657          170 G--GAALSVKEVSGKPI  184 (403)
Q Consensus       170 ~--~~~~~~~~~~g~pi  184 (403)
                      .  ..........+.++
T Consensus       135 ~~~~~~~~~~~~~~~~~  151 (221)
T 3gj0_A          135 KVKAKSIVFHRKKNLQY  151 (221)
T ss_dssp             SSCGGGCCHHHHHTCEE
T ss_pred             cccHHHHHHHHHcCCEE
Confidence            1  12223344455554

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.06  E-value=0.0017  Score=76.31  Aligned_cols=89  Identities=21%  Similarity=0.361  Sum_probs=58.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l   90 (403)
                      +.+++.|.|++|+||||++.++|...++.|.+|+++++.-......      ....+++   ++... .....+ +...+
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~------a~~lGvd~~~L~I~~-~~~~e~-il~~~  453 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY------ARKLGVDIDNLLCSQ-PDTGEQ-ALEIC  453 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH------HHHTTCCTTTCEEEC-CSSHHH-HHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHH------HHHcCCCHHHeEEeC-CCCHHH-HHHHH
Confidence            5689999999999999999999999999999999999885332221      2222322   11111 122233 33333


Q ss_pred             HH-HHhCCCcEEEEeCCCCcc
Q 015657           91 EE-AKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~-~~~~~~D~VIIDtpg~l~  110 (403)
                      +. .+...+++||||.-..+.
T Consensus       454 ~~lv~~~~~~lIVIDSL~al~  474 (2050)
T 3cmu_A          454 DALARSGAVDVIVVDSVAALT  474 (2050)
T ss_dssp             HHHHHHTCCSEEEESCGGGCC
T ss_pred             HHHHHhcCCcEEEECCHHHhh
Confidence            32 234689999999866554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.06  E-value=0.0014  Score=57.73  Aligned_cols=69  Identities=22%  Similarity=0.288  Sum_probs=37.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHH---HHHh---hhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL---VTTF---NIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~---~~~~---~~~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||........... ...  .-.++.+++|+|....  +.....   +...   .... ..-+|.||+|..
T Consensus        67 ~~~~l~i~Dt~G~~~~~~~~~~~-~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~-piilv~nK~Dl~  142 (196)
T 3llu_A           67 SFVNFQIWDFPGQMDFFDPTFDY-EMI--FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM-NFEVFIHKVDGL  142 (196)
T ss_dssp             TSCCEEEEECCSSCCTTCTTCCH-HHH--HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTC-EEEEEEECGGGS
T ss_pred             CeeEEEEEECCCCHHHHhhhhhc-ccc--cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCC-cEEEEEeccccC
Confidence            46889999999975432111000 011  1135889999999653  222222   2222   1122 344888999954


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       143 ~  143 (196)
T 3llu_A          143 S  143 (196)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.05  E-value=0.00089  Score=64.29  Aligned_cols=39  Identities=28%  Similarity=0.342  Sum_probs=34.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+..++++|++|+||||++..++..+...+.++..++++
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            346689999999999999999999998888999988876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.05  E-value=0.00069  Score=60.92  Aligned_cols=42  Identities=33%  Similarity=0.455  Sum_probs=36.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .++.+++|+|++||||||++..|+..+...|..+..|..|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            567899999999999999999999999866777888888754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.04  E-value=0.00061  Score=70.01  Aligned_cols=109  Identities=22%  Similarity=0.266  Sum_probs=59.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      ++.+|++.|..++||||+...|...-...+.                       ..++.........             
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-----------------------~~GIT~~i~~~~v-------------   46 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-----------------------AGGITQHIGAYHV-------------   46 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-----------------------BCCCCCCSSCCCC-------------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcccc-----------------------CCCeeEeEEEEEE-------------
Confidence            4567899999999999999887642211111                       0111100000000             


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---H--HHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~--~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      ..+++.+.|+||||.-.+.....      .....+|.+++|+|+..+   +  +....+.  ...++ .-+++||+|..
T Consensus        47 ~~~~~~i~~iDTPGhe~f~~~~~------~~~~~aD~aILVVda~~g~~~qT~e~l~~~~--~~~vP-iIVviNKiDl~  116 (501)
T 1zo1_I           47 ETENGMITFLDTPGHAAFTSMRA------RGAQATDIVVLVVAADDGVMPQTIEAIQHAK--AAQVP-VVVAVNKIDKP  116 (501)
T ss_dssp             CTTSSCCCEECCCTTTCCTTSBC------SSSBSCSSEEEEEETTTBSCTTTHHHHHHHH--HTTCC-EEEEEECSSSS
T ss_pred             EECCEEEEEEECCCcHHHHHHHH------HHHhhCCEEEEEeecccCccHHHHHHHHHHH--hcCce-EEEEEEecccc
Confidence            01456789999999754322111      112235788999998542   2  2222222  22344 45889999964

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.03  E-value=0.00046  Score=61.38  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +++|+|.+||||||+|..|+..    |.+|++++..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~   32 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIATS   32 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence            3789999999999999988744    7788888875

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.03  E-value=0.0014  Score=75.96  Aligned_cols=89  Identities=20%  Similarity=0.352  Sum_probs=59.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc---eEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP---VYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~---v~~~~~~~~~~~~~~~~l   90 (403)
                      +.+++.|+|.+|+||||++.+++...++.|.+|++++++-......      ....+++   ++.... ... +.+...+
T Consensus       382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~------a~~lGvd~~~L~i~~~-~~~-e~~l~~l  453 (1706)
T 3cmw_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY------ARKLGVDIDNLLCSQP-DTG-EQALEIC  453 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH------HHHTTCCGGGCEEECC-SSH-HHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH------HHHcCCCHHHeEEcCC-CCH-HHHHHHH
Confidence            4688999999999999999999999999999999999985433221      2222332   111111 122 3233333


Q ss_pred             HH-HHhCCCcEEEEeCCCCcc
Q 015657           91 EE-AKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        91 ~~-~~~~~~D~VIIDtpg~l~  110 (403)
                      .. ++..++++||||....+.
T Consensus       454 ~~lv~~~~~~lVVIDSL~al~  474 (1706)
T 3cmw_A          454 DALARSGAVDVIVVDSVAALT  474 (1706)
T ss_dssp             HHHHHHTCCSEEEESCSTTCC
T ss_pred             HHHHHhcCCCEEEECCHHHhh
Confidence            32 335689999999977664

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.03  E-value=0.0013  Score=57.16  Aligned_cols=67  Identities=13%  Similarity=0.112  Sum_probs=37.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhhh--cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNI--EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~~--~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||...... +.   .  ......+.+++|+|...........    ..+..  .-.+.-+|.||+|...
T Consensus        53 ~~~~~~i~Dt~G~~~~~~-~~---~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           53 QRIELSLWDTSGSPYYDN-VR---P--LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             CEEEEEEEEECCSGGGTT-TG---G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             EEEEEEEEECCCChhhhh-hH---H--hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence            357899999999643211 10   0  0112457889999997654433321    11211  1123458889999753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.02  E-value=0.00044  Score=66.11  Aligned_cols=43  Identities=26%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEE-eccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLV-AGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G--~kVllV-d~D~~   54 (403)
                      ..++.+|+|+|.+||||||++..|+..|...|  .++.++ ..|.+
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            45789999999999999999999999998654  444444 88865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.01  E-value=0.00071  Score=65.64  Aligned_cols=44  Identities=27%  Similarity=0.367  Sum_probs=37.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~r   55 (403)
                      ..+|.+|+|+|++||||||++..|+..+..  .+.+|.++..|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            456889999999999999999999988874  35689999999753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.01  E-value=0.00069  Score=60.28  Aligned_cols=35  Identities=20%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      ++.+|+++|.+||||||++..|+..|...| +|...
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~   37 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT   37 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence            357899999999999999999999998777 66443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.01  E-value=0.00039  Score=62.09  Aligned_cols=41  Identities=32%  Similarity=0.460  Sum_probs=28.2

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++++.-.++++|+++|++||||||++..|+..+   |..  +++.|
T Consensus        17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d   57 (199)
T 3vaa_A           17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD   57 (199)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             ceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence            455555567889999999999999999999877   443  45666

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.01  E-value=0.00066  Score=60.35  Aligned_cols=38  Identities=37%  Similarity=0.377  Sum_probs=34.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +..++++|++|+||||++..++..+...|.+|.++.+.
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~   91 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP   91 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence            36789999999999999999999999889999888764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.01  E-value=0.0014  Score=65.35  Aligned_cols=64  Identities=19%  Similarity=0.207  Sum_probs=37.1

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc----HHHHHHHHHHhh-hcCCeeEEEEccCCCCC
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----GQEAAALVTTFN-IEIGITGAILTKLDGDS  168 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~----g~~~~~~~~~~~-~~~~i~GvIlNk~D~~~  168 (403)
                      +.+.|+||||...    ....+  +..+..+|.+++|+|+..    .+.... +..+. ......-+++||+|...
T Consensus        81 ~~i~iiDtPGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~~l~~~~iivv~NK~Dl~~  149 (408)
T 1s0u_A           81 RRVSFVDSPGHET----LMATM--LSGASLMDGAILVIAANEPCPQPQTKEH-LMALEILGIDKIIIVQNKIDLVD  149 (408)
T ss_dssp             EEEEEEECSSHHH----HHHHH--HTTCSCCSEEEEEEETTSCSSCHHHHHH-HHHHHHTTCCCEEEEEECTTSSC
T ss_pred             cEEEEEECCCHHH----HHHHH--HHhHhhCCEEEEEEECCCCCCCchhHHH-HHHHHHcCCCeEEEEEEccCCCC
Confidence            6799999999532    22211  222334689999999963    333322 22221 22333458999999653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.00  E-value=0.00078  Score=59.05  Aligned_cols=34  Identities=41%  Similarity=0.618  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      +|+++|.+||||||++..|+..|...|..|...+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            6899999999999999999999988888876443

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.00  E-value=0.0015  Score=57.84  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=37.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH-------HHHhhhcCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-------VTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~-------~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.|+||||...... +.    . ...-..+.+++|+|..........       +.......+ .-+|+||+|....
T Consensus        72 ~~~l~i~Dt~G~~~~~~-~~----~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~  144 (201)
T 2gco_A           72 QVELALWDTAGQEDYDR-LR----P-LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQD  144 (201)
T ss_dssp             EEEEEEECCCCSGGGTT-TG----G-GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTC
T ss_pred             EEEEEEEECCCchhHHH-HH----H-HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcC
Confidence            46899999999643211 00    0 012245888999998654333222       112222333 3489999997543

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.99  E-value=0.00049  Score=59.78  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +.+|+++|++||||||++..|+..|   +.....++.|
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D   37 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD   37 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence            5689999999999999998888665   4455556666

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=96.99  E-value=0.00074  Score=65.52  Aligned_cols=67  Identities=19%  Similarity=0.209  Sum_probs=34.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.|+||||....... .   ...  .-..+.+++|+|+...   ..+......+..    .-.+.-+|+||+|...
T Consensus       207 ~~~~l~i~Dt~G~~~~~~~-~---~~~--~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~  280 (329)
T 3o47_A          207 KNISFTVWDVGGQDKIRPL-W---RHY--FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN  280 (329)
T ss_dssp             TTEEEEEEECC-----CCS-H---HHH--HTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             CcEEEEEEECCCCHhHHHH-H---HHH--hccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence            4678999999995432211 1   111  1134788999998432   222222222211    1223458899999754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.98  E-value=0.00089  Score=59.75  Aligned_cols=37  Identities=30%  Similarity=0.427  Sum_probs=32.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      ++.+|+++|.+||||||++..|+..|...+..+.++.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   45 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY   45 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            4678999999999999999999999988888885443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.97  E-value=0.0034  Score=54.93  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=43.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhh-------hcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN-------IEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~-------~~~~i~GvIlNk~D  165 (403)
                      ..+.+.|+||||...... +    ...  ....+.+++|.|..........   ...+.       ...+ .-+|.||+|
T Consensus        67 ~~~~l~i~Dt~G~~~~~~-~----~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D  138 (187)
T 3c5c_A           67 QPVHLRVMDTADLDTPRN-C----ERY--LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLD  138 (187)
T ss_dssp             EEEEEEEEECCC---CCC-T----HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGG
T ss_pred             EEEEEEEEECCCCCcchh-H----HHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcc
Confidence            357889999999643321 1    111  1235888999998654333222   12221       1233 448999999


Q ss_pred             CCC----chhHHHHHHHHhCCCe
Q 015657          166 GDS----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       166 ~~~----~~~~~~~~~~~~g~pi  184 (403)
                      ...    ....+.......+.++
T Consensus       139 l~~~~~v~~~~~~~~~~~~~~~~  161 (187)
T 3c5c_A          139 MAQYRQVTKAEGVALAGRFGCLF  161 (187)
T ss_dssp             GGGGCSSCHHHHHHHHHHHTCEE
T ss_pred             hhhcCccCHHHHHHHHHHcCCcE
Confidence            642    1233455566667655

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.97  E-value=0.036  Score=53.47  Aligned_cols=28  Identities=36%  Similarity=0.477  Sum_probs=24.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      .+..++++|++|+||||++..++..+..
T Consensus        37 ~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           37 IHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567899999999999999999988753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.95  E-value=0.00061  Score=71.79  Aligned_cols=42  Identities=45%  Similarity=0.709  Sum_probs=37.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ++.+|+++|.+||||||++..|+..|..+|+.+..+|.|..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR   92 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR   92 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence            678999999999999999999999999899999888877443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.95  E-value=0.0012  Score=58.91  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||....... .    . ......+.+++|+|...........    ..+.   ...+ .-+|.||+|..
T Consensus        55 ~~~~~~i~Dt~G~~~~~~~-~----~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~  126 (212)
T 2j0v_A           55 QIVNLGLWDTAGQEDYSRL-R----P-LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLR  126 (212)
T ss_dssp             CEEEEEEECCCCCCCCCC-------C-GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred             EEEEEEEEECCCcHHHHHH-H----H-hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhh
Confidence            3578999999997543211 0    0 0122458899999986654433322    1222   2333 34899999954

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.95  E-value=0.0046  Score=59.87  Aligned_cols=96  Identities=21%  Similarity=0.276  Sum_probs=55.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI   85 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~   85 (403)
                      ...+..++++|++|+||||++..++..+...      +..+..++|....... .-+..+....+...-  .......+.
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~l~~~~~--~~~~~~~~~  117 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY-RVASAIAEAVGVRVP--FTGLSVGEV  117 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH-HHHHHHHHHHSCCCC--SSCCCHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH-HHHHHHHHHhCCCCC--CCCCCHHHH
Confidence            3556789999999999999999999988764      5667777765443211 111111222222211  112223344


Q ss_pred             HHHHHHHHHh-CCCcEEEEeCCCCcc
Q 015657           86 AKQGLEEAKK-KNVDVVIVDTAGRLQ  110 (403)
Q Consensus        86 ~~~~l~~~~~-~~~D~VIIDtpg~l~  110 (403)
                      .......+.. ....++|||=...+.
T Consensus       118 ~~~l~~~l~~~~~~~vlilDEi~~l~  143 (387)
T 2v1u_A          118 YERLVKRLSRLRGIYIIVLDEIDFLP  143 (387)
T ss_dssp             HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred             HHHHHHHHhccCCeEEEEEccHhhhc
Confidence            4444444432 225589999877654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.94  E-value=0.016  Score=49.63  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=19.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +.--|+++|.+||||||+...|.
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~   28 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFL   28 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34558899999999999997776

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.94  E-value=0.0092  Score=54.79  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..++-++++|++|+||||++..+|..+   +.++..+++.......                    .......+...+..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~   93 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI--------------------GGLGAARVRSLFKE   93 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS--------------------TTHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc--------------------cChhHHHHHHHHHH
Confidence            456778999999999999999998765   5566666665221100                    00122334455555


Q ss_pred             HHhCCCcEEEEeCCCCc
Q 015657           93 AKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l  109 (403)
                      +......+++||-...+
T Consensus        94 a~~~~~~vl~iDeid~l  110 (262)
T 2qz4_A           94 ARARAPCIVYIDEIDAV  110 (262)
T ss_dssp             HHHTCSEEEEEECC---
T ss_pred             HHhcCCeEEEEeCcchh
Confidence            55456789999987655

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.93  E-value=0.0021  Score=62.65  Aligned_cols=41  Identities=27%  Similarity=0.238  Sum_probs=34.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC--------CCcEEEEecc
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--------GKSCMLVAGD   52 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~--------G~kVllVd~D   52 (403)
                      ...+..++++|++|+||||++..++..+...        +..++.++|.
T Consensus        42 ~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           42 NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence            3456789999999999999999999988765        7788877765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.92  E-value=0.00065  Score=58.71  Aligned_cols=66  Identities=18%  Similarity=0.132  Sum_probs=37.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhh---hcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~---~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||...... +.    . ...-.++.+++|+|...........    ..+.   ...+ .-+|+||+|...
T Consensus        51 ~~~~~~i~Dt~G~~~~~~-~~----~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~  123 (186)
T 1mh1_A           51 KPVNLGLWDTAGQEDYDR-LR----P-LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD  123 (186)
T ss_dssp             EEEEEEEECCCCSGGGTT-TG----G-GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHT
T ss_pred             EEEEEEEEECCCCHhHHH-HH----H-HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccc
Confidence            356788999999743211 00    0 0112458889999986654333221    2222   2333 348899999643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.92  E-value=0.00063  Score=60.66  Aligned_cols=67  Identities=18%  Similarity=0.076  Sum_probs=37.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhhhc--CCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNIE--IGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~~~--~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||.-......    .  ...-.++.+++|+|+..........    ..+...  -...-+|+||+|...
T Consensus        76 ~~~~l~i~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  148 (204)
T 4gzl_A           76 KPVNLGLWDTAGLEDYDRLR----P--LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD  148 (204)
T ss_dssp             CEEEEEEEEECCSGGGTTTG----G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred             EEEEEEEEECCCchhhHHHH----H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence            35677899999974321110    0  0122458899999997654443332    122211  123458899999643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.92  E-value=0.00093  Score=59.79  Aligned_cols=39  Identities=38%  Similarity=0.485  Sum_probs=32.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .++.+++++|+.||||||++..|+..+..   ++.+++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~   42 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY   42 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence            46789999999999999999999877643   5889998864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.91  E-value=0.00081  Score=58.19  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=27.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      |.+|+++|++||||||++..|+..    .....+++.|.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~   36 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDD   36 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence            578999999999999999888862    23455677663

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.91  E-value=0.0013  Score=58.83  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=37.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHhhh--cCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFNI--EIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~~~--~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||...... +.   ..  ..-.++.+++|+|...........    ..+..  .-...-+|.||+|..
T Consensus        74 ~~~~l~i~Dt~G~~~~~~-~~---~~--~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  145 (205)
T 1gwn_A           74 QRIELSLWDTSGSPYYDN-VR---PL--SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR  145 (205)
T ss_dssp             SEEEEEEEEECCSGGGTT-TG---GG--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEEeCCCcHhhhH-HH---Hh--hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence            357899999999643211 10   00  112458899999997654433321    12221  112345888999975

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.87  E-value=0.0011  Score=59.25  Aligned_cols=44  Identities=30%  Similarity=0.494  Sum_probs=33.2

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .+.-.-.++.+|+++|.+||||||++..|+..+.    .+.+++.|.+
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~   56 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF   56 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence            4444556678999999999999999987773321    5788999854

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.87  E-value=0.00097  Score=58.47  Aligned_cols=35  Identities=37%  Similarity=0.544  Sum_probs=28.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ++.+|+++|++||||||++..|+..|   |..  +++.|.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D~   38 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL---RLP--LLSKDA   38 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHHH
Confidence            57899999999999999999999877   443  466663

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.86  E-value=0.0079  Score=52.51  Aligned_cols=76  Identities=11%  Similarity=-0.013  Sum_probs=42.6

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHH---HHHHhhh-----cCCeeEEEEccCCCC-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI-----EIGITGAILTKLDGD-  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~---~~~~~~~-----~~~i~GvIlNk~D~~-  167 (403)
                      .+.+.|+||||.....         .  ....+.+++|+|.........   ....+..     ... .-+|.||+|.. 
T Consensus        66 ~~~l~i~Dt~G~~~~~---------~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~  133 (184)
T 3ihw_A           66 SYLLLIRDEGGPPELQ---------F--AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISA  133 (184)
T ss_dssp             EEEEEEEECSSSCCHH---------H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBT
T ss_pred             EEEEEEEECCCChhhh---------e--ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence            4678889999975421         1  112488999999966543333   2222221     222 34888999963 


Q ss_pred             --C---chhHHHHHHHHhC-CCe
Q 015657          168 --S---RGGAALSVKEVSG-KPI  184 (403)
Q Consensus       168 --~---~~~~~~~~~~~~g-~pi  184 (403)
                        .   ....+..+....+ .++
T Consensus       134 ~~~~~v~~~~~~~~~~~~~~~~~  156 (184)
T 3ihw_A          134 ANPRVIDDSRARKLSTDLKRCTY  156 (184)
T ss_dssp             TBCCCSCHHHHHHHHHHTTTCEE
T ss_pred             ccccccCHHHHHHHHHHcCCCeE
Confidence              1   1233444555554 444

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=96.86  E-value=0.0004  Score=72.03  Aligned_cols=64  Identities=17%  Similarity=0.222  Sum_probs=35.8

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~  167 (403)
                      +..+.|+||||.-.+.....      .....+|.+++|+|+..+  ......+... ...++ .-+++||+|..
T Consensus        51 g~~i~~iDTPGhe~f~~~~~------~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~  117 (537)
T 3izy_P           51 GEKITFLDTPGHAAFSAMRA------RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKA  117 (537)
T ss_dssp             SSCCBCEECSSSCCTTTSBB------SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGT
T ss_pred             CCEEEEEECCChHHHHHHHH------HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEeccccc
Confidence            45789999999654321111      111235788999999543  2222222222 22333 44888999953

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.85  E-value=0.00078  Score=59.36  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=29.0

Q ss_pred             cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657            9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus         9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+...++.+|+++|.+||||||++..|+..+  .|  ..++|+|
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d   43 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG   43 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence            4445566789999999999999998887652  14  4467776

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.85  E-value=0.0014  Score=58.97  Aligned_cols=65  Identities=20%  Similarity=0.124  Sum_probs=37.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHh---hhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTF---NIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~---~~~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.|+||||...... +.   ..  ....++.+++|+|...........    ..+   .... ..-+|.||+|..
T Consensus        73 ~~~~l~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~  144 (214)
T 3q3j_B           73 QRVELSLWDTSGSPYYDN-VR---PL--CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLLIGCKTDLR  144 (214)
T ss_dssp             CEEEEEEEEECCSGGGTT-TG---GG--GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTS-EEEEEEECGGGG
T ss_pred             EEEEEEEEECCCCHhHHH-HH---HH--HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEChhhc
Confidence            457899999999643211 00   00  112458899999996654433321    122   1222 344888999964

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.84  E-value=0.015  Score=54.92  Aligned_cols=39  Identities=31%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC----cEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~----kVllVd~   51 (403)
                      .++..++++|++|+|||+++..+|..+...+.    .+..+++
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~  107 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR  107 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence            34567899999999999999999999987654    5555553

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.81  E-value=0.0012  Score=58.49  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=33.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      ..+++++|+.|+||||++..++..+..+|++|+++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~   39 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP   39 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence            4688999999999999999999999889999998753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=96.80  E-value=0.003  Score=60.48  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=37.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHH---HHHHhh---hcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAA---LVTTFN---IEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~---~~~~~~---~~~~i~GvIlNk~D~  166 (403)
                      .++.+.|+||||...........+.. ...-.++.+++|+|+....   +...   .+..+.   .. .+.-+|+||+|.
T Consensus        50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~-~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~-~piilv~NK~Dl  127 (307)
T 3r7w_A           50 GNMTLNLWDCGGQDVFMENYFTKQKD-HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD-AKIFVLLHKMDL  127 (307)
T ss_dssp             TTEEEEEEEECCSHHHHHHHHTTTHH-HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTT-CEEEEEEECGGG
T ss_pred             CceEEEEEECCCcHHHhhhhhhhHHH-HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCC-CeEEEEEecccc
Confidence            36789999999974321100000000 0112468899999985432   2211   122221   12 234588999997


Q ss_pred             CC
Q 015657          167 DS  168 (403)
Q Consensus       167 ~~  168 (403)
                      ..
T Consensus       128 ~~  129 (307)
T 3r7w_A          128 VQ  129 (307)
T ss_dssp             SC
T ss_pred             cc
Confidence            64

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.77  E-value=0.0034  Score=55.41  Aligned_cols=30  Identities=30%  Similarity=0.336  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      .++++|++|+||||++..++..+...++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~   69 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRD   69 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcccccc
Confidence            389999999999999999999887655443

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.76  E-value=0.0011  Score=69.23  Aligned_cols=42  Identities=31%  Similarity=0.498  Sum_probs=37.4

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC-CcEEEEeccC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDV   53 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G-~kVllVd~D~   53 (403)
                      .+++.+|+++|.+||||||++..|+..|..+| +++.++|.|.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~  435 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT  435 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence            34678999999999999999999999999888 8898999883

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.76  E-value=0.00084  Score=59.54  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      ++.+|+++|.+||||||++..|+..|  .|+++..++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~   38 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF   38 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence            45789999999999999998888776  3677766553

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.76  E-value=0.00036  Score=62.42  Aligned_cols=35  Identities=31%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      +|+|+|.+||||||++..|+..|...|++|.++.-
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~   36 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence            68999999999999999999999988888877654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.75  E-value=0.00081  Score=58.83  Aligned_cols=33  Identities=42%  Similarity=0.557  Sum_probs=26.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +++|+++|++||||||++..||..|   |..  ++|.|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l---~~~--~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT---KRI--LYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence            5678999999999999999998776   433  56766

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.75  E-value=0.0041  Score=57.36  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=51.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe--ccCCChhhHHHHHHhhhccCCc--eEeCCCCCCHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVP--VYTAGTEVKPSQIAKQ   88 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd--~D~~rp~~~~~l~~~~~~~gv~--v~~~~~~~~~~~~~~~   88 (403)
                      ....+.+++|.-|+||||.+..++..+..+|++|+++.  .|. |.+  ..+   ....|+.  .+....   ..    +
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg--~~i---~sr~G~~~~a~~i~~---~~----d   83 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS--SSF---CTHDRNTMEALPACL---LR----D   83 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEESS---GG----G
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch--HHH---HhhcCCeeEEEecCC---HH----H
Confidence            34688999999999999999999999999999999987  332 211  111   1112322  222111   11    1


Q ss_pred             HHHHHHhCCCcEEEEeCCCCcc
Q 015657           89 GLEEAKKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        89 ~l~~~~~~~~D~VIIDtpg~l~  110 (403)
                      .++.+  ..||+|+||=+-.+.
T Consensus        84 i~~~~--~~~dvViIDEaQF~~  103 (234)
T 2orv_A           84 VAQEA--LGVAVIGIDEGQFFP  103 (234)
T ss_dssp             GHHHH--TTCSEEEESSGGGCT
T ss_pred             HHHHh--ccCCEEEEEchhhhh
Confidence            23333  579999999877653

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.016  Score=55.98  Aligned_cols=104  Identities=6%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-------CCcEEEEeccCCChh--hHHHHHHhhhccCCceEeCCCCCCH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-------GKSCMLVAGDVYRPA--AIDQLVILGEQVGVPVYTAGTEVKP   82 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-------G~kVllVd~D~~rp~--~~~~l~~~~~~~gv~v~~~~~~~~~   82 (403)
                      ..+|..+.++|++|+|||+++..++..|...       ...++.|.|-.....  .+..+.  ....+....    ....
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~--~~L~g~~~~----~~~~  115 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIW--FAISKENLC----GDIS  115 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHH--HHHSCCC------CCCC
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHH--HHhcCCCCC----chHH
Confidence            4567788999999999999999999999753       245666666544322  222221  111222111    1123


Q ss_pred             HHHHHHHHHHH--HhCCCcEEEEeCCCCccccHHhHHHHHHH
Q 015657           83 SQIAKQGLEEA--KKKNVDVVIVDTAGRLQIDKAMMDELKDV  122 (403)
Q Consensus        83 ~~~~~~~l~~~--~~~~~D~VIIDtpg~l~~d~~l~~el~~i  122 (403)
                      .+.+...+..+  .....-+|++|=.-.+. +..++..+-.+
T Consensus       116 ~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~  156 (318)
T 3te6_A          116 LEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKW  156 (318)
T ss_dssp             HHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhc
Confidence            44455555543  12345689999877766 44555555444

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.72  E-value=0.0019  Score=58.85  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=33.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      +..+|++.|..||||||.+..|+.+|..+|++|.+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~   41 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR   41 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence            4688999999999999999999999999999996543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.72  E-value=0.0049  Score=61.44  Aligned_cols=19  Identities=32%  Similarity=0.366  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.++|||||+...|.
T Consensus         3 I~ivG~pnvGKSTL~n~L~   21 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAAT   21 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999998776

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.71  E-value=0.0016  Score=60.17  Aligned_cols=48  Identities=27%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-----CCcEEEEeccCC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVY   54 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-----G~kVllVd~D~~   54 (403)
                      +++|+-.++.+|+++|+.||||||++..|+..+..-     ..++.+++.|.+
T Consensus        17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~   69 (245)
T 2jeo_A           17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF   69 (245)
T ss_dssp             ------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred             ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence            456666678999999999999999999998877321     245778887743

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.71  E-value=0.0018  Score=56.03  Aligned_cols=38  Identities=26%  Similarity=0.528  Sum_probs=30.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .++.+|+++|++||||||++..|+..+   |  ..+++.|...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence            346889999999999999999988766   4  3467888554

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.00098  Score=58.63  Aligned_cols=39  Identities=21%  Similarity=0.375  Sum_probs=32.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .+++|+|.+||||||++..|+..+...|+++..|..|..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~   41 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH   41 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence            578999999999999999999999998988877776643

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.026  Score=56.22  Aligned_cols=69  Identities=19%  Similarity=0.321  Sum_probs=46.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~   91 (403)
                      .+|+-+++.|+||+|||++|.++|..+   |.....|++...-                     ..+. .....+++.+.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~---------------------sk~vGese~~vr~lF~  235 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV---------------------QKYIGEGSRMVRELFV  235 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS---------------------CSSTTHHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh---------------------ccccchHHHHHHHHHH
Confidence            467889999999999999999998765   4556555543100                     0111 13345677777


Q ss_pred             HHHhCCCcEEEEeC
Q 015657           92 EAKKKNVDVVIVDT  105 (403)
Q Consensus        92 ~~~~~~~D~VIIDt  105 (403)
                      .++....-+|+||=
T Consensus       236 ~Ar~~aP~IIFiDE  249 (405)
T 4b4t_J          236 MAREHAPSIIFMDE  249 (405)
T ss_dssp             HHHHTCSEEEEEES
T ss_pred             HHHHhCCceEeeec
Confidence            77766778888884

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.68  E-value=0.0014  Score=68.09  Aligned_cols=41  Identities=34%  Similarity=0.582  Sum_probs=37.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +.+.+|+++|.+||||||++..|+..|..+|+++.++|.|.
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~  410 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV  410 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence            34688999999999999999999999999999999999883

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.67  E-value=0.0019  Score=61.96  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=35.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G~kVllVd~D~~   54 (403)
                      .++.+++|+|++||||||++..|+..+.  -.+-.|.++++|-+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            5678999999999999999999998876  34457888888854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.66  E-value=0.002  Score=55.48  Aligned_cols=39  Identities=26%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-------CCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-------~G~kVllVd~   51 (403)
                      ..+..++++|++|+||||++..++..+..       .+.++..+++
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM   86 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence            34566899999999999999999999876       4666766664

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.64  E-value=0.0093  Score=54.18  Aligned_cols=34  Identities=41%  Similarity=0.462  Sum_probs=26.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      -...|.++|.-||||||++..|    ++.|..  ++|+|.
T Consensus         8 ~~~~iglTGgigsGKStv~~~l----~~~g~~--vidaD~   41 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLF----AARGAS--LVDTDL   41 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHH----HHTTCE--EEEHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHH----HHCCCc--EEECcH
Confidence            3567999999999999999554    455654  578884

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.63  E-value=0.0014  Score=57.33  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=27.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|.+|+++|.+||||||++..|+..+   |.  .+++.|
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d   35 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG   35 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence            46889999999999999999988766   43  356665

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.62  E-value=0.003  Score=57.95  Aligned_cols=44  Identities=30%  Similarity=0.416  Sum_probs=37.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR   55 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~r   55 (403)
                      ..++.+|++.|..||||||++..|+.+|.. .|++|.++...|..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~   62 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG   62 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence            456789999999999999999999999999 99999774555544

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.62  E-value=0.0049  Score=63.00  Aligned_cols=113  Identities=23%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..|+++|.+|+||||+...|...      +..++. | + |..       ........+.                   .
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~------~~a~vs-~-~-~gT-------T~d~~~~~i~-------------------~  288 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNE------DRAIVT-D-I-PGT-------TRDVISEEIV-------------------I  288 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH------TBCCCC-C-S-SCC-------SSCSCCEEEE-------------------E
T ss_pred             CEEEEECcCCCcHHHHHHHHHCC------CCCccC-C-C-CCe-------eeeeEEEEEe-------------------c
Confidence            45889999999999999888732      111111 1 0 110       0000011111                   1


Q ss_pred             CCCcEEEEeCCCCc-cccHH-----hHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRL-QIDKA-----MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l-~~d~~-----l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~  167 (403)
                      .++.++|+||||.. .....     ....+.   ..-.++.+++|+|+...  .+.......+ ... ..-+|+||+|..
T Consensus       289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~---~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~~-piivV~NK~DL~  363 (482)
T 1xzp_A          289 RGILFRIVDTAGVRSETNDLVERLGIERTLQ---EIEKADIVLFVLDASSPLDEEDRKILERI-KNK-RYLVVINKVDVV  363 (482)
T ss_dssp             TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH---HHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTS-SEEEEEEECSSC
T ss_pred             CCeEEEEEECCCccccchhhHHHHHHHHHHH---HhhcccEEEEEecCCCCCCHHHHHHHHHh-cCC-CEEEEEECcccc
Confidence            45789999999975 32110     011111   12235889999998432  2222222222 222 345899999975


Q ss_pred             C
Q 015657          168 S  168 (403)
Q Consensus       168 ~  168 (403)
                      .
T Consensus       364 ~  364 (482)
T 1xzp_A          364 E  364 (482)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.59  E-value=0.0016  Score=59.52  Aligned_cols=27  Identities=33%  Similarity=0.489  Sum_probs=24.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      .+++||++.|+|||||||.|..|+..|
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999998776

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.58  E-value=0.0048  Score=57.66  Aligned_cols=73  Identities=23%  Similarity=0.286  Sum_probs=45.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..++.++++|++|+||||++..+|..+   +.++..+.+......                    ........+...+..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~~~~  105 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK--------------------FIGEGASLVKDIFKL  105 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC--------------------STTHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh--------------------ccchHHHHHHHHHHH
Confidence            356678999999999999998888664   556665554311100                    001122344555566


Q ss_pred             HHhCCCcEEEEeCCCC
Q 015657           93 AKKKNVDVVIVDTAGR  108 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~  108 (403)
                      +......+++||=...
T Consensus       106 ~~~~~~~vl~iDEid~  121 (285)
T 3h4m_A          106 AKEKAPSIIFIDEIDA  121 (285)
T ss_dssp             HHHTCSEEEEEETTHH
T ss_pred             HHHcCCeEEEEECHHH
Confidence            6556678999996543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.57  E-value=0.0013  Score=56.42  Aligned_cols=34  Identities=35%  Similarity=0.506  Sum_probs=27.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .+|+++|++||||||++..|+..+   |+.  +++.|.+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~~--~i~~d~~   35 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL---KYP--IIKGSSF   35 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH---CCC--EEECCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---CCe--eecCccc
Confidence            478999999999999998888766   433  5777744

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.57  E-value=0.0012  Score=58.07  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=27.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+++|.+||||||++..|+..|   |  ..+++.|
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d   44 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG   44 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence            35789999999999999999998876   3  3466765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.58  E-value=0.00036  Score=61.97  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=18.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +..-|+++|.+||||||+...|.
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~   51 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYT   51 (204)
Confidence            44557889999999999997665

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.56  E-value=0.0069  Score=60.72  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=21.9

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHH
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +++.-+....++++|.+||||||+...|+
T Consensus       150 i~lelk~g~~VgLVG~~gAGKSTLL~~Ls  178 (416)
T 1udx_A          150 LRLELMLIADVGLVGYPNAGKSSLLAAMT  178 (416)
T ss_dssp             EEEEECCSCSEEEECCGGGCHHHHHHHHC
T ss_pred             eeeEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence            33333344568999999999999998776

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.55  E-value=0.0013  Score=58.20  Aligned_cols=35  Identities=34%  Similarity=0.514  Sum_probs=27.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      .++.+|+|+|.+||||||++..|+..    |.  .++|+|.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d~   40 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLDA   40 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence            46789999999999999999777753    54  4668774

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.52  E-value=0.0016  Score=57.29  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=27.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+++|.+||||||++..|+..|   |..  +++.|
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l---~~~--~i~~d   41 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY---GYT--HLSTG   41 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh---CCe--EEcHH
Confidence            56789999999999999999998776   433  56665

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.52  E-value=0.006  Score=58.80  Aligned_cols=75  Identities=16%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+++-++++|++|+|||+++..+|..+  .+..+..+++.....          ..          .......++..+..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~----------~~----------~g~~~~~~~~lf~~  100 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVS----------KW----------LGESEKLVKNLFQL  100 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCC----------SS----------CCSCHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHh----------hh----------hhHHHHHHHHHHHH
Confidence            356889999999999999999998776  245555555431100          00          00123445566666


Q ss_pred             HHhCCCcEEEEeCCCCc
Q 015657           93 AKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l  109 (403)
                      +......+|+||=...+
T Consensus       101 a~~~~~~vl~iDEid~l  117 (322)
T 1xwi_A          101 ARENKPSIIFIDEIDSL  117 (322)
T ss_dssp             HHHTSSEEEEEETTTGG
T ss_pred             HHhcCCcEEEeecHHHh
Confidence            65567789999965544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.52  E-value=0.0022  Score=55.89  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=22.1

Q ss_pred             cccCCCCEEEEEEcCCCCcHHHHHHHH
Q 015657            9 VFAKSRPTVILLAGLQGVGKTTVSAKL   35 (403)
Q Consensus         9 ~~~~~~~~iI~v~G~gGsGKTTla~~L   35 (403)
                      +|+-.++.+++++|++||||||++..+
T Consensus         3 sl~i~~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            3 KLTIPELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred             cccCCCCEEEEEECCCCCCHHHHHHHH
Confidence            344456789999999999999999763

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.48  E-value=0.023  Score=55.71  Aligned_cols=109  Identities=15%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccC-CceEeCCC-CCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVG-VPVYTAGT-EVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~g-v~v~~~~~-~~~~~~~~~~~l   90 (403)
                      +..+++|+|++||||||+...|+..+... +.+++.+. |+.....       ..... +.-...+. ...    +.+++
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~-------~~~~~~v~q~~~~~~~~~----~~~~L  189 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVH-------ESKKCLVNQREVHRDTLG----FSEAL  189 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCC-------CCSSSEEEEEEBTTTBSC----HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhh-------hccccceeeeeeccccCC----HHHHH
Confidence            44589999999999999999999988764 66664443 4321110       00000 11111111 111    23355


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG  140 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g  140 (403)
                      ..+...+.|++|+|=|..    ......+.....  .-..+++++.....
T Consensus       190 a~aL~~~PdvillDEp~d----~e~~~~~~~~~~--~G~~vl~t~H~~~~  233 (356)
T 3jvv_A          190 RSALREDPDIILVGEMRD----LETIRLALTAAE--TGHLVFGTLHTTSA  233 (356)
T ss_dssp             HHHTTSCCSEEEESCCCS----HHHHHHHHHHHH--TTCEEEEEESCSSH
T ss_pred             HHHhhhCcCEEecCCCCC----HHHHHHHHHHHh--cCCEEEEEEccChH
Confidence            555568999999999873    333332222222  12456666665443

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.47  E-value=0.002  Score=57.25  Aligned_cols=36  Identities=33%  Similarity=0.461  Sum_probs=28.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +..|.+|+++|.+||||||++..|+..+   |..  +++.|
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d   52 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG   52 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence            3456789999999999999999998877   444  45654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.47  E-value=0.0021  Score=56.31  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=27.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+++++|++||||||++..|+..   .+.....++.|
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d   43 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD   43 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence            4688999999999999999888754   23344567766

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.46  E-value=0.051  Score=49.19  Aligned_cols=83  Identities=12%  Similarity=0.018  Sum_probs=45.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+-|.||+|.-.... +..   ..  ....+.+++|.|.........+..      .....--+.-+|-||.|... 
T Consensus        60 ~~v~l~iwDtaGqe~~~~-l~~---~~--~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~  133 (216)
T 4dkx_A           60 RTIRLQLWDTAGLERFRS-LIP---SY--IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK  133 (216)
T ss_dssp             CEEEEEEECCSCTTTCGG-GHH---HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred             eEEEEEEEECCCchhhhh-HHH---HH--hccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence            357788999999643311 111   11  123578888888865544433221      11111123447889999643 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+.......+.+.
T Consensus       134 r~V~~~e~~~~a~~~~~~~  152 (216)
T 4dkx_A          134 RQVSIEEGERKAKELNVMF  152 (216)
T ss_dssp             CCSCHHHHHHHHHHHTCEE
T ss_pred             CcccHHHHhhHHHHhCCee
Confidence               2244555666777654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.46  E-value=0.0011  Score=58.06  Aligned_cols=32  Identities=41%  Similarity=0.649  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+|+++|.+||||||++..|+..|   |..  ++|.|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l---g~~--~id~D   34 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL---GVG--LLDTD   34 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc---CCC--EEeCc
Confidence            358999999999999998888766   433  66777

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.46  E-value=0.0013  Score=56.75  Aligned_cols=33  Identities=33%  Similarity=0.485  Sum_probs=26.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +.+|+++|++||||||++..|+..+   |  ..++|+|
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d   36 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD   36 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence            3579999999999999998888655   3  3467776

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.46  E-value=0.003  Score=60.68  Aligned_cols=38  Identities=32%  Similarity=0.363  Sum_probs=34.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D   52 (403)
                      ...++++|++|+|||+++..++..+. .+|++|.++.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~  190 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP  190 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence            46789999999999999999999999 999999888764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.45  E-value=0.006  Score=61.52  Aligned_cols=38  Identities=21%  Similarity=0.420  Sum_probs=33.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D   52 (403)
                      +..++++|++|+||||++..++..+...  +.++..+++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~  169 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            5678999999999999999999998765  7888888876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.44  E-value=0.044  Score=55.51  Aligned_cols=40  Identities=35%  Similarity=0.467  Sum_probs=33.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+.+|+++|.+||||||++..|+..+...+..+..+..|
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d   76 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   76 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence            4567899999999999999999999998777777766655

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.43  E-value=0.0017  Score=55.87  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=26.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      -..+|+++|.+||||||++..||..|   |.+  ++|+|
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D   39 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD   39 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence            35789999999999999998888766   444  46766

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.42  E-value=0.0019  Score=55.06  Aligned_cols=28  Identities=36%  Similarity=0.694  Sum_probs=22.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM   47 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl   47 (403)
                      .+|+++|++||||||++..|    .+.|+.++
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i   29 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL----KERGAKVI   29 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred             cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence            47899999999999999877    45577654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.42  E-value=0.0049  Score=53.67  Aligned_cols=20  Identities=35%  Similarity=0.586  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      -|+++|.+||||||+...|+
T Consensus         4 kv~ivG~~gvGKStLl~~l~   23 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLM   23 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999998776

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.42  E-value=0.0025  Score=54.90  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-------CCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-------~G~kVllVd~   51 (403)
                      ..+..++++|++|+||||++..++..+..       .+..+..+++
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL   86 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence            34566799999999999999999999876       3566665554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.41  E-value=0.0086  Score=56.35  Aligned_cols=73  Identities=15%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +++.++++|++|+||||++..++..+   +.....+++......                    .........+..+..+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------------~~~~~~~~~~~~~~~~  109 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK--------------------YVGDGEKLVRALFAVA  109 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS--------------------SCSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc--------------------ccchHHHHHHHHHHHH
Confidence            46789999999999999999888765   445555554311000                    0011334455555555


Q ss_pred             HhCCCcEEEEeCCCCc
Q 015657           94 KKKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l  109 (403)
                      ......+++||=...+
T Consensus       110 ~~~~~~vl~iDEid~l  125 (297)
T 3b9p_A          110 RHMQPSIIFIDEVDSL  125 (297)
T ss_dssp             HHTCSEEEEEETGGGT
T ss_pred             HHcCCcEEEeccHHHh
Confidence            5567789999976544

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.40  E-value=0.0021  Score=58.05  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=27.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +++..|+++|.+||||||++..|+..|   |.  .+++.|
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   36 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG   36 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence            356789999999999999999998876   33  356654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.38  E-value=0.017  Score=50.98  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHH
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +.-.+...++++|.+||||||+...|+
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence            334456789999999999999997776

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.38  E-value=0.0026  Score=59.19  Aligned_cols=34  Identities=29%  Similarity=0.294  Sum_probs=27.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ++|+|+|++||||||++..||..+   |  ..+++.|..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~   35 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV   35 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence            578999999999999999998766   3  336777753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.38  E-value=0.0029  Score=58.46  Aligned_cols=28  Identities=25%  Similarity=0.255  Sum_probs=24.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ..+|.+|+++|++||||||++..|+..+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578899999999999999999998766

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.37  E-value=0.0022  Score=55.86  Aligned_cols=34  Identities=38%  Similarity=0.439  Sum_probs=26.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+++|++||||||++..|+..+   |.  .+++.|
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~---~~--~~~~~d   43 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS---GL--KYINVG   43 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence            45678999999999999999998776   33  345655

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.37  E-value=0.0018  Score=55.79  Aligned_cols=32  Identities=41%  Similarity=0.571  Sum_probs=26.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++|+++|.+||||||++..|+..|   |.  .+++.|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d   34 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL---GY--EFVDTD   34 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence            468999999999999999888776   43  366776

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=96.37  E-value=0.23  Score=46.45  Aligned_cols=169  Identities=12%  Similarity=0.195  Sum_probs=95.9

Q ss_pred             CCCEEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHHHHhhhc-------------------
Q 015657           13 SRPTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGEQ-------------------   68 (403)
Q Consensus        13 ~~~~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l~~~~~~-------------------   68 (403)
                      ...+.|+++|-  +|-||=.+|+.|++.|+.+|++|.++..|||-   |+...+.. +++-                   
T Consensus        21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GTMsP~q-HGEVfVtdDG~EtDLDLGhYERF   99 (295)
T 2vo1_A           21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYE-HGEVFVLDDGGEVDLDLGNYERF   99 (295)
T ss_dssp             CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC--------------------------------
T ss_pred             ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCCCCChhh-hceEEeecccccccccccchHhh
Confidence            35688999876  99999999999999999999999999999973   33322210 1110                   


Q ss_pred             cCCce-----EeC-----------------CCCCC--H--HHHHHHHHHHHH-------hCCCcEEEEeCCCCccc--cH
Q 015657           69 VGVPV-----YTA-----------------GTEVK--P--SQIAKQGLEEAK-------KKNVDVVIVDTAGRLQI--DK  113 (403)
Q Consensus        69 ~gv~v-----~~~-----------------~~~~~--~--~~~~~~~l~~~~-------~~~~D~VIIDtpg~l~~--d~  113 (403)
                      .++..     ++.                 +....  |  .+.+++.+..+.       ..++|++|++-.|....  ..
T Consensus       100 l~~~l~~~~niTtGkiY~~Vi~kERrGdYLG~TVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Dv~IvEiGGTVGDIEs~  179 (295)
T 2vo1_A          100 LDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESM  179 (295)
T ss_dssp             --------CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGH
T ss_pred             ccCCcCccccccHHHHHHHHHHHHHcCCCCCCeEEecCChhhHHHHHHHHhhcccccccCCCCCEEEEEcCceecccccc
Confidence            00000     000                 00000  0  111233333321       24689999998887764  34


Q ss_pred             HhHHHHHHHhhhcCCceEEEEEe-------c------ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHh
Q 015657          114 AMMDELKDVKRVLNPTEVLLVVD-------A------MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS  180 (403)
Q Consensus       114 ~l~~el~~i~~~~~~~~vllVvd-------a------~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~  180 (403)
                      ..++.+.++...+....++++--       +      ...|..+..++.+.  +.+. +|+-+.+..-....-..+...+
T Consensus       180 PFlEAiRQ~~~~~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~G--IqPD-iivcRse~pl~~~~k~KIAlFC  256 (295)
T 2vo1_A          180 PFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLG--LSPD-LVVCRCSNPLDTSVKEKISMFC  256 (295)
T ss_dssp             HHHHHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHT--CCCS-EEEEECSSCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcccceeEEEeeccccccccccccccchHhHHHHHHhcC--CCCC-eeeecCCCCCCHHHHHHHHHcc
Confidence            56777777777666555544321       1      11255665555443  2223 6677777655555556666677


Q ss_pred             CCCeE
Q 015657          181 GKPIK  185 (403)
Q Consensus       181 g~pi~  185 (403)
                      ++|..
T Consensus       257 nV~~~  261 (295)
T 2vo1_A          257 HVEPE  261 (295)
T ss_dssp             TSCGG
T ss_pred             CCCHH
Confidence            77653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.37  E-value=0.0011  Score=57.62  Aligned_cols=31  Identities=35%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM   47 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl   47 (403)
                      ++.+|+++|.+||||||++..|+..|   |..++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL---PGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence            56789999999999999998887654   55543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.36  E-value=0.0027  Score=60.42  Aligned_cols=36  Identities=17%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      ..|+.++++|++|+|||+++..+|..+   |.++..+++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~   69 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA   69 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence            467889999999999999999999888   677777765

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.35  E-value=0.026  Score=56.93  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEe
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVA   50 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd   50 (403)
                      .++|.|.+|+||||++..++.+|...|. +|+++.
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a   81 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA   81 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence            7899999999999999999999999887 676665

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.35  E-value=0.0024  Score=55.76  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+++|.+||||||++..|+..+   |.  .+++.|
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d   36 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG   36 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence            35689999999999999999998766   43  356665

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.34  E-value=0.0049  Score=59.38  Aligned_cols=43  Identities=30%  Similarity=0.375  Sum_probs=36.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G-~kVllVd~D~~   54 (403)
                      ..++.+++|+|++||||||++..|+..+... | .+|.+|..|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            4567899999999999999999999988753 5 57888888864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.33  E-value=0.019  Score=56.56  Aligned_cols=84  Identities=17%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCC-CCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~-~~~~~~~~~~~~l   90 (403)
                      .+..+++++|++||||||+...|+..+... ..+|.+++-+ ...       .+.  ..+.+++.. ....+ ..+..++
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~-------~~~--~~~~~v~Q~~~g~~~-~~~~~~l  202 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEY-------VFK--HKKSIVNQREVGEDT-KSFADAL  202 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCS-------CCC--CSSSEEEEEEBTTTB-SCSHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhh-------hhc--cCceEEEeeecCCCH-HHHHHHH
Confidence            456789999999999999999999998764 4567665533 210       011  111111110 00000 0113344


Q ss_pred             HHHHhCCCcEEEEeCCC
Q 015657           91 EEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg  107 (403)
                      ..+...+.|++|+|=|.
T Consensus       203 ~~~L~~~pd~illdE~~  219 (372)
T 2ewv_A          203 RAALREDPDVIFVGEMR  219 (372)
T ss_dssp             HHHTTSCCSEEEESCCC
T ss_pred             HHHhhhCcCEEEECCCC
Confidence            44444689999999987

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.33  E-value=0.015  Score=51.60  Aligned_cols=30  Identities=33%  Similarity=0.452  Sum_probs=25.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      .+..++++|++|+||||++..++..+....
T Consensus        44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~   73 (250)
T 1njg_A           44 IHHAYLFSGTRGVGKTSIARLLAKGLNCET   73 (250)
T ss_dssp             CCSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            356889999999999999999998887543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.33  E-value=0.024  Score=55.50  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             CCCEEEEE--EcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccC
Q 015657           13 SRPTVILL--AGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v--~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~   53 (403)
                      ..+..++|  +|++|+||||++..++..+...      +..++.++|..
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN   96 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence            35678888  9999999999999999888753      56777888753

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.32  E-value=0.0031  Score=61.93  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      -.|+++|.+|+||||+...|.
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~   58 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLF   58 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHh
Confidence            347899999999999997764

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.31  E-value=0.0026  Score=65.41  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=36.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-C-CCcEEEEeccC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK-Q-GKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~-G~kVllVd~D~   53 (403)
                      +++.+|+++|.+||||||++..||..|.. . |+.+.++|.|.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            35688999999999999999999999986 5 47788999996

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.30  E-value=0.0032  Score=61.48  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=30.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +.+|+|+|++||||||++..||..+.     +.+|++|.+
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence            36899999999999999999987663     678999965

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.28  E-value=0.014  Score=53.73  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=27.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .++-++++|++|+||||++..++..+   +..+..+++.
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~   79 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGS   79 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHH
Confidence            35568999999999999999998766   4455555543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.26  E-value=0.0021  Score=55.81  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++|+++|++||||||++..||..|   |  ..++|.|
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d   36 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD   36 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence            368999999999999999998776   3  3467776

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.25  E-value=0.0052  Score=58.06  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=36.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      +...++++|++|+||||++..|+..+...+..+..++|.....
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~   88 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME   88 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence            3468999999999999999999999987777888888876543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.012  Score=59.23  Aligned_cols=70  Identities=20%  Similarity=0.340  Sum_probs=47.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~   91 (403)
                      .+|+-|+++|+||+|||++|.++|..+   |.....+++.-.-                     +.+. .....++..+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~---------------------sk~~Gese~~ir~~F~  268 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIV---------------------DKYIGESARIIREMFA  268 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTC---------------------CSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhc---------------------cccchHHHHHHHHHHH
Confidence            467889999999999999999998766   5566666543111                     0111 12345666677


Q ss_pred             HHHhCCCcEEEEeCC
Q 015657           92 EAKKKNVDVVIVDTA  106 (403)
Q Consensus        92 ~~~~~~~D~VIIDtp  106 (403)
                      .++....-+|+||-.
T Consensus       269 ~A~~~~P~IifiDEi  283 (437)
T 4b4t_L          269 YAKEHEPCIIFMDEV  283 (437)
T ss_dssp             HHHHSCSEEEEEECC
T ss_pred             HHHhcCCceeeeecc
Confidence            776667788888853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.21  E-value=0.0025  Score=54.61  Aligned_cols=31  Identities=32%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|+++|.+||||||++..|+..|   |..  ++++|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~--~i~~d   32 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL---NIP--FYDVD   32 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECc
Confidence            58999999999999998888766   443  56766

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.20  E-value=0.0029  Score=56.37  Aligned_cols=33  Identities=36%  Similarity=0.519  Sum_probs=25.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +.+|+++|+.||||||++..|+.    .|..  ++|+|.
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d~   34 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD----LGVP--LVDADV   34 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence            36899999999999999977764    3544  567773

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.19  E-value=0.0089  Score=54.32  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=32.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYR   55 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd~D~~r   55 (403)
                      ..+|++.|..||||||.+..|+.+|...|+ .|. +.-.|..
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~-~~rep~~   43 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV-FTREPGG   43 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE-EEESSCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce-eeeCCCC
Confidence            468999999999999999999999999998 664 4344443

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.18  E-value=0.0055  Score=54.88  Aligned_cols=39  Identities=36%  Similarity=0.546  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      .|++-|.-||||||.+..|+.+|.++|++|.+.. .|...
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t   40 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGT   40 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCC
Confidence            4778899999999999999999999999996553 34443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.18  E-value=0.0039  Score=55.76  Aligned_cols=36  Identities=36%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      -..+|.++|..||||||++..|+..+   |  +.++|+|.+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~   46 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI   46 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence            45889999999999999997777654   5  456788843

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.18  E-value=0.0055  Score=51.68  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=29.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .-++++|++|+|||++|..++......+..+. ++|.
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~   60 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL   60 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence            44789999999999999988877666677776 7765

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.085  Score=53.41  Aligned_cols=70  Identities=26%  Similarity=0.346  Sum_probs=47.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~   91 (403)
                      .+|+-|++.|++|+|||++|.++|..+   |.....+++....                     ..+. .....++..+.
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~---------------------sk~vGesek~ir~lF~  296 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELV---------------------QKYVGEGARMVRELFE  296 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC---------------------CCSSSHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhh---------------------cccCCHHHHHHHHHHH
Confidence            468889999999999999999998766   4555555543100                     0111 13345677777


Q ss_pred             HHHhCCCcEEEEeCC
Q 015657           92 EAKKKNVDVVIVDTA  106 (403)
Q Consensus        92 ~~~~~~~D~VIIDtp  106 (403)
                      .++....-+|+||--
T Consensus       297 ~Ar~~aP~IIfiDEi  311 (467)
T 4b4t_H          297 MARTKKACIIFFDEI  311 (467)
T ss_dssp             HHHHTCSEEEEEECC
T ss_pred             HHHhcCCceEeeccc
Confidence            776667788998853

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.17  E-value=0.008  Score=57.72  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=48.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+++-++++|++|+|||+++..+|..+   +..+..+++.        .+.  ....          ......++..+..
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~--------~l~--~~~~----------g~~~~~~~~~f~~  105 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS--------DLV--SKWM----------GESEKLVKQLFAM  105 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHH--------HHH--TTTG----------GGHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchH--------HHh--hccc----------chHHHHHHHHHHH
Confidence            346779999999999999999998765   5566666542        110  0000          1123445566666


Q ss_pred             HHhCCCcEEEEeCCCCc
Q 015657           93 AKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l  109 (403)
                      +......+++||=...+
T Consensus       106 a~~~~~~vl~iDEid~l  122 (322)
T 3eie_A          106 ARENKPSIIFIDQVDAL  122 (322)
T ss_dssp             HHHTSSEEEEEECGGGG
T ss_pred             HHhcCCeEEEechhhhh
Confidence            66567789999975544

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.16  E-value=0.0026  Score=57.46  Aligned_cols=34  Identities=15%  Similarity=0.285  Sum_probs=27.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+|.|++||||||++..|+..|.   .  ..++.|
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~--~~i~~d   37 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ---L--AHISAG   37 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC---C--EECCHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---C--ceecHH
Confidence            467799999999999999999988763   2  355654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.16  E-value=0.0036  Score=57.62  Aligned_cols=36  Identities=28%  Similarity=0.516  Sum_probs=29.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC----CCcEEEE
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLV   49 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~----G~kVllV   49 (403)
                      +..+|+|.|+.||||||.+..|+.+|...    |++|.+.
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~   63 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT   63 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence            45789999999999999999999999988    9998644

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.14  E-value=0.011  Score=57.68  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..++.++++|++|+||||++..+|..+   +..+..+++......                    ........++..+..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~--------------------~~g~~~~~~~~~~~~  171 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK--------------------WVGEGEKMVRALFAV  171 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS--------------------STTHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc--------------------ccchHHHHHHHHHHH
Confidence            456789999999999999999888654   666766665311000                    000122334445555


Q ss_pred             HHhCCCcEEEEeCC
Q 015657           93 AKKKNVDVVIVDTA  106 (403)
Q Consensus        93 ~~~~~~D~VIIDtp  106 (403)
                      +......+++||=.
T Consensus       172 a~~~~~~vl~iDEi  185 (357)
T 3d8b_A          172 ARCQQPAVIFIDEI  185 (357)
T ss_dssp             HHHTCSEEEEEETH
T ss_pred             HHhcCCeEEEEeCc
Confidence            55556789999954

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.13  E-value=0.0042  Score=58.77  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=28.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +.+|.+|+|+|.+||||||++..|+.    .|.  .+|++|.
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La~----lg~--~~id~D~  107 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLKN----LGA--YIIDSDH  107 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHHH----HTC--EEEEHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH----CCC--cEEehhH
Confidence            35678999999999999999988873    365  4578774

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.10  E-value=0.17  Score=50.57  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=22.4

Q ss_pred             CccHHHHHHhhcCCCHHHHHHHHHHH
Q 015657          309 SPVRRKRVAQDSGKTEQQVSQLVAQL  334 (403)
Q Consensus       309 ~~~r~~ria~gsg~~~~~v~~l~~~~  334 (403)
                      ...-.++||+-.|++++|+..+++..
T Consensus       323 d~~sl~~~a~~~~~~~~~~~~~~~s~  348 (413)
T 1tq4_A          323 DETSLQRLARDWEIEVDQVEAMIKSP  348 (413)
T ss_dssp             SHHHHHHHHSSSSSCHHHHHHTCSHH
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHhCh
Confidence            34457899999999999999998887

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.09  E-value=0.0061  Score=59.39  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=29.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ++++|+|+|++||||||++..||..|     ..-+|++|..
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence            45789999999999999998888543     4668999954

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.09  E-value=0.0024  Score=57.06  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++++|+++|++||||||++..|+..+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            46789999999999999999998766

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.07  E-value=0.0085  Score=55.81  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=28.3

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      ...+..++++|++|+||||+|..++..+   +..+..++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~   96 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC   96 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence            3456789999999999999999998764   55655554

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.07  E-value=0.043  Score=52.89  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=25.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      +..+..++++|++|+||||++..+|..+..
T Consensus        21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           21 GRGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            344677999999999999999999988864

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.06  E-value=0.014  Score=61.69  Aligned_cols=43  Identities=30%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL   62 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l   62 (403)
                      +.+|.|+||+|||++.+.+...+.++|.+|+++..   ...+++.+
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~---TN~AvD~i  249 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP---SNIAVDNL  249 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC---chHHHHHH
Confidence            67888999999999999999999999999987763   23444544

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.017  Score=58.13  Aligned_cols=69  Identities=20%  Similarity=0.352  Sum_probs=46.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~   91 (403)
                      .+|+-+++.|+||+|||++|.++|..+   |..+..+++.-..                     ..+. .....+++.+.
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~---------------------~~~~Ge~e~~ir~lF~  259 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV---------------------HKYLGEGPRMVRDVFR  259 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC---------------------CSSCSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh---------------------ccccchhHHHHHHHHH
Confidence            467889999999999999999999776   5566655543110                     0111 12345666777


Q ss_pred             HHHhCCCcEEEEeC
Q 015657           92 EAKKKNVDVVIVDT  105 (403)
Q Consensus        92 ~~~~~~~D~VIIDt  105 (403)
                      .++....-+++||-
T Consensus       260 ~A~~~aP~IifiDE  273 (428)
T 4b4t_K          260 LARENAPSIIFIDE  273 (428)
T ss_dssp             HHHHTCSEEEEEEC
T ss_pred             HHHHcCCCeeechh
Confidence            77666677888885

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.05  E-value=0.0033  Score=55.84  Aligned_cols=32  Identities=34%  Similarity=0.494  Sum_probs=25.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      .+|+++|.+||||||++..|+. +   |  +.++++|.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~   33 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADK   33 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence            4689999999999999988876 3   4  45667663

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.05  E-value=0.022  Score=54.73  Aligned_cols=26  Identities=35%  Similarity=0.462  Sum_probs=22.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .+. ++++|++|+||||++..|+..+.
T Consensus        36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           36 LPH-LLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence            345 89999999999999999998664

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.04  E-value=0.0041  Score=55.95  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=26.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+|+|..||||||++..|+.    .|.  .++|+|
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D   35 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD----LGI--NVIDAD   35 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence            467899999999999999988764    354  467776

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.01  E-value=0.0052  Score=59.32  Aligned_cols=35  Identities=31%  Similarity=0.506  Sum_probs=29.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ++++|+|+|++||||||++..||..+     ...+|++|.
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds   36 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS   36 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence            35789999999999999998888654     456889984

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.01  E-value=0.02  Score=53.94  Aligned_cols=27  Identities=37%  Similarity=0.640  Sum_probs=23.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQ   42 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~   42 (403)
                      +. ++++|++|+||||++..++..+...
T Consensus        43 ~~-~ll~G~~G~GKt~la~~l~~~l~~~   69 (323)
T 1sxj_B           43 PH-MIISGMPGIGKTTSVHCLAHELLGR   69 (323)
T ss_dssp             CC-EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             Ce-EEEECcCCCCHHHHHHHHHHHhcCC
Confidence            44 8999999999999999999888643

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.00  E-value=0.008  Score=57.89  Aligned_cols=36  Identities=33%  Similarity=0.479  Sum_probs=29.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ..|++|+|+|++||||||++..||..+     ...+|.+|.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS   43 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence            357899999999999999999998664     356888884

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.99  E-value=0.0031  Score=57.22  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=26.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++.+|+++|++||||||++..|+..+   |.  .+++.|
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   39 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG   39 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence            46789999999999999998888655   43  355654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.99  E-value=0.0032  Score=56.62  Aligned_cols=27  Identities=37%  Similarity=0.475  Sum_probs=23.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      .++.+|+++|++||||||++..|+..+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            356789999999999999998887654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.98  E-value=0.0049  Score=59.70  Aligned_cols=35  Identities=37%  Similarity=0.599  Sum_probs=28.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +++|+|+|++||||||++..||..+     ...+|++|..
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence            5789999999999999999988654     3668888843

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.96  E-value=0.0047  Score=55.72  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=26.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +..|++.|.+||||||++..|+..|   |..  +++.|
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l---~~~--~i~~d   37 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY---GLA--HLSTG   37 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence            4568999999999999999999877   443  45554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.95  E-value=0.0046  Score=65.06  Aligned_cols=73  Identities=22%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             CCcEEEEeCCCCccc-----cHHhHHHHHHHhhh-c-CCce-EEEEEecc---cHHHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           97 NVDVVIVDTAGRLQI-----DKAMMDELKDVKRV-L-NPTE-VLLVVDAM---TGQEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~-----d~~l~~el~~i~~~-~-~~~~-vllVvda~---~g~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                      ..+++|+|.||....     |......+..+... + .+.. +++++++.   ..+.+...+..+......+-+|+||.|
T Consensus       146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D  225 (608)
T 3szr_A          146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD  225 (608)
T ss_dssp             SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred             CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence            368999999975432     33333333443333 2 2333 45555542   235667777777666556668999998


Q ss_pred             CCCc
Q 015657          166 GDSR  169 (403)
Q Consensus       166 ~~~~  169 (403)
                      .-..
T Consensus       226 lv~~  229 (608)
T 3szr_A          226 LVDK  229 (608)
T ss_dssp             GSSS
T ss_pred             hcCc
Confidence            5543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.015  Score=58.64  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~   91 (403)
                      .+|+-|++.|+||+|||++|.++|..+   |.....+++....                     ..+. .....++..+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~---------------------~~~vGese~~ir~lF~  268 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV---------------------QMYIGEGAKLVRDAFA  268 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC---------------------SSCSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh---------------------hcccchHHHHHHHHHH
Confidence            467889999999999999999888766   5566656543110                     0111 12345566666


Q ss_pred             HHHhCCCcEEEEeC
Q 015657           92 EAKKKNVDVVIVDT  105 (403)
Q Consensus        92 ~~~~~~~D~VIIDt  105 (403)
                      .++....-+|+||-
T Consensus       269 ~A~~~aP~IifiDE  282 (434)
T 4b4t_M          269 LAKEKAPTIIFIDE  282 (434)
T ss_dssp             HHHHHCSEEEEEEC
T ss_pred             HHHhcCCeEEeecc
Confidence            66655677888885

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.90  E-value=0.0054  Score=57.95  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      |.+|+++|++||||||++..|+..+  .  ...+++.|.
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~--~--~~~~i~~D~   36 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN--P--GFYNINRDD   36 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS--T--TEEEECHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC--C--CcEEecccH
Confidence            5789999999999999998888632  2  355677773

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.90  E-value=0.0044  Score=54.29  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +.++++++|++||||||++..|+..+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35689999999999999999988765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.89  E-value=0.0052  Score=54.06  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      +|++.|.+||||||++..|+..|.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999998774

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.88  E-value=0.0039  Score=61.46  Aligned_cols=137  Identities=12%  Similarity=0.041  Sum_probs=69.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      +.++++|.+|+||||+...|..........+. +..-   |..         ......+..                   
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~---~gt---------T~~~~~~~~-------------------  210 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYF---PGT---------TLDMIEIPL-------------------  210 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEEC---TTS---------SCEEEEEEC-------------------
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCC---CCe---------EEeeEEEEe-------------------
Confidence            45889999999999999999876543322221 1110   110         000111111                   


Q ss_pred             CCCcEEEEeCCCCcccc---HH-hHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQID---KA-MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d---~~-l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                       +.++.||||||....+   .. ...++..+...-..+.+++++++...  ......+......-...-+++||.|....
T Consensus       211 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          211 -ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR  289 (369)
T ss_dssp             -STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred             -CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc
Confidence             2358999999987432   11 11222222211345778888888211  00000011111111234589999996532


Q ss_pred             ---hhHHHHHHHHhCCCeE
Q 015657          170 ---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~  185 (403)
                         ..+...+.+..|.++.
T Consensus       290 ~~~~~~~~~~~~~~g~~l~  308 (369)
T 3ec1_A          290 TKLEKADSLYANQLGELLS  308 (369)
T ss_dssp             EEGGGHHHHHHHHBTTTBC
T ss_pred             ccHHHHHHHHHHhcCCccC
Confidence               3344556667887763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.88  E-value=0.0053  Score=56.46  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=23.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +|.+|+++|++||||||++..|+..|
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998776

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.86  E-value=0.006  Score=54.89  Aligned_cols=39  Identities=18%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-----hCC-CcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-----KQG-KSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-----~~G-~kVllVd~D   52 (403)
                      -+.+++++|.+|+|||+.|..++..+.     +.| ++|.+..+|
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~   48 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK   48 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence            356889999999999999988766654     568 777666655

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.86  E-value=0.0047  Score=54.66  Aligned_cols=31  Identities=23%  Similarity=0.475  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|+|+|.+||||||++..|+..|   |  +.++|.|
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d   34 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence            89999999999999999888766   3  4466777

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.85  E-value=0.013  Score=57.27  Aligned_cols=73  Identities=22%  Similarity=0.372  Sum_probs=46.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +++-++++|++|+|||++|..+|..+   +..+..+++.        .+  ....     .  +   .....++..+..+
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~--------~l--~~~~-----~--g---~~~~~~~~~f~~a  139 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS--------DL--VSKW-----M--G---ESEKLVKQLFAMA  139 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHH--------HH--HSCC-------------CHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHH--------HH--hhhh-----c--c---hHHHHHHHHHHHH
Confidence            45668999999999999999999877   4556555532        11  0100     0  0   1123445555666


Q ss_pred             HhCCCcEEEEeCCCCc
Q 015657           94 KKKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l  109 (403)
                      ......+++||=...+
T Consensus       140 ~~~~~~vl~iDEid~l  155 (355)
T 2qp9_X          140 RENKPSIIFIDQVDAL  155 (355)
T ss_dssp             HHTSSEEEEEECGGGG
T ss_pred             HHcCCeEEEEechHhh
Confidence            5557789999965544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.84  E-value=0.0059  Score=54.94  Aligned_cols=33  Identities=30%  Similarity=0.436  Sum_probs=25.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +.+|+++|++||||||++..|+..+   |  +..++.|
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g   37 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG   37 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence            3579999999999999998888655   3  3345655

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.83  E-value=0.078  Score=47.66  Aligned_cols=21  Identities=43%  Similarity=0.626  Sum_probs=18.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .-|+++|.+||||||+...+.
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999997665

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.79  E-value=0.0042  Score=54.95  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=22.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++.+++++|++||||||++..|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45789999999999999998888665

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.77  E-value=0.0066  Score=55.38  Aligned_cols=34  Identities=29%  Similarity=0.337  Sum_probs=27.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+..|++.|.+||||||++..|+..|   |  +.+++.|
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d   48 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG   48 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence            45679999999999999999999887   3  3356654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=95.74  E-value=0.0079  Score=57.14  Aligned_cols=64  Identities=17%  Similarity=0.065  Sum_probs=36.1

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH----HHh---hhcCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTF---NIEIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~----~~~---~~~~~i~GvIlNk~D~~  167 (403)
                      .+.+.|+||||.-..... .   .  ...-..+.+++|+|...........    ..+   ....+ .-+|.||+|..
T Consensus       202 ~~~~~l~Dt~G~~~~~~~-~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~  272 (332)
T 2wkq_A          202 PVNLGLWDTAGLEDYDRL-R---P--LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLR  272 (332)
T ss_dssp             EEEEEEEEECCCGGGTTT-G---G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHH
T ss_pred             EEEEEEEeCCCchhhhHH-H---H--HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcc
Confidence            456779999996432110 0   0  1122458899999997654433322    122   22233 44889999954

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.71  E-value=0.042  Score=52.26  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ...|.++++.|++|+||||++..++..+   +.++..+++..
T Consensus        45 ~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~   83 (324)
T 3u61_B           45 GKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD   83 (324)
T ss_dssp             TCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence            3456788888999999999999988766   56666666543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.71  E-value=0.0059  Score=53.97  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=22.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +..+++++|++||||||++..|+..+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            45789999999999999999888664

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.71  E-value=0.017  Score=55.47  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      ++|.-.+..+++++|+.||||||+...|+..+.
T Consensus        73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            344445567899999999999999988875554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.70  E-value=0.032  Score=56.84  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=46.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .|+-++++|++|+||||++..+|..+   +..+..+++..+...                +.    .......+..+..+
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~----------------~~----g~~~~~~r~lf~~A  104 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL----------------FV----GVGAARVRDLFAQA  104 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC----------------CT----THHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH----------------Hh----cccHHHHHHHHHHH
Confidence            45568899999999999999988755   555555554311100                00    01233455666776


Q ss_pred             HhCCCcEEEEeCCCC
Q 015657           94 KKKNVDVVIVDTAGR  108 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~  108 (403)
                      ......+++||=+..
T Consensus       105 ~~~~p~ILfIDEid~  119 (476)
T 2ce7_A          105 KAHAPCIVFIDEIDA  119 (476)
T ss_dssp             HHTCSEEEEEETGGG
T ss_pred             HhcCCCEEEEechhh
Confidence            656788999997643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.69  E-value=0.026  Score=55.58  Aligned_cols=73  Identities=16%  Similarity=0.290  Sum_probs=45.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +++.++++|++|+|||+++..+|..   .+..+..++|........                 +   .....+...+..+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~~-----------------g---~~~~~~~~~~~~a  203 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKYV-----------------G---EGEKLVRALFAVA  203 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC---------------------------CHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhcccc-----------------c---hHHHHHHHHHHHH
Confidence            4577999999999999999888755   366777776642221110                 0   0123344555555


Q ss_pred             HhCCCcEEEEeCCCCc
Q 015657           94 KKKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l  109 (403)
                      ......+++||=...+
T Consensus       204 ~~~~~~il~iDEid~l  219 (389)
T 3vfd_A          204 RELQPSIIFIDQVDSL  219 (389)
T ss_dssp             HHSSSEEEEEETGGGG
T ss_pred             HhcCCeEEEEECchhh
Confidence            5556689999966443

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.68  E-value=0.0069  Score=54.19  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .|+|+|++||||||++..|+..+   |..  +++.|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~--~i~~d   32 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY---EIP--HISTG   32 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---CCc--EeeHH
Confidence            47889999999999998888766   443  45553

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.67  E-value=0.0062  Score=54.81  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=23.9

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ...++++++++|++||||||++..|+..+
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            34466889999999999999999888654

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=95.66  E-value=0.071  Score=54.59  Aligned_cols=166  Identities=20%  Similarity=0.273  Sum_probs=93.6

Q ss_pred             CEEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHHHHhhh-------------------ccC
Q 015657           15 PTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGE-------------------QVG   70 (403)
Q Consensus        15 ~~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l~~~~~-------------------~~g   70 (403)
                      .+.|+++|-  +|.||-.+|+.|+..|+.+|++|.++..|||-   |+...+.. +++                   -.+
T Consensus         3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gtmsp~~-hgevfv~~dg~e~dldlg~yerf~~   81 (535)
T 3nva_A            3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGTMNPYM-HGEVFVTEDGAETDLDLGHYERFMD   81 (535)
T ss_dssp             CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTTCCHHH-HCCCEECTTCCEECTHHHHHHHHHC
T ss_pred             ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCCCCCccc-cceEEEecCCccccccccchhhhcC
Confidence            578899976  99999999999999999999999999999973   33321110 111                   000


Q ss_pred             Cce-----Ee-----------------CCCCCC--H--HHHHHHHHHHH-HhCCCcEEEEeCCCCccc--cHHhHHHHHH
Q 015657           71 VPV-----YT-----------------AGTEVK--P--SQIAKQGLEEA-KKKNVDVVIVDTAGRLQI--DKAMMDELKD  121 (403)
Q Consensus        71 v~v-----~~-----------------~~~~~~--~--~~~~~~~l~~~-~~~~~D~VIIDtpg~l~~--d~~l~~el~~  121 (403)
                      +..     ++                 .+....  |  .+.+++.+..+ +..++|++||+-.|...+  ....++.+.+
T Consensus        82 ~~l~~~~n~ttg~iy~~vi~ker~g~ylg~tvqviphit~eik~~i~~~~~~~~~dv~i~eiggtvgdies~pf~ea~rq  161 (535)
T 3nva_A           82 VNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKINNAEITLVEIGGTVGDIESLPFLEAVRQ  161 (535)
T ss_dssp             CCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCTTSGGGHHHHHHHHH
T ss_pred             CCcccccCcchhHHHHHHHHHHhcCCcCCCeeEECCCchHHHHHHHHHhhccCCCCEEEEEeCCccchhcccHHHHHHHH
Confidence            000     00                 000000  1  11233334333 236899999998887754  3457777788


Q ss_pred             HhhhcCCceEEEEE----ec--cc-------HHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCe
Q 015657          122 VKRVLNPTEVLLVV----DA--MT-------GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI  184 (403)
Q Consensus       122 i~~~~~~~~vllVv----da--~~-------g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi  184 (403)
                      +...+....++++-    ..  ..       .|..+..++..  .+.+. +|+-|.+..-....-..+.-.+.++-
T Consensus       162 ~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~Lrs~--GIqPd-ilvcRs~~~l~~~~r~KiaLfc~V~~  234 (535)
T 3nva_A          162 LKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRI--GIQPD-FIVGRATLPLDDETRRKIALFTNVKV  234 (535)
T ss_dssp             HHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHHHHH--TCCCS-EEEEEESSCCCHHHHHHHHHHTTCCG
T ss_pred             HHHHhCCCCEEEEEeeccceecCCCcccCCchHHHHHHHHhC--CCCCC-EEEEecCCCCCHHHHHhhhhhcCCCh
Confidence            87777666665541    11  11       25555554433  23344 44445554433333344444455543

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=95.63  E-value=0.039  Score=50.25  Aligned_cols=97  Identities=12%  Similarity=0.103  Sum_probs=56.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhccCC--ceEeCCCCCCHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGV--PVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~gv--~v~~~~~~~~~~~~~~~~   89 (403)
                      ....+.+++|.-|+||||.+..++..+..+|++|+++..-. .|.. ..   ......|+  +......   +.++    
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~-~~---~I~Sr~G~~~~a~~v~~---~~di----   94 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYH-KE---KVVSHNGNAIEAINISK---ASEI----   94 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC---------------CBTTBCCEEEEESS---GGGG----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcch-hh---hHHHhcCCceeeEEeCC---HHHH----
Confidence            45689999999999999999888999998999999885421 1111 01   12222332  2322211   1111    


Q ss_pred             HHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHh
Q 015657           90 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK  123 (403)
Q Consensus        90 l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~  123 (403)
                      ++.+ ..++|+|+||=+-.+.  ...+..+..+.
T Consensus        95 ~~~i-~~~~dvV~IDEaQFf~--~~~v~~l~~la  125 (219)
T 3e2i_A           95 MTHD-LTNVDVIGIDEVQFFD--DEIVSIVEKLS  125 (219)
T ss_dssp             GGSC-CTTCSEEEECCGGGSC--THHHHHHHHHH
T ss_pred             HHHH-hcCCCEEEEechhcCC--HHHHHHHHHHH
Confidence            1111 2579999999888764  34455555554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.62  E-value=0.014  Score=54.54  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~   51 (403)
                      .+..+++++|+.||||||+...|+..+... .-+|.+..-
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~   62 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED   62 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence            355789999999999999999999988754 456655443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.61  E-value=0.063  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLAN   37 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~   37 (403)
                      --|+++|.+|+||||+...|+.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            3468999999999999988763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.029  Score=56.34  Aligned_cols=69  Identities=20%  Similarity=0.339  Sum_probs=46.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC-CHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV-KPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~-~~~~~~~~~l~   91 (403)
                      .+|+-|++.|+||+|||++|.++|..+   |.....+++.-.-                     ..+. .....++..+.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~---------------------sk~vGesek~ir~lF~  269 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI---------------------QKYLGDGPRLCRQIFK  269 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC---------------------CSSSSHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh---------------------hccCchHHHHHHHHHH
Confidence            467889999999999999999988766   4555555533100                     0111 13345677777


Q ss_pred             HHHhCCCcEEEEeC
Q 015657           92 EAKKKNVDVVIVDT  105 (403)
Q Consensus        92 ~~~~~~~D~VIIDt  105 (403)
                      .++....-+|+||-
T Consensus       270 ~Ar~~aP~IIfiDE  283 (437)
T 4b4t_I          270 VAGENAPSIVFIDE  283 (437)
T ss_dssp             HHHHTCSEEEEEEE
T ss_pred             HHHhcCCcEEEEeh
Confidence            77666677888883

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=95.59  E-value=0.023  Score=58.87  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHH--hCC--CcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQG--KSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~--~~G--~kVllVd~D~~   54 (403)
                      ...++++|+|++|+||||++..++....  ...  ..|..++.+..
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            4578999999999999999998876432  112  24666666544

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.57  E-value=0.01  Score=53.28  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .|+++|.+||||||++..|+..+   |..+  ++.|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~--i~~d   32 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY---GIPQ--ISTG   32 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence            37899999999999999998876   5544  4543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.53  E-value=0.013  Score=52.73  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      +.|+|-|.-||||||.+..|+.+|. +|++|.+.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~   35 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT   35 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence            5788999999999999999999996 58888654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.52  E-value=0.013  Score=58.35  Aligned_cols=35  Identities=34%  Similarity=0.548  Sum_probs=29.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ++.+|+|+|++||||||++..||..+.     ..+|.+|.
T Consensus         1 ~~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds   35 (409)
T 3eph_A            1 SKKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS   35 (409)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred             CCcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence            357899999999999999999998774     34788884

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.49  E-value=0.022  Score=54.82  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      ++++|++|+||||++..+|..+...+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~   74 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKN   74 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence            88999999999999999999886543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.46  E-value=0.0061  Score=55.26  Aligned_cols=33  Identities=27%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +++|.-.+..+++|+|++||||||+...|+..+
T Consensus        15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            445555567889999999999999999998766

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.46  E-value=0.0093  Score=53.88  Aligned_cols=85  Identities=27%  Similarity=0.361  Sum_probs=46.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      +|++.|+|||||||.|..|+..+   |... +-.+|..|...... ..++...  .-+......-|.+++...+.... .
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~---g~~~-istGdllR~~i~~~-t~lg~~~--~~~~~~G~lvpd~iv~~lv~~~l-~   73 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK---GFVH-ISTGDILREAVQKG-TPLGKKA--KEYMERGELVPDDLIIALIEEVF-P   73 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH---CCEE-EEHHHHHHHHHHHT-CHHHHHH--HHHHHHTCCCCHHHHHHHHHHHC-C
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH---CCeE-EcHHHHHHHHHHhc-ChhhhhH--HHHHhcCCcCCHHHHHHHHHHhh-c
Confidence            57888999999999999998766   4432 44556555322100 0000000  00001112335566655555543 4


Q ss_pred             CCcEEEEeCCCCc
Q 015657           97 NVDVVIVDTAGRL  109 (403)
Q Consensus        97 ~~D~VIIDtpg~l  109 (403)
                      ..+-+|+|+=|+-
T Consensus        74 ~~~~~ilDGfPRt   86 (206)
T 3sr0_A           74 KHGNVIFDGFPRT   86 (206)
T ss_dssp             SSSCEEEESCCCS
T ss_pred             cCCceEecCCchh
Confidence            4566889986654

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=95.45  E-value=0.054  Score=50.74  Aligned_cols=55  Identities=5%  Similarity=-0.018  Sum_probs=41.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP   72 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~   72 (403)
                      +.++++++|.+|+||||++..++....++|.+++++..+-..    .++.......|++
T Consensus        20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~----~~l~~~~~~~G~d   74 (260)
T 3bs4_A           20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL----QLIIRILSRFGVD   74 (260)
T ss_dssp             TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCH----HHHHHHHHHTTCC
T ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCH----HHHHHHHHHcCCC
Confidence            458888999999999999999999989999999999987332    2333344444544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.44  E-value=0.031  Score=57.49  Aligned_cols=40  Identities=23%  Similarity=0.252  Sum_probs=29.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH-HHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA-~~L~~~G~kVllVd~D~   53 (403)
                      +..+++++|++||||||++..++ ..+...+..+++++...
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            55789999999999999999953 33434345566777654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.44  E-value=0.0075  Score=53.76  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=22.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .++++++|++||||||+...|+..+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            46789999999999999999987664

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.42  E-value=0.0076  Score=53.97  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .|+|+|++||||||++..|+..+   |..  +++.|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~--~i~~d   32 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY---GIP--HISTG   32 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS---SCC--EEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---CCc--EEeHH
Confidence            47889999999999998887554   443  45553

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.41  E-value=0.23  Score=45.02  Aligned_cols=123  Identities=20%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHH-HHhCCC--cEEEEeccCCChhhHHHHHHhhhccC----CceE-eCC-------C-
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANY-LKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVG----VPVY-TAG-------T-   78 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~-L~~~G~--kVllVd~D~~rp~~~~~l~~~~~~~g----v~v~-~~~-------~-   78 (403)
                      .+.++++|+.||||||+...+... +...+.  .+.++-..+.+..+...........+    ..+- ...       . 
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  155 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPH  155 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSS
T ss_pred             CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCC
Confidence            367899999999999876655443 333333  33344444555444332222222111    1110 000       0 


Q ss_pred             ----CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhH-HHHHHHhhhcCCceEEEEEecccH
Q 015657           79 ----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM-DELKDVKRVLNPTEVLLVVDAMTG  140 (403)
Q Consensus        79 ----~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~-~el~~i~~~~~~~~vllVvda~~g  140 (403)
                          ...|..+. +.+.. .-.+++++|||-+-....+.... ..+..+.... ++.-+++..|+..
T Consensus       156 ~~Ivv~Tpg~l~-~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~  219 (235)
T 3llm_A          156 ASIMFCTVGVLL-RKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATID  219 (235)
T ss_dssp             SEEEEEEHHHHH-HHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSC
T ss_pred             CeEEEECHHHHH-HHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCC
Confidence                01233222 22322 13688999999987643443333 3444444433 3445677777544

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.37  E-value=0.015  Score=54.62  Aligned_cols=37  Identities=32%  Similarity=0.508  Sum_probs=30.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      .+..++++|++|+|||+++..++..+   +.++..+++..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~   85 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK   85 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence            45678899999999999999999887   56777777653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.36  E-value=0.047  Score=54.25  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .+..++++|.+||||||+...|.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Lt   43 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLT   43 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34558999999999999998887

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.36  E-value=0.01  Score=54.75  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|.+|+++|++||||||++..|+..|   |  ..+++.|
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g   41 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTG   41 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCC
Confidence            46789999999999999999998776   3  3356665

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.35  E-value=0.015  Score=52.39  Aligned_cols=33  Identities=33%  Similarity=0.551  Sum_probs=26.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+.|+|+|++|+||||++..|+    ++|.  -+|..|
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdD   65 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELV----QRGH--RLIADD   65 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence            35779999999999999996655    5566  467777

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.34  E-value=0.016  Score=58.40  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+++-++++|++|+|||+++..+|..+  .+..+..+++.
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~  202 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS  202 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence            356789999999999999999998776  24555555543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.32  E-value=0.068  Score=57.84  Aligned_cols=36  Identities=39%  Similarity=0.553  Sum_probs=28.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      .+|+-|++.|++|+|||+++.++|..+   |..+..|++
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~  271 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING  271 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh
Confidence            568899999999999999998877543   666666664

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.32  E-value=0.012  Score=61.22  Aligned_cols=39  Identities=33%  Similarity=0.610  Sum_probs=33.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D   52 (403)
                      +..+++++|++||||||++..|+..+... |..+.++|.|
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence            56889999999999999999999999765 4578788887

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.30  E-value=0.022  Score=61.31  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..++++|++|+|||++|..|+..+...+.++..++|.
T Consensus       522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s  558 (758)
T 3pxi_A          522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS  558 (758)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence            4689999999999999999999998778888888875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.28  E-value=0.012  Score=53.46  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      .|++.|++||||||++..|+..|
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998877

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.25  E-value=0.068  Score=52.59  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANY   38 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~   38 (403)
                      .++++|.+||||||+...|...
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999888754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.20  E-value=0.011  Score=58.29  Aligned_cols=137  Identities=12%  Similarity=0.096  Sum_probs=67.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      ..++++|.+|+||||+...|.........+...+..   .|..     +.    ....+..                   
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~---~~gt-----T~----~~~~~~~-------------------  209 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH---FPGT-----TL----DLIDIPL-------------------  209 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC---CC-------------CEEEEES-------------------
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCC---CCCe-----ec----ceEEEEe-------------------
Confidence            458899999999999998887654211001111110   1111     00    0111111                   


Q ss_pred             CCCcEEEEeCCCCcccc---H-HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQID---K-AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d---~-~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                       ...+.||||||....+   . -...++..+...-..+.+++++++...  ......+..+...-...-+++||.|....
T Consensus       210 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          210 -DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             -SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred             -cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence             2348999999986532   1 112233333323345677888887210  00000011111111234589999996543


Q ss_pred             h---hHHHHHHHHhCCCe
Q 015657          170 G---GAALSVKEVSGKPI  184 (403)
Q Consensus       170 ~---~~~~~~~~~~g~pi  184 (403)
                      .   .+...+.+..|.++
T Consensus       289 ~~~~~~~~~~~~~~g~~l  306 (368)
T 3h2y_A          289 TKLEKADELYKNHAGDLL  306 (368)
T ss_dssp             EEHHHHHHHHHHHBTTTB
T ss_pred             ccHHHHHHHHHHHhCCcc
Confidence            2   33344556677766

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.20  E-value=0.018  Score=58.49  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      ..-++++|++|+||||++..||..+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            345689999999999999999998875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.18  E-value=0.0061  Score=55.41  Aligned_cols=32  Identities=34%  Similarity=0.381  Sum_probs=19.1

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHH-HHH
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLA-NYL   39 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA-~~L   39 (403)
                      +++.-.+..+++++|+.||||||++..|+ ..+
T Consensus        20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            44444556889999999999999998888 665

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.15  E-value=0.012  Score=51.42  Aligned_cols=33  Identities=33%  Similarity=0.579  Sum_probs=24.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+++++|++||||||++..|+..   .+.. ..++.|
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~---~~g~-~~i~~d   35 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ---LDNS-AYIEGD   35 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH---SSSE-EEEEHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc---cCCe-EEEccc
Confidence            57899999999999999988752   2223 356655

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.12  E-value=0.029  Score=56.58  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=27.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      +++-++++|++|+|||++|..+|..+... ..+..++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~   97 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMV   97 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEE
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEe
Confidence            45778999999999999999999887432 3444444

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.10  E-value=0.018  Score=53.30  Aligned_cols=43  Identities=14%  Similarity=0.246  Sum_probs=34.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      +..++++|.+|+|||+++..++..+...+.++..++|....+.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~   71 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN   71 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence            3557899999999999999998877766778888888765443

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.06  E-value=0.013  Score=53.71  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      +|.+|++.|..||||||++..|+.+|.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            468899999999999999999998774

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.99  E-value=0.014  Score=54.15  Aligned_cols=26  Identities=38%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +..+|+|+|+.||||||++..|+..|
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            44689999999999999998887554

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.97  E-value=0.011  Score=53.01  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=26.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      |.+|+++|.+||||||++..|+..+   |  ..++|+|
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d   35 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL---S--MIYVDTG   35 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc---C--CceecCC
Confidence            5679999999999999998887554   4  3467776

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.92  E-value=0.054  Score=60.52  Aligned_cols=42  Identities=17%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh----CCCcEEEEeccC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVAGDV   53 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~----~G~kVllVd~D~   53 (403)
                      ...+++|.|+|+||+||||+|..++.....    ....|..++...
T Consensus       144 ~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~  189 (1249)
T 3sfz_A          144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK  189 (1249)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred             cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence            356799999999999999999988876432    223566666554

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.88  E-value=0.091  Score=54.18  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLAN   37 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~   37 (403)
                      ..++|.|+|.||+||||+|..++.
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            579999999999999999988775

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.83  E-value=0.043  Score=51.73  Aligned_cols=26  Identities=46%  Similarity=0.552  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQ   42 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~   42 (403)
                      .++++|++|+||||++..++..+...
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~   73 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGE   73 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCC
Confidence            38999999999999999999887643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.83  E-value=0.028  Score=55.32  Aligned_cols=37  Identities=16%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .-++|+|++|+||||++..|+..+...|.+|.++|.+
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3468899999999999999999888889999888754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.78  E-value=0.019  Score=49.58  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=25.9

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +.-.+..++++.|+.|+||||+...|+..+
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            333566899999999999999999999887

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.77  E-value=0.05  Score=59.34  Aligned_cols=77  Identities=22%  Similarity=0.257  Sum_probs=0.0

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-------CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCH
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKP   82 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-------~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~   82 (403)
                      +....+..++++|++|+||||++..||..+..       .+.++..+++                  +..+.........
T Consensus       186 l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~------------------~~l~~g~~~~g~~  247 (854)
T 1qvr_A          186 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM------------------GSLLAGAKYRGEF  247 (854)
T ss_dssp             HHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------------------------CH
T ss_pred             HhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh------------------HHhhccCccchHH


Q ss_pred             HHHHHHHHHHHHhC-CCcEEEEe
Q 015657           83 SQIAKQGLEEAKKK-NVDVVIVD  104 (403)
Q Consensus        83 ~~~~~~~l~~~~~~-~~D~VIID  104 (403)
                      ...++..+..+... ..-+++||
T Consensus       248 ~~~l~~~~~~~~~~~~~~iL~ID  270 (854)
T 1qvr_A          248 EERLKAVIQEVVQSQGEVILFID  270 (854)
T ss_dssp             HHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEe

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.75  E-value=0.077  Score=51.27  Aligned_cols=114  Identities=14%  Similarity=0.145  Sum_probs=59.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      +..+++++|++||||||+...|+..+......|.+-+.+......      +  ...+.++. +...    ..+.++..+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~------~--~~~i~~~~-ggg~----~~r~~la~a  236 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH------H--KNYTQLFF-GGNI----TSADCLKSC  236 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS------C--SSEEEEEC-BTTB----CHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc------c--hhEEEEEe-CCCh----hHHHHHHHH
Confidence            345789999999999999999887765544455443332111100      0  01111221 1111    223344444


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCc-eEEEEEecccHHHHHHHH
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT-EVLLVVDAMTGQEAAALV  147 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~-~vllVvda~~g~~~~~~~  147 (403)
                      ...+.|++|+|=|...    .....+..+.   .-. .++++..+.........+
T Consensus       237 L~~~p~ilildE~~~~----e~~~~l~~~~---~g~~tvi~t~H~~~~~~~~dri  284 (330)
T 2pt7_A          237 LRMRPDRIILGELRSS----EAYDFYNVLC---SGHKGTLTTLHAGSSEEAFIRL  284 (330)
T ss_dssp             TTSCCSEEEECCCCST----HHHHHHHHHH---TTCCCEEEEEECSSHHHHHHHH
T ss_pred             hhhCCCEEEEcCCChH----HHHHHHHHHh---cCCCEEEEEEcccHHHHHhhhh
Confidence            4578999999987752    2222222221   112 356666665444443333

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.74  E-value=0.15  Score=50.58  Aligned_cols=49  Identities=20%  Similarity=0.252  Sum_probs=35.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCCChhhHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQL   62 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~rp~~~~~l   62 (403)
                      .+...++++|++|+||||++..|+....+.  +..|.++.++ .|+..+..+
T Consensus       172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG-ER~~Ev~~~  222 (422)
T 3ice_A          172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID-ERPEEVTEM  222 (422)
T ss_dssp             BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES-SCHHHHHHH
T ss_pred             cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec-CChHHHHHH
Confidence            345668999999999999999999988764  3445556555 555555444

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.72  E-value=0.044  Score=55.98  Aligned_cols=71  Identities=27%  Similarity=0.437  Sum_probs=45.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..++-++++|++|+|||+++..++..+   +..+..++|.        .+.  ..          ........++..+..
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~--------~l~--~~----------~~g~~~~~~~~~f~~  292 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP--------EIM--SK----------LAGESESNLRKAFEE  292 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH--------HHH--TS----------CTTHHHHHHHHHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch--------Hhh--hh----------hcchhHHHHHHHHHH
Confidence            456778999999999999998887654   6667666653        110  00          001122344566666


Q ss_pred             HHhCCCcEEEEeCC
Q 015657           93 AKKKNVDVVIVDTA  106 (403)
Q Consensus        93 ~~~~~~D~VIIDtp  106 (403)
                      +......+++||=.
T Consensus       293 A~~~~p~iLfLDEI  306 (489)
T 3hu3_A          293 AEKNAPAIIFIDEL  306 (489)
T ss_dssp             HHHTCSEEEEEESH
T ss_pred             HHhcCCcEEEecch
Confidence            65556678999853

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=94.72  E-value=0.023  Score=53.99  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=27.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      .+++.++++|++|+||||++..+|..+   +.....+++
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~   82 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG   82 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEh
Confidence            456789999999999999999988765   445555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	2e-64
d1okkd2	207	c.37.1.10 (D:97-303) GTPase domain of the signal r	6e-64
d1ls1a2	207	c.37.1.10 (A:89-295) GTPase domain of the signal s	7e-62
d1j8yf2	211	c.37.1.10 (F:87-297) GTPase domain of the signal s	6e-61
d1vmaa2	213	c.37.1.10 (A:82-294) GTPase domain of the signal r	3e-60
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	7e-32
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-31
d1qzxa2	138	a.36.1.1 (A:295-432) Signal sequence binding prote	3e-29
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	3e-25
d1qb2a_	107	a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId:	6e-23
d1hq1a_	104	a.36.1.1 (A:) Signal sequence binding protein Ffh	9e-23
d2ffha2	100	a.36.1.1 (A:319-418) Signal sequence binding prote	8e-21
d1dula_	69	a.36.1.1 (A:) Signal sequence binding protein Ffh	4e-18
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-11
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	5e-08
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	6e-06
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	1e-05
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	2e-05
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	3e-05
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	6e-05
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	7e-05
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	7e-05
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	9e-05
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	1e-04
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	2e-04
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	2e-04
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	2e-04
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	3e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	3e-04
d1gsia_	208	c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tu	4e-04
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	7e-04
d2afhe1	289	c.37.1.10 (E:1-289) Nitrogenase iron protein {Azot	7e-04
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	0.001
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	0.001
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.001
d1byia_	224	c.37.1.10 (A:) Dethiobiotin synthetase {Escherichi	0.001
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	0.001
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.001
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	0.002
d2ocpa1	241	c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (	0.002
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.003
d1tmka_	214	c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (S	0.003
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.003
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.004

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score =  203 bits (517), Expect = 2e-64
 Identities = 89/209 (42%), Positives = 124/209 (59%), Gaps = 6/209 (2%)

Query: 8   LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE 67
           L      P VIL+ G+ GVGKTT   KLA   ++QGKS ML AGD +R AA++QL + G+
Sbjct: 2   LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ 61

Query: 68  QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 127
           +  +PV    T    + +    ++ AK +N+DV+I DTAGRLQ    +M+ELK + RV+ 
Sbjct: 62  RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMK 121

Query: 128 ------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 181
                 P EV+L +DA TGQ A +    F+  +G+TG  LTKLDG ++GG   SV +  G
Sbjct: 122 KLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFG 181

Query: 182 KPIKLVGRGERMEDLEPFYPDRMAGRILG 210
            PI+ +G GER+EDL PF  D     +  
Sbjct: 182 IPIRYIGVGERIEDLRPFKADDFIEALFA 210

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

 Score =  201 bits (513), Expect = 6e-64
 Identities = 79/204 (38%), Positives = 114/204 (55%), Gaps = 6/204 (2%)

Query: 12  KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
           + +  V+L+ G+ GVGKTT  AKL  Y +  GK  M  AGD +R A   QL   G+++ +
Sbjct: 3   EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI 62

Query: 72  PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL----- 126
           PV        P+ +A   ++  K +  D++ VDTAGRL     +M+ELK VKR +     
Sbjct: 63  PVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADP 122

Query: 127 -NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 185
             P EV LV+DA+TGQ        F+  +G+TG I+TKLDG ++GG  + +      PIK
Sbjct: 123 EEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIK 182

Query: 186 LVGRGERMEDLEPFYPDRMAGRIL 209
            VG GE  +DL+PF P+     +L
Sbjct: 183 FVGVGEGPDDLQPFDPEAFVEALL 206

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score =  196 bits (499), Expect = 7e-62
 Identities = 110/201 (54%), Positives = 143/201 (71%)

Query: 12  KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 71
                +  L GLQG GKTT +AKLA Y K +G+  +LVA D  RPAA +QL +LGE+VGV
Sbjct: 7   LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV 66

Query: 72  PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 131
           PV        P  I ++  E+A+ +  D+++VDTAGRLQID+ +M EL  +K VL P EV
Sbjct: 67  PVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEV 126

Query: 132 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 191
           LLV+DAMTGQEA ++   F+ ++G+TG +LTKLDGD+RGGAALS + V+GKPI   G  E
Sbjct: 127 LLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE 186

Query: 192 RMEDLEPFYPDRMAGRILGMG 212
           + E LEPFYP+R+AGRILGMG
Sbjct: 187 KPEGLEPFYPERLAGRILGMG 207

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

 Score =  194 bits (493), Expect = 6e-61
 Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 2/209 (0%)

Query: 4   EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
           +    V     P VI+L G+QG GK T + KLA + KK+G    LV  DVYRPAA++QL 
Sbjct: 1   DKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQ 60

Query: 64  ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM--DELKD 121
            LG+Q+GVPVY    E     IAK+G+E+   + ++++IVDTAGR    +     +E+K+
Sbjct: 61  QLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKN 120

Query: 122 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 181
           +   + P EV LV+DA  GQ+A  L + FN    I   I+TK+DG ++GG ALS    +G
Sbjct: 121 IYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATG 180

Query: 182 KPIKLVGRGERMEDLEPFYPDRMAGRILG 210
             IK +G GE++++LE F P R   R+  
Sbjct: 181 ATIKFIGTGEKIDELEVFNPRRFVARLHH 209

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

 Score =  192 bits (489), Expect = 3e-60
 Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 6/211 (2%)

Query: 6   SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 65
           ++L      P VI++ G+ G GKTT   KLA     +GKS +L A D +R AAI+QL I 
Sbjct: 2   TKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIW 61

Query: 66  GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 125
           GE+VG  V +      P+ +A   +  A  +N DVVI+DTAGRL   K +M+EL+ V RV
Sbjct: 62  GERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRV 121

Query: 126 LN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 179
           +       P E LLV+DA TGQ        F   + +TG ILTKLDG ++GG  L++   
Sbjct: 122 VKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARE 181

Query: 180 SGKPIKLVGRGERMEDLEPFYPDRMAGRILG 210
            G PIK +G GE+ EDL PF P+     +L 
Sbjct: 182 LGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 212

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score =  117 bits (293), Expect = 7e-32
 Identities = 32/179 (17%), Positives = 73/179 (40%), Gaps = 2/179 (1%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 76
           V+++ G+ GVG TT S    + L+K+G +  +V+          +  ++ ++  +     
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62

Query: 77  GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVD 136
            T+ +  ++A + + E  K+    V VDT   +   K  +  L          ++++VV+
Sbjct: 63  ETQKRIQKMAGRKIAEMAKE--SPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 137 AMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 195
               +     ++       +  A   +        AA+S   ++G  +K+V     + D
Sbjct: 121 TTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLD 179

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score =  114 bits (286), Expect = 8e-31
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 9/195 (4%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKS-CMLVAGDVYRPAAIDQLVILGEQVGVPVYT 75
           + ++ G+ GVGK+TV AK+   L  QG +  ++  GD     A+             +  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 76  AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE-LKDVKRVLNPTEVLLV 134
              +      AK   EEA+      + +DT   ++     +      V   +NP+ + L+
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122

Query: 135 VDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERME 194
                   +     T       +   +     +    AA +   ++G  +K++   E   
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEG-- 180

Query: 195 DLEPFYPDRMAGRIL 209
                 P   A  I+
Sbjct: 181 -----DPSIAANEII 190

>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 138

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  108 bits (271), Expect = 3e-29
 Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 8/139 (5%)

Query: 212 GDVLSFVEKAQEVMQQEDAEEMQKKIMSA--NFDFNDFLKQTRTVARMGSMSRVIGMIPG 269
           GD+ S +EK + + + +  ++  + +M         D   Q   + +MG +S+V+  IPG
Sbjct: 1   GDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPG 60

Query: 270 MGKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQ 325
           +G + P     Q++  E+ ++   A + +MT +E E P ++ +S  R +R+A+ SG   +
Sbjct: 61  LGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKS--RMRRIAEGSGLEVE 118

Query: 326 QVSQLVAQLFQMRVRMKNL 344
           +V +L+     M   +K +
Sbjct: 119 EVRELLEWYNNMNRLLKMV 137

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 3e-25
 Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 28/214 (13%)

Query: 15  PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 74
           PT+I++ GL   GKT +S KL  YL   G          YR   +         +     
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 75  TAGTEVK-PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV-------- 125
                 +          +   ++   V + D     +  +AM+    +            
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 126 --------LNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVK 177
                    N  +V L       +++      F   I         LD +     +    
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLS---- 177

Query: 178 EVSGKPIKLVGRGERME--DLEPFYPDRMAGRIL 209
                 IK++  G+      +      R+   ++
Sbjct: 178 -----YIKIMDVGQSYVVNRVADHIQSRIVYYLM 206

>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: SRP54M
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (224), Expect = 6e-23
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPEE 299
           F   D  +Q + + +MG  S+++GMIPG G         +E+   LK +  ++++M  +E
Sbjct: 2   FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE 61

Query: 300 REKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 342
            +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K
Sbjct: 62  LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVK 107

>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]} Length = 104

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

 Score = 90.0 bits (223), Expect = 9e-23
 Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEER 300
           FD NDFL+Q R +  MG M+ ++G +PGMG+I    + +  +K L  MEA+I +MT +ER
Sbjct: 2   FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKER 61

Query: 301 EKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
            KPE++  S  R++R+A  SG   Q V++L+ Q   M+  MK +
Sbjct: 62  AKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 103

>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 100

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score = 84.2 bits (208), Expect = 8e-21
 Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 6/103 (5%)

Query: 242 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEERE 301
               DFLKQ + + R+G  S ++G++PG+ +         EK++K +EA++ +MTPEER+
Sbjct: 2   LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGLKVD----EKAIKRLEAIVLSMTPEERK 57

Query: 302 KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 344
            P +L  S  RRKR+A+ SG + Q+V++ +    +M+  MK+L
Sbjct: 58  DPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 98

>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]} Length = 69

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

 Score = 75.9 bits (187), Expect = 4e-18
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 282 EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 341
           +K L  MEA+I +MT +ER KPE++  S  R++R+A  SG   Q V++L+ Q   M+  M
Sbjct: 9   QKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQRMM 66

Query: 342 KNL 344
           K +
Sbjct: 67  KKM 69

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 1e-11
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 23/174 (13%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY---------------------- 54
            + L G  GVGKTT+  K +  LK  G        +                        
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62

Query: 55  RPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKA 114
           R            +VG  V    +  + +    +  + +      V ++D  G++++   
Sbjct: 63  RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122

Query: 115 MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDS 168
           +  +    + +  P  ++L    +   +  ALV        +    +TK + + 
Sbjct: 123 LFIQAVR-QTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNH 175

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 51.5 bits (122), Expect = 5e-08
 Identities = 34/287 (11%), Positives = 86/287 (29%), Gaps = 42/287 (14%)

Query: 11  AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG 70
           A   PT  LL G  G GKT++ + +    +        +  D ++    +   ++     
Sbjct: 28  AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV---IDNDTFKQQHPNFDELVKLYEK 84

Query: 71  VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE 130
             V         +++ +  +     +  ++VI  T     +       L+          
Sbjct: 85  DVV--KHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGY------ 136

Query: 131 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 190
               +  M   +  + + T              +  D    A  + K+     +K +   
Sbjct: 137 -ETKMYVMAVPKINSYLGTIE--------RYETMYADDPMTARATPKQAHDIVVKNLP-- 185

Query: 191 ERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 250
               +LE  +   +   I         +  + E       +E  +K ++      +    
Sbjct: 186 ---TNLETLHKTGLFSDIRLYNREGVKLYSSLET-PSISPKETLEKELNRKVSGKEIQP- 240

Query: 251 TRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTP 297
                   ++ R+        K+   + +E  +  K ++  +E++ P
Sbjct: 241 --------TLERIE------QKMVLNKHQETPE-FKAIQQKLESLQP 272

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 25 GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58
          G GKTT++A L   L + G    +V  D+     
Sbjct: 12 GTGKTTITANLGVALAQLGHDVTIVDADITMANL 45

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 17 VILLAGLQ-GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58
          +I +   + G GKTTV+A L+  L  +G+  + V GD+     
Sbjct: 4  IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANL 46

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52
          F ++ P  +   G  GVGKT++S   A  L +QGK  +LV+ D
Sbjct: 3  FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 8  LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54
          L    +   V+ + GL   GKTT++ +L+  L++QG S  +   D +
Sbjct: 15 LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ 42
              P  I  +G QG GK+  S ++ N+L ++
Sbjct: 23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 54

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYR 55
          +   I L G    GK  ++  L   L +QG +S  L+ GD  R
Sbjct: 5  QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 47

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 19/42 (45%), Positives = 21/42 (50%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 55
          R   + L GL G GKTTVS  L  YL   G  C  + GD  R
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 59

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 4/218 (1%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-QVGVPVYT 75
            + + G  G+GK+T +  L + L   GK+ M+V  D    +    L  L +  V   +  
Sbjct: 3   QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLRE 62

Query: 76  AGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQID-KAMMDELKDVKRVLNPTEVL 132
            G +V+   I K+G    +          V  AGR  I    M+++L      L+     
Sbjct: 63  EGEDVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYD 122

Query: 133 LVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 192
           ++ D + G  A  +      EI I  +        +   +    K      ++L G    
Sbjct: 123 VLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICN 182

Query: 193 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDA 230
              +   Y    A        ++ FV ++  V + E  
Sbjct: 183 SRKVANEYELLDAFAKELGSQLIHFVPRSPMVTKAEIN 220

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58
           A++   +I+L G  GVGKTT++A +A  L   G    L   D     +
Sbjct: 15 IARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLS 63

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54
          +  +I + G  G G +TV        +++G   + + GD +
Sbjct: 3  KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYLK 40
          KS+P V+ + G  G GK T  A +     
Sbjct: 3  KSKPNVVFVLGGPGSGKGTQCANIVRDFG 31

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG 43
          ++P  +L+ G  G GKTT       Y     
Sbjct: 7  TQPFTVLIEGNIGSGKTTYLNHFEKYKNDIC 37

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVY 54
          P +I ++G    GK++V AK+   L +     + K  ++++ D +
Sbjct: 2  PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 46

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 18/165 (10%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP--------------AAIDQL 62
           ++  A   G GKTT+  KL   L  +G    L+    +                A   Q 
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 63  VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122
           ++  +Q    +     E +                +D+++V+     +I K ++      
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFL--ASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG 121

Query: 123 KRVLNPTEVLLVVDAMTGQEAAALVTTFNIE--IGITGAILTKLD 165
            R         V+   +       V   +I    G+   ++  + 
Sbjct: 122 HRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQ 166

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 54
          I + G+ G GK T+  KL+   +  G+S   +A   Y
Sbjct: 3  IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRY 39

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 11  AKSRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVY 54
            +  P +I +AG   VGK+T +  L   L +  + +   L+  D +
Sbjct: 76  GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 57
             + G  G+GK+T +  L   L + GK  M+V  D    +
Sbjct: 4  QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADS 44

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 49
          R  +I+L G+   GK+T S KL   L   G    L+
Sbjct: 2  RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 37

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 9  VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ 68
           F+  + +VI + G  G GK T   KL            L AGD+ R          GE 
Sbjct: 2  AFSPDQVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGDLLRAEQGRAGSQYGEL 57

Query: 69 V 69
          +
Sbjct: 58 I 58

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 10 FAKSRPTVILLAGLQGVGKTTVSAKLANYL 39
               P V++  G  G GK+T   +     
Sbjct: 9  LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 38

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 10/98 (10%), Positives = 22/98 (22%)

Query: 25  GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ 84
            VGKT  S  L    K  G                 + +   + + +   ++      + 
Sbjct: 12  EVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATV 71

Query: 85  IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDV 122
                 E      +          L +   +    +  
Sbjct: 72  NPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQA 109

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 12 KSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYR 55
            R   I L GL   GK+T++ +L + L + +      + GD  R
Sbjct: 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 12/160 (7%)

Query: 17  VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV----- 71
           V  + G +  GKTT+  K      ++G     V    +         +   +        
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62

Query: 72  -----PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL 126
                         +P       L       +D+V+V+   + +  K ++   ++    L
Sbjct: 63  TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWASL 122

Query: 127 NPTEVLLVVDAMTGQEAAALVTTFNI--EIGITGAILTKL 164
                +  V A    E       F++  +      ++ ++
Sbjct: 123 QHLANIRAVIAWEPLEGPLAHPVFSLADDDEYIPWLMNEV 162

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 49
          I++ GL+G GKTT    +   L++ G   M+ 
Sbjct: 5  IVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 36

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 15 PTVILLAGLQGVGKTTVSAKLANYLKKQG 43
          P  + + G   VGK+T    L     +  
Sbjct: 2  PRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 52
             + +L G+ G GK+ V++++A+ L         +   
Sbjct: 5  DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 43

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 214

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 18 ILLAGLQGVGKTTVSAKLANYLKKQGK 44
          IL+ GL   GKTT    L   L+   K
Sbjct: 6  ILIEGLDRTGKTTQCNILYKKLQPNCK 32

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 58
             ++LL+G  G GK+T++  LA      G   +    D      
Sbjct: 3  GGNILLLSGHPGSGKSTIAEALA---NLPGVPKVHFHSDDLWGYI 44

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 63
          + ++ G  GVGK+T   +LA  L         + GD+     +    
Sbjct: 4  LYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIINHMVVGGYR 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1qzxa2	138	Signal sequence binding protein Ffh {Archaeon Sulf	100.0
d2qy9a2	211	GTPase domain of the signal recognition particle r	100.0
d1ls1a2	207	GTPase domain of the signal sequence recognition p	100.0
d1vmaa2	213	GTPase domain of the signal recognition particle r	100.0
d1j8yf2	211	GTPase domain of the signal sequence recognition p	100.0
d1hq1a_	104	Signal sequence binding protein Ffh {Escherichia c	100.0
d2ffha2	100	Signal sequence binding protein Ffh {Thermus aquat	100.0
d1okkd2	207	GTPase domain of the signal recognition particle r	100.0
d1qb2a_	107	SRP54M {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1dula_	69	Signal sequence binding protein Ffh {Escherichia c	99.94
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	99.74
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	99.72
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	99.71
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	99.68
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	99.61
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	99.57
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.46
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	99.46
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.35
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.32
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.31
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.9
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.72
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.7
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.61
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.59
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.52
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.5
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.44
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.36
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.36
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.34
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.32
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.31
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.15
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.13
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.12
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.05
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	98.05
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.02
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.01
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.96
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.96
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.93
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.92
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.9
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.9
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.87
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.85
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.82
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.82
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.8
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.79
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.79
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.76
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.74
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.74
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.67
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.66
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.6
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.59
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.55
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.55
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.53
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.52
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.46
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.44
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.43
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.37
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.35
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.3
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.29
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.29
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.28
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.24
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.19
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	97.19
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.18
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.18
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.16
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.14
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.12
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.11
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.11
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.08
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.07
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.04
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.02
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.02
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.01
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.01
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.96
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.95
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.93
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.92
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.89
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.89
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.89
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.88
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	96.86
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.81
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.8
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.79
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.76
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	96.74
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.71
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.71
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.69
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.69
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.56
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.52
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.52
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.51
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.51
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.46
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.44
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.43
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.42
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.41
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.35
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.34
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.34
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.32
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.3
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.3
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.28
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.27
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.26
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.23
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.23
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.23
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.22
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.22
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.2
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.18
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.18
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.18
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.17
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.14
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.11
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.1
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.09
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.08
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.08
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.07
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.03
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.03
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.02
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.01
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.01
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.92
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.89
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.8
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.76
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.71
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.7
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.7
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.69
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.66
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.6
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.57
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.54
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.44
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.44
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	95.39
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.36
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.36
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.36
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.32
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	95.29
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.27
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.25
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.14
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.13
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.12
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.08
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.03
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.75
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.75
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.73
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.71
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.71
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.67
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.65
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.62
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.62
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	94.57
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	94.55
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.4
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.38
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.37
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.26
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.11
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.08
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.06
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.01
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	94.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.0
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.86
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.67
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	93.55
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.51
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.46
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.45
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.41
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.35
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.23
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.02
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.98
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.95
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	92.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.78
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.43
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.39
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.89
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.88
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.86
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.82
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.8
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	91.71
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.6
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.42
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.3
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.24
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	91.14
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.05
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.0
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.6
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	89.59
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.56
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	89.43
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.41
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.36
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	88.92
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	88.56
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	88.29
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.28
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	88.16
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.14
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	87.99
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	87.87
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	87.76
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	87.66
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	87.59
d1tf5a3	273	Translocation ATPase SecA, nucleotide-binding doma	87.53
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	87.48
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	87.36
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.28
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	87.08
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	87.03
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	86.98
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	86.96
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	86.94
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.87
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	86.85
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	86.75
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.43
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.16
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.03
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	86.03
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.79
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.64
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	85.62
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.48
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	85.01
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	84.94
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.86
d1nkta3	288	Translocation ATPase SecA, nucleotide-binding doma	84.84
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.44
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	84.39
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	84.34
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	84.28
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	84.23
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.18
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.91
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	83.49
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	83.26
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	83.2
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	82.94
d1tuea_	205	Replication protein E1 helicase domain {Human papi	82.91
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	82.83
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	82.51
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	82.44
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.42
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	82.38
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.25
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	82.23
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	82.02
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	81.97
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	81.92
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.5
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	81.45
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.23
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	81.17
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	81.01
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	80.94
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	80.89
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.75
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	80.61
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	80.55
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	80.29
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.26
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	80.04
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	80.04

>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5e-40  Score=279.57  Aligned_cols=131  Identities=26%  Similarity=0.469  Sum_probs=116.4

Q ss_pred             ccHHHHHHHHHHHhhHhHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCc----hhhhHhHHHH
Q 015657          212 GDVLSFVEKAQEVMQQEDAEEMQKKIM--SANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP----AQVREAEKSL  285 (403)
Q Consensus       212 ~dv~~l~e~~~e~~~~~~~~~~~~~~~--~~~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~----~~~~~~~~~~  285 (403)
                      ||+.+|+|++++.+++++++++.+++.  +|+||++||++|++++.||||++++++||||++++..    .+.+.+++++
T Consensus         1 GDv~sLvEk~~~~~~~e~~~~~~~~~~~~~G~Ftl~Df~~Q~~~i~kmG~l~~im~miPG~~~~~~~~~~~~~~~~e~~l   80 (138)
T d1qzxa2           1 GDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKI   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-------CCCSTTHHHHHHHHHSCSSHHHHTTCCCSSCSCSCSTTSCSSCCSSTH
T ss_pred             CChHHHHHHHHHhhcHHHHHHHHHHHHhccCCccHHHHHHHHHHHHccCcHHHHHHHHHhhcccccchhhhcccccHHHH
Confidence            689999999999999999999999887  5899999999999999999999999999999986532    2344568899


Q ss_pred             HHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015657          286 KIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL  344 (403)
Q Consensus       286 ~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~  344 (403)
                      ++|++||+|||++||+||++|  ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus        81 k~~~~Ii~SMT~~Er~~P~il--~~SR~~RIA~GSG~~~~eV~~Llkqf~~m~kmmK~m  137 (138)
T d1qzxa2          81 RRWLAALNSMTYKELENPNII--DKSRMRRIAEGSGLEVEEVRELLEWYNNMNRLLKMV  137 (138)
T ss_dssp             HHHTHHHHSCBHHHHHCGGGC--CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccHHHHcCcccc--chHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999  579999999999999999999999999999999876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-37  Score=283.48  Aligned_cols=204  Identities=44%  Similarity=0.722  Sum_probs=193.8

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA   86 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~   86 (403)
                      +|+++.++|.||+++|++||||||++++||+++.++|++|.+|.+|.||+++++|++.+++..+++++......++..++
T Consensus         1 Pl~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l   80 (211)
T d2qy9a2           1 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI   80 (211)
T ss_dssp             CCCCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHH
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHH
Confidence            36777888999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC------CceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657           87 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI  160 (403)
Q Consensus        87 ~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI  160 (403)
                      ++..+.++.++||+|||||||+.+.+..++.++..+...+.      |.+++||+|++.+++....+..+...+++.|+|
T Consensus        81 ~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI  160 (211)
T d2qy9a2          81 FDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT  160 (211)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEEE
T ss_pred             HHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCceEE
Confidence            99999887789999999999999999999999999988764      789999999999999999999898899999999


Q ss_pred             EccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          161 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      +||+|++.+.|.++++...+++||.|++.|++++|+++|+|+++++++||
T Consensus       161 lTKlDe~~~~G~~l~~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~~~~llg  210 (211)
T d2qy9a2         161 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFA  210 (211)
T ss_dssp             EECCTTCTTTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred             EeecCCCCCccHHHHHHHHHCCCEEEEeCCCCcccCccCCHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999887

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.6e-36  Score=277.10  Aligned_cols=200  Identities=55%  Similarity=0.863  Sum_probs=185.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.++||+++|++||||||++++||++++++|++|.+|++|.||+++.+|+..+++..+++++......++......+...
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~   87 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK   87 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999988888888888887777


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhH
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGA  172 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~  172 (403)
                      .+..++|+|||||||+.+.+...+.++..+.....|+++++|+++++++++...++.|...+++.|+|+||+|.+.+.|.
T Consensus        88 ~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDe~~~~G~  167 (207)
T d1ls1a2          88 ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGA  167 (207)
T ss_dssp             HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGGCSSCHH
T ss_pred             HhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCCCeeEEeecCccccchH
Confidence            66689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCCc
Q 015657          173 ALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG  212 (403)
Q Consensus       173 ~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~~  212 (403)
                      ++++...++.||.|++.|+.++|+++|+|+++++++||||
T Consensus       168 ~l~~~~~~~~Pi~~i~~Gq~pedl~~~~~~~l~~~lLG~g  207 (207)
T d1ls1a2         168 ALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG  207 (207)
T ss_dssp             HHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999997

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.2e-36  Score=275.09  Aligned_cols=205  Identities=43%  Similarity=0.715  Sum_probs=192.9

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHH
Q 015657            6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI   85 (403)
Q Consensus         6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~   85 (403)
                      +.+++.+.+|.+|+++|++||||||++++||+++.++|++|.+|.+|.||+++.+|++.+++..+++++......++..+
T Consensus         2 ~~l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~   81 (213)
T d1vmaa2           2 TKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAV   81 (213)
T ss_dssp             CCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHH
T ss_pred             CcCcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcC------CceEEEEEecccHHHHHHHHHHhhhcCCeeEE
Q 015657           86 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGA  159 (403)
Q Consensus        86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~------~~~vllVvda~~g~~~~~~~~~~~~~~~i~Gv  159 (403)
                      +.......+.++||+|||||||+.+.+..++.++..+.....      |++++||+++..+++....+..+...+++.|+
T Consensus        82 ~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~l  161 (213)
T d1vmaa2          82 AFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGI  161 (213)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEE
T ss_pred             HHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccccCCceE
Confidence            887777666689999999999999999999999999988765      78999999999999999999888889999999


Q ss_pred             EEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcC
Q 015657          160 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG  210 (403)
Q Consensus       160 IlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG  210 (403)
                      |+||+|...+.|.++++...++.||.|++.|++++|++.|+|+.++++++|
T Consensus       162 I~TKlDe~~~~G~~l~~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~l~~~llg  212 (213)
T d1vmaa2         162 ILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS  212 (213)
T ss_dssp             EEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred             EEecccCCCcccHHHHHHHHHCCCEEEEeCCCCcccCccCCHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999887

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=100.00  E-value=7e-35  Score=266.55  Aligned_cols=206  Identities=43%  Similarity=0.697  Sum_probs=187.1

Q ss_pred             ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHH
Q 015657            6 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQI   85 (403)
Q Consensus         6 ~~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~   85 (403)
                      ..+.+..++|.||+++|++||||||++++||+++.++|++|.+|.+|.||.++.+|+..+++..+++++......++...
T Consensus         3 ~~~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~   82 (211)
T d1j8yf2           3 EPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGI   82 (211)
T ss_dssp             CCCCSCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHH
T ss_pred             CcccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHH
Confidence            45666678899999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCccccH--HhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEcc
Q 015657           86 AKQGLEEAKKKNVDVVIVDTAGRLQIDK--AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK  163 (403)
Q Consensus        86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~--~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk  163 (403)
                      +.+++..++..++|+|||||||+.+.+.  ..+.++..+...+.|+++++|+++..+++....+..+....++.++|+||
T Consensus        83 ~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TK  162 (211)
T d1j8yf2          83 AKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITK  162 (211)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEEC
T ss_pred             HHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCcceEEEec
Confidence            9988888777899999999999977653  45688899999999999999999999988888888888889999999999


Q ss_pred             CCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhcCC
Q 015657          164 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM  211 (403)
Q Consensus       164 ~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~lG~  211 (403)
                      +|...+.|.++++...+++||.|++.|++++||++|+|++++++++|.
T Consensus       163 lDet~~~G~~l~~~~~~~lPi~~it~Gq~v~DL~~~~~~~l~~~ll~~  210 (211)
T d1j8yf2         163 MDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH  210 (211)
T ss_dssp             TTSCSCHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred             ccCCCcccHHHHHHHHHCcCEEEEeCCCCcccCccCCHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999984

>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-37  Score=248.96  Aligned_cols=102  Identities=41%  Similarity=0.688  Sum_probs=71.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCch-hhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhh
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD  319 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~-~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~g  319 (403)
                      .||++||++|++++.||||++++++||||++++... ..+.+++++++|++||+|||++||+||+++  ++||++|||+|
T Consensus         1 ~Ftl~Df~~Q~~~i~kMG~l~~im~miPG~~~~~~~~~~~~~e~~lk~~~aIi~SMT~~Er~~p~~l--~~SR~~RIA~G   78 (104)
T d1hq1a_           1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAG   78 (104)
T ss_dssp             CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHhcCHHHhhccccc--cccHHHHHHcc
Confidence            389999999999999999999999999999876532 445668889999999999999999999999  57999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHH
Q 015657          320 SGKTEQQVSQLVAQLFQMRVRMKNL  344 (403)
Q Consensus       320 sg~~~~~v~~l~~~~~~~~~~~~~~  344 (403)
                      ||++++|||+||+||++|++|||+|
T Consensus        79 SG~~~~eV~~Llkqf~~m~kmmk~m  103 (104)
T d1hq1a_          79 SGMQVQDVNRLLKQFDDMQRMMKKM  103 (104)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999986

>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.5e-36  Score=243.13  Aligned_cols=100  Identities=37%  Similarity=0.683  Sum_probs=93.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCCCchhhhHhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhc
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDS  320 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gs  320 (403)
                      +||++||++|++++.||||++++++||||+++..    ..+++++++|++||+|||++||+||++|  ++||++|||+||
T Consensus         1 eFtl~Df~~Ql~~i~kmG~l~~i~~miPG~~~~~----~~~e~~lkr~~~Ii~SMT~~Er~~p~ll--~~sR~~RIA~GS   74 (100)
T d2ffha2           1 ELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGL----KVDEKAIKRLEAIVLSMTPEERKDPRIL--NGSRRKRIAKGS   74 (100)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCSCCT----TSCHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhcCHHHHHhhCcccchhh----hhhHHHHHHHHHHHHHcCHhhccCchhc--cHHHHHHHHccC
Confidence            6999999999999999999999999999998632    3568899999999999999999999999  579999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015657          321 GKTEQQVSQLVAQLFQMRVRMKNLMG  346 (403)
Q Consensus       321 g~~~~~v~~l~~~~~~~~~~~~~~~~  346 (403)
                      |++++|||+||+||++|++|||+|.|
T Consensus        75 G~~~~eV~~Llkqf~~m~~mmk~m~K  100 (100)
T d2ffha2          75 GTSVQEVNRFIKAFEEMKALMKSLEK  100 (100)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=5.4e-35  Score=266.66  Aligned_cols=197  Identities=40%  Similarity=0.695  Sum_probs=185.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+|++|+++|++||||||++++||+++.++|++|.+|.+|.||+++++|++.+++..+++++......++...+.+....
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   83 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA   83 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999988888999999888877


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhc------CCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~------~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .+..++|+|||||||+.+.+..++.++..+....      .|++++||+|++.+++....+..|...+++.|+|+||+|+
T Consensus        84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDe  163 (207)
T d1okkd2          84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG  163 (207)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCCceEEEeccCC
Confidence            7667999999999999999999999998887764      5799999999999999999888888889999999999999


Q ss_pred             CCchhHHHHHHHHhCCCeEEeeccCCcCCCCCCCchhhhhhhc
Q 015657          167 DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL  209 (403)
Q Consensus       167 ~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~f~~~~~~~r~l  209 (403)
                      ..+.|.++++...+++||.|++.|++++|+++|+|+.++++++
T Consensus       164 t~~~G~~l~~~~~~~~Pi~~i~~Gq~p~Dl~~~~~~~l~~~ll  206 (207)
T d1okkd2         164 TAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALL  206 (207)
T ss_dssp             SCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHCCCEEEEeCCCChHhCccCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999876

>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: SRP54M
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=240.01  Aligned_cols=102  Identities=27%  Similarity=0.515  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHhcCCCCCCC--CchhhhHhHHHHHHHHHHHhCCCHHhhcCcccc---ccCccHHHH
Q 015657          241 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI--TPAQVREAEKSLKIMEAMIEAMTPEEREKPELL---AESPVRRKR  315 (403)
Q Consensus       241 ~~~~edl~~ql~~~~k~g~~~~~~~~~pg~~~~--~~~~~~~~~~~~~~~~~~i~smt~~e~~~p~~~---~~~~~r~~r  315 (403)
                      +||++||++|++++.||||++++|+||||+++.  +....+.+++++++|++||+|||++||+||+++   ..++||++|
T Consensus         1 qFtl~Df~~Q~~~i~KMG~l~~ll~miPG~~~~~~~~~~~~~~~~~lk~~~~ii~SMT~~Er~~p~~~~~~~~~~sR~~R   80 (107)
T d1qb2a_           1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR   80 (107)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHhhccHhhcCCCchhhhhccChHHHHH
Confidence            699999999999999999999999999999853  333445567899999999999999999999843   346899999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 015657          316 VAQDSGKTEQQVSQLVAQLFQMRVRMK  342 (403)
Q Consensus       316 ia~gsg~~~~~v~~l~~~~~~~~~~~~  342 (403)
                      ||+|||++++|||+||+||++|++|||
T Consensus        81 IA~GSG~~~~eVn~Llkqf~~m~kmmK  107 (107)
T d1qb2a_          81 VARGSGVSTRDVQELLTQYTKFAQMVK  107 (107)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999988876

>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Signal peptide-binding domain
superfamily: Signal peptide-binding domain
family: Signal peptide-binding domain
domain: Signal sequence binding protein Ffh
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.7e-27  Score=175.72  Aligned_cols=63  Identities=40%  Similarity=0.561  Sum_probs=60.0

Q ss_pred             HhHHHHHHHHHHHhCCCHHhhcCccccccCccHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015657          280 EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL  344 (403)
Q Consensus       280 ~~~~~~~~~~~~i~smt~~e~~~p~~~~~~~~r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~  344 (403)
                      .+|+.+++++|||+|||++||+||++|  ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus         7 ~dek~l~r~eaiI~SMT~~ER~~P~ll--~~SR~~RIA~GSG~~~~eVn~Llkqf~~m~kmmk~m   69 (69)
T d1dula_           7 LEQKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM   69 (69)
T ss_dssp             HHCCHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcCCHHHHhChHhh--chhHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            468899999999999999999999999  579999999999999999999999999999999985

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.74  E-value=1.5e-17  Score=157.46  Aligned_cols=203  Identities=16%  Similarity=0.146  Sum_probs=114.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-----------HHHHH-hh-------------hcc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI-LG-------------EQV   69 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-----------~~l~~-~~-------------~~~   69 (403)
                      +++|+++|+||+||||+|.+||.+|+++|+||++||+|+|.+...           ..... ..             ...
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~st~~~l~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~~~   81 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYG   81 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCcchhhcCCCCCCchhhhhhccCcccccccceeEecccc
Confidence            477888999999999999999999999999999999999865431           11100 00             011


Q ss_pred             CCceEeCCCCCC---HH---HH----HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc-
Q 015657           70 GVPVYTAGTEVK---PS---QI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-  138 (403)
Q Consensus        70 gv~v~~~~~~~~---~~---~~----~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~-  138 (403)
                      ++..++......   ..   ..    +...+..+ ...|||||||||+.+......     .+.....++.+++++.+. 
T Consensus        82 ~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~D~iiiD~pp~~~~~~~~-----~~~~~~~a~~vlv~~~~~~  155 (289)
T d2afhe1          82 GVKCVESGGPEPGVGCAGRGVITAINFLEEEGAY-EDDLDFVFYDVLGDVVCGGFA-----MPIRENKAQEIYIVCSGEM  155 (289)
T ss_dssp             GCEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCS-STTCSEEEEEEECSSCCTTTT-----HHHHTTCCCEEEEEECSSH
T ss_pred             cceeeccCCchhhhhhhhcchHHHHHHHHHHHHh-hccCCeEeeccCCccCHHHHH-----HHHHhhccceeecccchhH
Confidence            223333322111   11   11    11111111 368999999999987432111     111111236667776652 


Q ss_pred             -cHHHH---HHHHHHh--hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCcCCCCC--CCchhhhhhhcC
Q 015657          139 -TGQEA---AALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEP--FYPDRMAGRILG  210 (403)
Q Consensus       139 -~g~~~---~~~~~~~--~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v~~l~~--f~~~~~~~r~lG  210 (403)
                       ....+   ...+..+  ...+.+.|+|+|+.+..........+.+.+|.++  +++.+....+..  .....+.+...+
T Consensus       156 ~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~g~~v--l~~IP~~~~v~eA~~~g~pv~~~~p~  233 (289)
T d2afhe1         156 MAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQM--IHFVPRDNVVQRAEIRRMTVIEYDPK  233 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCE--EEEECCCHHHHHHHHTTSCHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHHHHHHHHcCCeE--EEEEeccHHHHHHHHcCCceEEECcC
Confidence             11222   2222222  2356678999999987766666778888899988  555543322111  112234444445


Q ss_pred             CccHHHHHHHHHHHh
Q 015657          211 MGDVLSFVEKAQEVM  225 (403)
Q Consensus       211 ~~dv~~l~e~~~e~~  225 (403)
                      .....+|.+.+.+.+
T Consensus       234 S~~a~~y~~LA~ei~  248 (289)
T d2afhe1         234 AKQADEYRALARKVV  248 (289)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            544444444444443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.72  E-value=2.4e-17  Score=154.20  Aligned_cols=171  Identities=17%  Similarity=0.138  Sum_probs=104.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHhhh-----------ccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVILGE-----------QVGV   71 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~~~-----------~~gv   71 (403)
                      .|+|+|+|+||+||||+|.+||.+|+++|++|++||+|++.+.....            +.....           ..++
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGI   80 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGC
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCchhhhhCCCcccchhhhhhhcccccccceEEEecCCce
Confidence            47899999999999999999999999999999999999986543111            100000           0112


Q ss_pred             ceEeCCCCCC----HH-H-----HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--c
Q 015657           72 PVYTAGTEVK----PS-Q-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--T  139 (403)
Q Consensus        72 ~v~~~~~~~~----~~-~-----~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~  139 (403)
                      .+.+......    .. .     .+.+.+..+ .+.||+||||||+........     .......++.+++|+.+.  .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~D~viiD~p~~~~~~~~~-----~~~~~~~ad~vliv~~~~~~s  154 (269)
T d1cp2a_          81 RCVESGGPEPGVGCAGRGIITSINMLEQLGAY-TDDLDYVFYDVLGDVVCGGFA-----MPIREGKAQEIYIVASGEMMA  154 (269)
T ss_dssp             EEEECCCCCTTSSCHHHHHHHHHHHHHHTTCC-CTTCSEEEEEEECSSCSTTTT-----HHHHTTSCCEEEEEECSSHHH
T ss_pred             EEeccCcchhhhhhcccchHHHHHHHHHHHHh-hccCCEEEeccCCccchhHHH-----HHHHhhccCceeeccchhhhH
Confidence            2333322111    10 0     111222222 367999999999876432111     111112347778888762  2


Q ss_pred             HH---HHHHHHHHhh--hcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccCCc
Q 015657          140 GQ---EAAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM  193 (403)
Q Consensus       140 g~---~~~~~~~~~~--~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge~v  193 (403)
                      ..   .....+..+.  ....+.++|+|+.+..........+.+.++.|+  ++..|..
T Consensus       155 l~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~--~~~IP~d  211 (269)
T d1cp2a_         155 LYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQL--IHFVPRS  211 (269)
T ss_dssp             HHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCE--EEEECCC
T ss_pred             HHHHHHHHHHHHhhccccceeccceEEeeecCCCccchhhhhHhhcCCeE--EEEEecC
Confidence            22   3333344443  344568899999987776667777888899988  5555443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.71  E-value=6.2e-17  Score=147.25  Aligned_cols=166  Identities=19%  Similarity=0.230  Sum_probs=107.0

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH------------HHHh---------hhccCCc
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL---------GEQVGVP   72 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~------------l~~~---------~~~~gv~   72 (403)
                      .|+|+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.....            +...         ....++.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVK   80 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHhCCCcCcchhhhhhccccccccccccCCccce
Confidence            3678887 7799999999999999999999999999999987654211            1000         0012344


Q ss_pred             eEeCCCCCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEeccc--HHHHHH
Q 015657           73 VYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAAA  145 (403)
Q Consensus        73 v~~~~~~~~~~-----~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~--g~~~~~  145 (403)
                      +++.+......     +.++..++.+. ..||+||||||+.+....  ...      ....+.+++|+.+..  ...+.+
T Consensus        81 ~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~~~~~~~~~--~~~------l~~ad~v~~v~~~~~~~~~~~~~  151 (232)
T d1hyqa_          81 VVPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERSA--VIA------IAAAQELLLVVNPEISSITDGLK  151 (232)
T ss_dssp             EEECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHHH--HHH------HHHSSEEEEEECSSHHHHHHHHH
T ss_pred             eEeeecccccccccchhhHHHHHHHHh-hccceeeecccccccchh--HHH------hhhhheeeeeccccccchhhhhh
Confidence            55443322111     23466677764 689999999999875321  111      112488888888732  233333


Q ss_pred             HHHHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657          146 LVTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE  191 (403)
Q Consensus       146 ~~~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge  191 (403)
                      ....+ ....++.++|+|+++..........+.+.++.|+  ++..|
T Consensus       152 ~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~i~~~~~~~~--~~~IP  196 (232)
T d1hyqa_         152 TKIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV--IGLIP  196 (232)
T ss_dssp             HHHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE--EEEEE
T ss_pred             hhhhhhhcccccccccccccccccccchhhhHHhhcCCeE--EEECC
Confidence            33322 2345678999999986555445566778889988  55544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.68  E-value=1.4e-16  Score=145.03  Aligned_cols=164  Identities=23%  Similarity=0.316  Sum_probs=102.5

Q ss_pred             CEEEEEE-cCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHH----------Hhhhc------------cCC
Q 015657           15 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV----------ILGEQ------------VGV   71 (403)
Q Consensus        15 ~~iI~v~-G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~----------~~~~~------------~gv   71 (403)
                      .+||+|+ ++||+||||+|.+||.+|+++|++|++||+|++.+.....+.          .+...            .+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   81 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNV   81 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChhHHhCCCCcccchhhhccCCCcHHHhhhccccccc
Confidence            3788888 559999999999999999999999999999987665422110          00000            011


Q ss_pred             ceEeCCCCCCHHH-------HHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecc--cHHH
Q 015657           72 PVYTAGTEVKPSQ-------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQE  142 (403)
Q Consensus        72 ~v~~~~~~~~~~~-------~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~--~g~~  142 (403)
                      ...+.  ......       .+.+.+..+ .+.||+||||||+.+...  ...      .....|.+++|+.+.  ....
T Consensus        82 ~~~~~--~~~~~~~~~~~~~~~~~~~~~l-~~~~d~IiiD~~~~~~~~--~~~------~l~~aD~viiv~~~~~~s~~~  150 (237)
T d1g3qa_          82 YVLPG--AVDWEHVLKADPRKLPEVIKSL-KDKFDFILIDCPAGLQLD--AMS------AMLSGEEALLVTNPEISCLTD  150 (237)
T ss_dssp             EEECC--CCSHHHHHHCCGGGHHHHHHTT-GGGCSEEEEECCSSSSHH--HHH------HHTTCSEEEEEECSCHHHHHH
T ss_pred             ccccc--ccchhhhhhhhhHHHHHHHHHH-HhcCCEEEEccccccccc--chh------hhhhhhcccccccccceecch
Confidence            11111  111111       234555555 378999999999987531  111      122358888988873  2244


Q ss_pred             HHHHHHHh-hhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeEEeeccC
Q 015657          143 AAALVTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE  191 (403)
Q Consensus       143 ~~~~~~~~-~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~fig~ge  191 (403)
                      +.+.+..+ ...+++.|+|+||++...+.-......+..+.|+  .+..|
T Consensus       151 ~~~~~~~~~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~--~~~IP  198 (237)
T d1g3qa_         151 TMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL--LAVIP  198 (237)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE--EEEEE
T ss_pred             hhHHHHHHhhhhhhhhhhhhcccccccchhhhHHHHhhcCceE--EEEeC
Confidence            44444433 3456778999999987655434444555678777  55544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=5.4e-15  Score=132.49  Aligned_cols=176  Identities=18%  Similarity=0.180  Sum_probs=107.7

Q ss_pred             EEEEEEcCC-CCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-------HHHHHHhhhccCC--------ceEeCCCC
Q 015657           16 TVILLAGLQ-GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGEQVGV--------PVYTAGTE   79 (403)
Q Consensus        16 ~iI~v~G~g-GsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-------~~~l~~~~~~~gv--------~v~~~~~~   79 (403)
                      +.++|+|++ ||||||+|++||.+|+++|+||+++|.|+++...       .+.. ......+.        +.......
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDAL-ALQRNSSLQLDYATVNPYTFAEPT   80 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHH-HHHHTCSSCCCHHHHCSEEESSCS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccccCCCCCCCCcchhHHH-HHHHhhccCcccccccccccccch
Confidence            568999995 9999999999999999999999999999765221       0110 01111111        11111110


Q ss_pred             -----------CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHH
Q 015657           80 -----------VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL  146 (403)
Q Consensus        80 -----------~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~  146 (403)
                                 ......+.+.+... ...+|++++|+++.+............+..... ..+++|++....  ..+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~V~~~~~~~~~~~~~~  158 (224)
T d1byia_          81 SPHIISAQEGRPIESLVMSAGLRAL-EQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQ-LPVILVVGVKLGCINHAMLT  158 (224)
T ss_dssp             CHHHHHHHHTCCCCHHHHHHHHHHH-HTTCSEEEEECSSSTTCEEETTEEHHHHHHHHT-CCEEEEEECSTTHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHhhh-hhccceEeecccccccccccccchhhccccccc-ceeeEEEeeccchhHHHHHH
Confidence                       11122234445554 368999999999887642221111223333333 677888877333  233332


Q ss_pred             HHHh-hhcCCeeEEEEccCCCC--CchhHHHHHHHHhCCCeEEeeccCCcCCC
Q 015657          147 VTTF-NIEIGITGAILTKLDGD--SRGGAALSVKEVSGKPIKLVGRGERMEDL  196 (403)
Q Consensus       147 ~~~~-~~~~~i~GvIlNk~D~~--~~~~~~~~~~~~~g~pi~fig~ge~v~~l  196 (403)
                      ...+ .....+.|+|+|+++..  .+...+..+.+.+|.|+  +|..|..++.
T Consensus       159 ~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~gi~v--lG~IP~~~~~  209 (224)
T d1byia_         159 AQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPL--LGEIPWLAEN  209 (224)
T ss_dssp             HHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCE--EEEECCCTTC
T ss_pred             HHHHhccCCccEEEEEeCcCCCchHHHHHHHHHHHHhCCCE--EEECCCCCCC
Confidence            2322 45677899999999854  34455677888899998  7877766553

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.8e-15  Score=140.00  Aligned_cols=47  Identities=36%  Similarity=0.535  Sum_probs=43.6

Q ss_pred             cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657            9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus         9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .|.+..|++|+++||||+||||+|++||.+|+++|+||++||+|++.
T Consensus         2 ~~~~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~   48 (296)
T d1ihua1           2 QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPAS   48 (296)
T ss_dssp             GGGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CcCCCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            45677899999999999999999999999999999999999999864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=2.3e-13  Score=127.77  Aligned_cols=218  Identities=17%  Similarity=0.188  Sum_probs=130.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+.|.|+++|+.|+||||++.+|.+....-.+.--+-+..    ...|. .......++.+...             +..
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~----~~~D~-~~~E~~r~~si~~~-------------~~~   65 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGA----ATMDF-MEQERERGITITAA-------------VTT   65 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC------------------------CCCCCCCS-------------EEE
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCc----eEEec-cHHHHhcCCccccc-------------eee
Confidence            3567899999999999999999986655322211111110    00000 01112223322211             011


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhcCCe-eEEEEccCCCC--C
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD--S  168 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~~~i-~GvIlNk~D~~--~  168 (403)
                      +.++++.+.||||||...+-.+....+..      .|.+++|+|+..| +.....++......++ .-+++||+|..  .
T Consensus        66 ~~~~~~~~n~iDtPG~~dF~~e~~~~l~~------~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2          66 CFWKDHRINIIDAPGHVDFTIEVERSMRV------LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             EEETTEEEEEECCCSSSSCSTTHHHHHHH------CCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCC
T ss_pred             eccCCeEEEEecCCchhhhHHHHHHHHHh------hhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccc
Confidence            23578999999999998875555544432      3889999999766 3334445554443443 44888999965  3


Q ss_pred             chhHHHHHHHHhCCCeE----EeeccCCcCCCC--------CCC------------chhhhhhhcCCccHHHHHHHHHHH
Q 015657          169 RGGAALSVKEVSGKPIK----LVGRGERMEDLE--------PFY------------PDRMAGRILGMGDVLSFVEKAQEV  224 (403)
Q Consensus       169 ~~~~~~~~~~~~g~pi~----fig~ge~v~~l~--------~f~------------~~~~~~r~lG~~dv~~l~e~~~e~  224 (403)
                      ....+.++.+.++.++.    ++|.+..+..+.        .|.            |+.+.      ..+..+.+.+.+.
T Consensus       140 ~~~~l~ei~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~------~~~~~~~~~l~e~  213 (276)
T d2bv3a2         140 LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYL------DQAREYHEKLVEV  213 (276)
T ss_dssp             HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGH------HHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhCCCeEEEEecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHH------HHHHHHHHHHhhh
Confidence            44666778888887654    445544432211        010            11111      1244666667777


Q ss_pred             hhHhHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 015657          225 MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSM  260 (403)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~edl~~ql~~~~k~g~~  260 (403)
                      +.+.+++.+.+++..++++.+++...++.....|.+
T Consensus       214 vae~Dd~L~e~yle~~e~~~eel~~~l~~a~~~g~i  249 (276)
T d2bv3a2         214 AADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKI  249 (276)
T ss_dssp             HHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSC
T ss_pred             hhcccHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcE
Confidence            777777778888888899999999999998887753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=7.3e-14  Score=130.46  Aligned_cols=46  Identities=35%  Similarity=0.435  Sum_probs=41.7

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      +.+..+||+++|+||+||||+|++||.+|+++|++|++||+|++..
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~~   61 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH   61 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC--
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            4667899999999999999999999999999999999999998753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.35  E-value=1e-11  Score=118.98  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=98.2

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH-------HHHHHhhhccCCceEeCCCCCCH-
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------DQLVILGEQVGVPVYTAGTEVKP-   82 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~-------~~l~~~~~~~gv~v~~~~~~~~~-   82 (403)
                      ..++..+|.|+|+||+||||+..+|+.++...|++|.++..||..|-.-       ..+..+....++.+.+....... 
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g  126 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG  126 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence            3456789999999999999999999999999999999999998776431       11112222223333333322222 


Q ss_pred             --HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEE
Q 015657           83 --SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI  160 (403)
Q Consensus        83 --~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvI  160 (403)
                        .....+.+..++..+||+|||+|.|.........       .  ..|.+++|+.+..|.+....-...-+-..  -+|
T Consensus       127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~-------~--~~D~~v~v~~p~~GD~iQ~~k~gilE~aD--i~v  195 (323)
T d2qm8a1         127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA-------D--LTDFFLVLMLPGAGDELQGIKKGIFELAD--MIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH-------T--TSSEEEEEECSCC------CCTTHHHHCS--EEE
T ss_pred             chhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhh-------c--ccceEEEEeeccchhhhhhhhhhHhhhhh--eee
Confidence              2334566666666799999999999876422211       1  14788888888877665544333333333  389


Q ss_pred             EccCCCCCchhHHHHH
Q 015657          161 LTKLDGDSRGGAALSV  176 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~  176 (403)
                      +||.|..........+
T Consensus       196 vNKaD~~~~~~~~~~~  211 (323)
T d2qm8a1         196 VNKADDGDGERRASAA  211 (323)
T ss_dssp             EECCSTTCCHHHHHHH
T ss_pred             EeccccccchHHHHHH
Confidence            9999976555554443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.2e-11  Score=118.83  Aligned_cols=149  Identities=19%  Similarity=0.155  Sum_probs=91.6

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH-----HH--HhhhccCCceEeCCCC---CC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-----LV--ILGEQVGVPVYTAGTE---VK   81 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~-----l~--~~~~~~gv~v~~~~~~---~~   81 (403)
                      .++..+|.|+|+|||||||+...|+.++..+|++|.++..||..|..--.     ..  .+....++.+......   ..
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg  130 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  130 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence            45688999999999999999999999999999999999999988764211     11  1122222333332221   12


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEE
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL  161 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIl  161 (403)
                      ......+++..+...+||++||+|.|....+..       +.  ..+|.+++|+.+..|.+.........+-..  .+|+
T Consensus       131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~-------i~--~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aD--i~Vv  199 (327)
T d2p67a1         131 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE-------VA--RMVDCFISLQIAGGGDDLQGIKKGLMEVAD--LIVI  199 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH-------HH--TTCSEEEEEECC------CCCCHHHHHHCS--EEEE
T ss_pred             chhhhhHHHHHHHhcCCCeEEEeeccccccchh-------hh--hccceEEEEecCCCchhhhhhchhhhcccc--EEEE
Confidence            334556777777778999999999998753221       11  124788888888776555433333333233  3899


Q ss_pred             ccCCCCCchh
Q 015657          162 TKLDGDSRGG  171 (403)
Q Consensus       162 Nk~D~~~~~~  171 (403)
                      ||.|......
T Consensus       200 NKaD~~~~~~  209 (327)
T d2p67a1         200 NKDDGDNHTN  209 (327)
T ss_dssp             CCCCTTCHHH
T ss_pred             EeecccchHH
Confidence            9999875443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.31  E-value=2e-11  Score=113.86  Aligned_cols=221  Identities=17%  Similarity=0.128  Sum_probs=120.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      |.|+++|+.|+||||++.+|.+......++-. ++-.....+...+-...+......+.+.                 .+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~-v~~g~~~~D~~~~E~~r~~ti~~~~~~~-----------------~~   64 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGR-VEEGTTTTDYTPEAKLHRTTVRTGVAPL-----------------LF   64 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCC-GGGTCCSSCCSHHHHHTTSCCSCEEEEE-----------------EE
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhcc-chhccccccchHHHHHhCCeEEeecccc-----------------cc
Confidence            67899999999999999999755432211100 1100000011111111111111112111                 24


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH-HHHHHHHHHhhhc-CCeeEEEEccCCCCCc-hhH
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIE-IGITGAILTKLDGDSR-GGA  172 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g-~~~~~~~~~~~~~-~~i~GvIlNk~D~~~~-~~~  172 (403)
                      +++.+.||||||...+-.+....+..      .|.+++|+|+..| +.....++.+... -....+++||+|.... ...
T Consensus        65 ~~~~~n~iDtPGh~dF~~e~~~al~~------~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~~~~~~~  138 (267)
T d2dy1a2          65 RGHRVFLLDAPGYGDFVGEIRGALEA------ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYAL  138 (267)
T ss_dssp             TTEEEEEEECCCSGGGHHHHHHHHHH------CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCCHHHH
T ss_pred             cccceeEEccCchhhhhhhhhhhhcc------cCceEEEeeccCCccchhHHHHHhhhhcccccccccccccccccchhh
Confidence            68899999999998764444443322      3899999999655 2222222323222 2234588999996533 344


Q ss_pred             HHHHHHHhCCCeE---EeeccCCcCCCC--------CCCch--hhhhhhcCC-ccHHHHHHHHHHHhhHhHHHHHHHHHh
Q 015657          173 ALSVKEVSGKPIK---LVGRGERMEDLE--------PFYPD--RMAGRILGM-GDVLSFVEKAQEVMQQEDAEEMQKKIM  238 (403)
Q Consensus       173 ~~~~~~~~g~pi~---fig~ge~v~~l~--------~f~~~--~~~~r~lG~-~dv~~l~e~~~e~~~~~~~~~~~~~~~  238 (403)
                      +..+++.++..+.   +++.+..+..+.        .|...  ...+....+ ..+..+.+.+.|.+.+.+++.+.+++.
T Consensus       139 l~~~~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle  218 (267)
T d2dy1a2         139 LEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLE  218 (267)
T ss_dssp             HHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHhccCcCeEeeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC
Confidence            5677788883222   333333321110        00000  000000011 123455566666666667777778888


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCh
Q 015657          239 SANFDFNDFLKQTRTVARMGSM  260 (403)
Q Consensus       239 ~~~~~~edl~~ql~~~~k~g~~  260 (403)
                      .++++.+++.+.++.....|.+
T Consensus       219 ~~~l~~eel~~~l~~ai~~g~i  240 (267)
T d2dy1a2         219 GEEVTGEALEKAFHEAVRRGLL  240 (267)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTSC
T ss_pred             CCcccHHHHHHHHHHHHHcCcE
Confidence            8899999999999998888854

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.90  E-value=4.2e-09  Score=93.92  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      --|+++|+.++||||++.+|.+.+.....+.-+-+..     ..+.. ......|+.+-....             .+.+
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~-----~~d~~-~eE~~rgiTi~~~~~-------------~~~~   64 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYG-----DIDKA-PEERARGITINTAHV-------------EYET   64 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHH-----HHSCS-HHHHHHTCCCSCEEE-------------EEEC
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhh-----hcccc-hHHhcCCeEEEeeEE-------------EEEe
Confidence            3488999999999999999998877543222111111     01100 001111222111000             0124


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH-HHHHHHHHhhhcCCe--eEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI--TGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~-~~~~~~~~~~~~~~i--~GvIlNk~D~~~  168 (403)
                      +++.+.||||||...+-..+...      +..+|.++||+|+..|. ........+....++  .-|++||+|...
T Consensus        65 ~~~~i~iiDtPGh~df~~~~~~~------~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          65 AKRHYSHVDCPGHADYIKNMITG------AAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             SSCEEEEEECCCSGGGHHHHHHH------HTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred             CCeEEEEEeCCCchhhHHHHHHH------HHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCC
Confidence            78899999999976543333222      23358999999996551 111222223223333  335689999643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=4.5e-09  Score=92.46  Aligned_cols=93  Identities=20%  Similarity=0.259  Sum_probs=60.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCC---C----HHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV---K----PSQIAK   87 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~---~----~~~~~~   87 (403)
                      |++|+++|+|||||||+|.+|+.++...|+++.+++.|.+|......      .............   .    ....+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKT------YKSFEFFLPDNEEGLKIRKQCALAALN   75 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCS------CCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccc------cccccccccccccchhhHHHHHHHHHH
Confidence            78999999999999999999999999999999999999655333111      0000000000000   0    111233


Q ss_pred             HHHHHHHhCCCcEEEEeCCCCccccH
Q 015657           88 QGLEEAKKKNVDVVIVDTAGRLQIDK  113 (403)
Q Consensus        88 ~~l~~~~~~~~D~VIIDtpg~l~~d~  113 (403)
                      ..+..+.....+++|+|+......+.
T Consensus        76 ~~~~~~~~~~~~~vi~d~~~~~~~~r  101 (213)
T d1bifa1          76 DVRKFLSEEGGHVAVFDATNTTRERR  101 (213)
T ss_dssp             HHHHHHHTTCCSEEEEESCCCSHHHH
T ss_pred             HHHHHHHhcCCCEEEeecCCccHHHH
Confidence            44445555678999999988765443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.70  E-value=4.6e-10  Score=96.49  Aligned_cols=37  Identities=32%  Similarity=0.507  Sum_probs=33.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++|+|+|++||||||++..|+..|...|.++.++..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~   38 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   38 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Confidence            6899999999999999999999999999999877654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=8.3e-08  Score=86.38  Aligned_cols=166  Identities=17%  Similarity=0.197  Sum_probs=92.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc-------eEeCCCCCCHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQIA   86 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-------v~~~~~~~~~~~~~   86 (403)
                      +..|++|+|.-||||||+..+|...  ..|+|+.+|-.|.-... ++..  .....+..       +............+
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~g~~~-iD~~--~~~~~~~~~~el~~gcicc~~~~~~~~~l   76 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVS-VDDQ--LIGDRATQIKTLTNGCICCSRSNELEDAL   76 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCCSCC-EEEE--EECTTSCEEEEETTSCEEECTTSCHHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEecccchh-hhhh--hhcccccceEEecCCcceeccchhHHHHH
Confidence            3467899999999999998877653  45899999988732211 1100  00011111       11222222334444


Q ss_pred             HHHHHHHH--hCCCcEEEEeCCCCccccHHhHHHHH---HHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCe-eEEE
Q 015657           87 KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELK---DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAI  160 (403)
Q Consensus        87 ~~~l~~~~--~~~~D~VIIDtpg~l~~d~~l~~el~---~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i-~GvI  160 (403)
                      ...+..+.  ...+|+|||+|.|.... ..++..+.   ........+.++.|||+............+..++.. .-||
T Consensus        77 ~~~~~~~~~~~~~~d~iiIE~sG~~~p-~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~iv  155 (222)
T d1nija1          77 LDLLDNLDKGNIQFDRLVIECTGMADP-GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  155 (222)
T ss_dssp             HHHHHHHHHTSCCCSEEEEEEETTCCH-HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred             HHHHHHHhhccCCcceeEEeecccchh-hHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCCccc
Confidence            44444443  23689999999997543 22222211   112223347789999997765544333333333322 3389


Q ss_pred             EccCCCCCchhHHHHHHHHhCC--CeE
Q 015657          161 LTKLDGDSRGGAALSVKEVSGK--PIK  185 (403)
Q Consensus       161 lNk~D~~~~~~~~~~~~~~~g~--pi~  185 (403)
                      +||+|.......+....+..+.  ||.
T Consensus       156 lNK~Dl~~~~~~~~~~l~~lNP~a~Ii  182 (222)
T d1nija1         156 LTKTDVAGEAEKLHERLARINARAPVY  182 (222)
T ss_dssp             EECTTTCSCTHHHHHHHHHHCSSSCEE
T ss_pred             ccccccccHHHHHHHHHHHHhCCCeEE
Confidence            9999976555555555555543  553

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.59  E-value=3.7e-08  Score=88.39  Aligned_cols=149  Identities=19%  Similarity=0.193  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh-----HH--H---HHHhhhccCCc----eEeCCCCCCH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----ID--Q---LVILGEQVGVP----VYTAGTEVKP   82 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~-----~~--~---l~~~~~~~gv~----v~~~~~~~~~   82 (403)
                      ||+|+|+.||||||+..+|..++. .++++.+|..|+.....     ++  .   ..........+    +.........
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK   80 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHhh
Confidence            789999999999999999998775 57889999988643110     00  0   00000000000    0000000000


Q ss_pred             HHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHH--HH-HhhhcCCe
Q 015657           83 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAAL--VT-TFNIEIGI  156 (403)
Q Consensus        83 ~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~--~~-~~~~~~~i  156 (403)
                      .......+... ...++++++|+||........ .....+......+.+++++|+..+   +.....  .. .....+.+
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~id~~g~~~~~~~~-~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (244)
T d1yrba1          81 FNEYLNKILRL-EKENDYVLIDTPGQMETFLFH-EFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGA  158 (244)
T ss_dssp             HHHHHHHHHHH-HHHCSEEEEECCSSHHHHHHS-HHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhh-ccccceeeeccccchhHHHHH-HHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCC
Confidence            01111111121 246899999999986432221 222334444455678999998432   221111  11 11112222


Q ss_pred             -eEEEEccCCCCC
Q 015657          157 -TGAILTKLDGDS  168 (403)
Q Consensus       157 -~GvIlNk~D~~~  168 (403)
                       .-+|+||+|...
T Consensus       159 ~~ivvinK~D~~~  171 (244)
T d1yrba1         159 TTIPALNKVDLLS  171 (244)
T ss_dssp             CEEEEECCGGGCC
T ss_pred             Cceeeeecccccc
Confidence             348999999653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.52  E-value=7.1e-08  Score=82.15  Aligned_cols=43  Identities=21%  Similarity=0.115  Sum_probs=37.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      ++|+.|+|.+||||||++.+|+.+|..+|++|.+|..|.+...
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~~~   43 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGE   43 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCccc
Confidence            4689999999999999999999999999999999998876543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.50  E-value=4.2e-09  Score=90.70  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=33.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      +++|+|+|.+||||||++..|+.+|..+|+++..+..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~   37 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY   37 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            4789999999999999999999999999999987763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.44  E-value=2.1e-07  Score=82.11  Aligned_cols=128  Identities=16%  Similarity=0.137  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      -.|++.|..++||||++..|...+...|....       +..............|+.+......             +.+
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~-------~~~~~~~~~~~Er~rgiTi~~~~~~-------------~~~   63 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKF-------KKYEEIDNAPEERARGITINAAHVE-------------YST   63 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCC-------CCHHHHHSCCEEEETTEEEECEEEE-------------EEC
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchh-------hhhhhcccchhhcCCCccCCcceEE-------------EEe
Confidence            34899999999999999999877766542221       1111000001122334432211000             013


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHH-hhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~-~~~~~~i~GvIlNk~D~~~~  169 (403)
                      .++.+.+|||||...+    ..++.  ..+...|.+++|+|+..|  ....+.+.. .....+..-|++||+|....
T Consensus        64 ~~~~~~~iDtPGh~~f----~~~~~--~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~  134 (196)
T d1d2ea3          64 AARHYAHTDCPGHADY----VKNMI--TGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD  134 (196)
T ss_dssp             SSCEEEEEECSSHHHH----HHHHH--HTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC
T ss_pred             ceeeEEeecCcchHHH----HHHHH--HHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEeccccccc
Confidence            6789999999996533    22221  222345889999999655  122222222 22233444467899996543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4e-07  Score=77.11  Aligned_cols=40  Identities=33%  Similarity=0.377  Sum_probs=36.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      +.|+++|++|+||||++..++..|...|.+|.++.+++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~   41 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVR   41 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence            4689999999999999999999999999999999988754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=1.4e-06  Score=74.67  Aligned_cols=121  Identities=19%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .+|+++|.+||||||+...|.      |.++..+..-   +..         .........                 ..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~------~~~~~~~~~~---~~t---------t~~~~~~~~-----------------~~   50 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLL------GVKVAPISPR---PQT---------TRKRLRGIL-----------------TE   50 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH------TSCCSCCCSS---SCC---------CCSCEEEEE-----------------EE
T ss_pred             cEEEEECCCCCCHHHHHHHHh------CCCceeeccc---CCc---------cccccccee-----------------ee
Confidence            369999999999999998876      5554332211   110         000000000                 02


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHH--HHhhhcCCceEEEEEecccH--HH---HHHHHHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTG--QE---AAALVTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~--~i~~~~~~~~vllVvda~~g--~~---~~~~~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      .+..++++||||...........+.  .....-.++-+++|+|+..+  ..   .....+......+ .-+|+||+|...
T Consensus        51 ~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~p-iilv~NK~Dl~~  129 (178)
T d1wf3a1          51 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAK  129 (178)
T ss_dssp             TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCS
T ss_pred             eeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchh-hhhhhccccccc
Confidence            4678999999998654222111111  11222356888999999543  11   1222222222333 347899999765


Q ss_pred             chhH
Q 015657          169 RGGA  172 (403)
Q Consensus       169 ~~~~  172 (403)
                      ....
T Consensus       130 ~~~~  133 (178)
T d1wf3a1         130 YPEE  133 (178)
T ss_dssp             SHHH
T ss_pred             CHHH
Confidence            5443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=4e-07  Score=82.78  Aligned_cols=126  Identities=17%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC---------------CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQ---------------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK   81 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~---------------G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~   81 (403)
                      -|++.|+.++||||++.+|++.+..-               +..+.      ......|.+ ......|+.+......  
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~------~~~~~~D~~-~~Er~rGiTi~~~~~~--   78 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSF------KYAWVLDKL-KAERERGITIDIALWK--   78 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCC------CHHHHHHHH-HHHHHTTCCCSCSCEE--
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCcc------ceeeecccc-hhhhcceeccccceeE--
Confidence            57888999999999999998765411               11110      001111222 2223344443222110  


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH--------HHHHHHHhhhc
Q 015657           82 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE--------AAALVTTFNIE  153 (403)
Q Consensus        82 ~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~--------~~~~~~~~~~~  153 (403)
                                 +.++++.+.||||||...+-..+..      .+...|.++|||||..|.-        ...........
T Consensus        79 -----------~~~~~~~i~iiDtPGH~df~~~~~~------g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~  141 (239)
T d1f60a3          79 -----------FETPKYQVTVIDAPGHRDFIKNMIT------GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT  141 (239)
T ss_dssp             -----------EECSSEEEEEEECCCCTTHHHHHHH------SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             -----------eccCCEEEEEEECCCcHHHHHHHHH------HHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH
Confidence                       1136789999999998754333332      2234588999999965521        01111122223


Q ss_pred             CCe--eEEEEccCCCCC
Q 015657          154 IGI--TGAILTKLDGDS  168 (403)
Q Consensus       154 ~~i--~GvIlNk~D~~~  168 (403)
                      +++  .-|++||+|...
T Consensus       142 ~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3         142 LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             TTCCEEEEEEECGGGGT
T ss_pred             cCCCeEEEEEECCCCCC
Confidence            333  346799999643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.32  E-value=3.4e-07  Score=82.31  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=39.2

Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDG  166 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~  166 (403)
                      ..++.+.+|||||...+.....      ..+..+|.+++|+|+..+  ......+.... ...+ .-+++||+|.
T Consensus        67 ~~~~~~~~iDtPGh~~f~~~~~------~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iivlNK~D~  134 (227)
T d1g7sa4          67 ETLPGLFFIDTPGHEAFTTLRK------RGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDR  134 (227)
T ss_dssp             GTCCEEEEECCCTTSCCTTSBC------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred             ccccccccccccceecccccch------hcccccceEEEEEecccCcccchhHHHHHhhcCCCe-EEEEEECccC
Confidence            4677899999999654322111      122346899999999544  22333333222 2333 4589999995

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=3.2e-07  Score=77.24  Aligned_cols=41  Identities=27%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      .|++|+|.+||||||++.+|+.+|.++|++|.++..|....
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~~   43 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM   43 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccccc
Confidence            37999999999999999999999999999999999997653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=3.5e-05  Score=74.75  Aligned_cols=117  Identities=14%  Similarity=0.106  Sum_probs=63.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEE---EEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM---LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVl---lVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      .|--|+++|.+|+||||+...|.      |.++.   .+..++.      .     .......+..              
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~------G~~~~~~~~~~~g~~------~-----tT~~~~~~~~--------------  103 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR------GIGNEEEGAAKTGVV------E-----VTMERHPYKH--------------  103 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH------TCCTTSTTSCCCCC---------------CCCEEEEC--------------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh------CCCcCCCccCCCCCC------C-----Cceeeeeeec--------------
Confidence            45568999999999999998876      43221   0000000      0     0001112221              


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                          .....++|+||||........-..+... .....+-+++++|......-...++.....-...-+|+||+|.
T Consensus       104 ----~~~~~~~l~DtPG~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~  174 (400)
T d1tq4a_         104 ----PNIPNVVFWDLPGIGSTNFPPDTYLEKM-KFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS  174 (400)
T ss_dssp             ----SSCTTEEEEECCCGGGSSCCHHHHHHHT-TGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred             ----cCCCeEEEEeCCCcccccccHHHHHHHh-hhhcceEEEEecCCCCCHHHHHHHHHHHHcCCCEEEEEeCccc
Confidence                1345799999999754322111112222 2223466666666644444445555554444556699999984

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.13  E-value=6.3e-06  Score=73.76  Aligned_cols=68  Identities=21%  Similarity=0.185  Sum_probs=41.3

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      .++.+.||||||...+-..+..      .+..+|.+++|+|+..|   |+..........+++-.-|++||+|....
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~------g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMAT------GASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHH------HHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTS
T ss_pred             cceEEEEEeccchhhhhhhhcc------ccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccc
Confidence            4678999999998654333322      22345899999999544   32222211222234445578999997653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=7.5e-07  Score=85.03  Aligned_cols=134  Identities=15%  Similarity=0.245  Sum_probs=67.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CC--cEEEEeccCCChhhHHHHHHhhhccCCce----EeCCCCCCHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ--GK--SCMLVAGDVYRPAAIDQLVILGEQVGVPV----YTAGTEVKPSQI   85 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~--kVllVd~D~~rp~~~~~l~~~~~~~gv~v----~~~~~~~~~~~~   85 (403)
                      ..|-|+++|+.++||||++-.|......-  ..  .....|.+     .      .....++.+    .......... .
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~-----~------~E~eRgiTi~~~~~~l~~~~~~~-~   83 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR-----K------DEQERGITIKSTAISLYSEMSDE-D   83 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------------CCCBCCCEEEEEEECCHH-H
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccc-----h------hHHhcCceEeCCEEEEEeccCcc-c
Confidence            45779999999999999999998655421  11  11111111     0      111112211    1110000000 0


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHH-HhhhcCCeeEEEEc
Q 015657           86 AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT-TFNIEIGITGAILT  162 (403)
Q Consensus        86 ~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~-~~~~~~~i~GvIlN  162 (403)
                      .........++.|-+-||||||...+-.+....+.    +  .|.+++|||+..|  .......+ ....+++ .-+++|
T Consensus        84 ~~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~----~--~D~allVVda~eGv~~qT~~~~~~a~~~~~p-~i~viN  156 (341)
T d1n0ua2          84 VKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR----V--TDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVIN  156 (341)
T ss_dssp             HHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHH----T--CSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             ccchhccccccceEEEEEcCCCcHHHHHHHHHHHh----h--cCceEEEEecccCcchhHHHHHHHHHHcCCC-eEEEEE
Confidence            00000000124566889999999877555544432    2  3899999999655  22222222 2333444 348899


Q ss_pred             cCCC
Q 015657          163 KLDG  166 (403)
Q Consensus       163 k~D~  166 (403)
                      |+|.
T Consensus       157 KiDr  160 (341)
T d1n0ua2         157 KVDR  160 (341)
T ss_dssp             CHHH
T ss_pred             Cccc
Confidence            9995

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.05  E-value=4.1e-06  Score=74.19  Aligned_cols=46  Identities=28%  Similarity=0.437  Sum_probs=39.6

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCCC
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR   55 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~r   55 (403)
                      +.++++.+|+++|++||||||++..|+..|.+ .++++.++|.|..|
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            34678899999999999999999999988854 58899999999544

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=98.05  E-value=3e-05  Score=70.61  Aligned_cols=41  Identities=24%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~   54 (403)
                      +..+++|+|.+|+||||++.++|..++ ..|.+|+++.++..
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~   75 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES   75 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccc
Confidence            347889999999999999999998876 57999999998843

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.02  E-value=8e-06  Score=74.54  Aligned_cols=119  Identities=16%  Similarity=0.182  Sum_probs=68.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .+-.|+++|.+|+||||+...|.      |.++..++.-  .+.+         . ....+..                 
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~il------g~~~~~vs~~--~~~T---------~-~~~~~~~-----------------   75 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSII------GERVVSISPF--QSEG---------P-RPVMVSR-----------------   75 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH------TSCCSCCCSS--SCCC---------S-SCEEEEE-----------------
T ss_pred             CCcEEEEECCCCCcHHHHHHHHh------CCCceeecCC--CCcc---------e-eEEEEEE-----------------
Confidence            44568899999999999998887      7776544421  1111         0 0000100                 


Q ss_pred             HhCCCcEEEEeCCCCccc---cHHhHHHHHHHhhhcCCceEEEEEeccc---HHHHHHHH----HHhhhcC-CeeEEEEc
Q 015657           94 KKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMT---GQEAAALV----TTFNIEI-GITGAILT  162 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~---d~~l~~el~~i~~~~~~~~vllVvda~~---g~~~~~~~----~~~~~~~-~i~GvIlN  162 (403)
                      ...+..++||||||....   +......+........++.+++|++...   .+.....+    ..|.+.+ +-.-||+|
T Consensus        76 ~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t  155 (257)
T d1h65a_          76 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT  155 (257)
T ss_dssp             EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred             EeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEE
Confidence            025678999999998643   3444444444444445577778877621   22222222    2343332 33458999


Q ss_pred             cCCCC
Q 015657          163 KLDGD  167 (403)
Q Consensus       163 k~D~~  167 (403)
                      +.|..
T Consensus       156 ~~D~~  160 (257)
T d1h65a_         156 HAQFS  160 (257)
T ss_dssp             CCSCC
T ss_pred             CcccC
Confidence            99964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.01  E-value=2.9e-06  Score=75.88  Aligned_cols=65  Identities=23%  Similarity=0.257  Sum_probs=39.4

Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHH------------HHHHHHHhhhcCCeeEEEEc
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE------------AAALVTTFNIEIGITGAILT  162 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~------------~~~~~~~~~~~~~i~GvIlN  162 (403)
                      .+++.+.||||||...+-..+..    -  ....|.+++|||+..|-.            ....++.+  .+...-+++|
T Consensus        78 ~~~~~i~iiDtPGH~df~~~~~~----g--~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iN  149 (224)
T d1jnya3          78 TKKYFFTIIDAPGHRDFVKNMIT----G--ASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVN  149 (224)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHH----T--SSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEE
T ss_pred             cCCceeEEeeCCCcHHHHHHHHH----H--HHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEE
Confidence            46789999999998754333322    2  223589999999966521            11111212  2333446799


Q ss_pred             cCCCC
Q 015657          163 KLDGD  167 (403)
Q Consensus       163 k~D~~  167 (403)
                      |+|..
T Consensus       150 K~D~~  154 (224)
T d1jnya3         150 KMDLT  154 (224)
T ss_dssp             CGGGS
T ss_pred             cccCC
Confidence            99965

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.96  E-value=1.6e-05  Score=72.12  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=36.1

Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---------HHHHHHH-HhhhcCCeeEEEEccC
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVT-TFNIEIGITGAILTKL  164 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---------~~~~~~~-~~~~~~~i~GvIlNk~  164 (403)
                      ..++.+.+|||||...+-..+..      ....+|.+++|||+..|.         .....+. .....++..-+++||+
T Consensus        99 ~~~~~i~~iDtPGH~df~~~~~~------g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKm  172 (245)
T d1r5ba3          99 TEHRRFSLLDAPGHKGYVTNMIN------GASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM  172 (245)
T ss_dssp             CSSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred             cccceeeeecccccccchhhhhh------hhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcC
Confidence            35678999999998754333332      223458999999996542         1122221 1222344445889999


Q ss_pred             CCC
Q 015657          165 DGD  167 (403)
Q Consensus       165 D~~  167 (403)
                      |..
T Consensus       173 D~~  175 (245)
T d1r5ba3         173 DEP  175 (245)
T ss_dssp             TST
T ss_pred             CCC
Confidence            974

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.96  E-value=1.7e-05  Score=70.56  Aligned_cols=94  Identities=15%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhh------hccCCceEeC-C-CCCCHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG------EQVGVPVYTA-G-TEVKPSQI   85 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~------~~~gv~v~~~-~-~~~~~~~~   85 (403)
                      +..+++|+|.+|+||||++..+|..+.+.|.+|++++++.........+....      ...+...+.. . ......+.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH  104 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhHHHH
Confidence            45789999999999999999999999999999999998843322222221110      0111111111 1 12344555


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCC
Q 015657           86 AKQGLEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        86 ~~~~l~~~~~~~~D~VIIDtpg  107 (403)
                      +......+...+++++|||.-.
T Consensus       105 ~~~i~~~i~~~~~~~vviDs~~  126 (242)
T d1tf7a2         105 LQIIKSEINDFKPARIAIDSLS  126 (242)
T ss_dssp             HHHHHHHHHTTCCSEEEEECHH
T ss_pred             HHHHHHHHHhcCCceeeeecch
Confidence            5555555556778899999743

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.93  E-value=5.1e-06  Score=71.21  Aligned_cols=47  Identities=28%  Similarity=0.326  Sum_probs=40.8

Q ss_pred             cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657            9 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus         9 ~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .+...+|.+|+|+|++||||||+|..|+..|...+..+..++.|.+.
T Consensus        16 ~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~   62 (198)
T d1rz3a_          16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (198)
T ss_dssp             TSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             hccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccccccc
Confidence            34566789999999999999999999999999999999888877543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.5e-05  Score=73.17  Aligned_cols=90  Identities=20%  Similarity=0.329  Sum_probs=59.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhc-cCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~-~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+++.++|++|+||||+|..++...++.|.+|+++|+.- +.+..   +..++-. .++.+..    ....+...+.++
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~---a~~~Gvd~d~v~~~~----~~~~E~~~~~i~  125 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQ----PDTGEQALEICD  125 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCGGGCEEEC----CSSHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHH---HHHhCCCHHHEEEec----CCCHHHHHHHHH
Confidence            3489999999999999999999999999999999999873 23322   2222211 1121221    122333333344


Q ss_pred             HH-HhCCCcEEEEeCCCCcc
Q 015657           92 EA-KKKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~-~~~~~D~VIIDtpg~l~  110 (403)
                      .+ +....++||||..+.+.
T Consensus       126 ~l~~~~~~~liViDSi~al~  145 (263)
T d1u94a1         126 ALARSGAVDVIVVDSVAALT  145 (263)
T ss_dssp             HHHHHTCCSEEEEECGGGCC
T ss_pred             HHHhcCCCCEEEEECccccc
Confidence            33 24678999999988764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.90  E-value=4.4e-05  Score=70.05  Aligned_cols=90  Identities=23%  Similarity=0.334  Sum_probs=60.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhcc-CCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQV-GVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~~-gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+++.+.|++|+||||+|..++....+.|.+|+++|..- ++|...+   .++-.. ++.++..   .. .+...+.++
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~---~~Gvd~d~i~~~~~---~~-~E~~~~~~~  128 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYAR---ALGVNTDELLVSQP---DN-GEQALEIME  128 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHH---HTTCCGGGCEEECC---SS-HHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHH---HhCCCchhEEEEcC---CC-HHHHHHHHH
Confidence            3579999999999999999999999999999999999883 4454322   222111 1222221   12 233333444


Q ss_pred             HHH-hCCCcEEEEeCCCCcc
Q 015657           92 EAK-KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~~-~~~~D~VIIDtpg~l~  110 (403)
                      .+. ...+++||||+.+.+.
T Consensus       129 ~l~~~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         129 LLVRSGAIDVVVVDSVAALT  148 (268)
T ss_dssp             HHHTTTCCSEEEEECTTTCC
T ss_pred             HHHhcCCCcEEEEecccccc
Confidence            443 4569999999988765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.90  E-value=1.4e-05  Score=65.73  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=25.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .++|+++|++||||||+|..|+.    ......+++.|
T Consensus         2 kklIii~G~pGsGKTTla~~L~~----~~~~~~~~~~d   35 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIA----KNPGFYNINRD   35 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH----HSTTEEEECHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH----hCCCCEEechH
Confidence            46889999999999999976643    33446666765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.89  E-value=0.00011  Score=62.94  Aligned_cols=29  Identities=34%  Similarity=0.556  Sum_probs=26.0

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ...+|.+|++.|++||||||+|..||..+
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999998776

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.87  E-value=3.9e-05  Score=65.22  Aligned_cols=114  Identities=14%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |+++|.+||||||+...|.      |.++.+.+....   .        ....+.+...                  ..+
T Consensus         4 VaivG~~nvGKSTLin~L~------~~~~~~~~~~~~---t--------~~~~~~~~~~------------------~~~   48 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT------RAHPKIAPYPFT---T--------LSPNLGVVEV------------------SEE   48 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC------SSCCEECCCTTC---S--------SCCEEEEEEC------------------SSS
T ss_pred             EEEECCCCCCHHHHHHHHh------CCCCceeccCCC---c--------eeeeeceeee------------------cCC
Confidence            7899999999999998775      555544332110   0        0111111111                  146


Q ss_pred             CcEEEEeCCCCcccc---HHhHHHHHHHhhhcCCceEEEEEeccc-HHHHHHHHH----Hhh---hcCCeeEEEEccCCC
Q 015657           98 VDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVT----TFN---IEIGITGAILTKLDG  166 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d---~~l~~el~~i~~~~~~~~vllVvda~~-g~~~~~~~~----~~~---~~~~i~GvIlNk~D~  166 (403)
                      +.+.++||||.....   .....  ..+......+-+++++|... .........    .+.   ... ..-+|+||+|.
T Consensus        49 ~~~~~~DtpG~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~NK~D~  125 (180)
T d1udxa2          49 ERFTLADIPGIIEGASEGKGLGL--EFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRR-PSLVALNKVDL  125 (180)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCH--HHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHS-CEEEEEECCTT
T ss_pred             CeEEEcCCCeeecCchHHHHHHH--HHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchh-hhhhhhhhhhh
Confidence            789999999965421   11111  12222334466788888732 222222221    111   112 23478999997


Q ss_pred             CCc
Q 015657          167 DSR  169 (403)
Q Consensus       167 ~~~  169 (403)
                      ...
T Consensus       126 ~~~  128 (180)
T d1udxa2         126 LEE  128 (180)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            644

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=7.2e-05  Score=62.93  Aligned_cols=115  Identities=22%  Similarity=0.241  Sum_probs=56.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK   96 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~   96 (403)
                      .|+++|.+||||||+..+|.      |.++.++.-.   +..        ........                  +...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~------~~~~~~~~~~---~~~--------t~~~~~~~------------------~~~~   46 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV------KKKKAIVEDE---EGV--------TRDPVQDT------------------VEWY   46 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH------C-------------------------CCSEEE------------------EEET
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCCcceeccc---Cce--------eecccccc------------------cccc
Confidence            58899999999999998887      4444322211   000        00001100                  0125


Q ss_pred             CCcEEEEeCCCCccccHH---hHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhh-hcCCeeEEEEccCCCC
Q 015657           97 NVDVVIVDTAGRLQIDKA---MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD  167 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~---l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~-~~~~i~GvIlNk~D~~  167 (403)
                      .+.+++.|+||.......   ....-.........+-+++++++..+  .........+. ...+ .-+|+||+|..
T Consensus        47 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~p-viiv~NK~Dl~  122 (171)
T d1mkya1          47 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAENL  122 (171)
T ss_dssp             TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCSH
T ss_pred             ccccccccccceeeeeccccccccccccccccccCcEEEEeeccccccccccccccccccccccc-ccccchhhhhh
Confidence            678999999997543211   11111112222344677778887322  22222222222 2233 34889999964

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.82  E-value=8.3e-06  Score=68.42  Aligned_cols=41  Identities=32%  Similarity=0.480  Sum_probs=33.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEecc
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGD   52 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd~D   52 (403)
                      ..++.+|+++|++||||||++..||..|...+. .+..++.|
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~   44 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD   44 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhH
Confidence            456799999999999999999999999987654 55566655

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.82  E-value=1.9e-05  Score=65.99  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .++|+++|++||||||+|..|+..|   |.++..++.|.+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l---~~~~~~~~~d~~   39 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL   39 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CCCeEEeecchh
Confidence            5799999999999999998888765   566777787744

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00011  Score=66.31  Aligned_cols=42  Identities=19%  Similarity=0.201  Sum_probs=34.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHh----------CCCcEEEEeccCCCh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKK----------QGKSCMLVAGDVYRP   56 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~----------~G~kVllVd~D~~rp   56 (403)
                      ..+.+|+|.+|+||||++..||..++.          .+.+|++++++....
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~   80 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPT   80 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHH
Confidence            367889999999999999999998874          234899999986543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=9.3e-05  Score=62.88  Aligned_cols=115  Identities=19%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      --|+++|.+|+||||+..+|.      |.+..++.--+..+..        ..  ...+.                   .
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~------~~~~~~~~~~~~t~~~--------~~--~~~~~-------------------~   53 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAIL------NKERALVSPIPGTTRD--------PV--DDEVF-------------------I   53 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH------TSTTEEECCCC--------------C--CEEEE-------------------E
T ss_pred             CEEEEECCCCCCHHHHHHHHH------CCCcceeecccccccc--------cc--eeeec-------------------c
Confidence            447888999999999998887      5555444422111100        00  00111                   2


Q ss_pred             CCCcEEEEeCCCCccccH--------HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCC
Q 015657           96 KNVDVVIVDTAGRLQIDK--------AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLD  165 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~--------~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D  165 (403)
                      +++++.++|+||......        .....+  +..+-.++-+++|+|+..+  .............-...-+|+||+|
T Consensus        54 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D  131 (186)
T d1mkya2          54 DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV--VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD  131 (186)
T ss_dssp             TTEEEEESSCSCC-----------CCSCCHHH--HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred             CCceeeeeccCCccccccccccccccchhHHH--HHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchh
Confidence            567889999998653210        000111  1111234788999999533  3333333323222233457889999


Q ss_pred             CC
Q 015657          166 GD  167 (403)
Q Consensus       166 ~~  167 (403)
                      ..
T Consensus       132 ~~  133 (186)
T d1mkya2         132 LV  133 (186)
T ss_dssp             GS
T ss_pred             hh
Confidence            54

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.79  E-value=1.1e-05  Score=74.68  Aligned_cols=42  Identities=21%  Similarity=0.556  Sum_probs=35.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ++-||+|+|.+||||||++..|...|.+.|.++++|..|-|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            344899999999999999999999999999999999999763

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=9e-05  Score=67.91  Aligned_cols=90  Identities=21%  Similarity=0.279  Sum_probs=61.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC-CChhhHHHHHHhhhc-cCCceEeCCCCCCHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~-~rp~~~~~l~~~~~~-~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      ..+++.+.|++|+||||+|..++....+.|..|++||..- +.|...+++   +-. .++-++..    ...+.+.+.++
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~---GvD~d~il~~~~----~~~E~~~~~~~  131 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL---GVDTDSLLVSQP----DTGEQALEIAD  131 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHH---TCCGGGCEEECC----SSHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHh---CCCHHHeEEecC----CCHHHHHHHHH
Confidence            3589999999999999999999999999999999999875 445443333   211 11222221    12333333444


Q ss_pred             HHH-hCCCcEEEEeCCCCcc
Q 015657           92 EAK-KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~~-~~~~D~VIIDtpg~l~  110 (403)
                      .+. ...+++||||+.+.+.
T Consensus       132 ~l~~~~~~~liIiDSi~al~  151 (269)
T d1mo6a1         132 MLIRSGALDIVVIDSVAALV  151 (269)
T ss_dssp             HHHHTTCEEEEEEECSTTCC
T ss_pred             HHHhcCCCCEEEEecccccc
Confidence            433 4569999999988775

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=0.00015  Score=60.30  Aligned_cols=41  Identities=27%  Similarity=0.560  Sum_probs=31.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      ++.+++++++|++||||||++..|+..|   |..  .++.|.....
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l---~~~--~~~~d~~~~~   43 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQL---HAA--FLDGDFLHPR   43 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHH---TCE--EEEGGGGCCH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCC--eechhhhhHH
Confidence            4578999999999999999999999877   333  3455654433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=9.1e-06  Score=69.57  Aligned_cols=40  Identities=45%  Similarity=0.706  Sum_probs=35.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .++.+|+++|++||||||+|..||..|...+.....++.|
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d   56 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   56 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHH
Confidence            4678999999999999999999999999888887777766

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=4.4e-05  Score=65.14  Aligned_cols=38  Identities=26%  Similarity=0.437  Sum_probs=28.1

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ...+|.+|+++|++||||||+|.+|+.   ..|  ...|+.|.
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~---~~~--~~~i~~D~   47 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLV---SAG--YVHVNRDT   47 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTG---GGT--CEEEEHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH---hcC--CEEEchHH
Confidence            345789999999999999999977753   223  34566663

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.67  E-value=0.00014  Score=64.66  Aligned_cols=95  Identities=18%  Similarity=0.211  Sum_probs=53.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      ...|..++++|++|+||||++..|+..+... +.++..+.+........ -+.......+....  ..............
T Consensus        40 ~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  116 (276)
T d1fnna2          40 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA-IIGEIARSLNIPFP--RRGLSRDEFLALLV  116 (276)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH-HHHHHHHHTTCCCC--SSCCCHHHHHHHHH
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhh-hhhhhHHhhhhhhh--hhccchhHHHHHHH
Confidence            3457789999999999999999999999764 56676666654442221 11122222222221  11223334444444


Q ss_pred             HHHHh-CCCcEEEEeCCCCc
Q 015657           91 EEAKK-KNVDVVIVDTAGRL  109 (403)
Q Consensus        91 ~~~~~-~~~D~VIIDtpg~l  109 (403)
                      ..+.. .....+++|..-..
T Consensus       117 ~~~~~~~~~~~~~~~~~d~~  136 (276)
T d1fnna2         117 EHLRERDLYMFLVLDDAFNL  136 (276)
T ss_dssp             HHHHHTTCCEEEEEETGGGS
T ss_pred             HHHhhcccccccchhHHHHh
Confidence            44432 34566666664443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.66  E-value=0.00013  Score=61.68  Aligned_cols=20  Identities=40%  Similarity=0.642  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      .|+++|.+||||||+...|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999998886

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.66  E-value=2.9e-05  Score=66.38  Aligned_cols=67  Identities=21%  Similarity=0.312  Sum_probs=38.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHh-hhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~-~~~~~i~GvIlNk~D~~~~  169 (403)
                      .++.+.++|+||...    +..+....  ....+.+++|+|+..+  .......... ...++ ..+++||+|....
T Consensus        57 ~~~~~~~~d~~g~~~----~~~~~~~~--l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p-~iiv~NKiD~~~~  126 (179)
T d1wb1a4          57 ENYRITLVDAPGHAD----LIRAVVSA--ADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-IIVVITKSDNAGT  126 (179)
T ss_dssp             TTEEEEECCCSSHHH----HHHHHHHH--TTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC-BCEEEECTTSSCH
T ss_pred             CCccccccccccccc----cccchhhh--hhhccccccccccccccchhhhhhhhhhhhcCCc-ceeccccccccCH
Confidence            567889999999653    22222222  2234788999999544  2222222222 22333 4489999997654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=1.7e-05  Score=65.89  Aligned_cols=115  Identities=18%  Similarity=0.207  Sum_probs=60.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |+++|.+||||||+...|.      |.++..+...+...           .........                  ..+
T Consensus         3 I~liG~~n~GKSSLin~l~------g~~~~~~~~~~~~~-----------~~~~~~~~~------------------~~~   47 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLL------NEDRAIVTDIPGTT-----------RDVISEEIV------------------IRG   47 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHH------HHTBCCCCCSSCCS-----------SCSCCEEEE------------------ETT
T ss_pred             EEEECCCCCCHHHHHHHHh------CCCceeeecccccc-----------ccceeEEEE------------------eCC
Confidence            7899999999999998876      33333222111100           000111100                  246


Q ss_pred             CcEEEEeCCCCccccH-----HhHHHHHHHhhhcCCceEEEEEecccH--HHHHHHHHHhhhcCCeeEEEEccCCCCCch
Q 015657           98 VDVVIVDTAGRLQIDK-----AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~-----~l~~el~~i~~~~~~~~vllVvda~~g--~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      +.+.++||||......     .....  .+..+..++-+++|+|+...  .......... .. ...-+++||+|.....
T Consensus        48 ~~~~~~Dt~G~~~~~~~~~~~~~~~~--~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~-~~-~~~i~~~~k~d~~~~~  123 (160)
T d1xzpa2          48 ILFRIVDTAGVRSETNDLVERLGIER--TLQEIEKADIVLFVLDASSPLDEEDRKILERI-KN-KRYLVVINKVDVVEKI  123 (160)
T ss_dssp             EEEEEEESSCCCSSCCTTCCCCCHHH--HHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TT-SSEEEEEEECSSCCCC
T ss_pred             eeEEeccccccccCCccHHHHHHHHH--HHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc-cc-ccceeeeeeccccchh
Confidence            7889999999643211     11111  11112235888999999543  2222222222 22 2344889999976554


Q ss_pred             h
Q 015657          171 G  171 (403)
Q Consensus       171 ~  171 (403)
                      .
T Consensus       124 ~  124 (160)
T d1xzpa2         124 N  124 (160)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.59  E-value=0.00046  Score=59.03  Aligned_cols=20  Identities=40%  Similarity=0.498  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      .|+++|.+||||||+...|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            48999999999999998887

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.55  E-value=5.5e-05  Score=64.44  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|+++|||||+...|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999998775

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00011  Score=60.90  Aligned_cols=113  Identities=20%  Similarity=0.301  Sum_probs=60.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc-eEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-VYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      -|+++|.+||||||+...|.      |.++.++...   |..        ....+. .+.                   .
T Consensus         3 kI~lvG~~nvGKSsLin~l~------~~~~~~~~~~---~~~--------~~~~~~~~~~-------------------~   46 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALA------GREAAIVTDI---AGT--------TRDVLREHIH-------------------I   46 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHH------TSCCSCCCSS---TTC--------CCSCEEEEEE-------------------E
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCCceEeecc---ccc--------ccceEeeeee-------------------c
Confidence            37899999999999998776      4444322211   111        000000 111                   2


Q ss_pred             CCCcEEEEeCCCCccccHHhHHH-HH-HHhhhcCCceEEEEEecccH-----HHH-HHHHHHhhhcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDE-LK-DVKRVLNPTEVLLVVDAMTG-----QEA-AALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~e-l~-~i~~~~~~~~vllVvda~~g-----~~~-~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .++.+.++|+||........... .. .......++.+++++|+...     ... ...........++. +|+||+|.
T Consensus        47 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ii-lv~NK~Dl  124 (161)
T d2gj8a1          47 DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT-VVRNKADI  124 (161)
T ss_dssp             TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEE-EEEECHHH
T ss_pred             cCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhccccccee-eccchhhh
Confidence            56789999999976543221111 11 11222345778888887322     222 22333333344443 89999984

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.55  E-value=4.2e-05  Score=66.95  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=37.4

Q ss_pred             CcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh-hcCCeeEEEEccCCCCCch
Q 015657           98 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~-~~~~i~GvIlNk~D~~~~~  170 (403)
                      ..+.||||||...+    ..++  +..+..++.+++|+|+..+   +...+.+.... ......-|++||+|.....
T Consensus        86 r~~~iiD~PGH~df----~~~~--~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~  156 (205)
T d2qn6a3          86 RRISFIDAPGHEVL----MATM--LSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE  156 (205)
T ss_dssp             EEEEEEECSCHHHH----HHHH--HHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHH
T ss_pred             EEEEEeccchHHHH----Hhhh--hcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccch
Confidence            35899999997533    2221  2223346889999999543   12222222111 1233334668999976443

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=3.8e-05  Score=71.83  Aligned_cols=43  Identities=28%  Similarity=0.420  Sum_probs=38.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC--CCcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~--G~kVllVd~D~~   54 (403)
                      .+.|.+|+|+|.+||||||+|..|+..|++.  +.+|.+|..|-|
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            4678999999999999999999999999863  789999999965

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=0.0003  Score=60.52  Aligned_cols=22  Identities=41%  Similarity=0.691  Sum_probs=18.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .|+ |+++|.+||||||+...|.
T Consensus         3 ~p~-V~lvG~~n~GKTSLln~l~   24 (209)
T d1nrjb_           3 QPS-IIIAGPQNSGKTSLLTLLT   24 (209)
T ss_dssp             CCE-EEEECSTTSSHHHHHHHHH
T ss_pred             CCE-EEEECCCCCCHHHHHHHHh
Confidence            355 6889999999999998776

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.46  E-value=5.8e-05  Score=63.07  Aligned_cols=37  Identities=32%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      .+++|+++|++||||||++..|+.   +.|.++..++.|.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~---~lg~~~~~~~~d~   39 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALAN---LPGVPKVHFHSDD   39 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT---CSSSCEEEECTTH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH---HhCCCEEEecHHH
Confidence            578999999999999999966653   2378888888873

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.4e-05  Score=66.78  Aligned_cols=41  Identities=27%  Similarity=0.488  Sum_probs=35.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC-----CCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~-----G~kVllVd~D~~   54 (403)
                      .|-+|+|+|.+||||||+|..|+..|...     +.+|.++..|-|
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            48899999999999999999999988754     357889999854

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.43  E-value=0.00013  Score=61.29  Aligned_cols=25  Identities=44%  Similarity=0.691  Sum_probs=22.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQ   42 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~   42 (403)
                      |+++|++|+||||++..++..+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            7899999999999999999988754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.0014  Score=56.71  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=34.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      .+.|+|-|..||||||.+..|+.+|.+.|+++.++.--|..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~   42 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   42 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCC
Confidence            46789999999999999999999999999887666544443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=9.1e-05  Score=68.42  Aligned_cols=44  Identities=30%  Similarity=0.383  Sum_probs=37.1

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhC---CCcEEEEeccCC
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVAGDVY   54 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~---G~kVllVd~D~~   54 (403)
                      ..+.|-+|.|+|.+||||||+|..|...|.++   ..+|.++..|-+
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            45678999999999999999999999988764   357888898854

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.30  E-value=0.00022  Score=61.53  Aligned_cols=68  Identities=13%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHh-hhcCCeeEEEEccCCCCCch
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTF-NIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~-~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+.+.+|||||...+    ..++..-  ...++.+++|+|+..+   +.....+... ....+..-+++||+|.....
T Consensus        77 ~~~~~~iDtPGh~~f----~~~~~~~--~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~  148 (195)
T d1kk1a3          77 VRRVSFIDAPGHEAL----MTTMLAG--ASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE  148 (195)
T ss_dssp             EEEEEEEECSSHHHH----HHHHHHC--GGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred             ceeEeeeccchhhhh----hHHhhcc--cccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhH
Confidence            355899999996432    2222221  2235888999998543   2222222211 12334445789999976543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.29  E-value=5.9e-05  Score=63.11  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      -++.|+|+|++||||||+|..||..|
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            36889999999999999999999876

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.0002  Score=65.81  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=40.9

Q ss_pred             CcEEEEeCCCCcccc-----HHhHHHHHHH-h-hhcCCceEE-EEEecc---cHHHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           98 VDVVIVDTAGRLQID-----KAMMDELKDV-K-RVLNPTEVL-LVVDAM---TGQEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d-----~~l~~el~~i-~-~~~~~~~vl-lVvda~---~g~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .+++|||+||.....     ......+.++ . .+..++.++ +|.++.   ...+....++.+.....-.-+|+||+|.
T Consensus       125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~  204 (299)
T d2akab1         125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL  204 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred             CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEecccc
Confidence            468999999987531     1111111111 1 112345554 555552   3345566777777666666689999996


Q ss_pred             CCc
Q 015657          167 DSR  169 (403)
Q Consensus       167 ~~~  169 (403)
                      ...
T Consensus       205 ~~~  207 (299)
T d2akab1         205 MDE  207 (299)
T ss_dssp             SCT
T ss_pred             ccc
Confidence            543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.28  E-value=0.00032  Score=60.96  Aligned_cols=41  Identities=20%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd~D~~   54 (403)
                      +..+++|.|.+|+|||++|.+++...+ ..+.+|++++++..
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~   66 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   66 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC
Confidence            458899999999999999999887654 45689999998743

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.24  E-value=7.2e-05  Score=61.98  Aligned_cols=33  Identities=36%  Similarity=0.636  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ++|+++|++||||||+|..|+..+   +.. .+++.|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~---~~~-~~~~~d   35 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL---DNS-AYIEGD   35 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS---SSE-EEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc---CCC-EEEehH
Confidence            689999999999999998888655   333 356666

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0011  Score=54.92  Aligned_cols=86  Identities=17%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH------HHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------TTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~------~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|.||||.-.... +..   ..  .-.++.+++|.|...........      ........+.-++.||.|....
T Consensus        49 ~~~~~~i~Dt~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~  122 (166)
T d1g16a_          49 KKVKLQIWDTAGQERFRT-ITT---AY--YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR  122 (166)
T ss_dssp             CEEEEEEECCTTGGGTSC-CCH---HH--HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred             EEEEEEEEECCCchhhHH-HHH---HH--HhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhh
Confidence            357788999999643211 111   11  12347889999996654332221      1122233344467788875533


Q ss_pred             ---hhHHHHHHHHhCCCeEEe
Q 015657          170 ---GGAALSVKEVSGKPIKLV  187 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~fi  187 (403)
                         ...+.......+.|+..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~  143 (166)
T d1g16a_         123 VVTADQGEALAKELGIPFIES  143 (166)
T ss_dssp             CSCHHHHHHHHHHHTCCEEEC
T ss_pred             hhhHHHHHHHHHhcCCeEEEE
Confidence               344556667778877443

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.016  Score=51.82  Aligned_cols=166  Identities=13%  Similarity=0.183  Sum_probs=100.8

Q ss_pred             CCEEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhH------------------------HHH--
Q 015657           14 RPTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAI------------------------DQL--   62 (403)
Q Consensus        14 ~~~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~------------------------~~l--   62 (403)
                      +.+.|+++|-  +|.||=.+++.|+..|+.+|++|.++..|||-   |+..                        +.+  
T Consensus         1 ~~kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P~eHGEVfVt~DG~EtDlDlG~YERfl~   80 (272)
T d1vcoa2           1 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLD   80 (272)
T ss_dssp             CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHHHHHT
T ss_pred             CceEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeeccceecCCCCCCchhhceEEEecccccccccccceeeccC
Confidence            3577888866  99999999999999999999999999999873   2221                        000  


Q ss_pred             ---------------------HHhhhccCCceEeCCCCCCHHHHHHHHHH-HHHhCCCcEEEEeCCCCccc--cHHhHHH
Q 015657           63 ---------------------VILGEQVGVPVYTAGTEVKPSQIAKQGLE-EAKKKNVDVVIVDTAGRLQI--DKAMMDE  118 (403)
Q Consensus        63 ---------------------~~~~~~~gv~v~~~~~~~~~~~~~~~~l~-~~~~~~~D~VIIDtpg~l~~--d~~l~~e  118 (403)
                                           .+.++..|-.+...   ..-.+.+++.+. .+...++|++|++-.|....  ....++.
T Consensus        81 ~~l~~~~n~TtG~iy~~vi~kER~G~yLG~TVQvI---PHvTdeIk~~I~~~a~~~~~Di~ivEiGGTVGDiEs~pFlEA  157 (272)
T d1vcoa2          81 MDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVI---PHITDEIKERIRKVAEEQKAEIVVVEVGGTVGDIESLPFLEA  157 (272)
T ss_dssp             SCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTT---THHHHHHHHHHHHHHHHTTCSEEEEEECSCTTSSTTHHHHHH
T ss_pred             CCCcCccchhHHHHHHHHHHHHhhCCccccccccC---CcchHHHHHHHHhcccCCCCCEEEEeccceecccchhhHHHH
Confidence                                 01111111111111   111222333333 33356899999998887765  4567778


Q ss_pred             HHHHhhhcCCceEEEEEec------c-------cHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeE
Q 015657          119 LKDVKRVLNPTEVLLVVDA------M-------TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK  185 (403)
Q Consensus       119 l~~i~~~~~~~~vllVvda------~-------~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~  185 (403)
                      +.++.....+..+++|--.      .       ..|..+..++.+.  +.+. +++-+.+..-....-..+.-.+++|..
T Consensus       158 iRQl~~e~g~~n~~~iHvtlvP~~~~~gE~KTKPTQhSVk~Lr~~G--IqPD-ilvcRse~~l~~~~k~KIslFcnV~~~  234 (272)
T d1vcoa2         158 IRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVG--IQPD-ILVLRSARPVPEEVRRKVALFTNVRPG  234 (272)
T ss_dssp             HHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTT--CCCS-EEEEEESSCCCHHHHHHHHHHHTCCGG
T ss_pred             HHHHHhhcCCCcEEEEeeeeeeecccccccccCchhHHHHHHHhcC--CCCc-eeeeccCCcCCHHHHHHHHHhcCCCHH
Confidence            8888777766666544321      1       1256666555443  2233 555577655555555666677777663

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.18  E-value=0.00011  Score=65.74  Aligned_cols=42  Identities=26%  Similarity=0.502  Sum_probs=34.4

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ....|+.|+++|++|+||||+|..||..+   +..+..+++|.++
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~d~~~   69 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFK   69 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh---hcceEEEecHHHH
Confidence            34578999999999999999998888665   5567888988654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=6.8e-05  Score=61.33  Aligned_cols=32  Identities=34%  Similarity=0.495  Sum_probs=25.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +.|+++|++||||||++..||..|   |..+  ++.|
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L---~~~~--id~~   34 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL---NMEF--YDSD   34 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT---TCEE--EEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh---CCCe--Eeec
Confidence            358888999999999998888765   5544  4554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0021  Score=53.52  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=23.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      -+|+++|.+||||||+..+|.      |.++.+++
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~------~~~~~~~~   34 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLL------GQKISITS   34 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHH------TCSEEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHh------CCCceeec
Confidence            358899999999999998887      66765443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00021  Score=62.75  Aligned_cols=37  Identities=35%  Similarity=0.495  Sum_probs=33.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      +.++|+|.|..||||||.+..|+.+|..+|++|.++.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            4578999999999999999999999999999997765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.0017  Score=56.24  Aligned_cols=31  Identities=35%  Similarity=0.499  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+|+++|..||||||+|    .+|.+.|..|  +|+|
T Consensus         3 ~iIgITG~igSGKStv~----~~l~~~G~~v--idaD   33 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIA----NLFTDLGVPL--VDAD   33 (205)
T ss_dssp             EEEEEECSTTSCHHHHH----HHHHTTTCCE--EEHH
T ss_pred             EEEEEECCCCCCHHHHH----HHHHHCCCeE--EEch
Confidence            68899999999999987    5667778765  5777

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.12  E-value=0.00026  Score=58.76  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=36.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh----hcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN----IEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~----~~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.++|+||.....    .....  .....+.+++|+|....   .++........    ..-.+.-+|.||.|...
T Consensus        44 ~~~~~~~~D~~G~~~~~----~~~~~--~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  117 (165)
T d1ksha_          44 RGFKLNIWDVGGQKSLR----SYWRN--YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG  117 (165)
T ss_dssp             TTEEEEEEEECCSHHHH----TTGGG--GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             cccceeeeecCcchhhh----hHHHh--hhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccc
Confidence            57889999999953211    00001  11235788999998433   33333332221    11224557889999653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.11  E-value=0.00012  Score=60.98  Aligned_cols=26  Identities=35%  Similarity=0.548  Sum_probs=22.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++..|+++|++||||||++..|+..|
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            45668999999999999998888665

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00015  Score=62.43  Aligned_cols=30  Identities=33%  Similarity=0.479  Sum_probs=25.7

Q ss_pred             ccCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           10 FAKSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        10 ~~~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +++.+..+|++.|++||||||+|..||..|
T Consensus         3 ~~~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           3 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            445667899999999999999999998766

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.08  E-value=0.00072  Score=56.51  Aligned_cols=111  Identities=20%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      .+.--|+++|.+||||||+...|.      +.+..-+.                ...++.....                
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~------~~~~~~~~----------------~~~~~~~~~i----------------   55 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLA------SEDISHIT----------------PTQGFNIKSV----------------   55 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHC------CSCCEEEE----------------EETTEEEEEE----------------
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh------cCCCCcce----------------eeeeeeEEEe----------------
Confidence            344568899999999999997663      22221111                0111221111                


Q ss_pred             HHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhhh----cCCeeEEEEccCC
Q 015657           93 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI----EIGITGAILTKLD  165 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~~----~~~i~GvIlNk~D  165 (403)
                       ...++.+.+.|+++.-......    ...  .-.++.+++|+|....   .++......+..    .-.+.-++.||.|
T Consensus        56 -~~~~~~~~i~d~~g~~~~~~~~----~~~--~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~D  128 (176)
T d1fzqa_          56 -QSQGFKLNVWDIGGQRKIRPYW----RSY--FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD  128 (176)
T ss_dssp             -EETTEEEEEEECSSCGGGHHHH----HHH--HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred             -ccCCeeEeEeeccccccchhHH----HHH--hhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecc
Confidence             1246889999999875432111    111  2235889999998543   333332222211    1122347789999


Q ss_pred             CCC
Q 015657          166 GDS  168 (403)
Q Consensus       166 ~~~  168 (403)
                      ...
T Consensus       129 l~~  131 (176)
T d1fzqa_         129 LLT  131 (176)
T ss_dssp             STT
T ss_pred             ccc
Confidence            754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.07  E-value=0.00014  Score=60.26  Aligned_cols=26  Identities=50%  Similarity=0.676  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      |+++|++||||||+|..||..|   |+.+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l---~~~~   32 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS---GLKY   32 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCcE
Confidence            6689999999999998888665   6665

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0014  Score=54.16  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.+.||+|.........    ..  .-.++.+++|.|..........      +..+....++ -+|.||+|... 
T Consensus        49 ~~~~~~i~d~~g~~~~~~~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i-ilVgnK~Dl~~~  121 (164)
T d1z2aa1          49 EDVRLMLWDTAGQEEFDAITK----AY--YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKIDLLDD  121 (164)
T ss_dssp             EEEEEEEECCTTGGGTTCCCH----HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGGGGGG
T ss_pred             ceeeeeeeccCCccchhhhhh----hh--hccCceEEEEEeccchhhhhhcccccccccccCCCceE-EEeeccCCcccc
Confidence            357889999998654321111    11  1235788999998655433222      2222334443 36779999542 


Q ss_pred             ---chhHHHHHHHHhCCCeE
Q 015657          169 ---RGGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi~  185 (403)
                         ....+....+..++|+.
T Consensus       122 ~~v~~~~~~~~~~~~~~~~~  141 (164)
T d1z2aa1         122 SCIKNEEAEGLAKRLKLRFY  141 (164)
T ss_dssp             CSSCHHHHHHHHHHHTCEEE
T ss_pred             eeeeehhhHHHHHHcCCEEE
Confidence               23445666777787763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00034  Score=60.33  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=32.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|+|.|.-||||||++..|+..|..+|++|.++..-
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            588899999999999999999999999999877643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.0018  Score=53.86  Aligned_cols=82  Identities=15%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.|.||||.-..     ..+... ..-.++.+++|.|....+.......      .....-...-+|.||.|.... 
T Consensus        53 ~~~l~~wDt~G~e~~-----~~~~~~-~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  126 (169)
T d3raba_          53 RIKLQIWDTAGQERY-----RTITTA-YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER  126 (169)
T ss_dssp             EEEEEEEEECCSGGG-----HHHHHT-TTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGC
T ss_pred             eEEEEEEECCCchhh-----HHHHHH-HHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccccc
Confidence            467889999996432     111111 1224588999999966544433221      112222233467799996532 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.|+
T Consensus       127 ~v~~~~~~~~~~~~~~~~  144 (169)
T d3raba_         127 VVSSERGRQLADHLGFEF  144 (169)
T ss_dssp             CSCHHHHHHHHHHHTCEE
T ss_pred             ccchhhhHHHHHHcCCEE
Confidence               234455666677765

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0038  Score=53.99  Aligned_cols=31  Identities=32%  Similarity=0.530  Sum_probs=25.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .+|+|+|..||||||+|    .+|.+.|+.  ++|+|
T Consensus         4 ~iIgitG~igSGKStv~----~~l~~~G~~--vidaD   34 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVA----NAFADLGIN--VIDAD   34 (208)
T ss_dssp             EEEEEECCTTSCHHHHH----HHHHHTTCE--EEEHH
T ss_pred             EEEEEECCCcCCHHHHH----HHHHHCCCc--EEEch
Confidence            48999999999999988    567788875  45777

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00076  Score=56.35  Aligned_cols=83  Identities=19%  Similarity=0.171  Sum_probs=46.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH------HHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------TTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~------~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||.-..     ..+... ..-.++.+++|.|...........      ........+..+|.||.|....
T Consensus        52 ~~~~l~i~Dt~G~e~~-----~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~  125 (171)
T d2ew1a1          52 EKVKLQIWDTAGQERF-----RSITQS-YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER  125 (171)
T ss_dssp             EEEEEEEEEECCSGGG-----HHHHGG-GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEEEEEECCCchhh-----HHHHHH-HHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccc
Confidence            3578899999996321     111111 112457889999875543322221      1222222345578899995432


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+....+..+.|+
T Consensus       126 ~~v~~~~~~~~~~~~~~~~  144 (171)
T d2ew1a1         126 REVSQQRAEEFSEAQDMYY  144 (171)
T ss_dssp             CSSCHHHHHHHHHHHTCCE
T ss_pred             cchhhhHHHHHHHhCCCEE
Confidence                234556677778776

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00017  Score=60.41  Aligned_cols=32  Identities=44%  Similarity=0.769  Sum_probs=25.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      |+|| ++|++||||||++..||..|   |+.  ++|.|
T Consensus         2 p~Iv-liG~~G~GKSTig~~La~~l---~~~--fiD~D   33 (165)
T d2iyva1           2 PKAV-LVGLPGSGKSTIGRRLAKAL---GVG--LLDTD   33 (165)
T ss_dssp             CSEE-EECSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CcEE-EECCCCCCHHHHHHHHHHHh---CCC--eEeec
Confidence            6655 55999999999999998777   444  56777

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00026  Score=60.57  Aligned_cols=29  Identities=31%  Similarity=0.523  Sum_probs=25.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      |.+|+|.|++||||||.|..||..|   |+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~---g~~~   29 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY---GYTH   29 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH---CCEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh---CCce
Confidence            6789999999999999999999876   5544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.0018  Score=55.63  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=18.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +.|+++|.+||||||+...|.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~   21 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLL   21 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999997775

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0045  Score=51.09  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=45.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH------HHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------TTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~------~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|.|+||...... +..   ..  .-.++.+++|.|....+......      ........+.-++.||.|....
T Consensus        51 ~~~~l~i~D~~g~~~~~~-~~~---~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~  124 (166)
T d1z0fa1          51 QKIKLQIWDTAGQERFRA-VTR---SY--YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ  124 (166)
T ss_dssp             EEEEEEEEECTTGGGTCH-HHH---HH--HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEEEEeccCCchhHHH-HHH---HH--hcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhh
Confidence            457899999999643211 111   11  12357889999886543332221      2222223344577799996432


Q ss_pred             h----hHHHHHHHHhCCCe
Q 015657          170 G----GAALSVKEVSGKPI  184 (403)
Q Consensus       170 ~----~~~~~~~~~~g~pi  184 (403)
                      .    ..+....+..+.|.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~  143 (166)
T d1z0fa1         125 RDVTYEEAKQFAEENGLLF  143 (166)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccHHHHHHHHHHHcCCEE
Confidence            2    34555666677665

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.94  E-value=0.00081  Score=59.03  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +.+.|++|+|||.++.+++..+.+++++|.++++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~   73 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   73 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence            78999999999999999999999999999988865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0028  Score=52.65  Aligned_cols=83  Identities=6%  Similarity=-0.128  Sum_probs=42.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHh---hhcCC-eeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF---NIEIG-ITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~---~~~~~-i~GvIlNk~D~~~  168 (403)
                      ..+++.|.||||.-... .+.   ...  .-.++.+++|.|..........   ...+   ..... +.-+|.||+|...
T Consensus        46 ~~~~l~i~D~~g~e~~~-~~~---~~~--~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~  119 (168)
T d2gjsa1          46 EEASLMVYDIWEQDGGR-WLP---GHC--MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR  119 (168)
T ss_dssp             EEEEEEEEECC--------CH---HHH--HTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG
T ss_pred             cccceeeeecccccccc-eec---ccc--hhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhh
Confidence            46889999999964321 111   111  1245888999998655333332   2222   11122 2347779999643


Q ss_pred             c----hhHHHHHHHHhCCCe
Q 015657          169 R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi  184 (403)
                      .    ...+.......+.|.
T Consensus       120 ~~~v~~~~~~~~~~~~~~~~  139 (168)
T d2gjsa1         120 SREVSVDEGRACAVVFDCKF  139 (168)
T ss_dssp             GCCSCHHHHHHHHHHHTSEE
T ss_pred             hcchhHHHHHHHHHhcCCEE
Confidence            2    234455666777765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.002  Score=53.76  Aligned_cols=82  Identities=13%  Similarity=0.086  Sum_probs=38.6

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---H---hhhcCCeeEEEEccCCCCCch
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---T---FNIEIGITGAILTKLDGDSRG  170 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~---~~~~~~i~GvIlNk~D~~~~~  170 (403)
                      .+.+-|.||||......     +.. ...-.++.+++|+|.....+......   .   ....-.+..+|.||.|.....
T Consensus        54 ~~~l~i~D~~G~e~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~  127 (173)
T d2fu5c1          54 RIKLQIWDTAGQERFRT-----ITT-AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR  127 (173)
T ss_dssp             EEEEEEEEC--------------CC-TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred             EEEEEEEECCCchhhHH-----HHH-HhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhc
Confidence            57788899999543211     000 01224588999999866543333221   1   112223455888999965422


Q ss_pred             ----hHHHHHHHHhCCCe
Q 015657          171 ----GAALSVKEVSGKPI  184 (403)
Q Consensus       171 ----~~~~~~~~~~g~pi  184 (403)
                          ..+.......+.++
T Consensus       128 ~~~~~~~~~~~~~~~~~~  145 (173)
T d2fu5c1         128 QVSKERGEKLALDYGIKF  145 (173)
T ss_dssp             CSCHHHHHHHHHHHTCEE
T ss_pred             ccHHHHHHHHHHhcCCEE
Confidence                22334445566655

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0015  Score=59.03  Aligned_cols=70  Identities=20%  Similarity=0.343  Sum_probs=46.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..|+-++++|++|+|||+++..||..+   |..+..+++.-....                +..    .....+++.++.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~~~l~~~----------------~~g----~~~~~l~~~f~~   99 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM----------------FVG----VGASRVRDMFEQ   99 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS----------------CCC----CCHHHHHHHHHH
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEhHHhhhc----------------chh----HHHHHHHHHHHH
Confidence            457889999999999999999999776   667776665421100                000    123446666777


Q ss_pred             HHhCCCcEEEEeC
Q 015657           93 AKKKNVDVVIVDT  105 (403)
Q Consensus        93 ~~~~~~D~VIIDt  105 (403)
                      ++....-+++||-
T Consensus       100 A~~~~P~il~iDe  112 (256)
T d1lv7a_         100 AKKAAPCIIFIDE  112 (256)
T ss_dssp             HHTTCSEEEEETT
T ss_pred             HHHcCCEEEEEEC
Confidence            7655556888873

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.0012  Score=57.54  Aligned_cols=96  Identities=14%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH------hCCCcEEEEeccCCChhhH-HHH-HHhh-----hccCCceEeCCCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAAI-DQL-VILG-----EQVGVPVYTAGTEV   80 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~------~~G~kVllVd~D~~rp~~~-~~l-~~~~-----~~~gv~v~~~~~~~   80 (403)
                      +.+++.|+|.+|+||||++..++...+      ..|.++++++......... ... ..+.     ....+.+.......
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD  112 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEECCSTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcceEEEeccchh
Confidence            347899999999999999999987653      2467899998875543221 111 1110     11122333333333


Q ss_pred             CHHHHHHHHHHHHHhCCCcEEEEeCCCCc
Q 015657           81 KPSQIAKQGLEEAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~D~VIIDtpg~l  109 (403)
                      ...................++++|....+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~ds~~~~  141 (251)
T d1szpa2         113 HQLRLLDAAAQMMSESRFSLIVVDSVMAL  141 (251)
T ss_dssp             THHHHHHHTHHHHHHSCEEEEEEETGGGG
T ss_pred             HHHHHHHHHHHHhhccccceeeehhhhhh
Confidence            33333333344444466788888876544

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.89  E-value=0.00079  Score=56.38  Aligned_cols=67  Identities=21%  Similarity=0.194  Sum_probs=38.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHh----hhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTF----NIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~----~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|+||.........      .....++.+++|+|.....   .+.......    ...-.+..++.||.|...
T Consensus        54 ~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~  127 (173)
T d1e0sa_          54 KNVKFNVWDVGGQDKIRPLWR------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD  127 (173)
T ss_dssp             TTEEEEEEEESCCGGGHHHHG------GGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             cceeeEEecCCCcchhhhHHH------hhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccc
Confidence            467899999999764321111      1223468899999985432   222222221    112234568999999653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.0004  Score=59.25  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=27.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .|-+|+|+|..||||||+|    .+|.+.|++|.  ++|
T Consensus         2 ~p~IIgitG~~gSGKstva----~~l~~~g~~~~--~~D   34 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVA----ALLRSWGYPVL--DLD   34 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHH----HHHHHTTCCEE--EHH
T ss_pred             CCEEEEEECCCCCCHHHHH----HHHHHCCCeEE--Ecc
Confidence            5889999999999999998    56667898874  555

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.028  Score=50.18  Aligned_cols=166  Identities=11%  Similarity=0.186  Sum_probs=94.6

Q ss_pred             EEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHHHHHhhhc-------------------cCC
Q 015657           16 TVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGEQ-------------------VGV   71 (403)
Q Consensus        16 ~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~l~~~~~~-------------------~gv   71 (403)
                      +.|+++|-  +|.||=.+++.|+..|+.+|++|.++..|||-   |+...+.. +++-                   .++
T Consensus         2 KyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~e-HGEvfVt~DG~EtDlDlG~YERFl~~   80 (273)
T d2vo1a1           2 KYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYE-HGEVFVLDDGGEVDLDLGNYERFLDI   80 (273)
T ss_dssp             EEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC-----------------------------------
T ss_pred             eEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCHHH-HhhhheecccccccccCcchHHHhcC
Confidence            56888865  99999999999999999999999999999973   33322210 1110                   000


Q ss_pred             ce-----EeC-----------------CCCCCH----HHHHHHHHHHH-------HhCCCcEEEEeCCCCccc--cHHhH
Q 015657           72 PV-----YTA-----------------GTEVKP----SQIAKQGLEEA-------KKKNVDVVIVDTAGRLQI--DKAMM  116 (403)
Q Consensus        72 ~v-----~~~-----------------~~~~~~----~~~~~~~l~~~-------~~~~~D~VIIDtpg~l~~--d~~l~  116 (403)
                      .+     ++.                 +....-    .+.+++.+..+       ...++|++|++-.|...+  ....+
T Consensus        81 ~l~~~~n~TtG~iy~~Vi~kER~G~yLGkTVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Di~IvEIGGTVGDIEs~pFl  160 (273)
T d2vo1a1          81 RLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI  160 (273)
T ss_dssp             -----CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGHHHH
T ss_pred             CccccccccHHHHHHHHHHHHhccccccccCCcCCCHhHHHHHHHHHhhcccccccCCCCcEEEEEcCcccccchhcHHH
Confidence            00     000                 000000    11123333332       134689999998887664  34567


Q ss_pred             HHHHHHhhhcCCceEEEEEe-------c------ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCC
Q 015657          117 DELKDVKRVLNPTEVLLVVD-------A------MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP  183 (403)
Q Consensus       117 ~el~~i~~~~~~~~vllVvd-------a------~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~p  183 (403)
                      +.+.++.....++.++++--       +      ...|..+..++.+.-.  +. +++-+.+..-....-..+.-.+++|
T Consensus       161 EAiRQl~~e~g~~n~~~iHvtlvP~~~~~gE~KTKPTQhSVkeLrs~GIq--PD-ilvcRse~~l~~~~k~KIslFcnV~  237 (273)
T d2vo1a1         161 EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLS--PD-LVVCRCSNPLDTSVKEKISMFCHVE  237 (273)
T ss_dssp             HHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHTCC--CS-EEEEECSSCCCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhCCcceEEEeeccccccccchhhcccchhHHHHHHHHcCCC--CC-eeeeccCCCCCHHHHHHHHHhcCCC
Confidence            77777777666665544421       1      1226666666654322  22 6677777655555556666677776


Q ss_pred             eE
Q 015657          184 IK  185 (403)
Q Consensus       184 i~  185 (403)
                      ..
T Consensus       238 ~~  239 (273)
T d2vo1a1         238 PE  239 (273)
T ss_dssp             GG
T ss_pred             hh
Confidence            64

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.81  E-value=0.0014  Score=59.07  Aligned_cols=42  Identities=14%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML   48 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll   48 (403)
                      +++|.-.+..+++++|+.||||||++..|+..+.-..=.|.+
T Consensus        33 ~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i   74 (253)
T d3b60a1          33 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM   74 (253)
T ss_dssp             EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred             ceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEE
Confidence            445544566789999999999999998887655433224543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0011  Score=59.54  Aligned_cols=42  Identities=17%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML   48 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll   48 (403)
                      +++|.-.+..+++|+|+.||||||++..|+..+.-..=+|.+
T Consensus        21 ~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i   62 (241)
T d2pmka1          21 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI   62 (241)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEE
Confidence            345554566789999999999999998888665432224533

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.79  E-value=0.00072  Score=57.06  Aligned_cols=113  Identities=23%  Similarity=0.277  Sum_probs=57.4

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      ..++.--|+++|.+||||||+...|.      +....-     ..|           ..+..+...              
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~------~~~~~~-----~~~-----------t~~~~~~~~--------------   56 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQ------IGEVVT-----TKP-----------TIGFNVETL--------------   56 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTC------CSEEEE-----ECS-----------STTCCEEEE--------------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHh------cCCCCc-----ccc-----------ccceEEEEE--------------
Confidence            34445557899999999999997653      222110     001           112222211              


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHhh----hcCCeeEEEEcc
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN----IEIGITGAILTK  163 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~~----~~~~i~GvIlNk  163 (403)
                         ...++.+.+.|+||.........      .....++.+++|+|....   .++........    ..-.+.-|+.||
T Consensus        57 ---~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK  127 (182)
T d1moza_          57 ---SYKNLKLNVWDLGGQTSIRPYWR------CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK  127 (182)
T ss_dssp             ---EETTEEEEEEEEC----CCTTGG------GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEEC
T ss_pred             ---eeCCEEEEEEecccccccchhHH------hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEe
Confidence               12567899999998754311100      011234788999998433   23333222221    111234477899


Q ss_pred             CCCCC
Q 015657          164 LDGDS  168 (403)
Q Consensus       164 ~D~~~  168 (403)
                      +|...
T Consensus       128 ~Dl~~  132 (182)
T d1moza_         128 QDQPG  132 (182)
T ss_dssp             TTSTT
T ss_pred             ecccc
Confidence            99754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.76  E-value=0.00031  Score=59.96  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      |..|++.|++||||||+|..|+..+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4457899999999999999998777

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0091  Score=53.26  Aligned_cols=167  Identities=18%  Similarity=0.270  Sum_probs=97.7

Q ss_pred             CEEEEEEcC--CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC---hhhHHH------------------HHHhhhccCC
Q 015657           15 PTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQ------------------LVILGEQVGV   71 (403)
Q Consensus        15 ~~iI~v~G~--gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r---p~~~~~------------------l~~~~~~~gv   71 (403)
                      .+.|+++|-  +|.||=.+|+.|+..|+.+|++|..+..|||-   |+...+                  +-....-.++
T Consensus         3 tkyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPYlNvD~GtmsP~eHGEvfVt~DG~EtDlDlG~YERFl~~   82 (266)
T d1s1ma2           3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRT   82 (266)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHHHHHHCSS
T ss_pred             ceEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCchhhceeEEeccccccccCccceeccCCC
Confidence            567888866  99999999999999999999999999999973   332111                  1000000010


Q ss_pred             ce-----Ee-----------------CCCCC----CHHHHHHHHHHHHHhCCCcEEEEeCCCCccc--cHHhHHHHHHHh
Q 015657           72 PV-----YT-----------------AGTEV----KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVK  123 (403)
Q Consensus        72 ~v-----~~-----------------~~~~~----~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~--d~~l~~el~~i~  123 (403)
                      .+     ++                 .+...    .-.+.+++.+... ..++|++|++-.|....  ....++.+.++.
T Consensus        83 ~l~~~~niTtGkiy~~Vi~kER~G~yLG~TVQvIPHiTdeIk~~I~~~-~~~~Di~ivEiGGTVGDIEs~pFlEAiRQl~  161 (266)
T d1s1ma2          83 KMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEG-GEGHDVVLVEIGGTVGDIESLPFLEAIRQMA  161 (266)
T ss_dssp             CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHH-HTTCSEEEEEECSCTTSSTTHHHHHHHHHHH
T ss_pred             CCcCccccchhHHHHHHHHHhhccccccCcccccCchHHHHHHHHHhc-CCCCCEEEEeccceechhhcchHHHHHHHHH
Confidence            00     00                 00000    0112234444444 36899999998887764  446777778887


Q ss_pred             hhcCCceEEEEEe-------c------ccHHHHHHHHHHhhhcCCeeEEEEccCCCCCchhHHHHHHHHhCCCeE
Q 015657          124 RVLNPTEVLLVVD-------A------MTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK  185 (403)
Q Consensus       124 ~~~~~~~vllVvd-------a------~~g~~~~~~~~~~~~~~~i~GvIlNk~D~~~~~~~~~~~~~~~g~pi~  185 (403)
                      ..+.++.+++|--       +      ...|..+..++.+.  +.+. +++-+.+..-....-..+.-.+++|..
T Consensus       162 ~e~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLrs~G--IqPD-ilvcRse~~l~~~~k~KIslFcnV~~~  233 (266)
T d1s1ma2         162 VEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIG--IQPD-ILICRSDRAVPANERAKIALFCNVPEK  233 (266)
T ss_dssp             HHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTT--CCCS-EEEEEESSCCCHHHHHHHHHTTCCCSS
T ss_pred             HhcCCCCEEEEeeccceeeccccccccchHHHHHHHHHhcC--CCCC-eEeeccccCCCHHHHHHHHhhcCCChh
Confidence            7776666655421       1      11255555555433  2222 566666655444455555556666654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.71  E-value=0.00056  Score=58.24  Aligned_cols=26  Identities=35%  Similarity=0.463  Sum_probs=21.8

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++.+|| +.|++||||||+|..||..|
T Consensus         2 ~~~rii-l~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAV-LLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEE-EECCCCCCHHHHHHHHHHHh
Confidence            456766 57999999999999999776

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.71  E-value=0.00037  Score=59.80  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ++++|++.|+|||||||+|..||..+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999998888654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.69  E-value=0.00052  Score=57.22  Aligned_cols=30  Identities=33%  Similarity=0.555  Sum_probs=24.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      |+++|++||||||++..||..|   |+.  ++|.|
T Consensus         3 I~liG~~GsGKsTi~k~La~~l---~~~--~~d~d   32 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL---DLV--FLDSD   32 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH---TCE--EEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCC--EEecC
Confidence            7788999999999999999887   443  56776

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.69  E-value=0.0024  Score=57.13  Aligned_cols=70  Identities=27%  Similarity=0.334  Sum_probs=43.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec-cCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~-D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      .+++-|+++|++|+|||+++..||..+   |..+.-+++ |...              +      .........+++.++
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~--------------g------~~~~~~~~~i~~if~   94 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKMI--------------G------FSETAKCQAMKKIFD   94 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGGCT--------------T------CCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcc---cccccccccccccc--------------c------ccccchhhhhhhhhh
Confidence            456779999999999999999998765   555554432 1100              0      000111234566677


Q ss_pred             HHHhCCCcEEEEeC
Q 015657           92 EAKKKNVDVVIVDT  105 (403)
Q Consensus        92 ~~~~~~~D~VIIDt  105 (403)
                      .+....+-+++||=
T Consensus        95 ~A~~~~p~il~iDE  108 (246)
T d1d2na_          95 DAYKSQLSCVVVDD  108 (246)
T ss_dssp             HHHTSSEEEEEECC
T ss_pred             hhhhcccceeehhh
Confidence            77655566888885

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.003  Score=52.82  Aligned_cols=83  Identities=17%  Similarity=0.050  Sum_probs=43.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH------HHhhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------TTFNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~------~~~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+-|.|++|..........      ..-.++.+++|.|.....+.....      ..+...--+.-+|.||+|....
T Consensus        51 ~~~~~~i~d~~g~e~~~~~~~~------~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~  124 (175)
T d2f9la1          51 KTIKAQIWDTAGQERYRRITSA------YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL  124 (175)
T ss_dssp             EEEEEEEEECSSGGGTTCCCHH------HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEEEecccCCcHHHHHHHHH------HhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccccc
Confidence            3578889999996432111111      112357889999986554333222      2222111234467799996532


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...........+.|+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~  143 (175)
T d2f9la1         125 RAVPTDEARAFAEKNNLSF  143 (175)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             ccchHHHHHHhhcccCceE
Confidence                123344444555555

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0028  Score=52.20  Aligned_cols=83  Identities=11%  Similarity=0.004  Sum_probs=45.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH------hhhcCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT------FNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~------~~~~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.|.|++|.-.... ...     .....++.+++|.|.............      ....-...-+|.||.|... 
T Consensus        47 ~~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~  120 (164)
T d1yzqa1          47 RTIRLQLWDTAGQERFRS-LIP-----SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK  120 (164)
T ss_dssp             CEEEEEEEEECCSGGGGG-GHH-----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred             CceeeeecccCCcchhcc-chH-----HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhh
Confidence            346788999999754311 111     112245888999998655444333221      1111223447779999542 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+.......+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~  139 (164)
T d1yzqa1         121 RQVSIEEGERKAKELNVMF  139 (164)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             hhhhHHHHHHHHHHcCCEE
Confidence               1234455566666665

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.56  E-value=0.0043  Score=56.80  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=40.5

Q ss_pred             CcEEEEeCCCCccccH-----HhHHHHHHHh--hhcCCceEEEEE-ecc---cHHHHHHHHHHhhhcCCeeEEEEccCCC
Q 015657           98 VDVVIVDTAGRLQIDK-----AMMDELKDVK--RVLNPTEVLLVV-DAM---TGQEAAALVTTFNIEIGITGAILTKLDG  166 (403)
Q Consensus        98 ~D~VIIDtpg~l~~d~-----~l~~el~~i~--~~~~~~~vllVv-da~---~g~~~~~~~~~~~~~~~i~GvIlNk~D~  166 (403)
                      .++.||||||......     .......++.  .+..++.+++++ ++.   ..+.....++.+.....-.-+|+||+|.
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~  210 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL  210 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEecccc
Confidence            4788999999875321     1111111111  122456655444 542   2355666677776666566689999997


Q ss_pred             CCchh
Q 015657          167 DSRGG  171 (403)
Q Consensus       167 ~~~~~  171 (403)
                      .....
T Consensus       211 ~~~~~  215 (306)
T d1jwyb_         211 MDKGT  215 (306)
T ss_dssp             SCSSC
T ss_pred             ccchh
Confidence            64443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0039  Score=51.63  Aligned_cols=82  Identities=16%  Similarity=0.093  Sum_probs=45.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH------HHhh---hcCCeeEEEEccCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------TTFN---IEIGITGAILTKLDG  166 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~------~~~~---~~~~i~GvIlNk~D~  166 (403)
                      ..+.+.+.|++|...........      .-.++.+++|.|...........      ....   ...+ .-+|.||+|.
T Consensus        48 ~~~~l~~~d~~g~~~~~~~~~~~------~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilVgnK~Dl  120 (171)
T d2erxa1          48 SICTLQITDTTGSHQFPAMQRLS------ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDE  120 (171)
T ss_dssp             EEEEEEEEECCSCSSCHHHHHHH------HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred             ccceecccccccccccccccccc------ccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCc-EEEEeecccc
Confidence            35778899999976542211111      11247889999986543333221      1111   1222 3467799995


Q ss_pred             CC----chhHHHHHHHHhCCCe
Q 015657          167 DS----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       167 ~~----~~~~~~~~~~~~g~pi  184 (403)
                      ..    ....+.......++|.
T Consensus       121 ~~~~~v~~~e~~~~~~~~~~~~  142 (171)
T d2erxa1         121 SPSREVQSSEAEALARTWKCAF  142 (171)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEE
T ss_pred             cccccccHHHHHHHHHHcCCeE
Confidence            42    2244566677778765

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.0024  Score=57.21  Aligned_cols=70  Identities=26%  Similarity=0.325  Sum_probs=45.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..|+-+++.|++|+|||+++..||..+   |.++..+++.        .+.  ....          ......+++.+..
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~---~~~~~~i~~~--------~l~--~~~~----------g~~~~~l~~~f~~   96 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGS--------DFV--EMFV----------GVGAARVRDLFET   96 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH--------HHH--HSCT----------THHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHc---CCCEEEEEhH--------Hhh--hccc----------cHHHHHHHHHHHH
Confidence            346779999999999999999998654   7788777753        221  1100          0123345666777


Q ss_pred             HHhCCCcEEEEeC
Q 015657           93 AKKKNVDVVIVDT  105 (403)
Q Consensus        93 ~~~~~~D~VIIDt  105 (403)
                      ++....-+++||-
T Consensus        97 a~~~~p~Ii~iDe  109 (247)
T d1ixza_          97 AKRHAPCIVFIDE  109 (247)
T ss_dssp             HTTSSSEEEEEET
T ss_pred             HHHcCCEEEEEEC
Confidence            6544455888884

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.021  Score=50.03  Aligned_cols=29  Identities=34%  Similarity=0.458  Sum_probs=24.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      ..|..++++|++|+||||+|..++..+-.
T Consensus        32 ~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          32 RIHHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            44677889999999999999999888754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.0031  Score=53.78  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=44.3

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hh---hhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TF---NIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~---~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|+||||.-.... +.   ..  ....++.+++|.|............   .+   ...-.+..+|.||.|....
T Consensus        53 ~~~~l~i~Dt~G~e~~~~-~~---~~--~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~  126 (194)
T d2bcgy1          53 KTVKLQIWDTAGQERFRT-IT---SS--YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK  126 (194)
T ss_dssp             EEEEEEEECCTTTTTTTC-CC---GG--GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             EEEEEEEEECCCchhhHH-HH---HH--HhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccc
Confidence            457889999999643211 00   01  1124578899999965533333221   12   2222345588899985532


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...........+.+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~  145 (194)
T d2bcgy1         127 RVVEYDVAKEFADANKMPF  145 (194)
T ss_dssp             CCSCHHHHHHHHHHTTCCE
T ss_pred             cchhHHHHhhhhhccCcce
Confidence                223344444555554

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0064  Score=50.53  Aligned_cols=83  Identities=19%  Similarity=0.123  Sum_probs=44.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.+.|++|..........      ....++.+++|.|..........      +......-.+..+|.||+|... 
T Consensus        50 ~~~~~~i~d~~g~~~~~~~~~~------~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  123 (173)
T d2a5ja1          50 KQIKLQIWDTAGQESFRSITRS------YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR  123 (173)
T ss_dssp             EEEEEEEECCTTGGGTSCCCHH------HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             eEEEEEeecccCccchhhHHHH------HhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhh
Confidence            3567899999997543211111      11235788999997554333222      1222212223457779999542 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+....+..+.|.
T Consensus       124 ~~~~~~~~~~~a~~~~~~~  142 (173)
T d2a5ja1         124 RDVKREEGEAFAREHGLIF  142 (173)
T ss_dssp             CCSCHHHHHHHHHHHTCEE
T ss_pred             hhhHHHHHHHHHHHcCCEE
Confidence               2234455556667665

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.51  E-value=0.00063  Score=57.04  Aligned_cols=31  Identities=42%  Similarity=0.614  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .|+++|++||||||++..||..|   |++  ++|+|
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L---g~~--~id~D   34 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL---GYE--FVDTD   34 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh---CCC--EEehh
Confidence            36678999999999999998777   544  66877

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0093  Score=49.33  Aligned_cols=83  Identities=14%  Similarity=0.033  Sum_probs=43.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH-------HhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT-------TFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~-------~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|++|...........      ...++.+++|.|.....+......       .....-.+.-+|.||.|...
T Consensus        51 ~~~~~~~~d~~g~~~~~~~~~~~------~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~  124 (171)
T d2erya1          51 RAARLDILDTAGQEEFGAMREQY------MRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH  124 (171)
T ss_dssp             EEEEEEEEECC----CCHHHHHH------HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT
T ss_pred             ccccccccccccccccccccccc------ccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh
Confidence            35788999999976543221111      112488899999865533322221       11122223347889999643


Q ss_pred             c----hhHHHHHHHHhCCCe
Q 015657          169 R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi  184 (403)
                      .    ...+....+..++|.
T Consensus       125 ~~~v~~~~~~~~~~~~~~~~  144 (171)
T d2erya1         125 QRQVTQEEGQQLARQLKVTY  144 (171)
T ss_dssp             SCSSCHHHHHHHHHHTTCEE
T ss_pred             hccchHHHHHHHHHHcCCEE
Confidence            2    234556666777665

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.46  E-value=0.0014  Score=59.11  Aligned_cols=46  Identities=11%  Similarity=0.317  Sum_probs=30.3

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +++|.-.+..+++++|+.||||||+...|+..+.-..=.|.+-+.|
T Consensus        36 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~   81 (255)
T d2hyda1          36 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN   81 (255)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred             ceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEE
Confidence            4455555667899999999999999977765444322245443333

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.44  E-value=0.0036  Score=51.58  Aligned_cols=67  Identities=13%  Similarity=0.096  Sum_probs=36.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHHHHHhh----hcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFN----IEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~~~~~~----~~~~i~GvIlNk~D~~~  168 (403)
                      .++.+.++|+||......    ....  ....++.+++|+|.....   .+......+.    ..-.+.-+|.||.|...
T Consensus        45 ~~~~~~i~D~~G~~~~~~----~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~  118 (164)
T d1zd9a1          45 GNVTIKLWDIGGQPRFRS----MWER--YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG  118 (164)
T ss_dssp             TTEEEEEEEECCSHHHHT----THHH--HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             eeEEEEEeeccccccccc----cccc--cccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccch
Confidence            467889999999643211    1111  123468899999985432   2222222221    11123448889999653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.43  E-value=0.00083  Score=56.36  Aligned_cols=22  Identities=36%  Similarity=0.598  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L   39 (403)
                      |+|.|++||||||+|..||..|
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7789999999999999998877

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.42  E-value=0.00092  Score=58.02  Aligned_cols=40  Identities=33%  Similarity=0.480  Sum_probs=30.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      +-+|+|.|++||||||.|..||..|   |... +-.+|.+|..+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~l---g~~~-istGdl~R~~a   42 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDF---GFTY-LDTGAMYRAAT   42 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH---CCEE-EEHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh---CCcE-ECHHHHHHHHH
Confidence            4467889999999999999999887   4443 56677776544

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00089  Score=57.78  Aligned_cols=38  Identities=37%  Similarity=0.503  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      ||+|.|++||||||.|..||..|   |..- +-.+|.+|..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~---gl~~-iStGdLlR~~a   42 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL---QWHL-LDSGAIYRVLA   42 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH---TCEE-EEHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---CCcE-ECHHHHHHHHH
Confidence            89999999999999999999777   3333 55677666443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0092  Score=49.71  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHH---HHHHHHhhh----cCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI----EIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~---~~~~~~~~~----~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|+||||...... +..   .  ....++.+++|+|.......   ......+..    ...+..++.||.|...
T Consensus        54 ~~~~~~i~Dt~G~~~~~~-~~~---~--~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~  127 (177)
T d1x3sa1          54 NKAKLAIWDTAGQERFRT-LTP---S--YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN  127 (177)
T ss_dssp             EEEEEEEEEECSSGGGCC-SHH---H--HHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred             cccEEEEEECCCchhhHH-HHH---H--HHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc
Confidence            467899999999643211 111   1  12245888999997544332   222222221    1234558889998654


Q ss_pred             ch---hHHHHHHHHhCCCe
Q 015657          169 RG---GAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~~---~~~~~~~~~~g~pi  184 (403)
                      +.   ..+.......+.++
T Consensus       128 ~~v~~~~~~~~~~~~~~~~  146 (177)
T d1x3sa1         128 REVDRNEGLKFARKHSMLF  146 (177)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             ccccHHHHHHHHHHCCCEE
Confidence            32   33455666667665

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.35  E-value=0.0011  Score=56.10  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L   39 (403)
                      |++.|++||||||+|..||..|
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6788999999999999999877

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0067  Score=55.32  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=27.0

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      +++|.-.+..+++|+|+.||||||+...|+..+.
T Consensus        54 ~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          54 NINLNIEKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            4455555668899999999999999988876554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0045  Score=55.56  Aligned_cols=72  Identities=26%  Similarity=0.431  Sum_probs=45.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..|+-+++.|++|+|||+++.++|..+   +.++..+++.        .+.  ..          ........++..+..
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~---~~~~~~i~~~--------~l~--~~----------~~g~~~~~l~~~f~~   92 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP--------EIM--SK----------LAGESESNLRKAFEE   92 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHT---TCEEEEECHH--------HHT--TS----------CTTHHHHHHHHHHHH
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHh---CCeEEEEEch--------hhc--cc----------ccccHHHHHHHHHHH
Confidence            357789999999999999998887654   6677766643        110  00          000123344555666


Q ss_pred             HHhCCCcEEEEeCCC
Q 015657           93 AKKKNVDVVIVDTAG  107 (403)
Q Consensus        93 ~~~~~~D~VIIDtpg  107 (403)
                      +......+++||-.-
T Consensus        93 A~~~~p~il~iDeid  107 (258)
T d1e32a2          93 AEKNAPAIIFIDELD  107 (258)
T ss_dssp             HHHTCSEEEEESSGG
T ss_pred             HHhcCCeEEEehhhh
Confidence            655667788888543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0046  Score=51.41  Aligned_cols=83  Identities=20%  Similarity=0.084  Sum_probs=44.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---H---hhhcCCeeEEEEccCCCCCc
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---T---FNIEIGITGAILTKLDGDSR  169 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~---~~~~~~i~GvIlNk~D~~~~  169 (403)
                      ..+.+.|.||||......     +... ....++.+++|.|............   .   ....-.+.-+|.||+|....
T Consensus        52 ~~~~~~i~D~~G~~~~~~-----~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~  125 (174)
T d2bmea1          52 KYVKLQIWDTAGQERFRS-----VTRS-YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD  125 (174)
T ss_dssp             EEEEEEEEEECCSGGGHH-----HHHT-TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             cceeEEEEECCCchhhhh-----hHHH-HhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccch
Confidence            356788999999643211     1111 1224578899999865544433221   1   11122344588999995432


Q ss_pred             ----hhHHHHHHHHhCCCe
Q 015657          170 ----GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi  184 (403)
                          ...+.......+.|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~  144 (174)
T d2bmea1         126 REVTFLEASRFAQENELMF  144 (174)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             hchhhhHHHHHHHhCCCEE
Confidence                233344555566655

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.32  E-value=0.0093  Score=47.94  Aligned_cols=67  Identities=19%  Similarity=0.199  Sum_probs=36.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccH---HHHHHHHHHh----hhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTF----NIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g---~~~~~~~~~~----~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|++|.......      ........+.++++.|....   ..+......+    .....+..++.||.|...
T Consensus        42 ~~~~~~~~d~~g~~~~~~~------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~  115 (160)
T d1r8sa_          42 KNISFTVWDVGGQDKIRPL------WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN  115 (160)
T ss_dssp             SSCEEEEEECCCCGGGHHH------HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             eeEEEEEecCCCcccchhh------hhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccc
Confidence            5688999999997543221      11122334778888887433   2222222221    112234558889998653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.30  E-value=0.0093  Score=47.46  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=26.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      .-++.+++++.|+|||+++..   ++...|++|+++.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~---~~~~~~~~vli~~   40 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLN   40 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHH---HHHTTTCCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHH---HHHHcCCcEEEEc
Confidence            447788999999999987643   4467799998776

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0045  Score=55.57  Aligned_cols=42  Identities=36%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML   48 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll   48 (403)
                      +++|.=.+..+++++|+.||||||+...|+..+.-..=+|.+
T Consensus        32 ~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i   73 (251)
T d1jj7a_          32 GLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL   73 (251)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEE
Confidence            455555667889999999999999998887655432224543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.02  Score=47.09  Aligned_cols=82  Identities=15%  Similarity=-0.005  Sum_probs=47.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------H-hhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------T-FNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~-~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+-|.|++|.....  ..   ....  ..++.+++|.|.....+......      . ....-.+.-+|.||+|...
T Consensus        48 ~~~~l~i~D~~g~~~~~--~~---~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  120 (168)
T d2atva1          48 EVVSMEILDTAGQEDTI--QR---EGHM--RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH  120 (168)
T ss_dssp             EEEEEEEEECCCCCCCH--HH---HHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred             cceEEEEeecccccccc--cc---hhhh--cccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhh
Confidence            35789999999975431  11   1111  13588999999865544333221      1 1112234558899999642


Q ss_pred             ----chhHHHHHHHHhCCCe
Q 015657          169 ----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ----~~~~~~~~~~~~g~pi  184 (403)
                          ....+.......+.+.
T Consensus       121 ~r~V~~~e~~~~a~~~~~~~  140 (168)
T d2atva1         121 SRQVSTEEGEKLATELACAF  140 (168)
T ss_dssp             GCCSCHHHHHHHHHHHTSEE
T ss_pred             hccCcHHHHHHHHHHhCCeE
Confidence                2344556666777654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.27  E-value=0.018  Score=47.54  Aligned_cols=83  Identities=19%  Similarity=0.095  Sum_probs=44.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHh---hhcCC-eeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTF---NIEIG-ITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~---~~~~~-i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|++|..... .+..   ...+  .++.+++|.|...........   ..+   ...-+ +..+|.||.|...
T Consensus        50 ~~~~l~i~d~~g~~~~~-~~~~---~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~  123 (168)
T d1u8za_          50 EEVQIDILDTAGQEDYA-AIRD---NYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  123 (168)
T ss_dssp             EEEEEEEEECCC---CH-HHHH---HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred             ccccccccccccccchh-hhhh---hccc--ccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc
Confidence            45788999999976432 1111   1111  248889999986544333322   122   11122 2447889999532


Q ss_pred             ----chhHHHHHHHHhCCCe
Q 015657          169 ----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ----~~~~~~~~~~~~g~pi  184 (403)
                          ....+.......+++.
T Consensus       124 ~~~v~~~~~~~~~~~~~~~~  143 (168)
T d1u8za_         124 KRQVSVEEAKNRADQWNVNY  143 (168)
T ss_dssp             GCCSCHHHHHHHHHHHTCEE
T ss_pred             cccccHHHHHHHHHHcCCeE
Confidence                2344556666777665

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.019  Score=47.21  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=44.5

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH------hhhcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT------FNIEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~------~~~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+-|.||||.-..     ..+... ....++.+++|.|.....+.......      ......+.-+|.||.|...+ 
T Consensus        55 ~~~l~i~Dt~G~e~~-----~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~  128 (170)
T d2g6ba1          55 KVKLQMWDTAGQERF-----RSVTHA-YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER  128 (170)
T ss_dssp             EEEEEEEECCCC-------------C-CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred             EEEEEEEECCCchhh-----HHHHHH-hhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcc
Confidence            467889999996432     111111 12245888999998655433332221      11222344467799986543 


Q ss_pred             ---hhHHHHHHHHhCCCeE
Q 015657          170 ---GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi~  185 (403)
                         ...+.......+.|+.
T Consensus       129 ~v~~~~~~~~~~~~~~~~~  147 (170)
T d2g6ba1         129 VVKREDGEKLAKEYGLPFM  147 (170)
T ss_dssp             CSCHHHHHHHHHHHTCCEE
T ss_pred             cccHHHHHHHHHHcCCEEE
Confidence               2344556667777763

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.26  E-value=0.01  Score=46.47  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=27.6

Q ss_pred             CEEEEEEcCCCCcHHHHHH-HHHHHHHhCCCcEEEEe
Q 015657           15 PTVILLAGLQGVGKTTVSA-KLANYLKKQGKSCMLVA   50 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~-~LA~~L~~~G~kVllVd   50 (403)
                      .+.+++++++|+|||+.+. .+...+.+.+.+++++.
T Consensus         7 ~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            3556888899999997775 45566677788888777

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.016  Score=47.55  Aligned_cols=83  Identities=20%  Similarity=0.097  Sum_probs=45.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH------hhhcCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT------FNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~------~~~~~~i~GvIlNk~D~~~-  168 (403)
                      ..+.+.+.|++|......     +. -...-.++.+++|.|.....+.......      ......+.-+|.||.|... 
T Consensus        50 ~~~~~~~~d~~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~  123 (167)
T d1z08a1          50 KRVNLAIWDTAGQERFHA-----LG-PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE  123 (167)
T ss_dssp             CEEEEEEEECCCC-------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred             ccceeeeeccCCcceecc-----cc-hhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccc
Confidence            357889999999753210     00 0012235889999999766544333221      1222334446789999542 


Q ss_pred             ---chhHHHHHHHHhCCCe
Q 015657          169 ---RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ---~~~~~~~~~~~~g~pi  184 (403)
                         ....+....+..+.|.
T Consensus       124 ~~v~~~e~~~~a~~~~~~~  142 (167)
T d1z08a1         124 RHVSIQEAESYAESVGAKH  142 (167)
T ss_dssp             CCSCHHHHHHHHHHTTCEE
T ss_pred             cccchHHHHHHHHHcCCeE
Confidence               2344556666777765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0021  Score=57.12  Aligned_cols=46  Identities=13%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +++|+-.+..++++.|+.||||||+...++..+.-..-.|.+-.-|
T Consensus        18 ~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~   63 (232)
T d2awna2          18 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR   63 (232)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSC
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            3445445668899999999999999988775544322245433333

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.014  Score=48.18  Aligned_cols=19  Identities=32%  Similarity=0.641  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...|.
T Consensus         5 i~~vG~~~vGKSsLi~~~~   23 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYV   23 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7889999999999997665

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.0013  Score=55.44  Aligned_cols=22  Identities=50%  Similarity=0.667  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L   39 (403)
                      |++.|++||||||+|..||..|
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6788999999999999999887

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.011  Score=49.11  Aligned_cols=83  Identities=8%  Similarity=-0.029  Sum_probs=44.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hhh-----hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TFN-----IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~~-----~~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.++|+++...... .+   . ....-..+.+++|.|.....+......   ...     ..++ .-+|.||+|..
T Consensus        51 ~~~~~~~~d~~~~~g~e~-~~---~-~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~  124 (172)
T d2g3ya1          51 ESATIILLDMWENKGENE-WL---H-DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLV  124 (172)
T ss_dssp             EEEEEEEECCTTTTHHHH-HH---H-HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCG
T ss_pred             ceeeeeeecccccccccc-cc---c-cccccccceeeeeecccccchhhhhhhhhhhhhhccccCCce-EEEEecccccc
Confidence            467789999887543211 11   1 111224578899999865544333222   111     1222 34788999954


Q ss_pred             Cc----hhHHHHHHHHhCCCe
Q 015657          168 SR----GGAALSVKEVSGKPI  184 (403)
Q Consensus       168 ~~----~~~~~~~~~~~g~pi  184 (403)
                      ..    ...+.......++|.
T Consensus       125 ~~~~v~~~~~~~~a~~~~~~~  145 (172)
T d2g3ya1         125 RCREVSVSEGRACAVVFDCKF  145 (172)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEE
T ss_pred             ccccccHHHHHHHHHHcCCeE
Confidence            22    233455666677664

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.018  Score=47.27  Aligned_cols=82  Identities=13%  Similarity=0.020  Sum_probs=44.8

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH------HhhhcCCeeEEEEccCCCCC--
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT------TFNIEIGITGAILTKLDGDS--  168 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~------~~~~~~~i~GvIlNk~D~~~--  168 (403)
                      .+.+.|.|++|...... +..   .  ....++.+++|.|....+.......      .....-.+.-+|.||.|...  
T Consensus        52 ~~~~~i~d~~g~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  125 (167)
T d1z0ja1          52 LHKFLIWDTAGLERFRA-LAP---M--YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR  125 (167)
T ss_dssp             EEEEEEEEECCSGGGGG-GTH---H--HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred             ccceeeeecCCchhhhH-HHH---H--HHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcccc
Confidence            45677899998654211 111   1  1223588899999865544333221      11222234458889999642  


Q ss_pred             --chhHHHHHHHHhCCCe
Q 015657          169 --RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 --~~~~~~~~~~~~g~pi  184 (403)
                        ....+.......+++.
T Consensus       126 ~v~~~~~~~~~~~~~~~~  143 (167)
T d1z0ja1         126 EVMERDAKDYADSIHAIF  143 (167)
T ss_dssp             CSCHHHHHHHHHHTTCEE
T ss_pred             chhHHHHHHHHHHcCCEE
Confidence              2234455666667654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.20  E-value=0.013  Score=52.90  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=23.7

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ....++|.|+|.||+||||+|.++....
T Consensus        41 ~~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          41 DLDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             TSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            3456899999999999999999887654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.18  E-value=0.0028  Score=56.16  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      ++.++|++|+||||++..++..|.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHh
Confidence            4566799999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.18  E-value=0.0013  Score=56.30  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      ..+ |++.|+|||||||++..||..|
T Consensus         6 ~mr-IiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLR-AAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCE-EEEECCTTSSHHHHHHHHHHHB
T ss_pred             cee-EEEECCCCCCHHHHHHHHHHHH
Confidence            345 5567999999999998888654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.011  Score=48.66  Aligned_cols=83  Identities=19%  Similarity=0.074  Sum_probs=48.0

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH------hhhcCCeeEEEEccCCCCC-
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT------FNIEIGITGAILTKLDGDS-  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~------~~~~~~i~GvIlNk~D~~~-  168 (403)
                      ..+++.|.|++|...... +..   .  ..-.++.+++|.|.............      ........-+|.||.|... 
T Consensus        50 ~~~~l~i~d~~g~~~~~~-~~~---~--~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~  123 (170)
T d1ek0a_          50 HTVKFEIWDTAGQERFAS-LAP---M--YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE  123 (170)
T ss_dssp             EEEEEEEEEECCSGGGGG-GHH---H--HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred             ccccccccccCCchhHHH-HHH---H--HHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccc
Confidence            457899999999754321 111   1  12245888999998665444333221      1223345558889998421 


Q ss_pred             ------chhHHHHHHHHhCCCe
Q 015657          169 ------RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ------~~~~~~~~~~~~g~pi  184 (403)
                            ....+....+..+.|.
T Consensus       124 ~~~~~v~~~~~~~~~~~~~~~~  145 (170)
T d1ek0a_         124 GGERKVAREEGEKLAEEKGLLF  145 (170)
T ss_dssp             SCCCCSCHHHHHHHHHHHTCEE
T ss_pred             cchhhhhHHHHHHHHHHcCCEE
Confidence                  1234556666777766

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.014  Score=50.72  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=32.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~~   54 (403)
                      +.+++.|+|.+|+|||+++.++++.....      +..|..++.+..
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT   82 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHH
Confidence            34899999999999999999999866532      346777777654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0043  Score=51.65  Aligned_cols=66  Identities=12%  Similarity=0.115  Sum_probs=36.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHH---HHHHH---HHHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAAL---VTTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~---~~~~~---~~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|.||+|...... +.   .  .....++.+++|.|.....   .+...   .....+.++ .-+|.||.|...
T Consensus        50 ~~~~l~i~D~~g~~~~~~-~~---~--~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~  121 (170)
T d1i2ma_          50 GPIKFNVWDTAGQEKFGG-LR---D--GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD  121 (170)
T ss_dssp             CCEEEEEEECTTHHHHSS-CG---G--GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCC-EEEEEECCCCSC
T ss_pred             ccccccccccccccccce-ec---c--hhcccccchhhccccccccccchhHHHHHHHhhccCCCc-eeeecchhhhhh
Confidence            467899999999643211 00   0  0112458899999985432   22222   222233343 348889999653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.019  Score=47.18  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=19.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ...-|+++|.++|||||+..+|.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            34558899999999999997775

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.10  E-value=0.012  Score=48.36  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      +-.-|+++|.+||||||+...|.
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFS   36 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            33457899999999999997775

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0075  Score=54.33  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=46.3

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      ..++-|+++|++|+|||+++..+|..+   |.++..+++.        .+.  .          .........++..+..
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~~--------~l~--~----------~~~~~~~~~l~~~f~~   95 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP--------ELL--T----------MWFGESEANVREIFDK   95 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECHH--------HHH--T----------SCTTTHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEHH--------Hhh--h----------ccccchHHHHHHHHHH
Confidence            346789999999999999999998776   5666555532        111  1          0111234556666777


Q ss_pred             HHhCCCcEEEEeCC
Q 015657           93 AKKKNVDVVIVDTA  106 (403)
Q Consensus        93 ~~~~~~D~VIIDtp  106 (403)
                      +.....-+++||-.
T Consensus        96 A~~~~p~il~idei  109 (265)
T d1r7ra3          96 ARQAAPCVLFFDEL  109 (265)
T ss_dssp             HHHTCSEEEEESSG
T ss_pred             HHhcCCcceeHHhh
Confidence            66566678888754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0017  Score=54.56  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L   39 (403)
                      |++.|++||||||.|..||..+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6778999999999999998766

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0028  Score=50.43  Aligned_cols=43  Identities=14%  Similarity=0.145  Sum_probs=37.0

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-C-CCcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK-Q-GKSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~-G~kVllVd~D~~   54 (403)
                      +++..+|+++|..|+||+|+|.+|...|.+ . |++|.+.|.|..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni   47 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK   47 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence            346688999999999999999999988877 4 699999998844

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.011  Score=49.01  Aligned_cols=83  Identities=16%  Similarity=0.020  Sum_probs=45.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hh---hhcCC-eeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TF---NIEIG-ITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~---~~~~~-i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|++|.........    ...  -.++.+++|.|.....+......   .+   ...-. +.-+|.||.|...
T Consensus        52 ~~~~l~~~d~~g~~~~~~~~~----~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          52 IPARLDILDTAGQEEFGAMRE----QYM--RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES  125 (173)
T ss_dssp             EEEEEEEEECCCTTTTSCCHH----HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred             eeeeeeccccccccccccccc----hhh--ccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh
Confidence            457889999999764322111    111  12488899999866544433221   11   11122 3347889999542


Q ss_pred             c----hhHHHHHHHHhCCCe
Q 015657          169 R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi  184 (403)
                      .    ...+.......+.|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~  145 (173)
T d2fn4a1         126 QRQVPRSEASAFGASHHVAY  145 (173)
T ss_dssp             GCCSCHHHHHHHHHHTTCEE
T ss_pred             ccccchhhhhHHHHhcCCEE
Confidence            1    234455566666654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.03  E-value=0.0019  Score=57.80  Aligned_cols=42  Identities=21%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEE
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML   48 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVll   48 (403)
                      +++|.=.+..+++++|+.||||||+...|+..+.-..=.|.+
T Consensus        20 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i   61 (242)
T d1mv5a_          20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI   61 (242)
T ss_dssp             EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEE
Confidence            455555677899999999999999998888666532224543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.019  Score=47.40  Aligned_cols=84  Identities=11%  Similarity=0.024  Sum_probs=47.8

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH------HHHhhhcCC-eeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIG-ITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~------~~~~~~~~~-i~GvIlNk~D~~~  168 (403)
                      ..+.+-|.|++|....... ..   ...  -.++.+++|.|.....+....      +........ +.-+|.||.|...
T Consensus        50 ~~~~~~i~d~~g~~~~~~~-~~---~~~--~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~  123 (169)
T d1x1ra1          50 QWAILDVLDTAGQEEFSAM-RE---QYM--RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH  123 (169)
T ss_dssp             EEEEEEEEECCSCGGGCSS-HH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred             ccccccccccccccccccc-hh---hhh--hhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhh
Confidence            4577889999997643221 11   111  124888999998655433332      111111222 2347789999543


Q ss_pred             c----hhHHHHHHHHhCCCeE
Q 015657          169 R----GGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi~  185 (403)
                      .    ...+.......+.+..
T Consensus       124 ~~~v~~e~~~~~~~~~~~~~~  144 (169)
T d1x1ra1         124 LRKVTRDQGKEMATKYNIPYI  144 (169)
T ss_dssp             TCCSCHHHHHHHHHHHTCCEE
T ss_pred             hceeehhhHHHHHHHcCCEEE
Confidence            2    2456677778888763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0031  Score=55.64  Aligned_cols=40  Identities=28%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR   55 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~r   55 (403)
                      ..++.++++|++|+||||++..||..+   +..+..+.+...+
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~---~~~~~~~~~~~~~   89 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVR   89 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH---Hhhhhccccccch
Confidence            345678999999999999998888654   6677777765444

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.01  E-value=0.002  Score=55.96  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGK   44 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~   44 (403)
                      +..+++|+|.+|+||||++.++|..++..|+
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~   63 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEF   63 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGG
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            3589999999999999999999998876543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.01  E-value=0.001  Score=56.67  Aligned_cols=28  Identities=32%  Similarity=0.535  Sum_probs=23.8

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      .++|.+|+|.|.-||||||++..|+..|
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999997776544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.0018  Score=56.84  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=24.8

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      +.-++++|++|+||||+|..||..+   +.....+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~---~~~~~~~~   67 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTS   67 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhcc---CCCccccc
Confidence            4457899999999999998888765   44444443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0019  Score=54.40  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L   39 (403)
                      |+|.|++||||||+|..||..|
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5567999999999999998776

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.031  Score=45.65  Aligned_cols=83  Identities=19%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH---h---hhcCCe-eEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT---F---NIEIGI-TGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~---~---~~~~~i-~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|++|.........    ..  ...++.+++|.|.............   .   ....++ .-+|.||+|...
T Consensus        49 ~~~~l~~~d~~g~~~~~~~~~----~~--~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  122 (167)
T d1kaoa_          49 SPSVLEILDTAGTEQFASMRD----LY--IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES  122 (167)
T ss_dssp             EEEEEEEEECCCTTCCHHHHH----HH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred             ceEeeccccCCCccccccchH----HH--hhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh
Confidence            356788899999654321111    11  1124788999998765544443321   1   111222 347889999532


Q ss_pred             ----chhHHHHHHHHhCCCe
Q 015657          169 ----RGGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ----~~~~~~~~~~~~g~pi  184 (403)
                          ....+.......+.|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~  142 (167)
T d1kaoa_         123 EREVSSSEGRALAEEWGCPF  142 (167)
T ss_dssp             GCCSCHHHHHHHHHHHTSCE
T ss_pred             cccchHHHHHHHHHHcCCeE
Confidence                2234455666677776

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0076  Score=50.19  Aligned_cols=68  Identities=18%  Similarity=0.152  Sum_probs=38.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH-------HHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+-|.|++|.-......    ..  ..-.++.+++|.|.....+..+..       ....+.+++ -+|.||.|...
T Consensus        48 ~~~~l~i~D~~g~~~~~~~~----~~--~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~pi-ilvgnK~Dl~~  120 (177)
T d1kmqa_          48 KQVELALWDTAGLEDYDRLR----PL--SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRN  120 (177)
T ss_dssp             EEEEEEEEEECCSGGGTTTG----GG--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCE-EEEEECGGGTT
T ss_pred             cceeeeccccCccchhcccc----hh--hcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCce-EEeeecccccc
Confidence            45789999999975331110    00  112458889999987654443322       122233333 36779999754


Q ss_pred             ch
Q 015657          169 RG  170 (403)
Q Consensus       169 ~~  170 (403)
                      ..
T Consensus       121 ~~  122 (177)
T d1kmqa_         121 DE  122 (177)
T ss_dssp             CH
T ss_pred             hh
Confidence            43

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.029  Score=46.75  Aligned_cols=83  Identities=20%  Similarity=0.139  Sum_probs=46.4

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHHh---hh----cCCeeEEEEccCCCCCc
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTF---NI----EIGITGAILTKLDGDSR  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~~---~~----~~~i~GvIlNk~D~~~~  169 (403)
                      .+.+.+.||+|.-..     ..+... ..-.++.+++|.|.............+   ..    ...+.-+|.||.|....
T Consensus        63 ~~~~~i~dt~G~e~~-----~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~  136 (186)
T d2f7sa1          63 KVHLQLWDTAGQERF-----RSLTTA-FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ  136 (186)
T ss_dssp             EEEEEEEEEESHHHH-----HHHHHH-HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             eEEeccccCCcchhh-----HHHHHH-HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhh
Confidence            456889999985321     111111 122468999999986654443333221   11    11234578899996432


Q ss_pred             ----hhHHHHHHHHhCCCeE
Q 015657          170 ----GGAALSVKEVSGKPIK  185 (403)
Q Consensus       170 ----~~~~~~~~~~~g~pi~  185 (403)
                          ...+....+..++|+.
T Consensus       137 ~~v~~~e~~~~~~~~~~~~~  156 (186)
T d2f7sa1         137 REVNERQARELADKYGIPYF  156 (186)
T ss_dssp             CCSCHHHHHHHHHHTTCCEE
T ss_pred             hcchHHHHHHHHHHcCCEEE
Confidence                2334556667787763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.017  Score=47.65  Aligned_cols=82  Identities=16%  Similarity=0.050  Sum_probs=43.9

Q ss_pred             CCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH---Hhh---hcCCeeEEEEccCCCCCc-
Q 015657           97 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT---TFN---IEIGITGAILTKLDGDSR-  169 (403)
Q Consensus        97 ~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~---~~~---~~~~i~GvIlNk~D~~~~-  169 (403)
                      .+.+.+.|++|.-.... +.   ...  ...++.+++|.|............   .+.   ..-.+.-+|.||.|.... 
T Consensus        54 ~~~~~~~d~~g~~~~~~-~~---~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  127 (170)
T d1r2qa_          54 TVKFEIWDTAGQERYHS-LA---PMY--YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR  127 (170)
T ss_dssp             EEEEEEEEECCSGGGGG-GH---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEEEEeccCCCchhhhh-hH---HHH--hhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccc
Confidence            56789999999754211 11   111  124588899999865543332221   111   111234477899995422 


Q ss_pred             ---hhHHHHHHHHhCCCe
Q 015657          170 ---GGAALSVKEVSGKPI  184 (403)
Q Consensus       170 ---~~~~~~~~~~~g~pi  184 (403)
                         ...+.......+.|.
T Consensus       128 ~v~~e~~~~~~~~~~~~~  145 (170)
T d1r2qa_         128 AVDFQEAQSYADDNSLLF  145 (170)
T ss_dssp             CSCHHHHHHHHHHTTCEE
T ss_pred             cccHHHHHHHHHhcCCEE
Confidence               234455555666554

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.024  Score=46.45  Aligned_cols=83  Identities=16%  Similarity=0.067  Sum_probs=45.6

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH------HHhhhcCC-eeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------TTFNIEIG-ITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~------~~~~~~~~-i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|+++........    ....  ..++.+++|.|...........      ......-+ +.-+|.||.|...
T Consensus        49 ~~~~l~~~d~~~~~~~~~~~----~~~~--~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  122 (166)
T d1ctqa_          49 ETCLLDILDTAGQEEYSAMR----DQYM--RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA  122 (166)
T ss_dssp             EEEEEEEEEECCCGGGHHHH----HHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC
T ss_pred             eeeeeeeeeccCccccccch----hhhh--hcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc
Confidence            35678888999876532111    1111  1247888998886543332221      11111112 3458899999653


Q ss_pred             c---hhHHHHHHHHhCCCe
Q 015657          169 R---GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~---~~~~~~~~~~~g~pi  184 (403)
                      +   ...+.......+.|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~  141 (166)
T d1ctqa_         123 RTVESRQAQDLARSYGIPY  141 (166)
T ss_dssp             CCSCHHHHHHHHHHHTCCE
T ss_pred             ccccHHHHHHHHHHhCCeE
Confidence            2   344556667777776

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.89  E-value=0.0031  Score=55.23  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhC------CCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~------G~kVllVd~D~~   54 (403)
                      ..+++.|+|.+|+||||++.++|...+..      +-+++.+++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT   81 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccch
Confidence            34899999999999999999999888743      567777777643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.80  E-value=0.012  Score=51.90  Aligned_cols=47  Identities=15%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh-CCCcEEEEeccCC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY   54 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~-~G~kVllVd~D~~   54 (403)
                      +++|+=.+.-+++++|++||||||+...++..+.- .| .|.+-+-|+.
T Consensus        23 ~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG-~I~~~g~~i~   70 (230)
T d1l2ta_          23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTN   70 (230)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECT
T ss_pred             ceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcc-eeEECCEEcC
Confidence            34555556678999999999999998777654432 23 4544444443

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0021  Score=56.51  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=26.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      +|+.|+|-|.-||||||++..|+.+|...+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence            589999999999999999999998886543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.0029  Score=55.58  Aligned_cols=34  Identities=32%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      .+.-++++|++|+||||+|..+|..+   +.....++
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~---~~~~~~~~   67 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTS   67 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh---CCCeEecc
Confidence            34557899999999999998887655   44544444

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.70  E-value=0.0027  Score=58.73  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=28.5

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +|+.++++||+|||||.+|..||..+.   .+...+++-
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~---~~~~~i~~s   83 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEAT   83 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc---cchhccccc
Confidence            678889999999999999999998763   445555543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0021  Score=54.18  Aligned_cols=30  Identities=20%  Similarity=0.118  Sum_probs=26.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      +.+++.|+|++|+||||++.++|...+..+
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~~~~   51 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQLPI   51 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            357899999999999999999998877553

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0057  Score=51.58  Aligned_cols=66  Identities=15%  Similarity=0.080  Sum_probs=37.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH-------HhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT-------TFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~-------~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+-|.|++|.-.......      .....++.+++|.|....++..+...       ....... .-+|.||+|...
T Consensus        55 ~~~~l~i~D~~g~e~~~~~~~------~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~  127 (185)
T d2atxa1          55 KQYLLGLYDTAGQEDYDRLRP------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD  127 (185)
T ss_dssp             CEEEEEEECCCCSSSSTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred             ceEEeecccccccchhhhhhh------hcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCC-eeEeeecccccc
Confidence            357788999999754311110      11123588899999876554433321       2222333 337889999654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.02  Score=51.64  Aligned_cols=30  Identities=37%  Similarity=0.490  Sum_probs=25.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      .....-++++|.+|+|||+++..||..+..
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            344455789999999999999999998876

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.66  E-value=0.03  Score=53.34  Aligned_cols=114  Identities=20%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC--CCCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--GTEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~--~~~~~~~~~~~~~l   90 (403)
                      .+.-+|+|+|+.||||||+...+..++.+.+++++-|. ||.-..          ..++.-...  ....+    ...++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dPiE~~----------~~~~~q~~v~~~~~~~----~~~~l  220 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIEFD----------IDGIGQTQVNPRVDMT----FARGL  220 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCCSC----------CSSSEEEECBGGGTBC----HHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cCcccc----------cCCCCeeeecCCcCCC----HHHHH
Confidence            45578999999999999999999998876677776555 432110          011111111  11112    34455


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV  147 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~  147 (403)
                      ..+.+.+.|+|+|.=-...    ..+.  ..+..+..-.-|+--+.+.....+...+
T Consensus       221 ~~~lR~dPDvi~igEiRd~----~ta~--~a~~aa~tGhlV~tTlHa~~a~~~~~Rl  271 (401)
T d1p9ra_         221 RAILRQDPDVVMVGEIRDL----ETAQ--IAVQASLTGHLVMSTLHTNTAVGAVTRL  271 (401)
T ss_dssp             HHHGGGCCSEEEESCCCSH----HHHH--HHHHHHHTTCEEEEEECCSSSHHHHHHH
T ss_pred             HHHHhhcCCEEEecCcCCh----HHHH--HHHHHHhcCCeEEEEeccCchHhhhhhh
Confidence            5555689999999655432    2222  1222222335666666775554444443

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.013  Score=54.04  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +..+++++|++|+|||.+|..||..|-..+.++.-+++--+
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            33578899999999999999999998654556655665444

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0081  Score=52.02  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQ   42 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~   42 (403)
                      ++++|++|+||||++..||..+...
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~~~   62 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIYGK   62 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCChhHHHHHHHHHhhcC
Confidence            6789999999999999999887644

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.54  E-value=0.01  Score=52.87  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=26.9

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      +++|+-.+.-++++.|++||||||+...|+..+.
T Consensus        23 ~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            4455545667899999999999999988886554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0029  Score=55.16  Aligned_cols=31  Identities=35%  Similarity=0.451  Sum_probs=27.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      ++.+.|+|-|.-||||||.+..|+.+|..++
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence            3568899999999999999999999987654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.44  E-value=0.0034  Score=52.93  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      ++|+++|++||||||++..|...+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            6889999999999999987765543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.037  Score=45.60  Aligned_cols=19  Identities=32%  Similarity=0.632  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...+.
T Consensus         9 I~vvG~~~vGKSSli~~~~   27 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999997775

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.036  Score=47.60  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      .+.+||+|+|.-  ||||++..|+..|...|+++.++.
T Consensus         3 ~~~~vI~ITGT~--GKTTt~~~l~~iL~~~g~~~~~~g   38 (234)
T d1e8ca3           3 DNLRLVGVTGTN--GKTTTTQLLAQWSQLLGEISAVMG   38 (234)
T ss_dssp             GSSEEEEEESSS--CHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCeEEEEECCC--cHHHHHHHHHHHHHHCCCCeEEEC
Confidence            456899999875  899999999999999999998764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.004  Score=54.33  Aligned_cols=27  Identities=44%  Similarity=0.482  Sum_probs=23.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      ...++++|++|+||||++..+|..+..
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            344789999999999999999988764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.36  E-value=0.014  Score=51.56  Aligned_cols=47  Identities=21%  Similarity=0.286  Sum_probs=31.8

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      ++.|+-.+.-+++++|+.||||||+...|+-.+.-..=+|.+-.-|+
T Consensus        18 ~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i   64 (229)
T d3d31a2          18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV   64 (229)
T ss_dssp             EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEec
Confidence            34555556678999999999999999888855433222554433344

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.014  Score=51.94  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=30.9

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +++|.=.+..+++++|++||||||+...|+-.+.-..=.|.+-.-|+.
T Consensus        23 ~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~   70 (240)
T d3dhwc1          23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT   70 (240)
T ss_dssp             EEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEEC
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEee
Confidence            344544566889999999999999998777544322124444344433

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.34  E-value=0.011  Score=52.58  Aligned_cols=47  Identities=23%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +++|+-.+..++++.|+.||||||+...++..+.-..=+|.+-.-|+
T Consensus        24 ~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i   70 (239)
T d1v43a3          24 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV   70 (239)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             ceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceec
Confidence            34455556678999999999999999888866543212455444443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.32  E-value=0.0068  Score=53.45  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=19.1

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .++.+++|.+||||||+..+|.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHhhc
Confidence            3567899999999999998775

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=95.29  E-value=0.087  Score=48.61  Aligned_cols=115  Identities=23%  Similarity=0.239  Sum_probs=73.0

Q ss_pred             CCCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHh-hhccCCceEeCCCCCCHHHHHHHHH
Q 015657           13 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL-GEQVGVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        13 ~~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~-~~~~gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      .+.++++++|. --+||=|++..|...+.++|+++..+..-        |.-.+ +-..|+++-....... ...+..++
T Consensus       155 ~~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~a~fiaTG--------QTGili~g~~Gv~~Dav~~Dfv-aGavE~~v  225 (338)
T d2g0ta1         155 KKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG--------QTGILIGADAGYVIDAVPADFV-SGVVEKAV  225 (338)
T ss_dssp             CCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS--------HHHHHTTCSEECCGGGSBGGGH-HHHHHHHH
T ss_pred             cCCcEEEEeccCccccHHHHHHHHHHHHHhCCCCeeEEEcC--------CeeEeeccccceecCcchhhhh-HHHHHHHH
Confidence            35677888899 99999999999999999999999988865        22122 2223444322211111 11233333


Q ss_pred             HHHHhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEec
Q 015657           91 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA  137 (403)
Q Consensus        91 ~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda  137 (403)
                      -.+..++.|++||++-|.+....-... ...+..-..|+.++|+-++
T Consensus       226 ~~~~~~~~d~iiIEGQgSL~hP~~s~v-tl~LL~Gs~Pd~lVL~H~p  271 (338)
T d2g0ta1         226 LKLEKTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDP  271 (338)
T ss_dssp             HHHHHTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCT
T ss_pred             hhhhcCCCCEEEEcccccccccccccc-cHHHHhcCCCCEEEEeecC
Confidence            333345789999999998764321111 2345555678998888665

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.27  E-value=0.056  Score=46.19  Aligned_cols=40  Identities=25%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCC---CcEEEEec
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQG---KSCMLVAG   51 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G---~kVllVd~   51 (403)
                      ++.+.-++++|++|+||||+|..|+.++...-   -.+..+..
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~   54 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP   54 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence            44577899999999999999999999886532   13555554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.25  E-value=0.021  Score=50.67  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=25.5

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      ++|+-.+.-+++++|+.||||||+...|+..+.
T Consensus        22 vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             eeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            444444567899999999999999988875544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.14  E-value=0.013  Score=49.13  Aligned_cols=67  Identities=15%  Similarity=0.151  Sum_probs=38.4

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH-------hhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT-------FNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~-------~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+-|.|++|....+...    .  ...-..+.+++|.|.....+.......       ..... +.-+|-||.|...
T Consensus        48 ~~~~~~i~D~~g~~~~~~~~----~--~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~-~iilVgnK~Dl~~  120 (179)
T d1m7ba_          48 QRIELSLWDTSGSPYYDNVR----P--LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRT  120 (179)
T ss_dssp             CEEEEEEEEECCSGGGTTTG----G--GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTC-EEEEEEECGGGGG
T ss_pred             eEEeeccccccccccccccc----c--chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcc-eEEEEEecccccc
Confidence            45788899999965432110    0  112245888999998666544333221       12223 3347889999654


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       121 ~  121 (179)
T d1m7ba_         121 D  121 (179)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.13  E-value=0.044  Score=50.60  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=40.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .+++++|+||+|||.+|..||..+..+-..+.+-..|+..                     ...-.....+++.++.++.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~---------------------~~~G~~e~~~~~~f~~a~~  182 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS---------------------GYNTDFNVFVDDIARAMLQ  182 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST---------------------TCBCCHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh---------------------cccchHHHHHHHHHHHHhh
Confidence            4566689999999999999998876432122222222211                     0011234556777777753


Q ss_pred             CCCcEEEEeC
Q 015657           96 KNVDVVIVDT  105 (403)
Q Consensus        96 ~~~D~VIIDt  105 (403)
                        ..+++||=
T Consensus       183 --~~ilf~DE  190 (321)
T d1w44a_         183 --HRVIVIDS  190 (321)
T ss_dssp             --CSEEEEEC
T ss_pred             --ccEEEeeh
Confidence              45999994

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0051  Score=52.41  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      |+|+|++||||||++..|+..+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999988887664

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.012  Score=50.58  Aligned_cols=29  Identities=31%  Similarity=0.392  Sum_probs=24.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      ....-++++|.+|+|||+++..||..+..
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            33455789999999999999999998875

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.015  Score=53.65  Aligned_cols=39  Identities=33%  Similarity=0.445  Sum_probs=29.9

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      .+..+++++|++|||||.+|..||..+   +.+.+.+|+--+
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~~l---~~~~i~~d~s~~   88 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEY   88 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGC
T ss_pred             CCceEEEEECCCcchhHHHHHHHHhhc---cCCeeEeccccc
Confidence            344588999999999999999999887   445555665433

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.002  Score=56.36  Aligned_cols=30  Identities=23%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      +.+.|+|-|.-||||||++..|+.+|...+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~   30 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWE   30 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            368899999999999999999998875433

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.75  E-value=0.075  Score=48.99  Aligned_cols=113  Identities=14%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK   95 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd-~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~   95 (403)
                      .|+|+|.+||||||+...|+.++-. ..+++.|. ..-...         ....++.-+......+..+    ++..+.+
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~-~~rivtiEd~~El~l---------~~~~~~~~~~~~~~~~~~~----ll~~~lR  233 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF---------KHHKNYTQLFFGGNITSAD----CLKSCLR  233 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCCC---------SSCSSEEEEECBTTBCHHH----HHHHHTT
T ss_pred             CEEEEeeccccchHHHHHHhhhccc-ccceeeccchhhhhc---------ccccccceeccccchhHHH----HHHHHhc
Confidence            3789999999999999888866643 55666553 221110         0111222222222334433    3444445


Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHHH
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT  149 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~~  149 (403)
                      .+.|+|||.--.+..    ...-+..+.  ..-..++--+.+.+..++...+..
T Consensus       234 ~~pd~iivgEiR~~e----a~~~l~a~~--tGh~g~~tT~Ha~s~~~a~~Rl~~  281 (323)
T d1g6oa_         234 MRPDRIILGELRSSE----AYDFYNVLC--SGHKGTLTTLHAGSSEEAFIRLAN  281 (323)
T ss_dssp             SCCSEEEESCCCSTH----HHHHHHHHH--TTCSCEEEEECCSSHHHHHHHHHH
T ss_pred             cCCCcccCCccCchh----HHHHHHHHH--hcCCcEEEEECCCCHHHHHHHHHH
Confidence            789999998766432    111122211  111346777778777666665543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.73  E-value=0.022  Score=50.54  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=32.7

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +++|+-.+..++++.|+.|+||||+...|+-.+.-..=+|.+-.-|+
T Consensus        24 ~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i   70 (240)
T d1ji0a_          24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI   70 (240)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             eeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc
Confidence            44555556689999999999999999888866543322554444443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.71  E-value=0.0091  Score=51.78  Aligned_cols=38  Identities=21%  Similarity=0.199  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh---CCCcEEEEeccCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDVY   54 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~---~G~kVllVd~D~~   54 (403)
                      .++++|++|+||||++..++..+..   ......-+.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~   75 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE   75 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred             eEEEECCCCCChHHHHHHHHHHHcCCcccccchhheecccc
Confidence            3789999999999999999988753   2345555554433

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.71  E-value=0.014  Score=55.13  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=28.4

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      +.+.++++|+||+|||++|..||..+   |.+++-+.+
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~in~  187 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNL  187 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSS
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEEC
Confidence            45789999999999999999999877   556665543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.0069  Score=53.10  Aligned_cols=27  Identities=33%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCC
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQG   43 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G   43 (403)
                      .++++|++|+||||++..+|..+...+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l~~~~   61 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESIFGPG   61 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcCcc
Confidence            477999999999999999998875433

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.0065  Score=51.43  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .|+|+|++||||||++..|+..+.
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            378999999999999988865543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.0095  Score=51.62  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEEe
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVA   50 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G--~kVllVd   50 (403)
                      ++++|++|+||||+|..||..+.-..  ..+..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n   73 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN   73 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred             EEEECCCCCCchhhHHHHHHHHhcccccccccccc
Confidence            67899999999999999998887432  3444443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.014  Score=55.45  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      +-++|+|.+|||||++...+...+..+|..++++|.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            337899999999999999999988889999998874

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.57  E-value=0.08  Score=43.65  Aligned_cols=87  Identities=22%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCC----CCH----HHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE----VKP----SQIAK   87 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~----~~~----~~~~~   87 (403)
                      .+.+.+| .|=||||.|..+|...+-.|+||+++..=--+...-+..  ..+..++.+...+..    ..+    ...++
T Consensus         4 ~i~vytG-~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~   80 (157)
T d1g5ta_           4 IIIVFTG-NGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERN--LLEPHGVEFQVMATGFTWETQNREADTAACM   80 (157)
T ss_dssp             CEEEEES-SSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHH--HHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHhcCCCEEEEEEEecCCcccchhh--hhcccCcEEEEecCCCcccCCChHHHHHHHH
Confidence            4455555 588999999999999999999999998653322221111  112234444432221    111    12233


Q ss_pred             HHHHHH----HhCCCcEEEEeC
Q 015657           88 QGLEEA----KKKNVDVVIVDT  105 (403)
Q Consensus        88 ~~l~~~----~~~~~D~VIIDt  105 (403)
                      ++++.+    ....||+||+|=
T Consensus        81 ~~~~~a~~~~~~~~~dllILDE  102 (157)
T d1g5ta_          81 AVWQHGKRMLADPLLDMVVLDE  102 (157)
T ss_dssp             HHHHHHHHHTTCTTCSEEEEET
T ss_pred             HHHHHHHHHhhcCccCEEeHHH
Confidence            444433    356799999995

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.073  Score=46.76  Aligned_cols=91  Identities=18%  Similarity=0.135  Sum_probs=54.9

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      ....|...++.|-.|||||-++...+......|+.|+++..-.. .+..+..+...-...++.+..........+ -.+.
T Consensus        72 ~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~  150 (233)
T d2eyqa3          72 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKE-QTQI  150 (233)
T ss_dssp             HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHH-HHHH
T ss_pred             hccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchh-HHHH
Confidence            45567778999999999999999999999999999987773211 011122232222344555443333333322 2334


Q ss_pred             HHHHHhCCCcEEE
Q 015657           90 LEEAKKKNVDVVI  102 (403)
Q Consensus        90 l~~~~~~~~D~VI  102 (403)
                      +..+.....++||
T Consensus       151 ~~~~~~g~~~ivi  163 (233)
T d2eyqa3         151 LAEVAEGKIDILI  163 (233)
T ss_dssp             HHHHHTTCCSEEE
T ss_pred             HHHHhCCCCCEEE
Confidence            4555555667655

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.40  E-value=0.018  Score=50.26  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=27.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..++++|+|++|+||||++..++..+   +..+..+++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~---~~~~~~i~~~   63 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLR   63 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC---CCCeEEEEec
Confidence            45688999999999999998876554   5566666654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.019  Score=54.05  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHh----CCCcEEEEe
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVA   50 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~----~G~kVllVd   50 (403)
                      .++.+|+|++|+||||++..+...+.+    .|.+|+++.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            357899999999999999888776653    467787666

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.37  E-value=0.043  Score=48.44  Aligned_cols=48  Identities=21%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      +++|+-.+..++.++|+.|+||||+...|+-.+.-..=++.+-.-|+.
T Consensus        20 ~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~   67 (238)
T d1vpla_          20 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV   67 (238)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecc
Confidence            455555667899999999999999998888555432224544444443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.013  Score=50.60  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      .++|+++|++||||||+...|....
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999998777554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.11  E-value=0.016  Score=56.17  Aligned_cols=39  Identities=31%  Similarity=0.521  Sum_probs=32.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP   56 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp   56 (403)
                      |+-|+++||+|||||-+|..||..+   +.+-..+||-.+..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l---~VPFv~~daT~fTe   87 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTE   87 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGGC-
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHh---CCCEEEeecceeee
Confidence            5678999999999999999998766   77888888876543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.08  E-value=0.015  Score=52.46  Aligned_cols=23  Identities=39%  Similarity=0.627  Sum_probs=20.2

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .+..++|+|.|.|||||+...|.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~  133 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLA  133 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CceEEEEEecCccchhhhhhhhh
Confidence            45668999999999999998887

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.06  E-value=0.014  Score=52.48  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=24.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhC-C---CcEEEEe
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQ-G---KSCMLVA   50 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~-G---~kVllVd   50 (403)
                      ++|.|.+||||||+++..+.++.+. +   .+|+++.
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             EEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence            5677999999999987766666432 3   4787776

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.019  Score=49.43  Aligned_cols=29  Identities=24%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      ++.|..++++|++|+||||++..+|..+-
T Consensus        21 ~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          21 GRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            34577799999999999999999998875

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.00  E-value=0.021  Score=49.80  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI   59 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~   59 (403)
                      -+++++++|+|||+++...+.++..+|.+|+++.  |.+.-..
T Consensus        60 ~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~--Pt~~La~  100 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF--PTSLLVI  100 (237)
T ss_dssp             CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE--SCHHHHH
T ss_pred             CEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe--ccHHHHH
Confidence            3667799999999988888888888899999888  6554443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.017  Score=48.55  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=20.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANY   38 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~   38 (403)
                      .+.|+++|++||||||+...|...
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999999999777643

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.86  E-value=0.026  Score=51.07  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCC----CcEEEEec
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQG----KSCMLVAG   51 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G----~kVllVd~   51 (403)
                      ++|.|.+||||||++..-+.+|...+    .+++++..
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~   64 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF   64 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEES
T ss_pred             EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEec
Confidence            66779999999999887666665433    47777763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.67  E-value=0.083  Score=46.61  Aligned_cols=45  Identities=24%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      +++|+-++ -++++.|+.||||||+...|+..+.-..=+|.+-.-|
T Consensus        17 ~vs~~~~~-e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~   61 (240)
T d2onka1          17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD   61 (240)
T ss_dssp             EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred             EEEEEeCC-EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEE
Confidence            34444433 3678899999999999988886654322245443333

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.55  E-value=0.13  Score=46.01  Aligned_cols=91  Identities=20%  Similarity=0.123  Sum_probs=54.2

Q ss_pred             cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC-ChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHH
Q 015657           11 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG   89 (403)
Q Consensus        11 ~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~-rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~   89 (403)
                      ....|..-++.|-.|||||-++...+......|+.|++...-.. .+..+..+..+-...++.+........+. .-.+.
T Consensus       100 ~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~-~r~~~  178 (264)
T d1gm5a3         100 ISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPS-EKEKI  178 (264)
T ss_dssp             HSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHH-HHHHH
T ss_pred             hccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchH-HHHHH
Confidence            34556667899999999999999999888889999987763210 01112222233334455554443333333 23344


Q ss_pred             HHHHHhCCCcEEE
Q 015657           90 LEEAKKKNVDVVI  102 (403)
Q Consensus        90 l~~~~~~~~D~VI  102 (403)
                      +..+.....++||
T Consensus       179 ~~~~~~g~~~iiI  191 (264)
T d1gm5a3         179 KSGLRNGQIDVVI  191 (264)
T ss_dssp             HHHHHSSCCCEEE
T ss_pred             HHHHHCCCCCEEE
Confidence            4555555667554

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.51  E-value=0.015  Score=53.37  Aligned_cols=19  Identities=32%  Similarity=0.366  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.|.|||||+-..|.
T Consensus         3 v~lvG~pn~GKStlfn~lt   21 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAAT   21 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EeEECCCCCCHHHHHHHHH
Confidence            7899999999999998886

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.46  E-value=0.011  Score=51.05  Aligned_cols=33  Identities=30%  Similarity=0.583  Sum_probs=26.2

Q ss_pred             ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657            8 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus         8 l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      ++|+-.+..+++++|+.||||||+...|+..+.
T Consensus        20 is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          20 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhcccc
Confidence            444445667899999999999999988886554

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.45  E-value=0.022  Score=49.66  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=24.7

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe-ccCC
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVY   54 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd-~D~~   54 (403)
                      +++|+++|.-||||||+|..|+.   +.|  ..+++ +|+.
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e---~~g--~~~i~~aD~i   36 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMS---NYS--AVKYQLAGPI   36 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH---HSC--EEECCTTHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH---hCC--CeEEcccHHH
Confidence            47899999999999999955432   235  44566 5633

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.41  E-value=0.026  Score=50.55  Aligned_cols=43  Identities=21%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             CCEEEEEEcCCCCcHHHH-HHHHHHHHHhCCCcEEEEeccCCChhh
Q 015657           14 RPTVILLAGLQGVGKTTV-SAKLANYLKKQGKSCMLVAGDVYRPAA   58 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTl-a~~LA~~L~~~G~kVllVd~D~~rp~~   58 (403)
                      +.+.+++.+++|+|||+. ...+...+..+|.+|+++.  |.+.-+
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~--Ptr~La   51 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILA--PTRVVA   51 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEE--SSHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEc--cHHHHH
Confidence            346688899999999963 3355555556688998876  555544

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.35  E-value=0.035  Score=46.81  Aligned_cols=28  Identities=29%  Similarity=0.479  Sum_probs=22.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      .+-++++|++|+||||+|..    |.++|++.
T Consensus        14 g~gvl~~G~sG~GKStlal~----l~~~g~~l   41 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALE----LVQRGHRL   41 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHH----HHHTTCEE
T ss_pred             CEEEEEEeCCCCCHHHHHHH----HHHcCCeE
Confidence            46689999999999999954    55678864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.23  E-value=0.1  Score=46.41  Aligned_cols=47  Identities=21%  Similarity=0.387  Sum_probs=32.7

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      +++|+-.+..+++++|+.||||||+...|+-.+.-..=+|.+-.-|.
T Consensus        22 ~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i   68 (254)
T d1g6ha_          22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI   68 (254)
T ss_dssp             EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence            45555556788999999999999999888865543322555444443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.02  E-value=0.033  Score=46.11  Aligned_cols=29  Identities=24%  Similarity=0.412  Sum_probs=25.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      .+.-+|.+.|.=|+||||++..++..|.-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            45678999999999999999999988743

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.98  E-value=0.038  Score=51.97  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY   54 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~   54 (403)
                      ..++..++++|++|||||-+|..||..+   +....-+|+-.|
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~---~~~~ir~D~s~~  104 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATSL  104 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGC
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhc---ccceeehhhhhc
Confidence            3467779999999999999999998775   344555665544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.95  E-value=0.032  Score=47.10  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=22.4

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      .+-++++|++|+||||+|..|    .++|++.
T Consensus        15 g~gvli~G~sG~GKS~lal~l----~~~G~~l   42 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDL----INKNHLF   42 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHH----HTTTCEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHH----HHcCCce
Confidence            466899999999999999554    4678864

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.94  E-value=0.17  Score=43.02  Aligned_cols=30  Identities=23%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      .+++.+.|+|||.++..++.   +.+.+++++.
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~---~~~~~~Liv~  117 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAIN---ELSTPTLIVV  117 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHH---HSCSCEEEEE
T ss_pred             cEEEeCCCCCceehHHhHHH---HhcCceeEEE
Confidence            34667899999998876654   4467887776

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.78  E-value=0.037  Score=46.31  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcE
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSC   46 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kV   46 (403)
                      .+-++++|.+|+||||++    ..|.++|++.
T Consensus        15 g~gvli~G~sg~GKS~la----~~l~~~g~~l   42 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETA----LELIKRGHRL   42 (169)
T ss_dssp             TEEEEEEESTTSSHHHHH----HHHHHTTCEE
T ss_pred             CEEEEEEeCCCCCHHHHH----HHHHHcCCeE
Confidence            466899999999999988    4455678863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.43  E-value=0.026  Score=50.55  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +++|.-.+.-+++++|+.||||||++..|+..+
T Consensus        20 ~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          20 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             ceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            455555667899999999999999998887544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.39  E-value=0.037  Score=45.22  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=19.1

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      ++..-|+++|.+||||||+...|.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            344457899999999999997764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.89  E-value=0.052  Score=51.39  Aligned_cols=28  Identities=36%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      ...-++++|.+|||||+++..||..+..
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i~~   69 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRIVK   69 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHHHh
Confidence            3344577899999999999999998875

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.88  E-value=0.12  Score=43.01  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH-hCCCcEEEEe
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVA   50 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~-~~G~kVllVd   50 (403)
                      ++++++.|+|||+++..++.... +.+.+++++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence            45778999999998887776544 4577887776

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.86  E-value=0.027  Score=52.32  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA   50 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd   50 (403)
                      .|+|-|.-||||||++..|+.+|..+|.+|.++.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            3677799999999999999999998898987764

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.82  E-value=0.072  Score=44.94  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      +++|+|...||||..|..|+    ..+.+|.+|..
T Consensus         1 iiLVtGGarSGKS~~AE~l~----~~~~~~~YiAT   31 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI----GDAPQVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH----CSCSSEEEEEC
T ss_pred             CEEEECCCCccHHHHHHHHH----hcCCCcEEEEc
Confidence            47899999999999997764    44667777764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=91.80  E-value=0.045  Score=43.89  Aligned_cols=20  Identities=50%  Similarity=0.765  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      -|+++|.+||||||+...+.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~   26 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999997765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.71  E-value=0.05  Score=43.19  Aligned_cols=19  Identities=42%  Similarity=0.623  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...|.
T Consensus         3 I~liG~~nvGKSSLln~l~   21 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLK   21 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999997765

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.29  Score=38.83  Aligned_cols=38  Identities=13%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+-+++|+=.|||||-....+..+...|++|+++...
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~   39 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA   39 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            35678899999999999999999999899999988643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.42  E-value=0.094  Score=44.24  Aligned_cols=42  Identities=24%  Similarity=0.215  Sum_probs=28.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ   61 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~   61 (403)
                      ++++++.|+|||+++...+.....++.+|+++.  |.+.-..++
T Consensus        43 ~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~--P~~~L~~q~   84 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV--PLRALAGEK   84 (202)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE--SSHHHHHHH
T ss_pred             EEEEcCCCCchhHHHHHHHHHHhhccCcceeec--ccHHHHHHH
Confidence            678899999999887544444445567887776  555443333

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.034  Score=48.86  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLAN   37 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~   37 (403)
                      +++|+=.+.-++++.|+.|+||||+...|+.
T Consensus        17 ~isl~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             SEEEEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3455545668899999999999999988875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.17  Score=45.35  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHH
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .+-.||.++|+.++||||+...|.
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~   53 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLA   53 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHc
Confidence            345788899999999999998876

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.14  E-value=0.19  Score=44.81  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLAN   37 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~   37 (403)
                      -|.++|+|.|||||+-..|..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            378999999999999987773

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.10  E-value=1.5  Score=35.20  Aligned_cols=100  Identities=18%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCc-eEeCCC-CCCHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-VYTAGT-EVKPSQIAKQGLEEA   93 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-v~~~~~-~~~~~~~~~~~l~~~   93 (403)
                      ..++|.|.|++|=-+     +..++..|.+|.+++.+..+      + ......+.. .+.... .....+.. +.+...
T Consensus        28 ~~vlV~G~G~vG~~~-----~~~ak~~Ga~vi~v~~~~~r------~-~~a~~~ga~~~~~~~~~~~~~~~~~-~~~~~~   94 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVS-----VLAAKAYGAFVVCTARSPRR------L-EVAKNCGADVTLVVDPAKEEESSII-ERIRSA   94 (170)
T ss_dssp             CEEEEECCSHHHHHH-----HHHHHHTTCEEEEEESCHHH------H-HHHHHTTCSEEEECCTTTSCHHHHH-HHHHHH
T ss_pred             CEEEEEcccccchhh-----HhhHhhhcccccccchHHHH------H-HHHHHcCCcEEEeccccccccchhh-hhhhcc
Confidence            445667877666332     23334568899988876322      1 122333433 222222 22333333 333333


Q ss_pred             HhCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEe
Q 015657           94 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVD  136 (403)
Q Consensus        94 ~~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvd  136 (403)
                      ...++| ++||+.|..       ..+......+.+...++++-
T Consensus        95 ~g~g~D-~vid~~g~~-------~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          95 IGDLPN-VTIDCSGNE-------KCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SSSCCS-EEEECSCCH-------HHHHHHHHHSCTTCEEEECS
T ss_pred             cccCCc-eeeecCCCh-------HHHHHHHHHHhcCCceEEEe
Confidence            235678 458888864       22333445556666666553

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.61  Score=41.89  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=30.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhC-CCcEEEEeccCCChhhHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQL   62 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~-G~kVllVd~D~~rp~~~~~l   62 (403)
                      ...+.|.|..|+||||++..++...... ..-|+++.+=-.++..+..+
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~iger~~ev~~~   91 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM   91 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEEECHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeeceeHHHHHhH
Confidence            3447888999999999999999988754 33343333322344444443

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=89.59  E-value=1.4  Score=33.44  Aligned_cols=55  Identities=22%  Similarity=0.224  Sum_probs=32.8

Q ss_pred             CCcEEEEeccCCChhhHHHHHHhhhccCCceEe-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 015657           43 GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT-AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        43 G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~-~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg  107 (403)
                      |+||++||-|+   ...+.+...-+..|..+.. ..   +.    .++++.++...||+||+|-..
T Consensus         1 GkrILivDD~~---~~~~~l~~~L~~~g~~v~~~a~---~~----~~al~~~~~~~~dliilD~~m   56 (118)
T d1u0sy_           1 GKRVLIVDDAA---FMRMMLKDIITKAGYEVAGEAT---NG----REAVEKYKELKPDIVTMDITM   56 (118)
T ss_dssp             CCEEEEECSCH---HHHHHHHHHHHHTTCEEEEEES---SH----HHHHHHHHHHCCSEEEEECSC
T ss_pred             CCEEEEEeCCH---HHHHHHHHHHHHcCCceEEEEC---CH----HHHHHHHHhccCCEEEEecCC
Confidence            78999999773   3333333333455666542 21   12    334445555689999999743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.56  E-value=0.66  Score=38.04  Aligned_cols=100  Identities=18%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ..|+|.|.|++|  .++..+|.   ..|. +|.+++.+..+-       ...+..|..........+..+..+...+...
T Consensus        30 ~~VlV~GaG~iG--~~~~~~ak---~~Ga~~Vi~~~~~~~~~-------~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~   97 (182)
T d1vj0a2          30 KTVVIQGAGPLG--LFGVVIAR---SLGAENVIVIAGSPNRL-------KLAEEIGADLTLNRRETSVEERRKAIMDITH   97 (182)
T ss_dssp             CEEEEECCSHHH--HHHHHHHH---HTTBSEEEEEESCHHHH-------HHHHHTTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCccc--hhheeccc---ccccccccccccccccc-------cccccccceEEEeccccchHHHHHHHHHhhC
Confidence            456677877666  33434443   3575 788888763221       1233445443332333344444444443333


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEE
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV  135 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVv  135 (403)
                      ..++|+ +|||.|...       .+......+.+...++++
T Consensus        98 ~~g~Dv-vid~vG~~~-------~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          98 GRGADF-ILEATGDSR-------ALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TSCEEE-EEECSSCTT-------HHHHHHHHEEEEEEEEEC
T ss_pred             CCCceE-EeecCCchh-------HHHHHHHHhcCCCEEEEE
Confidence            345785 668888642       122333444455555544

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=1.6  Score=35.89  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      |.+||.|+|.  -||||++.-|+..|...|++|.+.
T Consensus         1 p~kvI~VTGT--nGKTTt~~mi~~iL~~~g~~~~~~   34 (214)
T d1gg4a4           1 PARVVALTGS--SGKTSVKEMTAAILSQCGNTLYTA   34 (214)
T ss_dssp             CCEEEEEECS--SCHHHHHHHHHHHHTTTSCEEECC
T ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHHhCCCCEEEe
Confidence            3478999987  469999999999999999888654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.41  E-value=0.43  Score=41.82  Aligned_cols=83  Identities=13%  Similarity=0.293  Sum_probs=48.8

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .++++|+|- +|-|+     .+|..|+++|.+|.+++-+      .+.+.......+..+.....+....+.+.+.++.+
T Consensus         5 gK~alVTGas~GIG~-----aia~~la~~Ga~V~~~~r~------~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           5 GKTALITGSARGIGR-----AFAEAYVREGARVAIADIN------LEAARATAAEIGPAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TEEEEEETCSSHHHH-----HHHHHHHHTTEEEEEEESC------HHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEECC------HHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHH
Confidence            478889977 88887     4567888999999998865      22333333333444433333333444444444444


Q ss_pred             H--hCCCcEEEEeCCCCc
Q 015657           94 K--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~--~~~~D~VIIDtpg~l  109 (403)
                      .  ....|++| =++|..
T Consensus        74 ~~~~g~iDilV-nnAg~~   90 (256)
T d1k2wa_          74 LDRWGSIDILV-NNAALF   90 (256)
T ss_dssp             HHHHSCCCEEE-ECCCCC
T ss_pred             HHHhCCccEEE-eecccc
Confidence            3  25788654 466544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.36  E-value=0.11  Score=41.97  Aligned_cols=85  Identities=19%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHH---HHHhhh---cCC-eeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNI---EIG-ITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~---~~~~~~---~~~-i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|+++.........   ...  .-.++.+++|.|..........   ...+..   .-+ +.-+|.||.|...
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~  123 (165)
T d1z06a1          49 ERIKIQLWDTAGQERFRKSMV---QHY--YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS  123 (165)
T ss_dssp             EEEEEEEEECCCSHHHHTTTH---HHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred             cceEEEEEeccCchhhccccc---eee--ecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh
Confidence            457788999998643211111   111  1245889999998665444332   222211   112 3448889999643


Q ss_pred             c----hhHHHHHHHHhCCCeE
Q 015657          169 R----GGAALSVKEVSGKPIK  185 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi~  185 (403)
                      .    ...+....+..+++..
T Consensus       124 ~~~v~~~~~~~~~~~~~~~~~  144 (165)
T d1z06a1         124 AIQVPTDLAQKFADTHSMPLF  144 (165)
T ss_dssp             GCCSCHHHHHHHHHHTTCCEE
T ss_pred             ccchhHHHHHHHHHHCCCEEE
Confidence            2    3445667777888763

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=1.6  Score=33.22  Aligned_cols=67  Identities=13%  Similarity=0.156  Sum_probs=38.0

Q ss_pred             CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHH
Q 015657           44 KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK  120 (403)
Q Consensus        44 ~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~  120 (403)
                      +||++||-|+   ...+.+...-...|..+.....       ..++++.+....||+||+|.-.--...-.+...+.
T Consensus         1 KkILiVDD~~---~~~~~l~~~L~~~g~~v~~a~~-------~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~lr   67 (121)
T d1zesa1           1 RRILVVEDEA---PIREMVCFVLEQNGFQPVEAED-------YDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLK   67 (121)
T ss_dssp             CEEEEECSCH---HHHHHHHHHHHHTTCEEEEECS-------HHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHHHH
T ss_pred             CEEEEEeCCH---HHHHHHHHHHHHCCCEEEEECC-------hHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHH
Confidence            5799999773   3333333333455666665432       24456666667899999996432222334444443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.65  E-value=0.11  Score=48.08  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=26.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      +..|.|-|.-||||||++..|+.++..++ .+.++
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            35677889999999999999999887655 45444

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.56  E-value=0.13  Score=42.46  Aligned_cols=19  Identities=32%  Similarity=0.628  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |+++|.+||||||+...|.
T Consensus         5 v~vvG~~~vGKSSLi~~l~   23 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYV   23 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999997765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.29  E-value=3.2  Score=31.70  Aligned_cols=69  Identities=28%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN   97 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~   97 (403)
                      |+++|.|-.|+     .|+..|.+.|+.|.+||.|+      +.+....+..+..++..+. .++     +.+..+.-+.
T Consensus         3 IvI~G~G~~G~-----~la~~L~~~g~~v~vid~d~------~~~~~~~~~~~~~vi~Gd~-~~~-----~~l~~~~i~~   65 (132)
T d1lssa_           3 IIIAGIGRVGY-----TLAKSLSEKGHDIVLIDIDK------DICKKASAEIDALVINGDC-TKI-----KTLEDAGIED   65 (132)
T ss_dssp             EEEECCSHHHH-----HHHHHHHHTTCEEEEEESCH------HHHHHHHHHCSSEEEESCT-TSH-----HHHHHTTTTT
T ss_pred             EEEECCCHHHH-----HHHHHHHHCCCCcceecCCh------hhhhhhhhhhhhhhccCcc-cch-----hhhhhcChhh
Confidence            56777655554     46678889999999999982      2232333444666665432 222     1233333345


Q ss_pred             CcEEEE
Q 015657           98 VDVVIV  103 (403)
Q Consensus        98 ~D~VII  103 (403)
                      +|.+++
T Consensus        66 a~~vv~   71 (132)
T d1lssa_          66 ADMYIA   71 (132)
T ss_dssp             CSEEEE
T ss_pred             hhhhcc
Confidence            676665

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.28  E-value=1.8  Score=38.35  Aligned_cols=40  Identities=30%  Similarity=0.273  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEeccCCChh
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPA   57 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd~D~~rp~   57 (403)
                      -+.+.|..|+||||++..++...++..- -+.++.++ .|+.
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iG-er~~  110 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG-ERTR  110 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEES-CCHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEEec-cChH
Confidence            3777888899999999999988654322 23344444 4433

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.16  E-value=2.5  Score=31.83  Aligned_cols=53  Identities=23%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657           44 KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTA  106 (403)
Q Consensus        44 ~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtp  106 (403)
                      +||++||-|+   ...+.+...-...|..+.....   +    .++++.+....||+||+|-.
T Consensus         1 KrILiVdDd~---~~~~~l~~~L~~~g~~v~~a~~---~----~eal~~~~~~~~dlillD~~   53 (117)
T d2a9pa1           1 KKILIVDDEK---PISDIIKFNMTKEGYEVVTAFN---G----REALEQFEAEQPDIIILDLM   53 (117)
T ss_dssp             CEEEEECSCH---HHHHHHHHHHHHTTCEEEEESS---H----HHHHHHHHHHCCSEEEECSS
T ss_pred             CEEEEEECCH---HHHHHHHHHHHHCCCEEEEECC---H----HHHHHHHHhcCCCEEEeccc
Confidence            5799999773   3333333333455666665433   2    34455555578999999963

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.14  E-value=0.91  Score=39.54  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=54.7

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .++++|+|- +|-|+.     +|..|+++|.+|.+++.+..+.....++.......++.++..+...+ ...+++.++.+
T Consensus         5 gK~vlITGgs~GIG~~-----~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~   78 (254)
T d1sbya1           5 NKNVIFVAALGGIGLD-----TSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP-VAESKKLLKKI   78 (254)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSC-HHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCC-HHHHHHHHHHH
Confidence            467888877 788764     56788899999988877766665555554444444555565554322 22333334433


Q ss_pred             H--hCCCcEEEEeCCCCcc
Q 015657           94 K--KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        94 ~--~~~~D~VIIDtpg~l~  110 (403)
                      .  ....|++| =++|...
T Consensus        79 ~~~~g~iDilv-nnAG~~~   96 (254)
T d1sbya1          79 FDQLKTVDILI-NGAGILD   96 (254)
T ss_dssp             HHHHSCCCEEE-ECCCCCC
T ss_pred             HHHcCCCCEEE-eCCCCCC
Confidence            2  25678555 5777654

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.99  E-value=0.32  Score=40.79  Aligned_cols=37  Identities=32%  Similarity=0.368  Sum_probs=30.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      ..+++|+|+|.  .||||++.-|+..|...|+++..+-.
T Consensus        12 ~~~~~iAITGT--nGKTTt~~~l~~iL~~~g~~~~~~~g   48 (207)
T d1j6ua3          12 EKKEEFAVTGT--DGKTTTTAMVAHVLKHLRKSPTVFLG   48 (207)
T ss_dssp             HCCCEEEEECS--SSHHHHHHHHHHHHHHTTCCCEEECS
T ss_pred             cCCCEEEEECC--CCHHHHHHHHHHHHHhCCCCCeEEEC
Confidence            45688999887  67999999999999999988665543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.87  E-value=0.15  Score=42.07  Aligned_cols=67  Identities=19%  Similarity=0.118  Sum_probs=36.7

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH-------HHhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~-------~~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.+.|+++.-......     . ......+.+++|.|.....+.....       .......++ -+|.||.|...
T Consensus        51 ~~~~~~~~d~~g~~~~~~~~-----~-~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~pi-ilvgnK~Dl~~  123 (183)
T d1mh1a_          51 KPVNLGLWDTAGQEDYDRLR-----P-LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRD  123 (183)
T ss_dssp             EEEEEEEECCCCSGGGTTTG-----G-GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCE-EEEEECHHHHT
T ss_pred             cceEEEeecccccccchhhh-----h-hcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcE-EEEeecccchh
Confidence            35677888998864321110     0 0112358889999986654433322       112223333 47889998543


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       124 ~  124 (183)
T d1mh1a_         124 D  124 (183)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.15  Score=41.32  Aligned_cols=83  Identities=12%  Similarity=0.044  Sum_probs=46.3

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHh---hhcCC-eeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTF---NIEIG-ITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~---~~~~~-i~GvIlNk~D~~~  168 (403)
                      ..+.+-|.||++...... +.     ......++.+++|.|.....+.....   ..+   ..... +..+|.||.|...
T Consensus        50 ~~~~l~i~d~~g~~~~~~-~~-----~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~  123 (167)
T d1xtqa1          50 QEYHLQLVDTAGQDEYSI-FP-----QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM  123 (167)
T ss_dssp             EEEEEEEEECCCCCTTCC-CC-----GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG
T ss_pred             EEEEeeeccccccccccc-cc-----chhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc
Confidence            457888999998754311 00     01122458889999986654443332   122   11222 3447889999643


Q ss_pred             c----hhHHHHHHHHhCCCe
Q 015657          169 R----GGAALSVKEVSGKPI  184 (403)
Q Consensus       169 ~----~~~~~~~~~~~g~pi  184 (403)
                      .    ...+....+..+.+.
T Consensus       124 ~r~v~~~~~~~~a~~~~~~~  143 (167)
T d1xtqa1         124 ERVISYEEGKALAESWNAAF  143 (167)
T ss_dssp             GCCSCHHHHHHHHHHHTCEE
T ss_pred             ccchhHHHHHHHHHHcCCEE
Confidence            2    234455666677654

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=87.66  E-value=2.5  Score=32.86  Aligned_cols=54  Identities=17%  Similarity=0.025  Sum_probs=32.4

Q ss_pred             CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 015657           44 KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        44 ~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg  107 (403)
                      .||++||-|+..-..   +...-...|..+.....       ..++++.+....+|+||+|.-.
T Consensus         2 arILiVDD~~~~~~~---l~~~L~~~g~~v~~a~~-------~~eal~~~~~~~~dlil~D~~~   55 (139)
T d1w25a1           2 ARILVVDDIEANVRL---LEAKLTAEYYEVSTAMD-------GPTALAMAARDLPDIILLDVMM   55 (139)
T ss_dssp             CEEEEECSSTTHHHH---HHHHHHHTTCEEEEESS-------HHHHHHHHHHHCCSEEEEESCC
T ss_pred             CEEEEEECCHHHHHH---HHHHHHHCCCEEEEEcc-------chhhhhhhhcccceeeeeeccc
Confidence            479999988554333   33333445666655432       2344555555689999999743

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=87.59  E-value=0.37  Score=46.69  Aligned_cols=39  Identities=33%  Similarity=0.511  Sum_probs=32.6

Q ss_pred             CCEEEEEEcC----CCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           14 RPTVILLAGL----QGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        14 ~~~iI~v~G~----gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      ..+.|+|++.    -|.||||++..|+..|.+.|+++.+.--.
T Consensus        50 ~gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~lRe   92 (549)
T d1eg7a_          50 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLRE   92 (549)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CceEEEEEeCCCCCCCCCcceeHHhHHHHHHHhCCceEEEEec
Confidence            4578888853    79999999999999999999999765444

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=87.53  E-value=1.4  Score=38.98  Aligned_cols=61  Identities=21%  Similarity=0.158  Sum_probs=40.3

Q ss_pred             CCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCCh-hhHHHHHHhhhccCCceEeCCCCCCHH
Q 015657           23 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-AAIDQLVILGEQVGVPVYTAGTEVKPS   83 (403)
Q Consensus        23 ~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp-~~~~~l~~~~~~~gv~v~~~~~~~~~~   83 (403)
                      +.|-|||.++...|...+-.|+.|-+|....|-. ...+++...-+..|+.+-.......+.
T Consensus       101 ~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~~~~~~~~~  162 (273)
T d1tf5a3         101 KTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKD  162 (273)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHH
T ss_pred             cCCCcchhHHHHHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcCCCccccccccCHH
Confidence            4999999887777777777899999998775421 113345555566777765544444443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=87.48  E-value=0.072  Score=48.81  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      -+++.|.+|+||||++..|+..|
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            37899999999999999998766

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.28  E-value=0.83  Score=33.84  Aligned_cols=53  Identities=23%  Similarity=0.323  Sum_probs=36.7

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA   76 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~   76 (403)
                      ..+-|-|.|-+|+|-|.+    |.+|.++|+.|.--|..  .....+.+.    ..|+.++..
T Consensus         7 ~~~~ihfiGigG~GMs~L----A~~L~~~G~~VsGSD~~--~~~~~~~L~----~~Gi~v~~g   59 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGI----AEILLNEGYQISGSDIA--DGVVTQRLA----QAGAKIYIG   59 (96)
T ss_dssp             TCCEEEEETTTSTTHHHH----HHHHHHHTCEEEEEESC--CSHHHHHHH----HTTCEEEES
T ss_pred             hCCEEEEEEECHHHHHHH----HHHHHhCCCEEEEEeCC--CChhhhHHH----HCCCeEEEC
Confidence            345688999999999886    48889999999877643  223333332    357777654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.08  E-value=0.16  Score=41.70  Aligned_cols=18  Identities=33%  Similarity=0.593  Sum_probs=15.8

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKL   35 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~L   35 (403)
                      |+++|.+||||||+...+
T Consensus         5 ivllG~~~vGKTsl~~r~   22 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQM   22 (195)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            688899999999999654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=87.03  E-value=0.052  Score=44.54  Aligned_cols=25  Identities=36%  Similarity=0.422  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      .+.+|+|+.||||||+..+|...|.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4668889999999999999998774

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.96  E-value=0.18  Score=40.74  Aligned_cols=66  Identities=21%  Similarity=0.066  Sum_probs=37.2

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHH---HHh---h-hcCCeeEEEEccCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTF---N-IEIGITGAILTKLDGD  167 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~---~~~---~-~~~~i~GvIlNk~D~~  167 (403)
                      ..+.+.+.|++|....... ..   ...  -.++.+++|.|.....+..+..   ...   . ..-.+.-+|.||.|..
T Consensus        49 ~~~~~~~~d~~g~~~~~~~-~~---~~~--~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~  121 (167)
T d1c1ya_          49 QQCMLEILDTAGTEQFTAM-RD---LYM--KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             CEEEEEEEEECSSCSSTTH-HH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             eEEEeccccccCccccccc-cc---ccc--cccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc
Confidence            4578899999997654221 11   111  1247889999986654433322   111   1 1112344888999965

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.94  E-value=0.069  Score=46.88  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA   36 (403)
                      .++.+++|.+||||||+...|.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHC
T ss_pred             cceEEEECCCCccHHHHHHhhc
Confidence            4566789999999999998886

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.87  E-value=0.16  Score=41.99  Aligned_cols=18  Identities=39%  Similarity=0.540  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKL   35 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~L   35 (403)
                      |++.|.+||||||+...+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678899999999999877

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=86.85  E-value=3.2  Score=31.31  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657           43 GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTA  106 (403)
Q Consensus        43 G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtp  106 (403)
                      ++||++||=|+   .....+...-...|..+.....   .    .++++.+....||+||+|--
T Consensus         1 NkrILvVDD~~---~~~~~l~~~L~~~g~~v~~a~~---g----~eal~~~~~~~~dlillD~~   54 (119)
T d1peya_           1 NEKILIVDDQS---GIRILLNEVFNKEGYQTFQAAN---G----LQALDIVTKERPDLVLLDMK   54 (119)
T ss_dssp             CCEEEEECSCH---HHHHHHHHHHHHTTCEEEEESS---H----HHHHHHHHHHCCSEEEEESC
T ss_pred             CCEEEEEeCCH---HHHHHHHHHHHHcCCEEEEeCC---H----HHHHHHHHhCCCCEEEEecc
Confidence            46899999773   2233333333455677665432   2    23444454568999999974

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=86.75  E-value=1.7  Score=33.11  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=32.6

Q ss_pred             CcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657           44 KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTA  106 (403)
Q Consensus        44 ~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtp  106 (403)
                      +||++||-|+.   ..+.+...-+..|..+.....   +    .++++.+....||+||+|.-
T Consensus         2 krILiVDD~~~---~~~~l~~~L~~~g~~v~~a~~---~----~~al~~~~~~~~dlil~D~~   54 (123)
T d1mb3a_           2 KKVLIVEDNEL---NMKLFHDLLEAQGYETLQTRE---G----LSALSIARENKPDLILMDIQ   54 (123)
T ss_dssp             CEEEEECSCHH---HHHHHHHHHHHTTCEEEEESC---H----HHHHHHHHHHCCSEEEEESB
T ss_pred             ceEEEEECCHH---HHHHHHHHHHHCCCEEEEECC---H----HHHHHHHHhCCCCEEEEEec
Confidence            68999998743   233333334556777765432   2    33444554568999999974

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.43  E-value=0.98  Score=39.26  Aligned_cols=85  Identities=26%  Similarity=0.313  Sum_probs=48.3

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      +|++|+|- +|-|+.     +|..|+++|.+|.+++-+.   ...+.+...-...+..++....+....+.+.+.++.+.
T Consensus         2 KValITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~---~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~   73 (255)
T d1gega_           2 KVALVTGAGQGIGKA-----IALRLVKDGFAVAIADYND---ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR   73 (255)
T ss_dssp             CEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH---HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEcCCccHHHHH-----HHHHHHHCCCEEEEEECCH---HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            57788877 788865     5678889999999988652   22222222222334444433334444555555555543


Q ss_pred             --hCCCcEEEEeCCCCc
Q 015657           95 --KKNVDVVIVDTAGRL  109 (403)
Q Consensus        95 --~~~~D~VIIDtpg~l  109 (403)
                        ....|++ |=++|..
T Consensus        74 ~~~g~iDil-VnnAG~~   89 (255)
T d1gega_          74 KTLGGFDVI-VNNAGVA   89 (255)
T ss_dssp             HHTTCCCEE-EECCCCC
T ss_pred             HHhCCccEE-Eeccccc
Confidence              2467755 5555543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.16  E-value=1.1  Score=38.94  Aligned_cols=85  Identities=18%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.++++|+|- +|-|+.     +|..|++.|.+|.+++-+.   ...+.+...-...+..+.....+....+.+++.++.
T Consensus         4 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~---~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~   75 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLA-----TALRLAEEGTAIALLDMNR---EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDS   75 (260)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH---HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH---HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence            3467888877 888864     5678889999999988652   222222222233344443333333344444444444


Q ss_pred             HH--hCCCcEEEEeCCC
Q 015657           93 AK--KKNVDVVIVDTAG  107 (403)
Q Consensus        93 ~~--~~~~D~VIIDtpg  107 (403)
                      +.  ....|++|- ++|
T Consensus        76 ~~~~~g~iDilVn-naG   91 (260)
T d1zema1          76 VVRDFGKIDFLFN-NAG   91 (260)
T ss_dssp             HHHHHSCCCEEEE-CCC
T ss_pred             HHHHhCCCCeehh-hhc
Confidence            32  256787664 444

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.03  E-value=4.2  Score=32.41  Aligned_cols=99  Identities=16%  Similarity=0.248  Sum_probs=53.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhCCC-cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA~~L~~~G~-kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ..++|.|.|+.|=.+  ..+   ++..|. +|.++|.+.      +.+ .+.+..|.+........++.+..+. +..-.
T Consensus        28 d~VlI~G~G~iG~~~--~~~---a~~~G~~~Vi~~d~~~------~rl-~~a~~~Ga~~~~~~~~~~~~~~~~~-~~~~~   94 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVT--LLV---AKAMGAAQVVVTDLSA------TRL-SKAKEIGADLVLQISKESPQEIARK-VEGQL   94 (171)
T ss_dssp             CEEEEECCSHHHHHH--HHH---HHHTTCSEEEEEESCH------HHH-HHHHHTTCSEEEECSSCCHHHHHHH-HHHHH
T ss_pred             CEEEEECCCccHHHH--HHH---HHHcCCceEEeccCCH------HHH-HHHHHhCCccccccccccccccccc-ccccC
Confidence            456777888777422  223   334576 688887662      222 2445667765555445555554433 33222


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEE
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV  135 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVv  135 (403)
                      ..++|+ +|||.|...       .+......+.+...++++
T Consensus        95 g~g~Dv-vid~~G~~~-------~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          95 GCKPEV-TIECTGAEA-------SIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             TSCCSE-EEECSCCHH-------HHHHHHHHSCTTCEEEEC
T ss_pred             CCCceE-EEeccCCch-------hHHHHHHHhcCCCEEEEE
Confidence            356785 789988642       223334444555555544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.79  E-value=1.1  Score=39.01  Aligned_cols=85  Identities=22%  Similarity=0.306  Sum_probs=48.2

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           16 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        16 ~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      +|.+|+|- +|-|+     .+|..|+++|.+|.+++-+   +...+.....-...+..+.....+....+.+++.++.+.
T Consensus         3 KValITGas~GIG~-----aia~~la~~Ga~V~i~~r~---~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~   74 (257)
T d2rhca1           3 EVALVTGATSGIGL-----EIARRLGKEGLRVFVCARG---EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV   74 (257)
T ss_dssp             CEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESC---HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEECC---HHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            57888877 88886     4567888999999988865   222222221112334444433334444444555555543


Q ss_pred             --hCCCcEEEEeCCCCc
Q 015657           95 --KKNVDVVIVDTAGRL  109 (403)
Q Consensus        95 --~~~~D~VIIDtpg~l  109 (403)
                        ....|++| =++|..
T Consensus        75 ~~~g~iDilV-nnAG~~   90 (257)
T d2rhca1          75 ERYGPVDVLV-NNAGRP   90 (257)
T ss_dssp             HHTCSCSEEE-ECCCCC
T ss_pred             HHhCCCCEEE-eccccc
Confidence              24577555 566543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.64  E-value=0.19  Score=41.29  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 015657           18 ILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA   36 (403)
                      |++.|.+||||||+...+.
T Consensus         5 iv~lG~~~vGKTsll~r~~   23 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMR   23 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7888999999999997663

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=85.62  E-value=0.47  Score=39.46  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      +.++|+|+|.  .||||++.-|+..|...|+++.+.
T Consensus        10 ~~~vI~VTGT--~GKTTt~~~l~~iL~~~g~~~~~~   43 (204)
T d2jfga3          10 QAPIVAITGS--NGKSTVTTLVGEMAKAAGVNVGVG   43 (204)
T ss_dssp             CSCEEEEECS--SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECC--CCHHHHHHHHHHHHHhcCCCcccC
Confidence            4568899887  579999999999999999888654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.48  E-value=0.44  Score=41.64  Aligned_cols=40  Identities=18%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChh
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA   57 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~   57 (403)
                      |+|.|..|+|||++|..|..+..........++|......
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~   65 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD   65 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhc
Confidence            6888999999999997776544344445556666544443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.24  Score=41.05  Aligned_cols=67  Identities=12%  Similarity=0.095  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEEecccHHHHHHHHH-------HhhhcCCeeEEEEccCCCCC
Q 015657           96 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT-------TFNIEIGITGAILTKLDGDS  168 (403)
Q Consensus        96 ~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVvda~~g~~~~~~~~-------~~~~~~~i~GvIlNk~D~~~  168 (403)
                      ..+.+.|.|++|.-.... +.    .. ..-..+.+++|.|.....+..+...       ......+ ..+|.||+|...
T Consensus        49 ~~~~l~i~D~~g~~~~~~-~~----~~-~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~-i~lvgnK~Dl~~  121 (191)
T d2ngra_          49 EPYTLGLFDTAGQEDYDR-LR----PL-SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRD  121 (191)
T ss_dssp             EEEEEEEEEECCSGGGTT-TG----GG-GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECGGGGG
T ss_pred             ceeeeeccccccchhhhh-hh----hh-cccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCc-eEEEeccccccc
Confidence            356889999999753211 10    00 1114588899999866544333321       1112223 347889998654


Q ss_pred             c
Q 015657          169 R  169 (403)
Q Consensus       169 ~  169 (403)
                      .
T Consensus       122 ~  122 (191)
T d2ngra_         122 D  122 (191)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=84.94  E-value=1.3  Score=38.38  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=25.9

Q ss_pred             CEEEEEEcCCC-CcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGLQG-VGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~gG-sGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      -++++|+|-.| .|   +-.++|..|+++|.+|.+++-+
T Consensus         5 gK~alITGaag~~G---IG~AiA~~la~~Ga~V~i~~r~   40 (274)
T d2pd4a1           5 GKKGLIVGVANNKS---IAYGIAQSCFNQGATLAFTYLN   40 (274)
T ss_dssp             TCEEEEECCCSTTS---HHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCEEEEECCCCCcH---HHHHHHHHHHHCCCEEEEEeCC
Confidence            46788888632 23   4445678899999999999976

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.86  E-value=0.5  Score=39.69  Aligned_cols=35  Identities=29%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      .++|+|+|.  .||||++.-|+..|...|+++..+..
T Consensus        12 ~~~I~ITGT--nGKTTt~~~l~~iL~~~~~~~~~~~g   46 (215)
T d1p3da3          12 RHGIAVAGT--HGKTTTTAMISMIYTQAKLDPTFVNG   46 (215)
T ss_dssp             SEEEEEESS--SCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCEEEEECC--CCHHHHHHHHHHHHHhCCCCceEeeC
Confidence            478999886  68999999999999999998876543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=1.2  Score=38.83  Aligned_cols=87  Identities=21%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhcc--CCceEeCCCCCCHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV--GVPVYTAGTEVKPSQIAKQGL   90 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~--gv~v~~~~~~~~~~~~~~~~l   90 (403)
                      +-++++|+|- +|.|+     .+|..|+++|.+|.+++-|.   ...+.+...-...  +..+.....+....+.+++.+
T Consensus         9 k~Kv~lITGas~GIG~-----aiA~~la~~G~~Vv~~~r~~---~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v   80 (257)
T d1xg5a_           9 RDRLALVTGASGGIGA-----AVARALVQQGLKVVGCARTV---GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF   80 (257)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH---HHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEECCH---HHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHH
Confidence            3578889877 77776     46678889999998887652   2223322111112  122332222333344444444


Q ss_pred             HHHH--hCCCcEEEEeCCCCc
Q 015657           91 EEAK--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        91 ~~~~--~~~~D~VIIDtpg~l  109 (403)
                      +.+.  ....|++| =++|..
T Consensus        81 ~~~~~~~g~iD~lV-nnAg~~  100 (257)
T d1xg5a_          81 SAIRSQHSGVDICI-NNAGLA  100 (257)
T ss_dssp             HHHHHHHCCCSEEE-ECCCCC
T ss_pred             HHHHHhcCCCCEEE-eccccc
Confidence            4443  25788765 466554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=84.39  E-value=0.21  Score=45.98  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEE
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV   49 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllV   49 (403)
                      |.|-|.=||||||++..|+..+...  .|.++
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~~~--~v~~~   36 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGSRD--DIVYV   36 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC----C--CEEEE
T ss_pred             EEEECCcCCCHHHHHHHHHHHhCCC--CeEEe
Confidence            6777999999999999998777643  45444

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=84.34  E-value=0.86  Score=39.45  Aligned_cols=82  Identities=20%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccC--CceEeCCCCCCHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG--VPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~g--v~v~~~~~~~~~~~~~~~~l~   91 (403)
                      .++++|+|- +|-|+.     +|..|+++|.+|.+++-+   +...+.+   .+..+  ...+..  +....+.+++.++
T Consensus         4 gK~alITGas~GIG~a-----~a~~l~~~G~~Vv~~~r~---~~~l~~~---~~~~~~~~~~~~~--Dv~~~~~v~~~~~   70 (243)
T d1q7ba_           4 GKIALVTGASRGIGRA-----IAETLAARGAKVIGTATS---ENGAQAI---SDYLGANGKGLML--NVTDPASIESVLE   70 (243)
T ss_dssp             TCEEEESSCSSHHHHH-----HHHHHHHTTCEEEEEESS---HHHHHHH---HHHHGGGEEEEEC--CTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEeCC---HHHHHHH---HHHhCCCCcEEEE--EecCHHHhhhhhh
Confidence            467888876 888875     567888999999888755   2222222   22222  222333  3333344444444


Q ss_pred             HHH--hCCCcEEEEeCCCCcc
Q 015657           92 EAK--KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        92 ~~~--~~~~D~VIIDtpg~l~  110 (403)
                      .+.  ....|++| =++|...
T Consensus        71 ~~~~~~g~iDilV-nnAg~~~   90 (243)
T d1q7ba_          71 KIRAEFGEVDILV-NNAGITR   90 (243)
T ss_dssp             HHHHHTCSCSEEE-ECCCCCC
T ss_pred             hhhcccCCcceeh-hhhhhcc
Confidence            443  24678665 5665543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.28  E-value=1.2  Score=38.56  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .++++|+|- +|-|+.     +|..|+++|.+|.+++-+
T Consensus         6 gK~alITGas~GIG~a-----ia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           6 GKVALVSGGARGMGAS-----HVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECC
Confidence            477888877 888865     457788999999988865

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.23  E-value=0.25  Score=42.24  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA   36 (403)
                      -|++.|.+||||||+...+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47888999999999987663

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.18  E-value=1.4  Score=38.44  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=46.9

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.++++|+|- +|-|+.     +|..|+++|.+|.+++-+.      +.+....+..+-.+.....+....+.+++.++.
T Consensus         4 ~gK~alVTGas~GIG~a-----ia~~la~~Ga~V~~~~r~~------~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   72 (254)
T d1hdca_           4 SGKTVIITGGARGLGAE-----AARQAVAAGARVVLADVLD------EEGAATARELGDAARYQHLDVTIEEDWQRVVAY   72 (254)
T ss_dssp             CCSEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH------HHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHH-----HHHHHHHCCCEEEEEECCH------HHHHHHHHHhCCceEEEEcccCCHHHHHHHHHH
Confidence            3467888877 777765     5678888999999888552      222222233333333222333334444444444


Q ss_pred             HH--hCCCcEEEEeCCCCc
Q 015657           93 AK--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        93 ~~--~~~~D~VIIDtpg~l  109 (403)
                      +.  ....|++| =++|..
T Consensus        73 ~~~~~g~iDilV-nnAg~~   90 (254)
T d1hdca_          73 AREEFGSVDGLV-NNAGIS   90 (254)
T ss_dssp             HHHHHSCCCEEE-ECCCCC
T ss_pred             HHHHcCCccEEE-ecCccc
Confidence            32  25688655 466654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=83.91  E-value=0.98  Score=39.33  Aligned_cols=88  Identities=14%  Similarity=0.252  Sum_probs=51.2

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.++++|+|- +|-|+.     +|..|++.|.+|.+++-+...-..  ....+....+..+.....+....+.+.+.++.
T Consensus         8 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~~~~~~--~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLA-----FTRAVAAAGANVAVIYRSAADAVE--VTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             TTEEEEEETTTSHHHHH-----HHHHHHHTTEEEEEEESSCTTHHH--HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCHHHHHH--HHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence            3478899977 777765     568888999999999877544221  11222233344444333344444555555555


Q ss_pred             HH--hCCCcEEEEeCCCCc
Q 015657           93 AK--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        93 ~~--~~~~D~VIIDtpg~l  109 (403)
                      +.  ....|++ |=++|..
T Consensus        81 ~~~~~g~iDil-VnnAg~~   98 (260)
T d1h5qa_          81 IDADLGPISGL-IANAGVS   98 (260)
T ss_dssp             HHHHSCSEEEE-EECCCCC
T ss_pred             HHHHhCCCcEe-ccccccc
Confidence            43  2467765 4466543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.49  E-value=1.1  Score=38.96  Aligned_cols=87  Identities=25%  Similarity=0.300  Sum_probs=48.0

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .++++|+|- +|-|+.     +|..|+++|.+|.+++-+..+.  .+....+....+..+.....+....+.+.+.++.+
T Consensus         5 gK~~lITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~~~~--~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFG-----IAQGLAEAGCSVVVASRNLEEA--SEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCHHHH--HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCHHHH--HHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHH
Confidence            467888877 777764     4678889999999988653221  11122223333444433333333344444444443


Q ss_pred             H--hCCCcEEEEeCCCCc
Q 015657           94 K--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~--~~~~D~VIIDtpg~l  109 (403)
                      .  ....|++| =++|..
T Consensus        78 ~~~~g~iDiLV-nnAG~~   94 (251)
T d1vl8a_          78 KEKFGKLDTVV-NAAGIN   94 (251)
T ss_dssp             HHHHSCCCEEE-ECCCCC
T ss_pred             HHHcCCCCEEE-ECCCCC
Confidence            2  25678765 466543

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.26  E-value=7.5  Score=32.04  Aligned_cols=84  Identities=23%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh--CCCcEEEEeccCCChhhH---HHHHHhhhccCCceEeCCCCCCHHHHHHHHHH
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAI---DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE   91 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~--~G~kVllVd~D~~rp~~~---~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~   91 (403)
                      -+++.++.|+|||......+.....  .|.+++++.  |.+.-+.   +.+..+....+..+............    ..
T Consensus        44 d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~--pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~----~~  117 (208)
T d1hv8a1          44 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT--PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQ----IK  117 (208)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC--SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHH----HH
T ss_pred             CeeeechhcccccceeecccccccccccCcceEEEe--eccccchhhhhhhhhhcccCCeEEEEeeCCCChHHH----HH
Confidence            3667789999999977655544332  355676665  3333222   22333444444444433322222221    12


Q ss_pred             HHHhCCCcEEEEeCCCCc
Q 015657           92 EAKKKNVDVVIVDTAGRL  109 (403)
Q Consensus        92 ~~~~~~~D~VIIDtpg~l  109 (403)
                      .+  .+.| |||=||+.+
T Consensus       118 ~l--~~~~-IlV~TP~~l  132 (208)
T d1hv8a1         118 AL--KNAN-IVVGTPGRI  132 (208)
T ss_dssp             HH--HTCS-EEEECHHHH
T ss_pred             hc--CCCC-EEEEChHHH
Confidence            22  2456 667788764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.20  E-value=5.9  Score=31.06  Aligned_cols=96  Identities=16%  Similarity=0.249  Sum_probs=50.9

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK   94 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~   94 (403)
                      ...+++.|.|++|=  ++..+   ++..|.+|.+++.+..      .+ ...+..|.+........+....++    .. 
T Consensus        28 g~~vlv~G~G~iG~--~a~~~---a~~~g~~v~~~~~~~~------r~-~~~k~~Ga~~~~~~~~~~~~~~~~----~~-   90 (168)
T d1rjwa2          28 GEWVAIYGIGGLGH--VAVQY---AKAMGLNVVAVDIGDE------KL-ELAKELGADLVVNPLKEDAAKFMK----EK-   90 (168)
T ss_dssp             TCEEEEECCSTTHH--HHHHH---HHHTTCEEEEECSCHH------HH-HHHHHTTCSEEECTTTSCHHHHHH----HH-
T ss_pred             CCEEEEeecccchh--hhhHH---HhcCCCeEeccCCCHH------Hh-hhhhhcCcceecccccchhhhhcc----cc-
Confidence            34566679888883  23333   3346888888876622      22 233456666555544444444332    22 


Q ss_pred             hCCCcEEEEeCCCCccccHHhHHHHHHHhhhcCCceEEEEE
Q 015657           95 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV  135 (403)
Q Consensus        95 ~~~~D~VIIDtpg~l~~d~~l~~el~~i~~~~~~~~vllVv  135 (403)
                      ..+.+.+|+|+++.        ..+......+.+...++++
T Consensus        91 ~~~~~~~v~~~~~~--------~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          91 VGGVHAAVVTAVSK--------PAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             HSSEEEEEESSCCH--------HHHHHHHHHEEEEEEEEEC
T ss_pred             cCCCceEEeecCCH--------HHHHHHHHHhccCCceEec
Confidence            25667777666543        1233344445555555554

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=82.94  E-value=1.2  Score=38.42  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.++++|+|- +|-|+.     +|..|++.|.+|.+++.+... ....    ..+..+..++....+....+.+.+.++.
T Consensus         4 ~gKvalVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~~~-~~~~----~~~~~g~~~~~~~~Dvs~~~~v~~~~~~   73 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRA-----IAERFAVEGADIAIADLVPAP-EAEA----AIRNLGRRVLTVKCDVSQPGDVEAFGKQ   73 (247)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSCCH-HHHH----HHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCchH-HHHH----HHHHcCCcEEEEEeeCCCHHHHHHHHHH
Confidence            3478888877 788865     567888999999998866431 1111    1223333333322333333444444444


Q ss_pred             HH--hCCCcEEEEeCCCCcc
Q 015657           93 AK--KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        93 ~~--~~~~D~VIIDtpg~l~  110 (403)
                      +.  ....|++ |=++|...
T Consensus        74 ~~~~~G~iDil-VnnAG~~~   92 (247)
T d2ew8a1          74 VISTFGRCDIL-VNNAGIYP   92 (247)
T ss_dssp             HHHHHSCCCEE-EECCCCCC
T ss_pred             HHHHcCCCCEE-EECCCCCC
Confidence            32  2578865 45666543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=82.91  E-value=0.32  Score=41.51  Aligned_cols=27  Identities=11%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLK   40 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~   40 (403)
                      +.+.+++.|++++|||+++..|+..|.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhC
Confidence            347889999999999999999998873

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.83  E-value=1.2  Score=35.49  Aligned_cols=38  Identities=13%  Similarity=0.018  Sum_probs=34.0

Q ss_pred             CCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           14 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        14 ~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      ...+-+++|+=.|||||-....+..+...|++|+++..
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~   43 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKP   43 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEe
Confidence            45777889999999999999999999999999998864

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=82.51  E-value=8.2  Score=29.13  Aligned_cols=69  Identities=13%  Similarity=0.059  Sum_probs=36.7

Q ss_pred             CCCcEEEEeccCCChhhHHHHHHhhhccCCc-eEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHH
Q 015657           42 QGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK  120 (403)
Q Consensus        42 ~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~-v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~  120 (403)
                      ++.||++||-|...-.   .+...-...|.. +.....       ..++++.++...||+||+|----....-++...+.
T Consensus         3 k~lriLvVDD~~~~r~---~i~~~L~~~g~~~v~~a~~-------g~~a~~~~~~~~~dlii~D~~mP~~dG~el~~~ir   72 (128)
T d1jbea_           3 KELKFLVVDDFSTMRR---IVRNLLKELGFNNVEEAED-------GVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIR   72 (128)
T ss_dssp             TTCCEEEECSCHHHHH---HHHHHHHHTTCCCEEEESS-------HHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHH---HHHHHHHHCCCcEEEEecC-------chHHHHHHhcCCCCEEEEecccccCCHHHHHHHHH
Confidence            5679999997733222   222222344542 333211       23445566668899999997432222334444443

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.44  E-value=2.2  Score=36.57  Aligned_cols=81  Identities=21%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .++++|+|- +|-|+.     +|..|++.|.+|.+++-+      .+.+....+..+...+..+.  ...+.+.+.++.+
T Consensus         5 gK~~lITGas~GIG~a-----ia~~l~~~G~~V~~~~r~------~~~l~~~~~~~~~~~~~~Dv--~~~~~v~~~~~~~   71 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRA-----TLELFAKEGARLVACDIE------EGPLREAAEAVGAHPVVMDV--ADPASVERGFAEA   71 (242)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESC------HHHHHHHHHTTTCEEEECCT--TCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECC------HHHHHHHHHHcCCeEEEEec--CCHHHHHHHHHHH
Confidence            467888877 888875     457888999999998865      22333344455565555532  2333344444443


Q ss_pred             H--hCCCcEEEEeCCCCc
Q 015657           94 K--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~--~~~~D~VIIDtpg~l  109 (403)
                      .  ....|+ +|=++|..
T Consensus        72 ~~~~g~iDi-lVnnAG~~   88 (242)
T d1ulsa_          72 LAHLGRLDG-VVHYAGIT   88 (242)
T ss_dssp             HHHHSSCCE-EEECCCCC
T ss_pred             HHhcCCceE-EEECCccc
Confidence            2  246785 55566654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.44  E-value=0.4  Score=39.36  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=17.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 015657           16 TVILLAGLQGVGKTTVSAKLA   36 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA   36 (403)
                      --|++.|.+||||||+...+.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~   26 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFL   26 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            347888999999999997654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.42  E-value=1.4  Score=38.19  Aligned_cols=84  Identities=21%  Similarity=0.269  Sum_probs=46.3

Q ss_pred             CCEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHH
Q 015657           14 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE   92 (403)
Q Consensus        14 ~~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~   92 (403)
                      +.++++|+|- +|-|+.     +|..|+++|.+|.+++-+   +...+.   .....+-..+....+....+.+.+.++.
T Consensus         5 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~~~---~~~~~~---~~~~~~~~~~~~~~Dv~~~~~~~~~~~~   73 (253)
T d1hxha_           5 QGKVALVTGGASGVGLE-----VVKLLLGEGAKVAFSDIN---EAAGQQ---LAAELGERSMFVRHDVSSEADWTLVMAA   73 (253)
T ss_dssp             TTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEECSC---HHHHHH---HHHHHCTTEEEECCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECC---HHHHHH---HHHHhCCCeEEEEeecCCHHHHHHHHHH
Confidence            3467888876 778864     457788999999888755   222222   2222333333323333334444444444


Q ss_pred             HH--hCCCcEEEEeCCCCc
Q 015657           93 AK--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        93 ~~--~~~~D~VIIDtpg~l  109 (403)
                      +.  ....|++| =++|..
T Consensus        74 ~~~~~g~iDilV-nnAG~~   91 (253)
T d1hxha_          74 VQRRLGTLNVLV-NNAGIL   91 (253)
T ss_dssp             HHHHHCSCCEEE-ECCCCC
T ss_pred             HHHHhCCCCeEE-eccccc
Confidence            32  25677655 466654

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.38  E-value=6.4  Score=30.14  Aligned_cols=55  Identities=16%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             CCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 015657           42 QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        42 ~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg  107 (403)
                      .|.||++||-|+   .....+...-+..|..+.....   .    .++++.+ ...||+||+|.-.
T Consensus         6 ~g~rILvVDD~~---~~~~~l~~~L~~~G~~v~~a~~---g----~eal~~l-~~~~dlillD~~m   60 (134)
T d1dcfa_           6 TGLKVLVMDENG---VSRMVTKGLLVHLGCEVTTVSS---N----EECLRVV-SHEHKVVFMDVCM   60 (134)
T ss_dssp             TTCEEEEECSCH---HHHHHHHHHHHHTTCEEEEESS---H----HHHHHHC-CTTCSEEEEECCS
T ss_pred             CCCEEEEEeCCH---HHHHHHHHHHHHCCCEEEEECC---H----HHHHHHh-hcCCCeEEEEecc
Confidence            489999999663   2222333333456666655432   2    2344444 3689999999743

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.25  E-value=1.6  Score=37.91  Aligned_cols=87  Identities=14%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .++++|+|- +|-|+     .+|..|+++|.+|.+++-+   +...+.+...-...+..+.....+....+.+.+.++.+
T Consensus         8 GK~alITGas~GIG~-----aia~~la~~Ga~V~~~~r~---~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           8 GCTALVTGGSRGIGY-----GIVEELASLGASVYTCSRN---QKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESC---HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEECC---HHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHH
Confidence            467888877 78887     4567888999999988754   22222222111223333332223344444455555554


Q ss_pred             Hh--C-CCcEEEEeCCCCcc
Q 015657           94 KK--K-NVDVVIVDTAGRLQ  110 (403)
Q Consensus        94 ~~--~-~~D~VIIDtpg~l~  110 (403)
                      ..  . ..|++ |-++|...
T Consensus        80 ~~~~~~~idil-vnnAG~~~   98 (259)
T d2ae2a_          80 ANHFHGKLNIL-VNNAGIVI   98 (259)
T ss_dssp             HHHTTTCCCEE-EECCCCCC
T ss_pred             HHHhCCCceEE-EECCceec
Confidence            32  2 35654 56776543

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.23  E-value=6.8  Score=30.07  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=30.6

Q ss_pred             cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Q 015657           45 SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT  105 (403)
Q Consensus        45 kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDt  105 (403)
                      ||++||=|+.   ....+...-...|..+.....       ..+++..+....||+||+|-
T Consensus         2 kILiVDDd~~---~~~~l~~~L~~~g~~v~~a~~-------~~eAl~~l~~~~~dlvilD~   52 (137)
T d1ny5a1           2 NVLVIEDDKV---FRGLLEEYLSMKGIKVESAER-------GKEAYKLLSEKHFNVVLLDL   52 (137)
T ss_dssp             EEEEECCCHH---HHHHHHHHHHHHTCEEEEESS-------HHHHHHHHHHSCCSEEEEES
T ss_pred             EEEEEecCHH---HHHHHHHHHHHCCCEEEEECC-------HHHHHHHhhccccccchHHH
Confidence            6889987733   333333333445666654432       23445555567899999995

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=82.02  E-value=1.4  Score=38.66  Aligned_cols=33  Identities=18%  Similarity=0.445  Sum_probs=26.0

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      .++++|+|- +|-|+.     +|..|+++|.+|.+++-+
T Consensus         5 gK~alITGas~GIG~a-----ia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           5 GEAVLITGGASGLGRA-----LVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECC
Confidence            467888876 887765     457888999999998855

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.97  E-value=0.38  Score=44.29  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             cccccCCCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657            7 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus         7 ~l~~~~~~~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      .+.|.  .+.+-+|+|+.||||||+..+|...|
T Consensus        19 ~i~f~--~~~l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          19 KVGFG--ESNFTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEECT--TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEeCC--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            34453  24567889999999999999998766

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.92  E-value=0.18  Score=43.81  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=24.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH--HHHHhCCCcE
Q 015657           16 TVILLAGLQGVGKTTVSAKLA--NYLKKQGKSC   46 (403)
Q Consensus        16 ~iI~v~G~gGsGKTTla~~LA--~~L~~~G~kV   46 (403)
                      ++++++|+..+||||+...++  .+|++-|.-|
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~v   68 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFV   68 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhcccee
Confidence            478999999999999987555  4667767544

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.50  E-value=2.7  Score=36.17  Aligned_cols=87  Identities=17%  Similarity=0.241  Sum_probs=49.9

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      .++++|+|- +|-|+.     +|..|+++|.+|.+++-+.   ...+.+.......+..+.....+....+.+...++.+
T Consensus         7 Gkv~lITGas~GIG~~-----ia~~la~~G~~V~l~~r~~---~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i   78 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRL-----TAYEFAKLKSKLVLWDINK---HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKV   78 (244)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH---HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH---HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence            478899987 888864     5577889999999988652   2222222222233333333333444445555555554


Q ss_pred             H--hCCCcEEEEeCCCCcc
Q 015657           94 K--KKNVDVVIVDTAGRLQ  110 (403)
Q Consensus        94 ~--~~~~D~VIIDtpg~l~  110 (403)
                      .  ....|++ |-++|...
T Consensus        79 ~~~~g~idil-innag~~~   96 (244)
T d1yb1a_          79 KAEIGDVSIL-VNNAGVVY   96 (244)
T ss_dssp             HHHTCCCSEE-EECCCCCC
T ss_pred             HHHcCCCcee-Eeeccccc
Confidence            3  2456664 56666543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=81.45  E-value=1.9  Score=34.32  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCC--CcEEEEeccCC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAGDVY   54 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G--~kVllVd~D~~   54 (403)
                      |.|+|.|.+|-|     +|..|+.+|  ..+.++|.|..
T Consensus         8 I~IIGaG~VG~~-----~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           8 VVLVGDGAVGSS-----YAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             EEEECCSHHHHH-----HHHHHHHHTCCSEEEEECSSHH
T ss_pred             EEEECCCHHHHH-----HHHHHHhcCCCcEEEEeecccc
Confidence            666788888855     345555555  57999998753

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.23  E-value=0.58  Score=47.40  Aligned_cols=30  Identities=33%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      .+....|+++|-+|||||+.+..+..+|+.
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL~~  117 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYLAV  117 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999999974

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.17  E-value=8.5  Score=29.33  Aligned_cols=69  Identities=14%  Similarity=0.113  Sum_probs=39.4

Q ss_pred             CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccccHHhHHHHHH
Q 015657           43 GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD  121 (403)
Q Consensus        43 G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg~l~~d~~l~~el~~  121 (403)
                      +.+|++||=|+.   ..+.+...-...|..+......       .++++.+....||+||+|.-..-...-.+...+.+
T Consensus         8 ~~~ILiVDD~~~---~~~~l~~~L~~~g~~v~~a~~g-------~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir~   76 (133)
T d2ayxa1           8 DMMILVVDDHPI---NRRLLADQLGSLGYQCKTANDG-------VDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQ   76 (133)
T ss_dssp             CCEEEEEESSHH---HHHHHHHHHHHHTSEEEEECCS-------HHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred             CCEEEEEECCHH---HHHHHHHHHHHcCCEEEEECcH-------HHHHHHHhccCceEEEEeccCCCCCHHHHHHHHHH
Confidence            578999997733   3333333344556666654332       23445555678999999974322223345555443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.01  E-value=4.7  Score=31.61  Aligned_cols=31  Identities=19%  Similarity=0.256  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           17 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        17 iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      -|++.|.|.+|.++     |.+|.++|++|.+++-+
T Consensus         4 ~IliiGaG~~G~~~-----a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           4 SVLMLGSGFVTRPT-----LDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             EEEEECCSTTHHHH-----HHHHHTTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHH-----HHHHHhCCCEEEEEECC
Confidence            46667999999874     46888999999999977

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.94  E-value=3.3  Score=34.86  Aligned_cols=39  Identities=21%  Similarity=0.115  Sum_probs=29.7

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccC
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV   53 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~   53 (403)
                      .+.++++++|+|.-|==-++  +|++|..+|++|.++-...
T Consensus        39 ~~~~vlvl~G~GNNGGDGl~--~Ar~L~~~g~~V~v~~~~~   77 (211)
T d2ax3a2          39 SDYRFLVLCGGGNNGGDGFV--VARNLLGVVKDVLVVFLGK   77 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHH--HHHHHTTTSSEEEEEECCS
T ss_pred             cCCcEEEEECCCCCchhHHH--HHHHHHhcCCeeEEEecCc
Confidence            35689999999776665554  6688889999998876543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=80.89  E-value=6.9  Score=30.76  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=22.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEecc
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD   52 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D   52 (403)
                      |.|.|.|-.|-     .||..|+++|++|...|-|
T Consensus         3 I~iIG~G~mG~-----~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           3 IGVVGLGLIGA-----SLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEECCSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred             EEEEeecHHHH-----HHHHHHHHCCCEEEEEECC
Confidence            67778876663     3667888999999887755

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.75  E-value=1.8  Score=37.35  Aligned_cols=86  Identities=21%  Similarity=0.302  Sum_probs=48.1

Q ss_pred             CEEEEEEcC-CCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHH
Q 015657           15 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA   93 (403)
Q Consensus        15 ~~iI~v~G~-gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~   93 (403)
                      -++++|+|- +|-|+.     +|..|++.|.+|.+++-+   +...+.+...-...+..+.....+....+.+.+.++.+
T Consensus        10 nKvalITGas~GIG~a-----~a~~la~~Ga~V~~~~r~---~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1          10 NKVALVTGAGRGIGRE-----IAKMLAKSVSHVICISRT---QKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             SCEEEEESTTSHHHHH-----HHHHHTTTSSEEEEEESS---HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECC---HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            478888876 777765     457888999999988855   22222222222233333333333444444455555544


Q ss_pred             H--hCCCcEEEEeCCCCc
Q 015657           94 K--KKNVDVVIVDTAGRL  109 (403)
Q Consensus        94 ~--~~~~D~VIIDtpg~l  109 (403)
                      .  ....|++|- ++|..
T Consensus        82 ~~~~g~iDilvn-nag~~   98 (251)
T d2c07a1          82 LTEHKNVDILVN-NAGIT   98 (251)
T ss_dssp             HHHCSCCCEEEE-CCCCC
T ss_pred             HHhcCCceeeee-ccccc
Confidence            2  256786665 55543

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=80.61  E-value=4.8  Score=30.21  Aligned_cols=55  Identities=22%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             CCcEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 015657           43 GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG  107 (403)
Q Consensus        43 G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtpg  107 (403)
                      .+||++||=|+   ...+.+...-+..|..+.....   +    .++++.+....||+||+|--.
T Consensus         2 ~krILiVDDd~---~~~~~l~~~L~~~g~~v~~a~~---~----~~al~~l~~~~~dlillD~~m   56 (121)
T d1mvoa_           2 NKKILVVDDEE---SIVTLLQYNLERSGYDVITASD---G----EEALKKAETEKPDLIVLDVML   56 (121)
T ss_dssp             CCEEEEECSCH---HHHHHHHHHHHHTTCEEEEESS---H----HHHHHHHHHHCCSEEEEESSC
T ss_pred             CCCEEEEECCH---HHHHHHHHHHHHCCCEEEEECC---H----HHHHHHHhcccccEEEecccc
Confidence            46899999773   3333333344456777665433   2    344455555689999999743

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.55  E-value=0.25  Score=43.89  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHH
Q 015657           15 PTVILLAGLQGVGKTTVSAKLANYL   39 (403)
Q Consensus        15 ~~iI~v~G~gGsGKTTla~~LA~~L   39 (403)
                      +.+-+++|+.||||||+..+|...|
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4577899999999999998887654

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=80.29  E-value=0.9  Score=40.46  Aligned_cols=37  Identities=22%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             CCCEEEEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Q 015657           13 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG   51 (403)
Q Consensus        13 ~~~~iI~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~   51 (403)
                      .+.++|.|+|..  ||||++.-|+..|...|++|.+...
T Consensus        37 ~~lkvI~VTGTN--GKtST~~~i~~IL~~~G~kvG~~tS   73 (296)
T d2gc6a2          37 QQGRYIHVTGTN--GKGSAANAIAHVLEASGLTVGLYTA   73 (296)
T ss_dssp             GSSCEEEEECSS--SHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             hhCCEEEEeccC--cHHHHHHHHHHHHHhcCCceeeeec
Confidence            356799999874  6999999999999999999987643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.26  E-value=2.3  Score=30.86  Aligned_cols=49  Identities=20%  Similarity=0.381  Sum_probs=34.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCcEEEEeccCCChhhHHHHHHhhhccCCceEeC
Q 015657           18 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA   76 (403)
Q Consensus        18 I~v~G~gGsGKTTla~~LA~~L~~~G~kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~   76 (403)
                      |-|+|-+|+|-|-+    |.+|.++|+.|.--|..  .+...+.|    +..|++++..
T Consensus         4 ihfiGIgG~GMs~L----A~~L~~~G~~VsGSD~~--~~~~t~~L----~~~Gi~i~~g   52 (89)
T d1j6ua1           4 IHFVGIGGIGMSAV----ALHEFSNGNDVYGSNIE--ETERTAYL----RKLGIPIFVP   52 (89)
T ss_dssp             EEEETTTSHHHHHH----HHHHHHTTCEEEEECSS--CCHHHHHH----HHTTCCEESS
T ss_pred             EEEEeECHHHHHHH----HHHHHhCCCeEEEEeCC--CChhHHHH----HHCCCeEEee
Confidence            56779999998886    58899999999877644  33333444    4567777643

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.04  E-value=0.63  Score=47.70  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=26.9

Q ss_pred             CCCCEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 015657           12 KSRPTVILLAGLQGVGKTTVSAKLANYLKK   41 (403)
Q Consensus        12 ~~~~~iI~v~G~gGsGKTTla~~LA~~L~~   41 (403)
                      .++...|+++|-+|||||+.+-.+..+|+.
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL~~  149 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYFAT  149 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999999975

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.04  E-value=7.7  Score=28.92  Aligned_cols=52  Identities=27%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             cEEEEeccCCChhhHHHHHHhhhccCCceEeCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 015657           45 SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTA  106 (403)
Q Consensus        45 kVllVd~D~~rp~~~~~l~~~~~~~gv~v~~~~~~~~~~~~~~~~l~~~~~~~~D~VIIDtp  106 (403)
                      +|++||-|+.   ..+.+...-...|..+.....   .    .++++.+....||+||+|--
T Consensus         2 nILiVDDd~~---~~~~l~~~L~~~g~~v~~a~~---~----~eal~~l~~~~~dliilD~~   53 (119)
T d1zh2a1           2 NVLIVEDEQA---IRRFLRTALEGDGMRVFEAET---L----QRGLLEAATRKPDLIILDLG   53 (119)
T ss_dssp             EEEEECSCHH---HHHHHHHHHHTTTCEEEEESS---H----HHHHHHHHHHCCSEEEEESE
T ss_pred             EEEEEECCHH---HHHHHHHHHHHCCCEEEEeCC---H----HHHHHHHHhcCCCEEEeccc
Confidence            5788887732   223333333445666665432   2    33445555568999999973