Citrus Sinensis ID: 015773

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
cccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHcccccccEEccEEEEEccHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHcccccccccHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
cccccccccccccccEEcccEEEccccccHHHHHHHHccccccHHHHHHHHHHHcccccHHHHcccEEccHHHHHHHHHHHccccEEEEcccccccccccHccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEEcHHHccccHHHHHHHHHHEEEccHEEEEEcccccccccEEEccHHHHcccccccccHHcccccccccEEEccccccccHHHHHHHHHHccccccHEHHHHHcHHcccccccccccccccEEEEcccHHHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccc
MDKNEEKQREEEREqvvspwevsssgkidydkLIDKFGCQRLDQSLVDRVQrltgrpphvflrrgvffahRDLNDILDAYEKGekfylytgrgpssealhlghlvpfmftnrylqdafkvplviqltddekcmwknLSVEESQRLARENAKDIIAcgfdvtktfifsdfdyvggafYKNMVKVAKCVTYNKVVGifgftgedhigkvsfppvqavpsfpssfphlfsgkdhlrclipcaidqdpyfrmtrdvaprigyhkpaliessffpalqgetgkmsasdpnsaiyvTDSAKAIKNKINKYAFSGGQESVELHRKLGanlevdipVKYLSFFLEDDAELEHIKKeygaggmltGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMavrplpnmfd
mdkneekqreeereqvvspwevsssgkiDYDKLIDKFGCQRLDQSLVDrvqrltgrpphvflrrgvffahrDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGEtgkmsasdpnsAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEygaggmltgEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
MDKNeekqreeereqVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVpsfpssfphlfsGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSakaiknkinkYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
*************************GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPAL***************IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV********
****************VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK***********HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ***********NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN***
************************SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
*************EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG*********PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN*FD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query400 2.2.26 [Sep-21-2011]
P23381471 Tryptophan--tRNA ligase, yes no 0.96 0.815 0.616 1e-146
Q5R4J1472 Tryptophan--tRNA ligase, yes no 0.96 0.813 0.616 1e-146
P23612475 Tryptophan--tRNA ligase, yes no 0.982 0.827 0.610 1e-146
Q6P7B0481 Tryptophan--tRNA ligase, yes no 0.977 0.812 0.618 1e-145
P17248476 Tryptophan--tRNA ligase, yes no 0.96 0.806 0.619 1e-145
P32921481 Tryptophan--tRNA ligase, yes no 0.98 0.814 0.609 1e-144
Q55DZ8400 Tryptophan--tRNA ligase, yes no 0.947 0.947 0.552 1e-129
Q09692395 Tryptophan--tRNA ligase, yes no 0.94 0.951 0.552 1e-125
Q12109432 Tryptophan--tRNA ligase, yes no 0.955 0.884 0.521 1e-117
O96771385 Tryptophan--tRNA ligase O yes no 0.935 0.971 0.459 1e-101
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2 Back     alignment and function desciption
 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 240/389 (61%), Positives = 307/389 (78%), Gaps = 5/389 (1%)

Query: 11  EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
           E  E  V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 79  EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFF 138

Query: 69  AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTD 128
           +HRD+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FT ++LQD F VPLVIQ+TD
Sbjct: 139 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTD 197

Query: 129 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKC 186
           DEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K 
Sbjct: 198 DEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKH 257

Query: 187 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 246
           VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCAIDQDPYF
Sbjct: 258 VTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 317

Query: 247 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 306
           RMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK K+NK+AF
Sbjct: 318 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAF 377

Query: 307 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKV 366
           SGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +V
Sbjct: 378 SGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEV 437

Query: 367 LTELVERHQVARAAVTDEMVDAFMAVRPL 395
           L  L+  HQ  R  VTDE+V  FM  R L
Sbjct: 438 LQPLIAEHQARRKEVTDEIVKEFMTPRKL 466
Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2 Back     alignment and function description
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3 Back     alignment and function description
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2 Back     alignment and function description
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3 Back     alignment and function description
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2 Back     alignment and function description
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1 Back     alignment and function description
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1 Back     alignment and function description
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_0530 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
449449024405 PREDICTED: tryptophan--tRNA ligase, cyto 0.997 0.985 0.879 0.0
225446410399 PREDICTED: tryptophanyl-tRNA synthetase, 0.962 0.964 0.899 0.0
297828964402 tRNA synthetase class I family protein [ 0.995 0.990 0.868 0.0
147832996399 hypothetical protein VITISV_027725 [Viti 0.962 0.964 0.894 0.0
224102881404 predicted protein [Populus trichocarpa] 0.992 0.982 0.86 0.0
255578670405 tryptophanyl-tRNA synthetase, putative [ 0.99 0.977 0.862 0.0
15229319402 tryptophanyl-tRNA synthetase [Arabidopsi 0.995 0.990 0.850 0.0
42572249402 tryptophanyl-tRNA synthetase [Arabidopsi 0.995 0.990 0.845 0.0
449523764389 PREDICTED: tryptophan--tRNA ligase, cyto 0.957 0.984 0.874 0.0
358344209401 Tryptophanyl-tRNA synthetase [Medicago t 0.99 0.987 0.831 0.0
>gi|449449024|ref|XP_004142265.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/406 (87%), Positives = 379/406 (93%), Gaps = 7/406 (1%)

Query: 1   MDKNEEKQREEER----EQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
           M+K E +++ EE     +QVV+PW+VS+   GKIDYDKLIDKFGCQRL  SLVDRVQRLT
Sbjct: 1   MEKAEAERKVEESVVEDDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLQPSLVDRVQRLT 60

Query: 55  GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYL 114
            RPPHVFLRRGVFFAHRD  +IL+AYE+GEKFYLYTGRGPSSEALHLGHLVPFMFT +YL
Sbjct: 61  SRPPHVFLRRGVFFAHRDFEEILNAYERGEKFYLYTGRGPSSEALHLGHLVPFMFT-KYL 119

Query: 115 QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 174
           QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDV+KTFIFSDFDY+GG
Sbjct: 120 QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVSKTFIFSDFDYIGG 179

Query: 175 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 234
           AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD LRC
Sbjct: 180 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDDLRC 239

Query: 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 294
           LIPCAIDQDPYFRMTRDVAPR+GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA
Sbjct: 240 LIPCAIDQDPYFRMTRDVAPRLGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 299

Query: 295 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 354
           K IKNKINKYAFSGGQ+S+E HR  GANLEVDIP KYL+FFL+DDAELEHI KEYGAG M
Sbjct: 300 KDIKNKINKYAFSGGQDSIEKHRLYGANLEVDIPTKYLNFFLDDDAELEHITKEYGAGRM 359

Query: 355 LTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMFD 400
           LTGEVKQRL +VLTE+VERH+ ARAAVTDEMVDAFMAVRPLPNMFD
Sbjct: 360 LTGEVKQRLIQVLTEMVERHRRARAAVTDEMVDAFMAVRPLPNMFD 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446410|ref|XP_002275626.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic [Vitis vinifera] gi|302143316|emb|CBI21877.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297828964|ref|XP_002882364.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata] gi|297328204|gb|EFH58623.1| tRNA synthetase class I family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147832996|emb|CAN66126.1| hypothetical protein VITISV_027725 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102881|ref|XP_002312840.1| predicted protein [Populus trichocarpa] gi|118482985|gb|ABK93404.1| unknown [Populus trichocarpa] gi|222849248|gb|EEE86795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255578670|ref|XP_002530195.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223530288|gb|EEF32185.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15229319|ref|NP_187110.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|145331754|ref|NP_001078104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|6175164|gb|AAF04890.1|AC011437_5 putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|110740619|dbj|BAE98413.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640582|gb|AEE74103.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640584|gb|AEE74105.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42572249|ref|NP_974219.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] gi|332640583|gb|AEE74104.1| tryptophanyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449523764|ref|XP_004168893.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|358344209|ref|XP_003636184.1| Tryptophanyl-tRNA synthetase [Medicago truncatula] gi|355502119|gb|AES83322.1| Tryptophanyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
TAIR|locus:2084993402 AT3G04600 [Arabidopsis thalian 0.96 0.955 0.819 4e-170
UNIPROTKB|F1SAP4482 WARS "Uncharacterized protein" 0.957 0.794 0.590 7.2e-123
UNIPROTKB|E2RGG9476 WARS "Uncharacterized protein" 0.945 0.794 0.592 5.1e-122
UNIPROTKB|P23381471 WARS "Tryptophan--tRNA ligase, 0.945 0.802 0.587 5.1e-122
RGD|1308278481 Wars "tryptophanyl-tRNA synthe 0.945 0.785 0.600 2.2e-121
UNIPROTKB|Q6P7B0481 Wars "Tryptophan--tRNA ligase, 0.945 0.785 0.600 2.2e-121
UNIPROTKB|P17248476 WARS "Tryptophan--tRNA ligase, 0.945 0.794 0.590 3.6e-121
MGI|MGI:104630481 Wars "tryptophanyl-tRNA synthe 0.945 0.785 0.592 1.2e-120
ZFIN|ZDB-GENE-040426-1742463 wars "tryptophanyl-tRNA synthe 0.945 0.816 0.584 3.2e-120
UNIPROTKB|E1C2Z5473 WARS "Uncharacterized protein" 0.947 0.801 0.565 2e-118
TAIR|locus:2084993 AT3G04600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1654 (587.3 bits), Expect = 4.0e-170, P = 4.0e-170
 Identities = 317/387 (81%), Positives = 344/387 (88%)

Query:    16 VVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
             VV+PWEVS+   GKIDYDKLIDKFGCQRLD+SL+DRVQRLT R PHVFLRR VFFAHRD 
Sbjct:    17 VVNPWEVSAKDGGKIDYDKLIDKFGCQRLDESLIDRVQRLTSRQPHVFLRRSVFFAHRDF 76

Query:    74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCM 133
             N+ILDAYE+G+KFYLYTGRGPSSEALHLGHL+PFMFT +YLQ+AFKVPLVIQLTDDEK +
Sbjct:    77 NEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFT-KYLQEAFKVPLVIQLTDDEKSI 135

Query:   134 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 193
             WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV KCVT NK +
Sbjct:   136 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVGKCVTLNKAM 195

Query:   194 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 253
             GIFGF+GED I K+SFPPVQAV            GKD+LRCLIPCAIDQDPYFRMTRDVA
Sbjct:   196 GIFGFSGEDPIAKLSFPPVQAVPSFPSSFPHLFPGKDNLRCLIPCAIDQDPYFRMTRDVA 255

Query:   254 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 313
             PR+GY KPALIES+FFPALQGE GKMSASDPNSAIYVTDS          YAFSGGQ+S+
Sbjct:   256 PRLGYSKPALIESTFFPALQGENGKMSASDPNSAIYVTDSAKDIKNKINRYAFSGGQDSI 315

Query:   314 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 373
             E HR+LGANLEVDIPVKYLSFFLEDD+ELEHIKKEYG G MLTGEVK+RL +VLTE+VER
Sbjct:   316 EKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKEYGEGRMLTGEVKKRLTEVLTEIVER 375

Query:   374 HQVARAAVTDEMVDAFMAVRPLPNMFD 400
             H+ ARAAVTDEMVDAFMAVRPLP+MF+
Sbjct:   376 HRRARAAVTDEMVDAFMAVRPLPSMFE 402
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=ISS;IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
UNIPROTKB|F1SAP4 WARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGG9 WARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308278 Wars "tryptophanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7B0 Wars "Tryptophan--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P17248 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:104630 Wars "tryptophanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1742 wars "tryptophanyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Z5 WARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6P7B0SYWC_RAT6, ., 1, ., 1, ., 20.61860.97750.8128yesno
P23381SYWC_HUMAN6, ., 1, ., 1, ., 20.61690.960.8152yesno
P17248SYWC_BOVIN6, ., 1, ., 1, ., 20.61950.960.8067yesno
P32921SYWC_MOUSE6, ., 1, ., 1, ., 20.60950.980.8149yesno
Q5JEP3SYW_PYRKO6, ., 1, ., 1, ., 20.41480.8650.9010yesno
B6YUH1SYW_THEON6, ., 1, ., 1, ., 20.42030.8650.9010yesno
Q8U453SYW_PYRFU6, ., 1, ., 1, ., 20.43420.90250.9376yesno
O96771SYW_ENCCU6, ., 1, ., 1, ., 20.45970.9350.9714yesno
Q12109SYWC_YEAST6, ., 1, ., 1, ., 20.52170.9550.8842yesno
Q55DZ8SYWC_DICDI6, ., 1, ., 1, ., 20.55290.94750.9475yesno
P23612SYWC_RABIT6, ., 1, ., 1, ., 20.61050.98250.8273yesno
C6A032SYW_THESM6, ., 1, ., 1, ., 20.41280.87750.9140yesno
A3MX72SYW_PYRCJ6, ., 1, ., 1, ., 20.42480.91250.9759yesno
Q9HN66SYW2_HALSA6, ., 1, ., 1, ., 20.37560.8750.9210yesno
Q97ZX0SYW_SULSO6, ., 1, ., 1, ., 20.46940.8550.9yesno
Q976M1SYW_SULTO6, ., 1, ., 1, ., 20.44260.89250.9370yesno
Q09692SYWC_SCHPO6, ., 1, ., 1, ., 20.55200.940.9518yesno
A2BLD4SYW_HYPBU6, ., 1, ., 1, ., 20.30050.8550.9168yesno
A4WL99SYW_PYRAR6, ., 1, ., 1, ., 20.40860.88250.9438yesno
Q8ZTU5SYW_PYRAE6, ., 1, ., 1, ., 20.40150.89250.952yesno
Q58810SYW_METJA6, ., 1, ., 1, ., 20.3040.85250.9216yesno
O59584SYW_PYRHO6, ., 1, ., 1, ., 20.41330.890.9222yesno
Q5R4J1SYWC_PONAB6, ., 1, ., 1, ., 20.61690.960.8135yesno
Q9UY11SYW_PYRAB6, ., 1, ., 1, ., 20.40970.88250.9168yesno
Q4JBG7SYW_SULAC6, ., 1, ., 1, ., 20.46540.8950.9396yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.20.946
3rd Layer6.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
PLN02486383 PLN02486, PLN02486, aminoacyl-tRNA ligase 0.0
PRK12285368 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; 1e-118
TIGR00233327 TIGR00233, trpS, tryptophanyl-tRNA synthetase 7e-97
cd00806280 cd00806, TrpRS_core, catalytic core domain of tryp 4e-96
COG0180314 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans 4e-75
pfam00579291 pfam00579, tRNA-synt_1b, tRNA synthetases class I 5e-22
PRK08560329 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid 5e-22
PRK00927333 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; 6e-12
cd00805269 cd00805, TyrRS_core, catalytic core domain of tyro 3e-11
PRK12282333 PRK12282, PRK12282, tryptophanyl-tRNA synthetase I 9e-11
COG0162401 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translatio 2e-08
TIGR00234377 TIGR00234, tyrS, tyrosyl-tRNA synthetase 5e-06
PTZ00126383 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provi 9e-06
cd00395273 cd00395, Tyr_Trp_RS_core, catalytic core domain of 8e-04
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score =  793 bits (2050), Expect = 0.0
 Identities = 332/384 (86%), Positives = 359/384 (93%), Gaps = 3/384 (0%)

Query: 15  QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
           QVV+PWEVS+   GKIDYDKL+DKFGCQRLD SL+DRV+RLTGRP H FLRRGVFFAHRD
Sbjct: 1   QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRD 60

Query: 73  LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKC 132
           L +ILDAYEKGEKFYLYTGRGPSSEALHLGHL+PFMFT +YLQDAFKVPLVIQLTDDEK 
Sbjct: 61  LEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFT-KYLQDAFKVPLVIQLTDDEKF 119

Query: 133 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV 192
           +WKNLSVEESQRLARENAKDIIACGFDV +TFIFSDFDYVGGAFYKNMVK+AKCVT N+V
Sbjct: 120 LWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVTLNQV 179

Query: 193 VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 252
            GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF GKD LRCLIPCAIDQDPYFRMTRDV
Sbjct: 180 RGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDV 239

Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 312
           APR+GY+KPALIES FFPALQGE+GKMSASDPNSAIYVTD+ K IKNKINKYAFSGGQ++
Sbjct: 240 APRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDT 299

Query: 313 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
           VE HR+LGANLEVDIP KYL+FFLEDDAELE IKKEYG+G MLTGEVK+RL +VLTE+VE
Sbjct: 300 VEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVE 359

Query: 373 RHQVARAAVTDEMVDAFMAVRPLP 396
           RHQ ARAAVTDEMVDAFMAVRPLP
Sbjct: 360 RHQRARAAVTDEMVDAFMAVRPLP 383

Length = 383
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) Back     alignment and domain information
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 400
KOG2145397 consensus Cytoplasmic tryptophanyl-tRNA synthetase 100.0
PLN02486383 aminoacyl-tRNA ligase 100.0
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 100.0
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 100.0
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 100.0
PRK08560329 tyrosyl-tRNA synthetase; Validated 100.0
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 100.0
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 100.0
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 100.0
PLN02886389 aminoacyl-tRNA ligase 100.0
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 100.0
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 100.0
PRK12284 431 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK13354410 tyrosyl-tRNA synthetase; Provisional 100.0
PRK05912408 tyrosyl-tRNA synthetase; Validated 100.0
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 100.0
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 100.0
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 100.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 100.0
KOG2713347 consensus Mitochondrial tryptophanyl-tRNA syntheta 100.0
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 100.0
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 100.0
KOG2144360 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr 100.0
KOG2623467 consensus Tyrosyl-tRNA synthetase [Translation, ri 100.0
PTZ00348682 tyrosyl-tRNA synthetase; Provisional 100.0
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.4
cd00808239 GluRS_core catalytic core domain of discriminating 99.32
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 99.05
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.89
cd00674353 LysRS_core_class_I catalytic core domain of class 98.82
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 98.36
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.93
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 97.85
cd09287240 GluRS_non_core catalytic core domain of non-discri 97.79
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 97.69
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 97.61
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.56
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 97.52
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 97.43
PLN02627 535 glutamyl-tRNA synthetase 97.41
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 97.4
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 97.39
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 97.38
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 97.33
PRK12410 433 glutamylglutaminyl-tRNA synthetase; Provisional 97.15
PLN03233 523 putative glutamate-tRNA ligase; Provisional 97.1
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 97.06
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 97.0
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 97.0
PLN02907 722 glutamate-tRNA ligase 96.83
PRK12558445 glutamyl-tRNA synthetase; Provisional 96.79
COG0215 464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 96.75
PLN02859 788 glutamine-tRNA ligase 96.53
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 96.48
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 96.25
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 96.1
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 94.44
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 94.39
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 93.69
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 93.48
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 93.23
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 92.94
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 92.79
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 91.83
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 91.75
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 89.8
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 89.51
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 89.47
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 89.25
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 88.8
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 88.67
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 88.62
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 87.41
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 87.21
PLN02224 616 methionine-tRNA ligase 86.49
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 86.45
PRK11893511 methionyl-tRNA synthetase; Reviewed 86.35
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 86.3
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 84.48
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 83.93
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 83.82
PRK12451562 arginyl-tRNA synthetase; Reviewed 83.72
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 83.1
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 82.44
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 82.39
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 81.44
PLN02843 974 isoleucyl-tRNA synthetase 81.07
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 80.74
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 80.37
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=7e-119  Score=841.37  Aligned_cols=389  Identities=65%  Similarity=1.143  Sum_probs=382.0

Q ss_pred             hhhhccccccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCc
Q 015773            8 QREEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK   85 (400)
Q Consensus         8 ~~~~~~~~~~~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~   85 (400)
                      ..+|.+|+.||||+|++  ..+|||||||.+|||++|++++++|++++||+++|+|+|||+||+|||++.||+++++|+|
T Consensus         6 ~~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kp   85 (397)
T KOG2145|consen    6 GATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKP   85 (397)
T ss_pred             cccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCc
Confidence            34677899999999987  6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773           86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI  165 (400)
Q Consensus        86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i  165 (400)
                      ||+|||++||+++|||||++|++++ +|||++|++|++|+++|+++++++.++.|+..+++++|+++|+||||||++|+|
T Consensus        86 FyLYTGRGpSS~smHlGHliPFift-KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfI  164 (397)
T KOG2145|consen   86 FYLYTGRGPSSESMHLGHLIPFIFT-KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFI  164 (397)
T ss_pred             eEEEeCCCCCccccccccchhHHHH-HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEE
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             Eecccccc-cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchh
Q 015773          166 FSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP  244 (400)
Q Consensus       166 ~~~s~~~~-~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~  244 (400)
                      |+|.++++ +.+|.+++++++++|+|+.+++|||+++.++|++.+|..|||+||++|||.|+....|++|+|||++||||
T Consensus       165 Fsn~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDP  244 (397)
T KOG2145|consen  165 FSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDP  244 (397)
T ss_pred             EechhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCCh
Confidence            99999997 49999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcc
Q 015773          245 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE  324 (400)
Q Consensus       245 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~  324 (400)
                      |+|||||+|+|+|++||+.+|+.++|.|+|++.|||.|+|||+|||+|++++|++||++|||+||+.|+|+||++||||+
T Consensus       245 yFRmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~d  324 (397)
T KOG2145|consen  245 YFRMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPD  324 (397)
T ss_pred             HHHhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCC
Q 015773          325 VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN  397 (400)
Q Consensus       325 v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (400)
                      |||+|+||+||.+|+.++|+++.+|.+|+|.+||+|+.|++.|++++..+|++|++++++.|++||..|+|+|
T Consensus       325 VDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~~  397 (397)
T KOG2145|consen  325 VDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLSF  397 (397)
T ss_pred             ceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986

>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
2quh_A477 Crystal Structures Of Human Tryptophanyl-Trna Synth 1e-135
1ulh_A390 A Short Peptide Insertion Crucial For Angiostatic A 1e-134
1o5t_A378 Crystal Structure Of The Aminoacylation Catalytic F 1e-132
2ake_A384 Structure Of Human Tryptophanyl-Trna Synthetase In 1e-132
2quj_B384 Crystal Structures Of Human Tryptophanyl-Trna Synth 1e-132
1r6t_A477 Crystal Structure Of Human Tryptophanyl-Trna Synthe 1e-130
2azx_A477 Charged And Uncharged Trnas Adopt Distinct Conforma 1e-130
1r6u_A437 Crystal Structure Of An Active Fragment Of Human Tr 1e-129
3hv0_A393 Tryptophanyl-Trna Synthetase From Cryptosporidium P 1e-112
3i05_A395 Tryptophanyl-Trna Synthetase From Trypanosoma Bruce 1e-111
3kt0_A438 Crystal Structure Of S. Cerevisiae Tryptophanyl-Trn 1e-106
2ip1_A432 Crystal Structure Analysis Of S. Cerevisiae Tryptop 1e-106
3tze_A406 Crystal Structure Of A Tryptophanyl-Trna Synthetase 9e-95
3foc_A451 Tryptophanyl-Trna Synthetase From Giardia Lamblia L 6e-76
3jxe_A392 Crystal Structure Of Pyrococcus Horikoshii Tryptoph 9e-73
3hzr_A386 Tryptophanyl-Trna Synthetase Homolog From Entamoeba 3e-47
3a04_A372 Crystal Structure Of Tryptophanyl-Trna Synthetase F 6e-28
2cyb_A323 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 5e-07
1jii_A420 Crystal Structure Of S. Aureus Tyrrs In Complex Wit 2e-04
1yi8_B351 Crystal Structure Of Tryptophanyl Trrna Synthetase 3e-04
2a4m_A331 Structure Of Trprs Ii Bound To Atp Length = 331 3e-04
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase In Complex With Trp Length = 477 Back     alignment and structure 
Iteration: 1

 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/383 (58%), Positives = 288/383 (75%), Gaps = 5/383 (1%)
Query: 17  VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
           V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 85  VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 144
Query: 75  DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMW 134
            +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+FT ++LQD F VPLVIQ+TDDEK +W
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLW 203
Query: 135 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKV 192
           K+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K VT+N+V
Sbjct: 204 KDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQV 263
Query: 193 VGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDV 252
            GIFGFT  D IGK+SFP +QA              +  ++CLIPCAIDQDPYFRMTRDV
Sbjct: 264 KGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 323
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQES 312
           APRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+          +AFSGG+++
Sbjct: 324 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDT 383
Query: 313 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
           +E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL  L+ 
Sbjct: 384 IEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIA 443
Query: 373 RHQVARAAVTDEMVDAFMAVRPL 395
            HQ  R  VTDE+V  FM  R L
Sbjct: 444 EHQARRKEVTDEIVKEFMTPRKL 466
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity Of Human Tryptophanyl-Trna Synthetase Length = 390 Back     alignment and structure
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment Of Human Tryptophanyl-Trna Synthetase Length = 378 Back     alignment and structure
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex With Trna(Trp) Length = 384 Back     alignment and structure
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase Length = 477 Back     alignment and structure
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations When Complexed With Human Tryptophanyl-Trna Synthetase Length = 477 Back     alignment and structure
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human Tryptophanyl-Trna Synthetase With Cytokine Activity Length = 437 Back     alignment and structure
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum Length = 393 Back     alignment and structure
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei Length = 395 Back     alignment and structure
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna Synthet Length = 438 Back     alignment and structure
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl Trna Synthetase Length = 432 Back     alignment and structure
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From Encephalitozoon Cuniculi Bound To Tryptophan Length = 406 Back     alignment and structure
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia Length = 451 Back     alignment and structure
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Tryptophanyl-Trna Synthetase In Complex With Trpamp Length = 392 Back     alignment and structure
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba Histolytica Length = 386 Back     alignment and structure
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372 Back     alignment and structure
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 Back     alignment and structure
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-219383 Length = 420 Back     alignment and structure
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From Deinococcus Radiodurans In Complex With L-Trp Length = 351 Back     alignment and structure
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 1e-175
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 1e-174
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 1e-173
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 1e-173
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 1e-167
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 1e-164
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 1e-162
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 1e-159
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 1e-146
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 1e-89
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 4e-31
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 5e-30
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 2e-25
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 5e-20
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 2e-23
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 9e-23
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 4e-17
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 6e-16
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 2e-14
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 4e-13
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 9e-13
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 1e-10
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 2e-07
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 2e-06
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 3e-06
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 3e-06
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 4e-06
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 7e-04
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Back     alignment and structure
 Score =  493 bits (1271), Expect = e-175
 Identities = 241/400 (60%), Positives = 308/400 (77%), Gaps = 5/400 (1%)

Query: 4   NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
           N      E  E  V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH F
Sbjct: 25  NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84

Query: 62  LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVP 121
           LRRG+FF+HRD+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+F  ++LQD F VP
Sbjct: 85  LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVP 143

Query: 122 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKN 179
           LVIQ+TDDEK +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN
Sbjct: 144 LVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKN 203

Query: 180 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 239
           +VK+ K VT+N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCA
Sbjct: 204 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 263

Query: 240 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 299
           IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK 
Sbjct: 264 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 323

Query: 300 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 359
           K+NK+AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 324 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 383

Query: 360 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 399
           K+ L +VL  L+  HQ  R  VTDE+V  FM  R L   F
Sbjct: 384 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348 Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375 Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314 Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322 Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341 Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328 Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Length = 392 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 100.0
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 100.0
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 100.0
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 100.0
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 100.0
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 100.0
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 100.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 100.0
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 100.0
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 100.0
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 100.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 100.0
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 100.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 100.0
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 100.0
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 100.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 100.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 100.0
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 100.0
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 100.0
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 100.0
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 100.0
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 100.0
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 100.0
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 100.0
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 98.67
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 98.66
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 98.56
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 98.53
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.43
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 98.19
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 97.83
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 97.71
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 97.46
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 97.42
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 97.27
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 96.58
3tqo_A 462 Cysteinyl-tRNA synthetase; protein synthesis, liga 95.77
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 94.5
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 93.54
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 92.51
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 91.08
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 90.86
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 89.99
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 87.68
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 87.29
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 86.57
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 85.51
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 85.27
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 84.88
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 84.35
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 83.24
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 82.17
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 80.86
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
Probab=100.00  E-value=5.7e-103  Score=790.57  Aligned_cols=381  Identities=45%  Similarity=0.868  Sum_probs=345.1

Q ss_pred             hhccccccccCCccC------CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhC
Q 015773           10 EEEREQVVSPWEVSS------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG   83 (400)
Q Consensus        10 ~~~~~~~~~pw~~~~------~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g   83 (400)
                      .++.++.||||+|++      ++.|||+|||++||++|||+++++||+++||+++|+|++||+||+|+|++++++++++|
T Consensus        20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~   99 (406)
T 3tze_A           20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN   99 (406)
T ss_dssp             --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred             CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence            455799999999986      23699999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015773           84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT  163 (400)
Q Consensus        84 ~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt  163 (400)
                      +|+++|+||+|||++|||||++|++++ +|||+++|++++|+|||+||+++++++++++++|+++++++|+|||+||+++
T Consensus       100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~-~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~  178 (406)
T 3tze_A          100 RPFYLYTGRGPSSKTMHIGHTIPFLLC-KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLT  178 (406)
T ss_dssp             CCEEEEEEECCCSSCCBGGGHHHHHHH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred             CCeEEEEeeCCCCCcccHHHHHHHHHH-HHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence            999999999999988999999999988 9999999999999999999998888999999999999999999999999999


Q ss_pred             EEEecccccccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCch
Q 015773          164 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQD  243 (400)
Q Consensus       164 ~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd  243 (400)
                      +||+||+|.+ .+|.++++|+|++|++++++++||++++|+|+|+||+|||||+|+++||+|+.+.   .|+||||.||+
T Consensus       179 ~i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~---a~lvpvG~DQ~  254 (406)
T 3tze_A          179 YIFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQD  254 (406)
T ss_dssp             EEEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTC---EEEEEEEGGGH
T ss_pred             EEEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCC---CeEEeeccchH
Confidence            9999999985 8899999999999999999999998999999999999999999999999987644   48999999999


Q ss_pred             hHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCc
Q 015773          244 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL  323 (400)
Q Consensus       244 ~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p  323 (400)
                      ||+++|||+|+|+|+++|.++++++||+|+|+++|||||.|||+|||+|+|++|++||++|||||++.+++++++.||||
T Consensus       255 ~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p  334 (406)
T 3tze_A          255 PFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDI  334 (406)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCG
T ss_pred             HHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCC
Confidence            99999999999999999999999999999997679999998889999999999999999999999999999999999999


Q ss_pred             ccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015773          324 EVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL  395 (400)
Q Consensus       324 ~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  395 (400)
                      ++|++++|+++|+.+++++++|+++|++|+++|++||+.||+.|+++|+|+|+||++++++.|++||..|++
T Consensus       335 ~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  406 (406)
T 3tze_A          335 DVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF  406 (406)
T ss_dssp             GGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred             cccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence            999999999999878899999999999999999999999999999999999999999999999999999875
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 400
d1r6ta2386 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase ( 1e-122
d2ts1a_319 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bac 2e-35
d1n3la_339 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum 3e-33
d1jila_323 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Sta 5e-28
d1h3fa1343 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) 2e-25
d1j1ua_306 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc 6e-23
d1i6la_326 c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) 6e-18
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  355 bits (913), Expect = e-122
 Identities = 238/386 (61%), Positives = 305/386 (79%), Gaps = 5/386 (1%)

Query: 14  EQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
           E  V PW V  SS+  IDYDKLI +FG  ++D+ L++R++R TG+ PH FLRRG+FF+HR
Sbjct: 1   EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60

Query: 72  DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEK 131
           D+N +LDAYE  + FYLYTGRGPSSEA+H+GHL+PF+F  ++LQD F VPLVIQ+TDDEK
Sbjct: 61  DMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVPLVIQMTDDEK 119

Query: 132 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTY 189
            +WK+L+++++   A ENAKDIIACGFD+ KTFIFSD DY+G    FYKN+VK+ K VT+
Sbjct: 120 YLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTF 179

Query: 190 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 249
           N+V GIFGFT  D IGK+SFP +QA PSF +SFP +F  +  ++CLIPCAIDQDPYFRMT
Sbjct: 180 NQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMT 239

Query: 250 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 309
           RDVAPRIGY KPAL+ S+FFPALQG   KMSASDPNS+I++TD+AK IK K+NK+AFSGG
Sbjct: 240 RDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGG 299

Query: 310 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 369
           ++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL  
Sbjct: 300 RDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQP 359

Query: 370 LVERHQVARAAVTDEMVDAFMAVRPL 395
           L+  HQ  R  VTDE+V  FM  R L
Sbjct: 360 LIAEHQARRKEVTDEIVKEFMTPRKL 385
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 319 Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 323 Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343 Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306 Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 100.0
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 100.0
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 100.0
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 100.0
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 100.0
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 100.0
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 100.0
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 97.84
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 97.58
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 95.83
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 94.41
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 93.34
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 93.27
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 92.95
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 92.83
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 91.5
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 90.84
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 90.36
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 89.2
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 84.98
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 81.73
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-103  Score=786.55  Aligned_cols=382  Identities=62%  Similarity=1.114  Sum_probs=367.7

Q ss_pred             ccccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEee
Q 015773           14 EQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG   91 (400)
Q Consensus        14 ~~~~~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG   91 (400)
                      |+.||||+|++  .+.|||+||+++||++|||+++++|++++||+++|+|+|||+||+|||++.|++++++|+|+++|||
T Consensus         1 ~~~~~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~rRg~~f~hrd~~~il~~~~~gkp~~vytG   80 (386)
T d1r6ta2           1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG   80 (386)
T ss_dssp             CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE
T ss_pred             CCccCcccccCCCcccccHHHHHHHhCCCcCCHHHHHHHHHhccCCcchhhhcceeeeccCHHHHHHHHHcCCCeEEEec
Confidence            68899999977  4569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 015773           92 RGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY  171 (400)
Q Consensus        92 ~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~  171 (400)
                      |+|||++|||||++|++++ +|+|+++|++++|+|||+||++++.++++++++++.+++++++||||||++++||+||+|
T Consensus        81 ~~PSg~~lHlGh~v~~~~~-~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~  159 (386)
T d1r6ta2          81 RGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDY  159 (386)
T ss_dssp             ECCCTTCCBGGGHHHHHHH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHH
T ss_pred             cCCCCchhHHHHHHHHHHH-HHHHHhcccceEEEecchHhhhcccCCHHHHHHHHHHHHHHHHHhCCCccceEEEeCcHH
Confidence            9999977999999999999 999998999999999999999988899999999999999999999999999999999999


Q ss_pred             cc--cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHH
Q 015773          172 VG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT  249 (400)
Q Consensus       172 ~~--~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~  249 (400)
                      .+  .++|.+++++++++|++++++++|+.+++|+|+|+||+|||||+|+.+++.++..+.+.+|+||||.||+||+++|
T Consensus       160 ~~~l~~~~~~~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~lt  239 (386)
T d1r6ta2         160 MGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMT  239 (386)
T ss_dssp             GGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHhhccccCCcCcccccHHHHHHHHHHhcChhhhccccccccccccchhHHHHHHHH
Confidence            85  3578899999999999999999999999999999999999999999999988888888999999999999999999


Q ss_pred             HHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHH
Q 015773          250 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV  329 (400)
Q Consensus       250 rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~  329 (400)
                      ||+|+|+|+++|++++++++|+|+|+++|||||.|||+|||+|+|++|++||++++++++..+.+++++.||||++|++|
T Consensus       240 RDia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~~~~~~~~~~~~e~~~~~g~~~~~v~~  319 (386)
T d1r6ta2         240 RDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSF  319 (386)
T ss_dssp             HHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHH
T ss_pred             HHHHHHhCCCCceeeccccccCCCCcccccccCCCCceeeecCCHHHHHHHhhheeeecCCcccccccccCCCcchhHHH
Confidence            99999999999999999999999998789999999999999999999999999977778889999999999999999999


Q ss_pred             HHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCC
Q 015773          330 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP  396 (400)
Q Consensus       330 ~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  396 (400)
                      .|+.+|..+++++++|+++|.+|+++|++||+.||+.|+++|+++|++|++++++.|++||..+||.
T Consensus       320 ~~l~~f~~d~~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl~  386 (386)
T d1r6ta2         320 MYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA  386 (386)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred             HHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9999998899999999999999999999999999999999999999999999999999999999874
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure