Citrus Sinensis ID: 016469

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA
cccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEccccccccccccEEEEEEEEEcccEEEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcEEEEEEEEEEEHHHHHHHccccccccEEEEEccccccHHHHHHHcccccccccccccccccEEEEEEEEEEccccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEHHHHccccccccccccEEEEEccccccccccccHHHHHHccccccc
ccccccccccccccccccHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcEEEEEEEccHHHccccccccccEEEEEEccccHHHHHHHHHHHHcccccHHHHcccccEEEEEEEcccccEEcHHHHHccccccHHHHHcccEEEEEcccccccEEEEEcccccccccccEccccEEEEEcccccccccccccccccccccccccccccccEEcccEEEEEccccccccEEEEEcHHccccccccccccEEEEEEEccccccccccccHHHHHHHHccccc
mshrkfehprhgslgflprkrasrhrgkvkafpkddpskpcrltaflgykAGMTHIVRdvekpgsklhkketceavtiietpplVVVGVVgyvktprgLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKkyetddgkKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAygffekqipidavfqkdemiDIIGvtkgkgyegvvtrwgvtrlprkthrgLRKVACIGAWHPARVSFTVAragqngyhhrteMNKKIYKLGKASqeshsamtefdrtekditpmggfphygvvnedyllikgccvgpkkRVVTLRQSLLKQTSRLALEEIKLKFidtsskfghgrfQTTQEKAKYYGRLKA
mshrkfehprhgslgflprkrasrhrgkvkafpkddpskpcRLTAFLGYKAGMTHIVrdvekpgsklhKKETCeavtiietpplvvVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRrfyknwckskkkaftkytkkyetddgkkDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGvtkgkgyegvvtrwgvtrlprkthrglrKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLkfidtsskfghgrfqttqekakyygrlka
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLvvvgvvgyvKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCkskkkaftkytkkyETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA
****************************************CRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETD***KDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE***KIY**********************ITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHG*****************
******E*PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNW**************YE**DG*KDI*AQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWG****************CIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRL**
**********HGSLGFLPRK****************PSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG************FDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA
***************************KVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA*******MTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSS**********************
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MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
P35684389 60S ribosomal protein L3 yes no 1.0 1.0 0.871 0.0
P22738390 60S ribosomal protein L3- yes no 0.992 0.989 0.886 0.0
P17094389 60S ribosomal protein L3- no no 0.994 0.994 0.868 0.0
P39023403 60S ribosomal protein L3 yes no 0.994 0.960 0.682 1e-161
P21531403 60S ribosomal protein L3 yes no 0.994 0.960 0.680 1e-160
P27659403 60S ribosomal protein L3 yes no 0.994 0.960 0.677 1e-160
P39872403 60S ribosomal protein L3 yes no 0.994 0.960 0.672 1e-159
Q4R5Q0403 60S ribosomal protein L3 N/A no 0.994 0.960 0.677 1e-158
P49149402 60S ribosomal protein L3 N/A no 0.994 0.962 0.664 1e-158
Q8NKF4392 60S ribosomal protein L3 yes no 0.989 0.982 0.690 1e-158
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2 Back     alignment and function desciption
 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/389 (87%), Positives = 371/389 (95%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+V
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           EKPGSKLHKKETCEAVTIIETPPLV+VG+V YVKTPRGLRSL +VWAQHL+EEVRRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
           NWCKSKKKAFTKY  KY++D GKK+IQ QLEKMKKY +++RV+AHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180

Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           LMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
           LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+YK+GK+ QESH+A T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300

Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
           EFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360

Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389
           KFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct: 361 KFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
The L3 protein is a component of the large subunit of cytoplasmic ribosomes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4 Back     alignment and function description
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5 Back     alignment and function description
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2 Back     alignment and function description
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3 Back     alignment and function description
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3 Back     alignment and function description
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2 Back     alignment and function description
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3 Back     alignment and function description
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2 Back     alignment and function description
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rpl3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
147833564389 hypothetical protein VITISV_039858 [Viti 1.0 1.0 0.912 0.0
225460636397 PREDICTED: 60S ribosomal protein L3-like 1.0 0.979 0.912 0.0
296081197449 unnamed protein product [Vitis vinifera] 1.0 0.866 0.912 0.0
313586459389 60S ribosomal protein L3B [Hevea brasili 1.0 1.0 0.915 0.0
350539715389 ribosomal protein L3 [Solanum lycopersic 1.0 1.0 0.915 0.0
255566636389 60S ribosomal protein L3, putative [Rici 1.0 1.0 0.915 0.0
313586457389 60S ribosomal protein L3A [Hevea brasili 1.0 1.0 0.912 0.0
37625023389 ribosomal protein L3A [Nicotiana tabacum 1.0 1.0 0.910 0.0
359486157389 PREDICTED: 60S ribosomal protein L3 [Vit 1.0 1.0 0.933 0.0
82623411389 ribosomal protein L3-like [Solanum tuber 1.0 1.0 0.910 0.0
>gi|147833564|emb|CAN63848.1| hypothetical protein VITISV_039858 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/389 (91%), Positives = 381/389 (97%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR+V
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVREV 60

Query: 61  EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           EKPGSKLHKKETCEAVTI+ETPP+V+VGVV YVKTPRGLRSL TVWAQHL+EEV+RRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSEEVKRRFYK 120

Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
           NWCKSKKKAFTKY+K+YET++GKK IQAQLEKMKKY +VIRVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIRKMKGLKQKKAH 180

Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           LMEIQVNGG++AQKVD+AYGFFEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQVNGGTIAQKVDYAYGFFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
           LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK  QESH+A+T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKIEQESHTALT 300

Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
           EFDRTEKDITPMGGFPHYGVV +DY++IKGCCVGPKKRVVTLRQSLLKQTSR+ALEEIKL
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRVVTLRQSLLKQTSRVALEEIKL 360

Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389
           KFIDTSSKFGHGRFQTTQEK K+YGR+KA
Sbjct: 361 KFIDTSSKFGHGRFQTTQEKQKFYGRMKA 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460636|ref|XP_002265125.1| PREDICTED: 60S ribosomal protein L3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081197|emb|CBI18223.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|313586459|gb|ADR71240.1| 60S ribosomal protein L3B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|350539715|ref|NP_001233997.1| ribosomal protein L3 [Solanum lycopersicum] gi|38327504|gb|AAR17783.1| ribosomal protein L3 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|255566636|ref|XP_002524302.1| 60S ribosomal protein L3, putative [Ricinus communis] gi|223536393|gb|EEF38042.1| 60S ribosomal protein L3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|313586457|gb|ADR71239.1| 60S ribosomal protein L3A [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|37625023|gb|AAQ96335.1| ribosomal protein L3A [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|359486157|ref|XP_002263053.2| PREDICTED: 60S ribosomal protein L3 [Vitis vinifera] gi|297739519|emb|CBI29701.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|82623411|gb|ABB87120.1| ribosomal protein L3-like [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2200873390 RPL3B "R-protein L3 B" [Arabid 1.0 0.997 0.830 6.8e-182
TAIR|locus:2018605389 RP1 "ribosomal protein 1" [Ara 0.994 0.994 0.819 5.1e-177
UNIPROTKB|F1NEM8403 RPL3 "Uncharacterized protein" 0.992 0.957 0.631 4.1e-136
UNIPROTKB|F1NLW1402 RPL3 "Uncharacterized protein" 0.992 0.960 0.631 4.1e-136
UNIPROTKB|P39023403 RPL3 "60S ribosomal protein L3 0.994 0.960 0.631 6.7e-136
RGD|735105403 Rpl3 "ribosomal protein L3" [R 0.994 0.960 0.629 1.4e-135
UNIPROTKB|J9P6X5403 RPL3 "Uncharacterized protein" 0.994 0.960 0.626 3.7e-135
UNIPROTKB|F1SNY2403 RPL3 "60S ribosomal protein L3 0.994 0.960 0.626 4.7e-135
UNIPROTKB|F1PLN2403 RPL3 "Uncharacterized protein" 0.992 0.957 0.628 6e-135
MGI|MGI:1351605403 Rpl3 "ribosomal protein L3" [M 0.994 0.960 0.626 9.8e-135
TAIR|locus:2200873 RPL3B "R-protein L3 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
 Identities = 324/390 (83%), Positives = 354/390 (90%)

Query:     1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
             MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDV
Sbjct:     1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60

Query:    61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
             EKPGSKLHKKETCEAVTIIETPP+         KTPRGLRSLCTVWAQHL+EE+RRRFYK
Sbjct:    61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120

Query:   121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
             NW               ET++GKKDIQ+QLEKMKKYC+VIRVLAHTQIRKMKGLKQKKAH
Sbjct:   121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180

Query:   181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
             L EIQ+NGG +A+KVD+A   FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct:   181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240

Query:   241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
             LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK  QE+HSAMT
Sbjct:   241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT 300

Query:   301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
             E+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKL
Sbjct:   301 EYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKL 360

Query:   361 KFIDTSSKFGHGRFQTTQEKAKYYGR-LKA 389
             KFID +S  GHGRFQT+QEKAK+YGR +KA
Sbjct:   361 KFIDAASNGGHGRFQTSQEKAKFYGRTIKA 390
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
TAIR|locus:2018605 RP1 "ribosomal protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEM8 RPL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLW1 RPL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P39023 RPL3 "60S ribosomal protein L3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|735105 Rpl3 "ribosomal protein L3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6X5 RPL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNY2 RPL3 "60S ribosomal protein L3" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLN2 RPL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1351605 Rpl3 "ribosomal protein L3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6FTJ2RL3_CANGANo assigned EC number0.66230.98710.9922yesno
P49149RL3_TOXCANo assigned EC number0.66490.99480.9626N/Ano
A6UQJ0RL3_METVSNo assigned EC number0.37940.84570.9850yesno
P35684RL3_ORYSJNo assigned EC number0.87141.01.0yesno
C5A286RL3_THEGJNo assigned EC number0.36950.87140.9797yesno
P36584RL3B_SCHPONo assigned EC number0.70100.98710.9896yesno
A6VHD2RL3_METM7No assigned EC number0.37120.84570.9850yesno
O96774RL3_TETTHNo assigned EC number0.60620.97680.9718N/Ano
A4FVY2RL3_METM5No assigned EC number0.36580.84570.9850yesno
P39872RL3_BOVINNo assigned EC number0.67250.99480.9602yesno
Q9UWG2RL3_METVANo assigned EC number0.37940.84570.9850yesno
Q8SQI3RL3_ENCCUNo assigned EC number0.52040.95880.9738yesno
Q6BXM5RL3_DEBHANo assigned EC number0.66490.98710.9871yesno
P54014RL3_METJANo assigned EC number0.36140.84060.9761yesno
Q4R5Q0RL3_MACFANo assigned EC number0.67760.99480.9602N/Ano
P22738RL32_ARATHNo assigned EC number0.88600.99220.9897yesno
Q2NFV6RL3_METSTNo assigned EC number0.37290.83290.9614yesno
O59418RL3_PYRHONo assigned EC number0.35270.88940.9558yesno
A5UL89RL3_METS3No assigned EC number0.36330.84060.9732yesno
Q5JDJ0RL3_PYRKONo assigned EC number0.36410.87140.9797yesno
Q8TZZ8RL3_PYRFUNo assigned EC number0.35540.89710.9561yesno
P39023RL3_HUMANNo assigned EC number0.68270.99480.9602yesno
P17094RL31_ARATHNo assigned EC number0.86820.99480.9948nono
B6YSL3RL3_THEONNo assigned EC number0.35040.86630.9711yesno
Q8NKF4RL3_ASPFUNo assigned EC number0.69070.98970.9821yesno
C6A159RL3_THESMNo assigned EC number0.35020.88940.9637yesno
P40372RL3A_SCHPONo assigned EC number0.69840.98710.9896yesno
P50880RL3_CAEELNo assigned EC number0.64960.99480.9650yesno
O26110RL3_METTHNo assigned EC number0.35240.84310.9732yesno
P59671RL3_NEUCRNo assigned EC number0.67260.98970.9821N/Ano
A9A9B8RL3_METM6No assigned EC number0.36850.84570.9850yesno
P14126RL3_YEASTNo assigned EC number0.65970.98710.9922yesno
P34113RL3_DICDINo assigned EC number0.65640.98710.9648yesno
Q759R7RL3_ASHGONo assigned EC number0.67010.98710.9922yesno
Q975I1RL3_SULTONo assigned EC number0.34480.86370.9795yesno
Q9NBK4RL3_CAEBRNo assigned EC number0.64700.99480.9650N/Ano
O28354RL3_ARCFUNo assigned EC number0.34510.84060.9879yesno
Q9YFM2RL3_AERPENo assigned EC number0.37030.86110.9738yesno
O16797RL3_DROMENo assigned EC number0.65980.99480.9302yesno
Q6LX10RL3_METMPNo assigned EC number0.37120.84570.9850yesno
P27659RL3_MOUSENo assigned EC number0.67760.99480.9602yesno
A6UV68RL3_META3No assigned EC number0.33330.84310.9849yesno
Q9V1T5RL3_PYRABNo assigned EC number0.35130.90480.9750yesno
Q3IMY8RL3_NATPDNo assigned EC number0.34330.83540.9672yesno
Q6CJR7RL3_KLULANo assigned EC number0.65460.98710.9922yesno
P21531RL3_RATNo assigned EC number0.68020.99480.9602yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
PTZ00103390 PTZ00103, PTZ00103, 60S ribosomal protein L3; Prov 0.0
PRK04231337 PRK04231, rpl3p, 50S ribosomal protein L3P; Review 1e-109
TIGR03626330 TIGR03626, L3_arch, archaeal ribosomal protein L3 1e-102
pfam00297199 pfam00297, Ribosomal_L3, Ribosomal protein L3 5e-75
COG0087218 COG0087, RplC, Ribosomal protein L3 [Translation, 7e-50
PRK00001210 PRK00001, rplC, 50S ribosomal protein L3; Validate 5e-06
TIGR03625202 TIGR03625, L3_bact, 50S ribosomal protein L3, bact 1e-04
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional Back     alignment and domain information 
 Score =  682 bits (1761), Expect = 0.0
 Identities = 285/388 (73%), Positives = 334/388 (86%), Gaps = 5/388 (1%)

Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKR  RHRG++++FPKDDP++P  LTAF+GYKAGMTHIVRDV
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDV 60

Query: 61  EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           ++PGSKLHKKE  EAVTIIE PP+VVVG+VGY +TPRGLR+L TVWA HL++E RRRFYK
Sbjct: 61  DRPGSKLHKKEVVEAVTIIEAPPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYK 120

Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
           NW KSKKKAFTKY K   T   KK  +  L+++KKYC+VIRV+AHTQ  K+  L QKKAH
Sbjct: 121 NWYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVIRVIAHTQPSKLP-LGQKKAH 176

Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           +MEIQVNGGSVA+KVDFA    EK++P+D+VFQ++EMID+IGVTKG G+EGVV RWGVTR
Sbjct: 177 VMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMIDVIGVTKGHGFEGVVKRWGVTR 236

Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
           LPRKTHRGLRKVACIGAWHPARV +TV RAGQ+GYHHRTE+NKKIY++G A  + ++A T
Sbjct: 237 LPRKTHRGLRKVACIGAWHPARVQYTVPRAGQHGYHHRTELNKKIYRIGVAE-DPNNATT 295

Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
           E D TEK ITPMGGFPHYG V  D+L++KGC VGPKKRV+TLR+SL+ QTSR ALE+I L
Sbjct: 296 EADLTEKTITPMGGFPHYGTVRNDFLMLKGCVVGPKKRVITLRKSLVPQTSRKALEKITL 355

Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
           KFIDTSSK GHGRFQT +EKAK+YG LK
Sbjct: 356 KFIDTSSKIGHGRFQTKEEKAKFYGPLK 383

Length = 390
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|144036 pfam00297, Ribosomal_L3, Ribosomal protein L3 Back     alignment and domain information
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234564 PRK00001, rplC, 50S ribosomal protein L3; Validated Back     alignment and domain information
>gnl|CDD|234285 TIGR03625, L3_bact, 50S ribosomal protein L3, bacterial Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
PTZ00103390 60S ribosomal protein L3; Provisional 100.0
PRK04231337 rpl3p 50S ribosomal protein L3P; Reviewed 100.0
TIGR03626330 L3_arch archaeal ribosomal protein L3. This model 100.0
KOG0746384 consensus 60S ribosomal protein L3 and related pro 100.0
PF00297263 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR0 100.0
COG0087218 RplC Ribosomal protein L3 [Translation, ribosomal 100.0
CHL00143207 rpl3 ribosomal protein L3; Validated 100.0
PRK00001210 rplC 50S ribosomal protein L3; Validated 100.0
TIGR03625202 L3_bact 50S ribosomal protein L3, bacterial. This 100.0
KOG3141310 consensus Mitochondrial/chloroplast ribosomal prot 100.0
>PTZ00103 60S ribosomal protein L3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.5e-145  Score=1080.13  Aligned_cols=384  Identities=74%  Similarity=1.231  Sum_probs=368.4

Q ss_pred             CCCCCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEE
Q 016469            1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE   80 (389)
Q Consensus         1 M~hrk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE   80 (389)
                      |||||||+||||||||+|||||++++|||||||+||.+.+|+|+||+|||||||||+++||+|+|+++|+|+++||||||
T Consensus         1 MshRk~~~PR~GSLgf~PRKRa~~~~~rvrswP~dd~~~~p~L~aF~GyKAGMTHvv~~~drp~S~~~~kEv~~~VTIiE   80 (390)
T PTZ00103          1 MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDVDRPGSKLHKKEVVEAVTIIE   80 (390)
T ss_pred             CCCCCCCCCCCCcCCcCCccccccCCCCcccCCCcCCCCCceEeeeeeeccCCeEEEEecCCCCCCcCCCeEEeeeEEEe
Confidence            99999999999999999999999999999999999976789999999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhhcceeEE
Q 016469           81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI  160 (389)
Q Consensus        81 ~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i  160 (389)
                      +|||+|+|+++|.+|++|+.+++||||++++++++|++||||++|+|+||+++.+.+.+   ..+++..++.|.++|++|
T Consensus        81 tPPm~V~GirgY~~tp~Gl~~l~~vwA~~l~~e~~rr~yk~~~~s~k~af~k~~~~~~~---~~~~~~~~~~l~k~~~~I  157 (390)
T PTZ00103         81 APPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYKNWYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVI  157 (390)
T ss_pred             CCCeEEEEEEEEEECCCCcEEeEEEeeccCcHHHhhhhccccchhhhhhhhhhhhhhcc---hhhHHHHHHHHhhcccEE
Confidence            99999999999999999999999999999999999999999999999999998865422   145677777787889999


Q ss_pred             EEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccccceecccccccCCceEEEEEEeeeecceeeeEeeccCC
Q 016469          161 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR  240 (389)
Q Consensus       161 r~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~  240 (389)
                      |+|+||||++++ |+|||+|||||+|+|+++++++|||..+||++|+++|+|++||+|||+|+|||||||||||||||++
T Consensus       158 Rvi~hTqp~~~~-l~kKkp~imEiqv~GGsv~~k~d~a~~llgk~i~v~dvF~~ge~VDVigvTKGKGfqGvvKRwg~~~  236 (390)
T PTZ00103        158 RVIAHTQPSKLP-LGQKKAHVMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMIDVIGVTKGHGFEGVVKRWGVTR  236 (390)
T ss_pred             EEEEEcchhhcC-cCCcCccEEEEeecCCCHHHHHHHHHHHhcCeechhhhccCCCEeeeEEEEcCCccccCeeccccCC
Confidence            999999999876 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceee
Q 016469          241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGV  320 (389)
Q Consensus       241 ~p~kth~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~  320 (389)
                      +|+++|++||++||||+|||+||+++++||||||||+||++||+||+|+.+ ++.++++|+||+++++|||+|||+|||+
T Consensus       237 ~p~ktH~~~RkvGsiG~w~P~RV~~~v~~aGQmG~h~rTe~Nk~I~rI~~~-~~~~~~~t~~~~~~~~ItP~GGF~hYG~  315 (390)
T PTZ00103        237 LPRKTHRGLRKVACIGAWHPARVQYTVPRAGQHGYHHRTELNKKIYRIGVA-EDPNNATTEADLTEKTITPMGGFPHYGT  315 (390)
T ss_pred             CCccccCCCCCCCccCCCCCCcccCCCccCcCCCCceEEEeccEEEEEcCC-CCcccccccccccccccccCCCccccce
Confidence            997799999999999999999999999999999999999999999999987 7788999999999999999999999999


Q ss_pred             eeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccCcCCCCChHHHhhhccccCC
Q 016469          321 VNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA  389 (389)
Q Consensus       321 v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G~g~fq~~~ek~~~~~~~k~  389 (389)
                      |++||||||||||||++|+|+||++++++.+..++++|+|+||||+||+|||||||++||++|||+||+
T Consensus       316 V~~d~imiKGsVpGp~kr~v~lR~ai~~~~~~~~~~~~~lkfidtssk~ghgrfqt~~ek~~~~g~~k~  384 (390)
T PTZ00103        316 VRNDFLMLKGCVVGPKKRVITLRKSLVPQTSRKALEKITLKFIDTSSKIGHGRFQTKEEKAKFYGPLKK  384 (390)
T ss_pred             ecCCEEEEeccccCCCCceEEEehhhccccccccccccceeEeecccccCcccccChHHhhhhcchhhh
Confidence            999999999999999999999999999886557888999999999999999999999999999999985

>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed Back     alignment and domain information
>TIGR03626 L3_arch archaeal ribosomal protein L3 Back     alignment and domain information
>KOG0746 consensus 60S ribosomal protein L3 and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00297 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR000597 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00143 rpl3 ribosomal protein L3; Validated Back     alignment and domain information
>PRK00001 rplC 50S ribosomal protein L3; Validated Back     alignment and domain information
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial Back     alignment and domain information
>KOG3141 consensus Mitochondrial/chloroplast ribosomal protein L3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
3izr_C389 Localization Of The Large Subunit Ribosomal Protein 0.0
2zkr_b403 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-146
3izs_C388 Localization Of The Large Subunit Ribosomal Protein 1e-132
3o58_C387 Yeast 80s Ribosome. This Entry Consists Of The 60s 1e-132
1s1i_C386 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-132
3zf7_f429 High-resolution Cryo-electron Microscopy Structure 1e-128
4a17_B391 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-126
3jyw_C362 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-125
3j21_C365 Promiscuous Behavior Of Proteins In Archaeal Riboso 4e-52
1ml5_e338 Crystal Structure Of The Ribosome At 5.5 A Resoluti 4e-48
1jj2_B337 Fully Refined Crystal Structure Of The Haloarcula M 4e-48
1s72_B338 Refined Crystal Structure Of The Haloarcula Marismo 4e-48
1ffk_B337 Crystal Structure Of The Large Ribosomal Subunit Fr 6e-48
2j01_E206 Structure Of The Thermus Thermophilus 70s Ribosome 4e-04
3fin_E205 T. Thermophilus 70s Ribosome In Complex With Mrna, 4e-04
3pyo_D204 Crystal Structure Of A Complex Containing Domain 3 4e-04
>pdb|3IZR|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 389 Back     alignment and structure 
Iteration: 1

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/389 (83%), Positives = 348/389 (89%)
Query: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
           MSHRKFEHPRHGSLGFLPRKR SRHRGKVK+FPKDD  KPC LTAFLGYKAGMTHIVR+V
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREV 60
Query: 61  EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
           EKPGSKLHKKETCEAVTIIETPPL         KTPRGLR+L +VWAQHL+E+VRRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
           NWC              ++D GKK+IQ QLEKMKKY T++RV+AHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
           LMEIQVNGG++A KVD+ Y FFEK++P++AVFQKDEM+DIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
           LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKIYK+GK+ QESH A T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
           EFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389
           KFIDTSSKFGHGRFQTT EK K+YGRLKA
Sbjct: 361 KFIDTSSKFGHGRFQTTDEKQKFYGRLKA 389
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 403 Back     alignment and structure
>pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 388 Back     alignment and structure
>pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 387 Back     alignment and structure
>pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 386 Back     alignment and structure
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 429 Back     alignment and structure
>pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 391 Back     alignment and structure
>pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 362 Back     alignment and structure
>pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 365 Back     alignment and structure
>pdb|1ML5|EE Chain e, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 338 Back     alignment and structure
>pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure
>pdb|1S72|B Chain B, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 338 Back     alignment and structure
>pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 337 Back     alignment and structure
>pdb|2J01|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 206 Back     alignment and structure
>pdb|3FIN|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 205 Back     alignment and structure
>pdb|3PYO|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 204 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 1e-178
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 1e-170
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 1e-164
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 1e-163
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 1e-134
2ftc_C211 L3MT, MRP-L3, mitochondrial 39S ribosomal protein 2e-09
3v2d_E206 50S ribosomal protein L3; ribosome associated inhi 7e-08
2zjr_B211 50S ribosomal protein L3; ribosome, large ribosoma 7e-08
3r8s_D209 50S ribosomal protein L3; protein biosynthesis, RN 1e-07
3bbo_F259 Ribosomal protein L3; large ribosomal subunit, spi 2e-07
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 403 Back     alignment and structure
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Length = 391 Back     alignment and structure
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 3izc_C 3izs_C 1s1i_C 3jyw_C Length = 387 Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Length = 338 Back     alignment and structure
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 211 Back     alignment and structure
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Length = 206 Back     alignment and structure
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ... Length = 211 Back     alignment and structure
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Length = 209 Back     alignment and structure
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 259 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
3u5e_B387 60S ribosomal protein L3; translation, ribosome, r 100.0
3iz5_C389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 100.0
4a17_B391 RPL3, ribosomal protein L3; eukaryotic ribosome, r 100.0
2zkr_b403 60S ribosomal protein L3; protein-RNA complex, 60S 100.0
3j21_C365 50S ribosomal protein L3P; archaea, archaeal, KINK 100.0
1vq8_B338 50S ribosomal protein L3P; ribosome 50S, protein-p 100.0
2zjr_B211 50S ribosomal protein L3; ribosome, large ribosoma 100.0
2ftc_C211 L3MT, MRP-L3, mitochondrial 39S ribosomal protein 100.0
3r8s_D209 50S ribosomal protein L3; protein biosynthesis, RN 100.0
3bbo_F259 Ribosomal protein L3; large ribosomal subunit, spi 100.0
3v2d_E206 50S ribosomal protein L3; ribosome associated inhi 100.0
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C Back     alignment and structure
Probab=100.00  E-value=1.6e-150  Score=1118.88  Aligned_cols=385  Identities=66%  Similarity=1.124  Sum_probs=373.5

Q ss_pred             CCCCCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEE
Q 016469            1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE   80 (389)
Q Consensus         1 M~hrk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE   80 (389)
                      |||||||+||||||||+|||||++++|||||||+||++++|+|+||+|||||||||+++||||+|+++|+|+++||||||
T Consensus         1 mshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivE   80 (387)
T 3u5e_B            1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVD   80 (387)
T ss_dssp             -CCCSSCCCCSSCGGGCCCCCCSCSSCCCCCCCCCCTTSCCCCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred             CCcccCCCCCCCCCccCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence            99999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhhcceeEE
Q 016469           81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI  160 (389)
Q Consensus        81 ~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i  160 (389)
                      +|||+|+||++|.+||+|+++++||||++++++++||||+|||+|+++||++|++++.++.  ++++.+|++|+++|++|
T Consensus        81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~--~~~~~~~~~~~k~~~vi  158 (387)
T 3u5e_B           81 TPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDG--AGIERELARIKKYASVV  158 (387)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCTTTSCCCTTTTTGGGGSSSS--HHHHHHHHHHHHSCSEE
T ss_pred             cCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcccchhhhhhhhhhcccccchh--HHHHHHHHHhhhcccEE
Confidence            9999999999999999999999999999999999999999999999999999998765322  67889999999999999


Q ss_pred             EEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccccceecccccccCCceEEEEEEeeeecceeeeEeeccCC
Q 016469          161 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR  240 (389)
Q Consensus       161 r~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~  240 (389)
                      |+|+||||++ .+|+|||+|||||||+|+++++++|||...+|++|+++|+|++||+|||+|+|||||||||||||||++
T Consensus       159 Rvi~hTqp~l-~~l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~  237 (387)
T 3u5e_B          159 RVLVHTQIRK-TPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK  237 (387)
T ss_dssp             EEEEECCGGG-SSCSCCSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCC
T ss_pred             EEEEeccccc-cCccccCceeEEEEecCCCHHHHHHHHHhccCCEechHHhccCCCEEEEEEEEcCccceeeeeecccCC
Confidence            9999999997 589999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceee
Q 016469          241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGV  320 (389)
Q Consensus       241 ~p~kth~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~  320 (389)
                      +|+++|++||++||||+|||+|||+|++||||||||+||++||+||+||.+ .+.+||+||||+++++|||+|||+|||+
T Consensus       238 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~~~~~~~t~~d~t~k~ItP~GGF~hYG~  316 (387)
T 3u5e_B          238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG-DDEANGATSFDRTKKTITPMGGFVHYGE  316 (387)
T ss_dssp             CCTTCTTCSSSCSCCCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEECCS-SCSCSSCCTTTCCCCCSCCTTCBTTTBC
T ss_pred             CCccccCCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCC-ccccccccccccccccccCCCCccccce
Confidence            999999999999999999999999999999999999999999999999998 6779999999999999999999999999


Q ss_pred             eeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccCcCCCCChHHHhhhccccCC
Q 016469          321 VNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA  389 (389)
Q Consensus       321 v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G~g~fq~~~ek~~~~~~~k~  389 (389)
                      |++||||||||||||++++|+||++++++.++.++++|+|+||||+||||||||||+|||++|||+||+
T Consensus       317 V~~~~ilvKGsVpG~kk~~v~lr~s~~~~~~~~~~e~~~lkfIdtsSK~Ghgrfqt~~ek~~f~g~lk~  385 (387)
T 3u5e_B          317 IKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLKK  385 (387)
T ss_dssp             CCSCEEEEESCCSSCTTCEEEEEECSSCCCCBTTBCCCCEEEECCSCTTTTCCCSSHHHHHHHHCCCSS
T ss_pred             ecCCEEEEEecccCCCCcEEEEeecccCCcccccccCCcceEEEcccccCCCcCCCHHHHHhhcccccc
Confidence            999999999999999999999999999987778999999999999999999999999999999999996
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B Back     alignment and structure
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ... Back     alignment and structure
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ... Back     alignment and structure
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ... Back     alignment and structure
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d1vqob1337 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon 1e-110
d2gycb1209 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherich 1e-21
d2j01e1205 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus t 5e-16
d2j01e1205 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus t 4e-06
d2zjrb1205 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococc 1e-14
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 337 Back     information, alignment and structure

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  324 bits (832), Expect = e-110
 Identities = 119/370 (32%), Positives = 177/370 (47%), Gaps = 38/370 (10%)

Query: 5   KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
           +   PR GSLGF PRKR++    +  ++P DD      +  F GYKAGMTH+V   ++P 
Sbjct: 2   QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQP--GVQGFAGYKAGMTHVVLVNDEPN 59

Query: 65  SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
           S     E    VT+IETPP+  V +  Y  TP G R L  VW    + E+ R        
Sbjct: 60  SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 119

Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
               A  +    +E                     +R++ HT    +  + +KK  +ME 
Sbjct: 120 DPDAAEEQIRDAHE---------------AGDLGDLRLITHTVPDAVPSVPKKKPDVMET 164

Query: 185 QVNGGSVAQKVDFAYGFFE--KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
           +V GGSV+ ++D A    E   +  ++ +F+  E  D+ GVTKGKG +G V RWGV +  
Sbjct: 165 RVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRK 224

Query: 243 RKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
            K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +G+          
Sbjct: 225 GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGE---------- 274

Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
                  + T  GGF +YG V+  Y L+KG   GP KR+V  R ++          E+  
Sbjct: 275 -----GDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQPRLDPEV-- 327

Query: 361 KFIDTSSKFG 370
           +++   S  G
Sbjct: 328 RYVSNESNQG 337
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Length = 205 Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Length = 205 Back     information, alignment and structure
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Length = 205 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1vqob1337 Ribosomal protein L3 {Archaeon Haloarcula marismor 100.0
d2zjrb1205 Ribosomal protein L3 {Deinococcus radiodurans [Tax 100.0
d2gycb1209 Ribosomal protein L3 {Escherichia coli [TaxId: 562 100.0
d2j01e1205 Ribosomal protein L3 {Thermus thermophilus [TaxId: 100.0
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Ribosomal protein L3
domain: Ribosomal protein L3
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9.1e-112  Score=834.28  Aligned_cols=329  Identities=35%  Similarity=0.620  Sum_probs=298.7

Q ss_pred             CCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEEeCCe
Q 016469            5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPL   84 (389)
Q Consensus         5 k~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE~pP~   84 (389)
                      |+|+||||||||||||||++++|||||||+++  .+++++||||||+||||||++||+++|+++|+|+++||||||+|||
T Consensus         2 k~~~PR~GSl~f~PRkRa~~~~~rv~s~p~~~--~~~~~~G~iG~KvGMT~v~~~d~~~~S~~~gk~i~vPVTVIe~~p~   79 (337)
T d1vqob1           2 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDD--GQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPM   79 (337)
T ss_dssp             CCCCCCSSCSSSCSCCCCSCSSCCCSCCCCSC--SSCEECCEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECCCE
T ss_pred             CCCCCCcccCCcCccccccccCCCcccCcccC--CCcceEEEEEEccCceEEEEeCCCcCCcccCceeEeeeEEEEcCCc
Confidence            68999999999999999999999999999987  4789999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhh--cceeEEEE
Q 016469           85 VVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMK--KYCTVIRV  162 (389)
Q Consensus        85 ~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~--~~~~~ir~  162 (389)
                      +|+|+++|++|+|++.+++++|++++++++.|++.+.+....                 +.....+..+.  +.++++|+
T Consensus        80 ~V~~vkt~e~dgy~a~qlg~~~~~~~~~~~~r~~~~~~~~~~-----------------k~~~~~~k~~~~~~~~~~vrv  142 (337)
T d1vqob1          80 RAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDP-----------------DAAEEQIRDAHEAGDLGDLRL  142 (337)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCSSCCH-----------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred             eEEEEEEEecCCCceEEEEEEEccccchhhhcccchhhccch-----------------hhcchhhhhhhhhcccceEEE
Confidence            999999999999999999999999998887765543221111                 11222222222  57899999


Q ss_pred             EEeehhhhhcCccccCceEEEEEeCCCcccccccccccc--ccceecccccccCCceEEEEEEeeeecceeeeEeeccCC
Q 016469          163 LAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGF--FEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR  240 (389)
Q Consensus       163 i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~--lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~  240 (389)
                      |+||||.+++++++|+++|+||+|+|++++++++|+...  +|++|+++|+|++||+|||+|+|||||||||||||||++
T Consensus       143 i~~tqp~~~~~~~~KKp~v~E~~v~Gg~~~e~~~~~~~~~~~G~ei~v~dvF~~G~~VDV~g~TKGKGFqGvvKR~gf~~  222 (337)
T d1vqob1         143 ITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQK  222 (337)
T ss_dssp             EEECCGGGCTTSCCCSCCEEEEEEESSCHHHHHHHHHHHHHHTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCC
T ss_pred             EeeeccccccccccccchheeeeccCCchhhhhhhhhhhhccccEEEeeheecCCCEEEEEEEecccccccceEeeeecc
Confidence            999999998899999999999999999999999998764  499999999999999999999999999999999999999


Q ss_pred             CCCCCcC---CCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcc
Q 016469          241 LPRKTHR---GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPH  317 (389)
Q Consensus       241 ~p~kth~---~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~  317 (389)
                      +| ++|+   .||++||||+|+|+|||||++||||||||+||++||+|++|+++               ++|||+|||+|
T Consensus       223 ~p-~sHg~~~~hR~~GsiG~~~PgRV~kg~kmaGqmG~~~rT~~Nl~IvkI~~~---------------~~i~~~gGf~~  286 (337)
T d1vqob1         223 RK-GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG---------------DEPTVDGGFVN  286 (337)
T ss_dssp             CC-GGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEE---------------STTCCTTCBTT
T ss_pred             cc-cccCCCccccCCcccCCCCCCceecccccCCccCCccEEEeCcEEEEEccc---------------ccccccCCcee
Confidence            99 6774   58999999999999999999999999999999999999999976               47999999999


Q ss_pred             eeeeeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccC
Q 016469          318 YGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG  370 (389)
Q Consensus       318 YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G  370 (389)
                      ||.|++||||||||||||++++|+||+|+++..  .....|+|+||||+||||
T Consensus       287 ygdve~~~ilVKGsVPG~~~~~V~ir~aik~~~--~~~~~~~i~~is~~Sk~g  337 (337)
T d1vqob1         287 YGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPND--QPRLDPEVRYVSNESNQG  337 (337)
T ss_dssp             TBCCCEEEEEEESCCSSCTTCEEEEEECSSCSS--CCCCSCCEEEECCCCSCC
T ss_pred             eeeccCCEEEEEecccCCCCcEEEEeccccCCC--CccCCCcceEEeccCcCC
Confidence            999999999999999999999999999999875  455689999999999998
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure