Citrus Sinensis ID: 016504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccEEEEccccccEEEEEEccccccccccEEEEEccccEEEEEEEcccccccccccEEEEEEEEccccEEEEEEEccccccccccHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccEEEEEcccccEEEEEEEEEEEccccccEEEEcccccEEEEEEEccccccccccccEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHccccccEEEEEcccccccccHHHcHHHHHHHHcccccccccccccccccEEcccccccccccccHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccHcccccHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MDPEAALELVKHGATLllldvpqytlfgidtqmfsvgpsfkgikmippgvhfvfyssssrdgkefspiigffidagpsevIVRKWDQQEERLVKVSEEEEARYTQAVCSLefdkqlgpytlsqygewKRLSSYITKSIIERiepiggeitvtaesgmmkntpkstMERALDEQlktskftasvdssqkkgcyytsiprvvkcrgmqgeeltslnldkTELLESLItknyggsedtLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLfgcseaplhtrsQLFTMFIKVIYYQLKYGlqkdrngtetgasallddswlsADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENslgwefqqssavdgmyfeendeyapVVEMLDE
Flexible Loop (DISEMBL)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVcslefdkqlgpytlsqygewkRLSSYITKSIIERIEPIGGEitvtaesgmmkntpKSTMERALDEQLKtskftasvdssqkkgcyytSIPRVVKCrgmqgeeltslnldktELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE
Low Complexity Region (SEG)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQeerlvkvseeeeARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSiieriepiggeiTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE
Disordered region (IsUnstruct)
******LELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVS**EEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVT*************************************GCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEE*************
Disordered Region (DISOPRED)
***EAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSS*****FSPIIGFFIDAGPSEVIVRKWDQQEERLVK***************LEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAES************************************YYTSIPRVVK*****GEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLD*
Disordered Region (DISEMBL)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE
Disordered Region (DISPRO)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQ**************KKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQS***DGMYFEENDEYAPVVEMLD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
Q08DJ7	384	Protein AAR2 homolog OS=B	yes	no	0.914	0.924	0.302	3e-41
Q9Y312	384	Protein AAR2 homolog OS=H	yes	no	0.925	0.934	0.302	3e-40
Q4R7D0	384	Protein AAR2 homolog OS=M	N/A	no	0.932	0.942	0.305	6e-40
Q5R5N9	384	Protein AAR2 homolog OS=P	yes	no	0.925	0.934	0.302	9e-40
Q09305	357	Protein AAR2 homolog OS=C	yes	no	0.865	0.941	0.312	9e-40
Q9D2V5	384	Protein AAR2 homolog OS=M	yes	no	0.920	0.929	0.293	1e-39
O77682	337	Protein AAR2 homolog OS=O	no	no	0.809	0.931	0.281	2e-31
P32357	355	A1 cistron-splicing facto	yes	no	0.667	0.729	0.233	1e-08

>sp|Q08DJ7|AAR2_BOVIN Protein AAR2 homolog OS=Bos taurus GN=AAR2 PE=2 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 200/397 (50%), Gaps = 42/397 (10%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF+ YSS  +
Sbjct: 6   MDPELARRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + +E  P +GFF++     + V +WD   E  V +S   EA       +L E D+ LGP
Sbjct: 66  ANPREVGPRMGFFLNLQQRGLKVLRWDAAREE-VDLSPAPEAEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME 167
           Y  +   +W  L+++I+++ +E+++P   +I   +E             + +N P+   E
Sbjct: 125 YPYTTLKKWISLTNFISEATVEKLQPESRQICAFSEVLPVLSMRHTKDRVGQNLPRCGAE 184

Query: 168 -RALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLIT 226
            ++  E L           ++ +   ++ +P  +   G    E+T  ++D +  LE++++
Sbjct: 185 CKSYQEGLARLPEMKPRAGTEIR---FSELPTQMFPAGATPAEITRHSMDLSYALETVLS 241

Query: 227 KNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIK 286
           K +  S   +LGELQFAF+ FL+G   EAF  WK L++LL    EA +   S L+   I 
Sbjct: 242 KQFPCSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEEAMVKHHS-LYVNLIS 300

Query: 287 VIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
           ++Y+QL           E  A   +D   +S D+FL    + FF+  +  + VD  L   
Sbjct: 301 ILYHQL----------GEIPADFFVD--IVSQDNFLTSTLQVFFSSARSVA-VDATLRQK 347

Query: 347 TRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVV 383
             + +  L     W+F+           E ++ APVV
Sbjct: 348 AERFQAHLTKKFRWDFEA----------EPEDCAPVV 374

Bos taurus (taxid: 9913)

>sp|Q9Y312|AAR2_HUMAN Protein AAR2 homolog OS=Homo sapiens GN=AAR2 PE=1 SV=2

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 199/403 (49%), Gaps = 44/403 (10%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF+ YSS  +
Sbjct: 6   MDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + KE  P +GFF+      + V +W    E  V +S   E+       +L E D+ LGP
Sbjct: 66  ANPKEVGPRMGFFLSLHQRGLTVLRWSTLREE-VDLSPAPESEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME 167
           Y  +   +W  L+++I+++ +E+++P   +I   ++             + +N P+  +E
Sbjct: 125 YPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPRCGIE 184

Query: 168 -RALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLIT 226
            ++  E L           ++ +   ++ +P  +   G    E+T  ++D +  LE+++ 
Sbjct: 185 CKSYQEGLARLPEMKPRAGTEIR---FSELPTQMFPEGATPAEITKHSMDLSYALETVLN 241

Query: 227 KNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFI 285
           K +  S   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I
Sbjct: 242 KQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMMKHHTLYINLI 299

Query: 286 KVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLT 345
            ++Y+QL           E  A   +D   +S D+FL    + FF+     + VD  L  
Sbjct: 300 SILYHQL----------GEIPADFFVD--IVSQDNFLTSTLQVFFSSACSIA-VDATLRK 346

Query: 346 WTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
              K +  L     W+F            E ++ APVV  L E
Sbjct: 347 KAEKFQAHLTKKFRWDFAA----------EPEDCAPVVVELPE 379

Homo sapiens (taxid: 9606)

>sp|Q4R7D0|AAR2_MACFA Protein AAR2 homolog OS=Macaca fascicularis GN=AAR2 PE=2 SV=1

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 122/400 (30%), Positives = 198/400 (49%), Gaps = 38/400 (9%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF++YSS  +
Sbjct: 6   MDPELAKRLFFEGATVVILNMPKGTEFGIDCNSWEVGPKFRGVKMIPPGIHFLYYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + KE  P +GFF+      + V +W    E  V +S   E+       +L E D+ LGP
Sbjct: 66  ANPKEVGPRMGFFLSLYQRGLTVLRWSTLREE-VDLSPAPESEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE---SGMMKNTPK---STMERALDE 172
           Y  +   +W  L+++I+++ +E+++P   +I   ++      MK+T       + R   E
Sbjct: 125 YPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPRCGTE 184

Query: 173 QLKTSKFTASVDSSQKKG---CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNY 229
                +  A +   + +      ++ +P  +   G    E+T  ++D +  L++++ K +
Sbjct: 185 CKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPAGATPAEITKHSMDLSYALQTVLNKQF 244

Query: 230 GGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKVI 288
             S   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I ++
Sbjct: 245 PSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMVKHHTLYINLISIL 302

Query: 289 YYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTR 348
           Y+QL           E  A   +D   +S D+FL    + FF+     + VD  L     
Sbjct: 303 YHQLG----------EIPADFFVD--IVSQDNFLTSTLQVFFSSACSIA-VDATLRKKAE 349

Query: 349 KLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           K +  L     W+F            E ++ APVV  L E
Sbjct: 350 KFQAHLTKKFRWDFAA----------EPEDCAPVVVELPE 379

Macaca fascicularis (taxid: 9541)

>sp|Q5R5N9|AAR2_PONAB Protein AAR2 homolog OS=Pongo abelii GN=AAR2 PE=2 SV=1

 Score =  164 bits (416), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 197/403 (48%), Gaps = 44/403 (10%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+K IPPG+HF+ YSS  +
Sbjct: 6   MDPELAKRLFFEGATVVILNMPRGTEFGIDYNSWEVGPKFRGVKTIPPGIHFLHYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + KE  P +GFF+      + V +W    E  V +S   E+       +L E D+ LGP
Sbjct: 66  ANPKEVGPRMGFFLSLHQRGLTVLRWSTLREE-VDLSPAPESEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME 167
           Y  +   +W  L+++I+++ +E+++P   +I   ++             M +N P+   E
Sbjct: 125 YPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRMGQNLPRCGTE 184

Query: 168 -RALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLIT 226
            ++  E L           ++ +   ++ +P  +   G    E+T  ++D +  LE+++ 
Sbjct: 185 CKSYQEGLARLPEMKPRAGTEIR---FSELPTQMFPEGATPAEITKHSMDLSYALETVLN 241

Query: 227 KNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFI 285
           K +  S   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I
Sbjct: 242 KQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMMKHHTLYINLI 299

Query: 286 KVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLT 345
            ++Y+QL           E  A   +D   +S D+FL    + FF+     + VD  L  
Sbjct: 300 SILYHQLG----------EIPADFFVD--IVSQDNFLTSTLQVFFSSACSIA-VDATLRK 346

Query: 346 WTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
              K +  L     W+F            E ++ APVV  L E
Sbjct: 347 KAEKFQAHLTKKFRWDFAA----------EPEDCAPVVVELPE 379

Pongo abelii (taxid: 9601)

>sp|Q09305|AAR2_CAEEL Protein AAR2 homolog OS=Caenorhabditis elegans GN=F10B5.2 PE=1 SV=1

 Score =  164 bits (416), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 173/378 (45%), Gaps = 42/378 (11%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           + PE    + ++GA LL L  PQ + FGID + +  G  F G+KMIPPGVHFV+ S  S 
Sbjct: 5   LPPEIVDYMYRNGAFLLFLGFPQASEFGIDYKSWKTGEKFMGLKMIPPGVHFVYCSIKS- 63

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCS----LEFDKQL 116
                +P IGFF +    E++V+KW+ + E      E+EE    Q           D  L
Sbjct: 64  -----APRIGFFHNFKAGEILVKKWNTESETF----EDEEVPTDQISEKKRQLKNMDSSL 114

Query: 117 GPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKT 176
            PY    Y  W  L+ +IT   +ERI PI G IT  AE   + +     ME A  E  K 
Sbjct: 115 APYPYENYRSWYGLTDFITADTVERIHPILGRITSQAE---LVSLETEFMENAEKEH-KD 170

Query: 177 SKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNY------- 229
           S F   VD        +T    +   +  +G E+   ++    + ++ +   Y       
Sbjct: 171 SHFRNRVDRENPVRTRFTDQHGLPIMKIREGYEIRFQDIPPLTVSQNRVGIEYSDRLYRL 230

Query: 230 ----GGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFI 285
               GG    LL E+Q AF+ FL GQ  E F QWK ++ L+  C    L +  +LF  FI
Sbjct: 231 LRALGGDWKQLLAEMQIAFVCFLQGQVFEGFEQWKRIIHLM-SCCPNSLGSEKELFMSFI 289

Query: 286 KVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLT 345
           +V+++QLK          E      +D   +S D+FL       FA ++D++    DL  
Sbjct: 290 RVLFFQLK----------ECPTDFFVD--IVSRDNFLTTTLSMLFANVRDSAHAGDDLKK 337

Query: 346 WTRKLRELLENSLGWEFQ 363
            T + ++ L N   W+F 
Sbjct: 338 KTAQFKQYLTNQFKWDFN 355

Caenorhabditis elegans (taxid: 6239)

>sp|Q9D2V5|AAR2_MOUSE Protein AAR2 homolog OS=Mus musculus GN=Aar2 PE=2 SV=3

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 201/405 (49%), Gaps = 48/405 (11%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A +L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF++YSS  +
Sbjct: 6   MDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLYYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + +E  P +GFF+      + V +W+  +E  V +S   EA       +L + D+ LGP
Sbjct: 66  ANPREVGPRMGFFLSLKQRGLTVLRWNAVQEE-VDLSPAPEAEVEAMRANLPDLDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSK 178
           Y  +   +W  L+++I+++ +E+++P   +I   ++       P   M+   D   +   
Sbjct: 125 YPYATLKKWISLTNFISEATMEKLQPESRQICAFSDV-----LPVLFMKHTKDRVGQNLP 179

Query: 179 FTASVDSSQKKG--------------CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESL 224
              +   S ++G                ++ +P  +   G    E+T  ++D +  LE++
Sbjct: 180 LCGTECRSYQEGLARLPEMRPRAGTEIRFSELPTQMFPAGATPAEITRHSMDLSYALETV 239

Query: 225 ITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTM 283
           ++K + G+   +LGELQFAF+ FL+G   EAF  WK L++LL  C SE+ +     L+  
Sbjct: 240 LSKQFPGNPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSESAMGKYHALYIS 297

Query: 284 FIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDL 343
            I ++Y+QL           E  A   +D   +S D+FL    + FF+     + V+  L
Sbjct: 298 LISILYHQLG----------EIPADFFVD--IVSQDNFLTSTLQVFFSSACSIA-VEATL 344

Query: 344 LTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
                K +  L     W+F            E ++ APVV  L E
Sbjct: 345 RKKAEKFQAHLTKKFRWDFTS----------EPEDCAPVVVELPE 379

Mus musculus (taxid: 10090)

>sp|O77682|AAR2_RABIT Protein AAR2 homolog OS=Oryctolagus cuniculus GN=AAR2 PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 181/401 (45%), Gaps = 87/401 (21%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF+ YS+   
Sbjct: 6   MDPELAKCLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSA--- 62

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
                                V K + QE                       D+ LGPY 
Sbjct: 63  ---------------------VDKANLQE----------------------LDQFLGPYP 79

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME-R 168
            +   +W  L+S+I+++ +ER++P   +I   ++             + +N P+   E +
Sbjct: 80  YATLKKWISLTSFISEATVERLQPESRQICAFSDVLPVLAMKHTKDRVGQNLPQCGTECK 139

Query: 169 ALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKN 228
           +  E L           ++ +   ++ +P  +   G    E+T  ++D +  LE ++ + 
Sbjct: 140 SYQEGLARLPEMKPRAGTEIR---FSELPTQMFPAGATPAEITRHSMDLSYALEMVLGRQ 196

Query: 229 YGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKV 287
           + GS   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I +
Sbjct: 197 FPGSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMVKHHALYVNLISI 254

Query: 288 IYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWT 347
           +Y+QL           E  A   +D   +S D+FL    + FF+    ++ VD  L    
Sbjct: 255 LYHQLG----------EIPADFFVD--IVSQDNFLTSTLQVFFS-SACSTAVDATLRKKA 301

Query: 348 RKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
            K +  L     W+F            E ++ APVV  L E
Sbjct: 302 EKFQAHLTKKFRWDFAA----------EPEDCAPVVVELPE 332

Oryctolagus cuniculus (taxid: 9986)

>sp|P32357|AAR2_YEAST A1 cistron-splicing factor AAR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AAR2 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 32/291 (10%)

Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62

Query: 68  IIG-FFIDAGPSEVIVRKWDQQE----ERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLS 122
            +G F+I   P + + +  ++++    E +V   +E +      V   + D+    Y L+
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQM----MVSYPKIDEDDTWYNLT 118

Query: 123 QYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTAS 182
           ++ +  ++   + K    +   +   +T   E+ ++K    S++++A       SK  A 
Sbjct: 119 EFVQMDKIRKIVRKDE-NQFSYVDSSMTTVQENELLK----SSLQKA------GSKMEAK 167

Query: 183 VDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQF 242
            +        YT I    +     G E+    LDK+  L +++ +    +     GELQF
Sbjct: 168 NEDDPAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQF 226

Query: 243 AFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
           AF+  +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 227 AFLNAMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

Involved in splicing pre-mRNA of the A1 cistron and other genes that are important for cell growth.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
255587433	409	Protein C20orf4, putative [Ricinus commu	1.0	0.948	0.766	1e-180
224065196	402	predicted protein [Populus trichocarpa]	1.0	0.965	0.781	1e-180
356551749	391	PREDICTED: uncharacterized protein C20or	0.994	0.987	0.788	1e-180
356501053	391	PREDICTED: uncharacterized protein C20or	0.994	0.987	0.780	1e-178
225453122	394	PREDICTED: uncharacterized protein C20or	0.997	0.982	0.764	1e-177
357492217	391	hypothetical protein MTR_5g079770 [Medic	0.994	0.987	0.742	1e-174
18408532	399	A1 cistron-splicing factor AAR2 [Arabido	0.997	0.969	0.735	1e-172
297841149	397	AAR2 protein family [Arabidopsis lyrata	0.997	0.974	0.738	1e-172
449476165	392	PREDICTED: protein AAR2 homolog [Cucumis	0.997	0.987	0.706	1e-163
30697362	355	A1 cistron-splicing factor AAR2 [Arabido	0.884	0.966	0.722	1e-149

>gi|255587433|ref|XP_002534269.1| Protein C20orf4, putative [Ricinus communis] gi|223525600|gb|EEF28112.1| Protein C20orf4, putative [Ricinus communis]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/394 (76%), Positives = 351/394 (89%), Gaps = 6/394 (1%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE AL+ VK GATLLLLDVPQYTLFGIDTQ+F+VGP+FKG+KMIPPG HFV+YSSSSR
Sbjct: 4   MDPETALDFVKQGATLLLLDVPQYTLFGIDTQVFTVGPAFKGVKMIPPGTHFVYYSSSSR 63

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGK+FSPIIGFF+DAGPSEVIVRKW +QEERLVKVSEEEE R++QAV SLEFD+ LGPY 
Sbjct: 64  DGKDFSPIIGFFVDAGPSEVIVRKWVRQEERLVKVSEEEEERFSQAVKSLEFDRNLGPYN 123

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSK-- 178
           L+QYGEWKRLS+Y+ K++IERIEPIGGEIT+ +ESG+ +++PK+ ME+ALDEQL+ SK  
Sbjct: 124 LNQYGEWKRLSNYVRKNVIERIEPIGGEITIESESGITRSSPKTAMEKALDEQLRNSKCS 183

Query: 179 FTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
            +ASVD ++K+GCYYTSIP V+K RG+   ELTSLNLDKTELLE+++ K+YGGSED L+G
Sbjct: 184 VSASVDKAEKRGCYYTSIPHVIKRRGIYSAELTSLNLDKTELLENILVKDYGGSEDLLIG 243

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQFAFIAFLMGQSLEAF QWKSLVSLL GC+EAPL TRS+LFT FIKVIYYQLKYGLQK
Sbjct: 244 ELQFAFIAFLMGQSLEAFFQWKSLVSLLLGCTEAPLRTRSRLFTKFIKVIYYQLKYGLQK 303

Query: 299 DR---NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLE 355
           D+   N    G S LLD+SW SADSFLH LCKDFF L+QDASVVDGDLLTWTRKL+ELLE
Sbjct: 304 DKAETNDAGVGVSTLLDESWFSADSFLHQLCKDFFLLVQDASVVDGDLLTWTRKLKELLE 363

Query: 356 NSLGWEFQQSSAV-DGMYFEENDEYAPVVEMLDE 388
           +SLGWEFQQ+SA+ DG+YFE+NDEYAPVV MLD+
Sbjct: 364 SSLGWEFQQNSAMDDGIYFEDNDEYAPVVVMLDD 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065196|ref|XP_002301711.1| predicted protein [Populus trichocarpa] gi|222843437|gb|EEE80984.1| predicted protein [Populus trichocarpa]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/393 (78%), Positives = 347/393 (88%), Gaps = 5/393 (1%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE ALELVK GATLLLLDVPQYTL GIDTQMF+VGP+FKGIKMIPPG HFV+YSSSS+
Sbjct: 1   MDPETALELVKQGATLLLLDVPQYTLVGIDTQMFTVGPAFKGIKMIPPGPHFVYYSSSSK 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGK+FSPI+GFF+DA PSEVIVRKW+QQEERLVKV E+EE R+ QAV SLEFD+ LGPY 
Sbjct: 61  DGKQFSPIVGFFVDADPSEVIVRKWNQQEERLVKVPEDEEERFCQAVKSLEFDRYLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LSQYGEWK+LSSY+TK+II+RIEPIGGEITV  ES M KN+PK+++ERAL  QL T KF+
Sbjct: 121 LSQYGEWKQLSSYLTKTIIKRIEPIGGEITVACESEMDKNSPKTSIERALHAQLGTGKFS 180

Query: 181 A--SVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
           A  SVD S+K+GCYYT+IPRV+K RGM+G+ELTSLNLDKTELLES++ K+YGGSED LLG
Sbjct: 181 ASTSVDRSKKRGCYYTTIPRVIKRRGMEGKELTSLNLDKTELLESVLIKDYGGSEDLLLG 240

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQFA+IAFLMGQSLEAF QWKSLVSLL  C EAP  TRS LFT FIKVI+YQLKYGLQK
Sbjct: 241 ELQFAYIAFLMGQSLEAFFQWKSLVSLLLSCIEAPFRTRSHLFTKFIKVIFYQLKYGLQK 300

Query: 299 DR---NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLE 355
           DR   NG     S+LLD+SW SADSFLH LCKDFF L+ DA+VVDGDLLTWTRKL+ELLE
Sbjct: 301 DRKESNGAGIAVSSLLDESWFSADSFLHRLCKDFFLLVLDATVVDGDLLTWTRKLKELLE 360

Query: 356 NSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           N LGWEFQQ+SAVDG+YFEE+DE+APVVEMLDE
Sbjct: 361 NILGWEFQQNSAVDGIYFEEDDEFAPVVEMLDE 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551749|ref|XP_003544236.1| PREDICTED: uncharacterized protein C20orf4 homolog [Glycine max]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/388 (78%), Positives = 342/388 (88%), Gaps = 2/388 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE ALELVKHG TLLLLDVPQYTL  +DTQMFSVGP+FKGIKMIPPGVHFV+YSSSSR
Sbjct: 1   MDPETALELVKHGVTLLLLDVPQYTLVAVDTQMFSVGPAFKGIKMIPPGVHFVYYSSSSR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFS IIGFFIDAGPSEVIVRKWDQQEERL+K+SEEEE RY+QAV +LEFD+QLGPY 
Sbjct: 61  DGKEFSSIIGFFIDAGPSEVIVRKWDQQEERLIKLSEEEEERYSQAVKNLEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LS Y +WK+LS++ITKS+IER+EPIGGEITV  E+ +++N  K  ME AL +QLK     
Sbjct: 121 LSHYEDWKQLSNFITKSVIERLEPIGGEITVECENEIVRNATKMPMEDALGKQLKVGNSA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            SV  SQ+KGCYYTSIP VVKC+G+ G+ELTSLNLDKT+LLE+L+ K+YGGSED LLGEL
Sbjct: 181 TSVGKSQRKGCYYTSIPHVVKCKGISGQELTSLNLDKTQLLETLLAKDYGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAF+AFLMGQSLEAFLQWKSLVSLLFGC+EAP  TR+ LFT FIKVIY QLKYGLQKD 
Sbjct: 241 QFAFVAFLMGQSLEAFLQWKSLVSLLFGCTEAPFRTRTHLFTKFIKVIYNQLKYGLQKDH 300

Query: 301 NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGW 360
            G ETG SALLDDSW+SADSFLHHLCKDFF+ + D SVVDGDLL WTRK +ELLE +LGW
Sbjct: 301 MG-ETG-SALLDDSWISADSFLHHLCKDFFSSLLDGSVVDGDLLKWTRKFKELLERNLGW 358

Query: 361 EFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           EFQQSSAVDGMYFEENDEYAPVVEMLD+
Sbjct: 359 EFQQSSAVDGMYFEENDEYAPVVEMLDD 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501053|ref|XP_003519343.1| PREDICTED: uncharacterized protein C20orf4 homolog [Glycine max]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/388 (78%), Positives = 340/388 (87%), Gaps = 2/388 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDP  ALELVKHG TLL LDVPQYTL  + TQMFSVGP+FKGIKMIPPG+HFV+YSSSSR
Sbjct: 1   MDPGTALELVKHGVTLLFLDVPQYTLVAVGTQMFSVGPTFKGIKMIPPGIHFVYYSSSSR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFSPIIGFFIDAGPSEVIVRKWDQQ+ERL+K+SEEEE RY+QAV +LEFD+QLGPY 
Sbjct: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQDERLIKLSEEEEERYSQAVKNLEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LS Y +WKRLS++ITKS+IER+EPIGGEITV  E+ +++NT K  ME ALD+QLK     
Sbjct: 121 LSHYEDWKRLSNFITKSVIERLEPIGGEITVECENEIVRNTTKMPMEEALDKQLKVGNSA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            SV  S++KGCYYTSIP VVKC+G+ G+ELTSLNLDKT LLE+L+TK+YG SED LLGEL
Sbjct: 181 TSVGKSRRKGCYYTSIPHVVKCKGISGQELTSLNLDKTHLLETLLTKDYGDSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAFIAFLMGQSLEAFLQWKSLVSLLFGC+EAP  TR+ LFT FIKVIY QLKYGLQKD 
Sbjct: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCTEAPFRTRTHLFTKFIKVIYNQLKYGLQKD- 299

Query: 301 NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGW 360
           +  ETG SALLDDSWLSADSFLHHLCKDFF+ + D SVVDGDLL WTRK +ELLE +LGW
Sbjct: 300 HMDETG-SALLDDSWLSADSFLHHLCKDFFSSLLDGSVVDGDLLNWTRKFKELLERNLGW 358

Query: 361 EFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           EFQQ SAVDG+YFEENDEYAPVVEMLD+
Sbjct: 359 EFQQGSAVDGIYFEENDEYAPVVEMLDD 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453122|ref|XP_002272712.1| PREDICTED: uncharacterized protein C20orf4 homolog [Vitis vinifera] gi|296087181|emb|CBI33555.3| unnamed protein product [Vitis vinifera]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 299/391 (76%), Positives = 350/391 (89%), Gaps = 4/391 (1%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           M+PE AL LV++GATLLLLDVPQ+TL GIDT MFSVGP FKGIKMIPPG HFV+YSSS+R
Sbjct: 1   MEPETALGLVRNGATLLLLDVPQFTLIGIDTLMFSVGPVFKGIKMIPPGPHFVYYSSSNR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DG +FSPI+GFFID  PSEVIVRKWDQQ+ERLVK+SEEEE RY Q+V SLEFD++LGPYT
Sbjct: 61  DGSKFSPIVGFFIDTCPSEVIVRKWDQQDERLVKLSEEEEERYCQSVKSLEFDRELGPYT 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LSQYG+WKRLS+ ITK+ IERIEPIGGEITV  ES M+ NTPK++ME+ALD+QL+ SKF+
Sbjct: 121 LSQYGDWKRLSNSITKTTIERIEPIGGEITVAHESEMVGNTPKTSMEKALDQQLRNSKFS 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            S D SQK+GCYYTSIPRV+K +G+ G+ELTSLNLDKT+LLES++ K+YGGSED LLGEL
Sbjct: 181 KSADKSQKRGCYYTSIPRVIKRKGIHGQELTSLNLDKTQLLESILMKDYGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAFIAFLMGQSLE FLQWKSLVSLLFGC+EAP HTRS LFT FI+VIYYQLK+G QKD+
Sbjct: 241 QFAFIAFLMGQSLEGFLQWKSLVSLLFGCNEAPFHTRSLLFTKFIRVIYYQLKFGFQKDQ 300

Query: 301 NGT---ETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENS 357
            G+   E  +S LLD+SWLSADSFLHHLCKDFF+L+Q+ASVVDGDLL+WTRKLR+LLEN+
Sbjct: 301 TGSSNVEKESSLLLDESWLSADSFLHHLCKDFFSLVQEASVVDGDLLSWTRKLRDLLENT 360

Query: 358 LGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           LGW+FQQ+S VDG+Y EE DE+APVVEML++
Sbjct: 361 LGWDFQQTSTVDGLYCEE-DEFAPVVEMLED 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492217|ref|XP_003616397.1| hypothetical protein MTR_5g079770 [Medicago truncatula] gi|355517732|gb|AES99355.1| hypothetical protein MTR_5g079770 [Medicago truncatula]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 288/388 (74%), Positives = 335/388 (86%), Gaps = 2/388 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MD + ALELVK+G TLL LDVPQYTL  IDTQ+FSVGP+FKGIKMIPPG HFV+YSSS+R
Sbjct: 1   MDSQTALELVKNGVTLLFLDVPQYTLVAIDTQVFSVGPTFKGIKMIPPGTHFVYYSSSTR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFSP+IGFFIDAGPSEVIVRKWDQQEERLVKVSEEE+ RY  AV ++EFD+QLGPY 
Sbjct: 61  DGKEFSPMIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEDERYRLAVKNMEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LS Y +WKRLS +ITKSIIER+EPIGGE++V  E+ M +N PK+ ME+ALD QLK     
Sbjct: 121 LSHYEDWKRLSDFITKSIIERLEPIGGEVSVECENDMFRNAPKTPMEKALDTQLKVDNSA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            SV   Q+KGCYYTSIPRVVKC+G+ G+ELTSLNLDKT+LLE+L+ K+YGGSED LLGEL
Sbjct: 181 TSVGKLQRKGCYYTSIPRVVKCKGISGQELTSLNLDKTQLLETLLVKDYGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAFIA +MGQSLEAFLQWKSLVSLL GC+EAP HTR++LFT FIKVIYYQLKYGLQKDR
Sbjct: 241 QFAFIALMMGQSLEAFLQWKSLVSLLLGCTEAPFHTRTRLFTKFIKVIYYQLKYGLQKDR 300

Query: 301 NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGW 360
              +     LLDDSW S DSFLHH CK+FF+L+ D SV+DGDLL WTRK ++LLE++LGW
Sbjct: 301 K--DNTGPLLLDDSWFSTDSFLHHHCKEFFSLVLDGSVIDGDLLKWTRKFKKLLESNLGW 358

Query: 361 EFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           EFQQ++AVDG+YF+ENDE+APVVEMLD+
Sbjct: 359 EFQQNNAVDGLYFDENDEFAPVVEMLDD 386

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408532|ref|NP_564876.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana] gi|30697360|ref|NP_849850.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana] gi|12322270|gb|AAG51165.1|AC074025_15 unknown protein [Arabidopsis thaliana] gi|15529200|gb|AAK97694.1| At1g66510/F28G11_5 [Arabidopsis thaliana] gi|16974373|gb|AAL31112.1| At1g66510/F28G11_5 [Arabidopsis thaliana] gi|332196396|gb|AEE34517.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana] gi|332196398|gb|AEE34519.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 287/390 (73%), Positives = 337/390 (86%), Gaps = 3/390 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MD E ALELVKHGATLL LDVPQYTL GIDTQ+F+VGP+FKGIKMIPPG+HFVFYSSS+R
Sbjct: 1   MDSEKALELVKHGATLLFLDVPQYTLVGIDTQIFAVGPAFKGIKMIPPGIHFVFYSSSTR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DG+EFSP IGFF+D  PS+VIVRKW+QQ+E L KVSEEEE RY+QAV SLEFDK LGPY 
Sbjct: 61  DGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           L QYGEW+ LS+YITK ++E+ EP+GGEITVT ES ++K  PK+ ME ALD Q+K SKFT
Sbjct: 121 LKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMEIALDTQMKKSKFT 180

Query: 181 ASVDSSQKKGC--YYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
            S  + Q KG   YYTSIPR++K +GM G+ELTS+NLDKT+LLES+++K Y  SED LLG
Sbjct: 181 TS-STEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLG 239

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQF+F+AFLMGQSLE+F+QWKS+VSLL GC+ AP  TRSQLFT FIKVIY+QLKYGLQK
Sbjct: 240 ELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFTKFIKVIYHQLKYGLQK 299

Query: 299 DRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSL 358
           + +G ETG  ALLDDSWL++DSFLH LCKDFFAL+++ SVVDGDLL+WTRK +ELLEN L
Sbjct: 300 ENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGDLLSWTRKFKELLENRL 359

Query: 359 GWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           GWEFQ+ SAVDG+YFEE+DEYAPVVEMLDE
Sbjct: 360 GWEFQKKSAVDGIYFEEDDEYAPVVEMLDE 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841149|ref|XP_002888456.1| AAR2 protein family [Arabidopsis lyrata subsp. lyrata] gi|297334297|gb|EFH64715.1| AAR2 protein family [Arabidopsis lyrata subsp. lyrata]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/390 (73%), Positives = 337/390 (86%), Gaps = 3/390 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MD E ALELVKHGATLL LDVPQ+TL GIDTQ+F+VGPSFKGIKMIPPG+HFVFYSSS+R
Sbjct: 1   MDSEKALELVKHGATLLFLDVPQHTLVGIDTQIFAVGPSFKGIKMIPPGIHFVFYSSSTR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFSP IGFF+D G S+VIVRKW+QQ+E L KV+EEEE RY+QAV SLEFDK LGPY 
Sbjct: 61  DGKEFSPTIGFFVDVGLSQVIVRKWNQQDEWLAKVTEEEEERYSQAVRSLEFDKHLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LSQYGEWK LS+YITK ++E+ EP+GGEITVT ES ++K  PK+ MERALD Q+K SKF 
Sbjct: 121 LSQYGEWKHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMERALDAQMKKSKFA 180

Query: 181 ASVDSSQKKGC--YYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
           AS  + Q KG   YYT+IPR++K +GM G+ELTS+NLDKT+LLESL++K Y  SED LLG
Sbjct: 181 AS-STEQPKGNRFYYTTIPRIIKHKGMSGQELTSMNLDKTQLLESLLSKEYKDSEDLLLG 239

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQF+F+AFLMGQSLE+F+QWKSLV+LL GC +AP HTRSQLFT F+KVIY+QLKYGLQK
Sbjct: 240 ELQFSFVAFLMGQSLESFMQWKSLVTLLLGCIDAPFHTRSQLFTNFMKVIYHQLKYGLQK 299

Query: 299 DRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSL 358
           + NG E G  ALLDDSWL++DSFLH LCKDFFAL+++ SVVDGDLL+W RK +ELLEN L
Sbjct: 300 ESNGPEMGIHALLDDSWLASDSFLHLLCKDFFALVEETSVVDGDLLSWIRKFKELLENRL 359

Query: 359 GWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           GWEFQ+ SA DG+YFEE+DEYAPVVEMLDE
Sbjct: 360 GWEFQKKSATDGIYFEEDDEYAPVVEMLDE 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476165|ref|XP_004154659.1| PREDICTED: protein AAR2 homolog [Cucumis sativus]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/389 (70%), Positives = 330/389 (84%), Gaps = 2/389 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE ALELVKHG T+LLLDVPQYTL GIDTQMFSVGPSFKGIKMIPPG HF++YSSSSR
Sbjct: 1   MDPETALELVKHGVTVLLLDVPQYTLVGIDTQMFSVGPSFKGIKMIPPGPHFLYYSSSSR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DG+EFSPI GFF+DAGPSEVIVR+WDQ+EERLVKV EEEE ++ +A+  LEFD+QLGPY 
Sbjct: 61  DGREFSPITGFFVDAGPSEVIVRRWDQREERLVKVLEEEEGQFREAIRRLEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           L QYGEWKR+S++I  + I+R+EPIGG+ITV  E G+ ++T KS +E+ LD+QLK SKF 
Sbjct: 121 LGQYGEWKRMSNHINSTTIKRLEPIGGDITVVCEPGISQSTSKSAVEKVLDDQLKGSKFA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
             VDSSQ +GCYY  IP V+K RG+ G+ELT LNLDKT LLE+ + K +GGSED LLGEL
Sbjct: 181 TPVDSSQSRGCYYAKIPHVIKQRGVHGQELTYLNLDKTLLLENQLKKYFGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAF+ FLMGQSLE FLQWKSLV+LLF C EAP  T SQLFT FIKVIY+QLK+GL+KDR
Sbjct: 241 QFAFVVFLMGQSLEGFLQWKSLVTLLFECREAPFCTMSQLFTKFIKVIYHQLKFGLEKDR 300

Query: 301 NGTETGASA-LLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLG 359
           +  + G+S+ LLD+SW SADSFLHHLCKDFF+L+ +A VVDGDLLTWTRKL+ELLEN LG
Sbjct: 301 SNDKAGSSSILLDESWFSADSFLHHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLG 360

Query: 360 WEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           W+F Q+ A+DG+ F+E+DE+APVV  +D+
Sbjct: 361 WKF-QNIAIDGISFDEDDEFAPVVVRMDD 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697362|ref|NP_849851.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana] gi|332196397|gb|AEE34518.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/346 (72%), Positives = 297/346 (85%), Gaps = 3/346 (0%)

Query: 45  MIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYT 104
           MIPPG+HFVFYSSS+RDG+EFSP IGFF+D  PS+VIVRKW+QQ+E L KVSEEEE RY+
Sbjct: 1   MIPPGIHFVFYSSSTRDGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYS 60

Query: 105 QAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKS 164
           QAV SLEFDK LGPY L QYGEW+ LS+YITK ++E+ EP+GGEITVT ES ++K  PK+
Sbjct: 61  QAVRSLEFDKNLGPYNLKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKT 120

Query: 165 TMERALDEQLKTSKFTASVDSSQKKGC--YYTSIPRVVKCRGMQGEELTSLNLDKTELLE 222
            ME ALD Q+K SKFT S  + Q KG   YYTSIPR++K +GM G+ELTS+NLDKT+LLE
Sbjct: 121 AMEIALDTQMKKSKFTTS-STEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLE 179

Query: 223 SLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFT 282
           S+++K Y  SED LLGELQF+F+AFLMGQSLE+F+QWKS+VSLL GC+ AP  TRSQLFT
Sbjct: 180 SVLSKEYKDSEDLLLGELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFT 239

Query: 283 MFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGD 342
            FIKVIY+QLKYGLQK+ +G ETG  ALLDDSWL++DSFLH LCKDFFAL+++ SVVDGD
Sbjct: 240 KFIKVIYHQLKYGLQKENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGD 299

Query: 343 LLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
           LL+WTRK +ELLEN LGWEFQ+ SAVDG+YFEE+DEYAPVVEMLDE
Sbjct: 300 LLSWTRKFKELLENRLGWEFQKKSAVDGIYFEEDDEYAPVVEMLDE 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
TAIR|locus:2028992	399	AT1G66510 "AT1G66510" [Arabido	0.997	0.969	0.694	1.9e-145
ZFIN|ZDB-GENE-040704-68	384	aar2 "AAR2 splicing factor hom	0.889	0.898	0.309	3e-37
MGI|MGI:1915545	384	Aar2 "AAR2 splicing factor hom	0.889	0.898	0.288	1.1e-32
WB|WBGene00008639	357	F10B5.2 [Caenorhabditis elegan	0.868	0.943	0.293	2.9e-32
ASPGD|ASPL0000006654	479	AN10758 [Emericella nidulans (	0.378	0.306	0.270	1.8e-10
SGD|S000000170	355	AAR2 "Component of the U5 snRN	0.677	0.740	0.229	1.1e-08

TAIR|locus:2028992 AT1G66510 "AT1G66510" [Arabidopsis thaliana (taxid:3702)]

 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 271/390 (69%), Positives = 316/390 (81%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             MD E ALELVKHGATLL LDVPQYTL GIDTQ+F+VGP+FKGIKMIPPG+HFVFYSSS+R
Sbjct:     1 MDSEKALELVKHGATLLFLDVPQYTLVGIDTQIFAVGPAFKGIKMIPPGIHFVFYSSSTR 60

Query:    61 DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYT 120
             DG+EFSP IGFF+D  PS+VIVRKW+QQ             RY+QAV SLEFDK LGPY 
Sbjct:    61 DGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYN 120

Query:   121 LSQYGEWKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
             L QYGEW+ LS+YITK             TVT ES ++K  PK+ ME ALD Q+K SKFT
Sbjct:   121 LKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMEIALDTQMKKSKFT 180

Query:   181 ASVDSSQKKG--CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
              S  + Q KG   YYTSIPR++K +GM G+ELTS+NLDKT+LLES+++K Y  SED LLG
Sbjct:   181 TS-STEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLG 239

Query:   239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
             ELQF+F+AFLMGQSLE+F+QWKS+VSLL GC+ AP  TRSQLFT FIKVIY+QLKYGLQK
Sbjct:   240 ELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFTKFIKVIYHQLKYGLQK 299

Query:   299 DRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSL 358
             + +G ETG  ALLDDSWL++DSFLH LCKDFFAL+++ SVVDGDLL+WTRK +ELLEN L
Sbjct:   300 ENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGDLLSWTRKFKELLENRL 359

Query:   359 GWEFQQSSAVDGMYFEENDEYAPVVEMLDE 388
             GWEFQ+ SAVDG+YFEE+DEYAPVVEMLDE
Sbjct:   360 GWEFQKKSAVDGIYFEEDDEYAPVVEMLDE 389

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ZFIN|ZDB-GENE-040704-68 aar2 "AAR2 splicing factor homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 116/375 (30%), Positives = 178/375 (47%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             MDPE A  L + GATL+LL VP+ T  G+D + +++GP F+G+KMIPPG+HF+ Y S S 
Sbjct:     6 MDPEVARGLFEEGATLVLLGVPEGTELGLDYKTWTLGPRFRGVKMIPPGLHFLHYCSVST 65

Query:    61 DGK--EFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGP 118
             +G   E SP  G F+   P +V+V  W++                 +A    E D+ LGP
Sbjct:    66 NGGCGEISPKTGLFLSLKPRQVLVAHWNKSADDLEISQNSEEVERVRANLK-ELDRYLGP 124

Query:   119 YTLSQYGEW----KRLSSYITKSXXXXXXXXXXXXTVTAESGMM--KNTPKSTMERALDE 172
             Y      +W     RLS  +  +             V  E  +   K+  +  + R  D+
Sbjct:   125 YPYDTLRKWVSLTDRLSQEVAVALQPLSGRVCAFSDVIPELQLTHTKDRVQQNLSRN-DQ 183

Query:   173 QLKTSK--FTASVDSSQKKGCY--YTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKN 228
             + ++ K          Q++G    ++SIP+     G    ++T  ++D++  L +++ ++
Sbjct:   184 ECQSMKEGLDRLPRMKQREGTELRFSSIPKQAYPPGATPAQITQYSMDRSYTLNAVLERH 243

Query:   229 YGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKV 287
             Y      +LGELQFAF+ FL+G   EAF  WKSL++LL  C SE  +  R +L+   I V
Sbjct:   244 YKEQPLNVLGELQFAFVCFLVGNVYEAFEHWKSLLALL--CRSEEAMKDRKELYLGLIAV 301

Query:   288 IYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWT 347
             +Y+QL         G E      LD   +S  +FL    +DFF       V D  L    
Sbjct:   302 LYHQL---------G-EIPPDFFLDI--VSQSNFLTSTLQDFFQFASSPGV-DSTLRKRA 348

Query:   348 RKLRELLENSLGWEF 362
              K +  L     W+F
Sbjct:   349 EKFKVHLTKKFRWDF 363

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1915545 Aar2 "AAR2 splicing factor homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 108/375 (28%), Positives = 183/375 (48%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             MDPE A +L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF++YSS  +
Sbjct:     6 MDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLYYSSVDK 65

Query:    61 -DGKEFSPIIGFFIDAGPSEVIVRKWDQ-QXXXXXXXXXXXXARYTQAVCSLEFDKQLGP 118
              + +E  P +GFF+      + V +W+  Q                +A    + D+ LGP
Sbjct:    66 ANPREVGPRMGFFLSLKQRGLTVLRWNAVQEEVDLSPAPEAEVEAMRANLP-DLDQFLGP 124

Query:   119 YTLSQYGEWKRLSSYITKSXXXXXXXXXXXXTVTAESG---MMKNTPKSTMERALD---- 171
             Y  +   +W  L+++I+++               ++      MK+T K  + + L     
Sbjct:   125 YPYATLKKWISLTNFISEATMEKLQPESRQICAFSDVLPVLFMKHT-KDRVGQNLPLCGT 183

Query:   172 EQLKTSKFTASVDSSQKKG---CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKN 228
             E     +  A +   + +      ++ +P  +   G    E+T  ++D +  LE++++K 
Sbjct:   184 ECRSYQEGLARLPEMRPRAGTEIRFSELPTQMFPAGATPAEITRHSMDLSYALETVLSKQ 243

Query:   229 YGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKV 287
             + G+   +LGELQFAF+ FL+G   EAF  WK L++LL  C SE+ +     L+   I +
Sbjct:   244 FPGNPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSESAMGKYHALYISLISI 301

Query:   288 IYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWT 347
             +Y+QL         G E  A   +D   +S D+FL    + FF+     +V +  L    
Sbjct:   302 LYHQL---------G-EIPADFFVDI--VSQDNFLTSTLQVFFSSACSIAV-EATLRKKA 348

Query:   348 RKLRELLENSLGWEF 362
              K +  L     W+F
Sbjct:   349 EKFQAHLTKKFRWDF 363

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00008639 F10B5.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 110/375 (29%), Positives = 174/375 (46%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             + PE    + ++GA LL L  PQ + FGID + +  G  F G+KMIPPGVHFV+ S  S 
Sbjct:     5 LPPEIVDYMYRNGAFLLFLGFPQASEFGIDYKSWKTGEKFMGLKMIPPGVHFVYCSIKS- 63

Query:    61 DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLE-FDKQLGPY 119
                  +P IGFF +    E++V+KW+ +             + ++    L+  D  L PY
Sbjct:    64 -----APRIGFFHNFKAGEILVKKWNTESETFEDEEVPTD-QISEKKRQLKNMDSSLAPY 117

Query:   120 TLSQYGEWKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKF 179
                 Y  W  L+ +IT              T  AE   + +     ME A +++ K S F
Sbjct:   118 PYENYRSWYGLTDFITADTVERIHPILGRITSQAE---LVSLETEFMENA-EKEHKDSHF 173

Query:   180 TASVDSSQKKGCYYTS---IPRVVKCR-G--MQGEELTSLNLDKT----ELLESL--ITK 227
                VD        +T    +P ++K R G  ++ +++  L + +     E  + L  + +
Sbjct:   174 RNRVDRENPVRTRFTDQHGLP-IMKIREGYEIRFQDIPPLTVSQNRVGIEYSDRLYRLLR 232

Query:   228 NYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKV 287
               GG    LL E+Q AF+ FL GQ  E F QWK ++ L+  C  + L +  +LF  FI+V
Sbjct:   233 ALGGDWKQLLAEMQIAFVCFLQGQVFEGFEQWKRIIHLMSCCPNS-LGSEKELFMSFIRV 291

Query:   288 IYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWT 347
             +++QLK          E      +D   +S D+FL       FA ++D++    DL   T
Sbjct:   292 LFFQLK----------ECPTDFFVDI--VSRDNFLTTTLSMLFANVRDSAHAGDDLKKKT 339

Query:   348 RKLRELLENSLGWEF 362
              + ++ L N   W+F
Sbjct:   340 AQFKQYLTNQFKWDF 354

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

ASPGD|ASPL0000006654 AN10758 [Emericella nidulans (taxid:162425)]

 Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 47/174 (27%), Positives = 72/174 (41%)

Query:   233 EDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQL 292
             E  +LGELQF F+  L   +     QWK L+ L+  C  A +  R+      ++++  QL
Sbjct:   311 EAQILGELQFTFLMGLTLMNYSCLQQWKRLLGLILTCRSA-ITDRAPFMAEALRLLLTQL 369

Query:   293 KYGLQKDRNGTETGA-SALLDDSWLSADSFLHHLCKDF----FALIQDASVVDGDLLTWT 347
             K       +  E G    L ++       FL  L K F    + +++D    +  +    
Sbjct:   370 KRA-----DDVEGGLFDQLGNEGGAEGGEFLRRLLKGFRTAMYEVLEDRG--ESPVKREF 422

Query:   348 RKLRELLENSLGWEFQQSSAV--------DG------MYFEENDEYAPVVEMLD 387
              KL E +   L WE  + + +        DG      M   E +EYAPVV  LD
Sbjct:   423 GKLEEWVRRELDWELDRDAVLRKGMVQLEDGEEVELEMVDHEEEEYAPVVVELD 476

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000000170 AAR2 "Component of the U5 snRNP complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 66/287 (22%), Positives = 119/287 (41%)

Query:    15 TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
             T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct:     3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62

Query:    68 IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
              +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct:    63 RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122

Query:   127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
               ++   + K             TV  E+ ++K    S++++A       SK  A  +  
Sbjct:   123 MDKIRKIVRKDENQFSYVDSSMTTVQ-ENELLK----SSLQKA------GSKMEAKNEDD 171

Query:   187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                   YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct:   172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230

Query:   247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
              +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct:   231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKLD----EILYYQIK 273


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      388       364   0.00083  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  244 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.94u 0.19s 26.13t   Elapsed:  00:00:01
  Total cpu time:  25.94u 0.19s 26.13t   Elapsed:  00:00:01
  Start:  Sat May 11 11:15:07 2013   End:  Sat May 11 11:15:08 2013

GO:0003674 "molecular_function" evidence=ND

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IMP

GO:0005682 "U5 snRNP" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R5N9	AAR2_PONAB	No assigned EC number	0.3027	0.9252	0.9348	yes	no
Q09305	AAR2_CAEEL	No assigned EC number	0.3121	0.8659	0.9411	yes	no
Q08DJ7	AAR2_BOVIN	No assigned EC number	0.3022	0.9149	0.9244	yes	no
Q9Y312	AAR2_HUMAN	No assigned EC number	0.3027	0.9252	0.9348	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002334 hypothetical protein (402 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	388
pfam05282	339	pfam05282, AAR2, AAR2 protein	8e-98

>gnl|CDD|218536 pfam05282, AAR2, AAR2 protein

 Score =  294 bits (754), Expect = 8e-98
 Identities = 135/353 (38%), Positives = 184/353 (52%), Gaps = 19/353 (5%)

Query: 14  ATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFI 73
           ATLL+LD+P+ TL GID   F+VGP+FKGIKMIPPGVHF+ YSS      E S   GFF 
Sbjct: 2   ATLLILDLPEGTLVGIDLSSFTVGPNFKGIKMIPPGVHFLHYSS--AKNGESSLRYGFFF 59

Query: 74  DAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGE-WKRLSS 132
              P EV+V KWD ++E LV   E EE  Y +     EFD+ LGPY      + WK L+S
Sbjct: 60  YVKPGEVLVLKWDSKDETLVPEEESEEEDYRERANLGEFDQYLGPYPYEDESKDWKSLTS 119

Query: 133 YITKSIIERIEPIGGEITVTAE--SGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKG 190
           YIT+ ++ RIEPI G    +    S       +        E+        + +    + 
Sbjct: 120 YITEEVLSRIEPINGTSRESWYVDSSSTTKE-EDRSLPEESEKKSEDDSGINKEVEGSE- 177

Query: 191 CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMG 250
            Y+T IP+     G    E+T  +LDK+  LE +I + Y  +E  LLGELQFAF+ FL+ 
Sbjct: 178 LYFTPIPKRKWPEGATPAEITEDSLDKSWYLEEVIAQEYDNNESLLLGELQFAFLNFLLL 237

Query: 251 QSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL 310
            + E+F QWK L+ LL       +    +LF   +KV+Y+QLK          E   S  
Sbjct: 238 GNYESFEQWKRLLELLCNSESL-VTKHPELFIKLLKVLYHQLK----------ELP-SDF 285

Query: 311 LDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQ 363
             D+ LS D+FL  L K+ F +  D  +V G L +   KL+  L+   GW+  
Sbjct: 286 FFDTLLSEDNFLLSLLKNLFEIEVDDELVRGTLKSKLEKLKASLKKKFGWDLD 338

This family consists of several eukaryotic AAR2-like proteins. The yeast protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth. Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
KOG3937	371	consensus mRNA splicing factor [RNA processing and	100.0
PF05282	362	AAR2: AAR2 protein; InterPro: IPR007946 This famil	100.0

>KOG3937 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=1.6e-97  Score=707.09  Aligned_cols=363  Identities=42%  Similarity=0.675  Sum_probs=323.6

Q ss_pred             CCHHHHHHHHhcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeE
Q 016504            1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEV   80 (388)
Q Consensus         1 md~~~a~~l~~~g~~llll~lP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~~v   80 (388)
                      ||||.|.+|+.+|+||+++|+|.||+||||++||++||+|+||||||||+||||||+..+.|    ||+|||+.++++++
T Consensus         1 mdpe~a~~l~~~gatl~flg~P~~t~~GID~~s~~vgpkF~GIKmIPpGVHfv~yss~~~ag----pr~Gff~~~h~~~~   76 (371)
T KOG3937|consen    1 MDPELALRLLADGATLVFLGVPQGTEFGIDQYSYEVGPKFRGIKMIPPGVHFVHYSSADPAG----PRIGFFHDVHPGEI   76 (371)
T ss_pred             CCHHHHHHHHhcCCEEEEecCccceEecceeeeeecCCCCCCccccCCceEEEEeecCCCCC----CeeEEEEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999876654    99999999999999


Q ss_pred             EEEEecccccccccCChH--HHHHHHHhhcchhhhccCcccCchhhhhHHHhhccCCHhhhccccccCCceeEeeecccc
Q 016504           81 IVRKWDQQEERLVKVSEE--EEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMM  158 (388)
Q Consensus        81 ~V~~Wd~~~E~l~~~~~~--~~~r~~~~l~~~~~d~~L~pYp~~~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~  158 (388)
                      +|++||++.|++...++.  +..+.+.|++  ++|+.|+|||++.++.|..||++||.++|+||.|.+|+|++..++...
T Consensus        77 ~v~~wd~~~E~~~~~~~~e~e~~~~~~nl~--e~d~~l~pYpy~~~~~W~~LT~fIt~d~Veri~p~~g~i~~~~d~~~~  154 (371)
T KOG3937|consen   77 YVRKWDTKDETLKMEEEPEVERDEIRHNLK--ELDMMLAPYPYEEYKTWYNLTNFITEDTVERIVPTEGNIFSYVDSSSL  154 (371)
T ss_pred             EEEeccccchhhhcccCchhHHHHHHHHHH--HHhhccCCCChhhhhhHHHHhhhhhHHHHHhheecCCcEEEEEeeeee
Confidence            999999999988743333  3356666776  899999999999999999999999999999999999999998887655


Q ss_pred             cCCCCchHHHHHHHHhhccccccccCCCCCCC--ceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhH
Q 016504          159 KNTPKSTMERALDEQLKTSKFTASVDSSQKKG--CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTL  236 (388)
Q Consensus       159 ~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~--~~ft~ip~~~~~~~~~~~e~T~~~~DkS~~L~~vl~~~~~~~~~~l  236 (388)
                      .+.+...++-.+..++...+. ..|++++.++  +|||.||+..++.|++|.|+|+++|||||+|+.|+.+.+.+++..+
T Consensus       155 ~~~~~v~~~~~~~~~~s~~e~-~lp~~k~~~g~~lrft~iP~~~~~~~a~g~E~s~~~lDksy~l~~vl~~~~~~n~~~l  233 (371)
T KOG3937|consen  155 TVGDRVLQEISLQKRGSKDEG-KLPDLKPRAGTELRFTVIPFLSVPQGATGAEMSKHALDKSYLLETVLLGGWFDNPDNL  233 (371)
T ss_pred             cCCcccccccccccccccccc-cccccCCCcccceeeeecCcccccCCCCchhhhhhhhhHHHHHHHHHhcccCCCHHHH
Confidence            555555554444333222221 2566666655  9999999999999999999999999999999999999999999999


Q ss_pred             HHhHhHHHHHHHhhccHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHccccccCCCCCCCCCccccCCccc
Q 016504          237 LGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWL  316 (388)
Q Consensus       237 LGELQfaFl~fl~g~~~~s~eQWk~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~~~~~~~~~~~~dff~d~~~~  316 (388)
                      ||||||||||||+|+||+||+|||+||+|||.|+.+ +.+|+.+|.+||++|++||+.+|          +++|+++  +
T Consensus       234 lgELQfAFv~fl~g~~yesfeqWk~ml~LL~~S~a~-~~kh~~ly~kfievlyhQLk~~p----------~dl~~~~--l  300 (371)
T KOG3937|consen  234 LGELQFAFVCFLFGQSYESFEQWKRMLSLLLCSSAA-VPKHKELYMKFIEVLYHQLKELP----------EDLFVSI--L  300 (371)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-ccccHHHHHHHHHHHHHHhccCh----------HHhhcch--h
Confidence            999999999999999999999999999999966655 89999999999999999999987          4899877  9


Q ss_pred             CccchHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHhCccccccccccCCccCCCCCCCceEEecCC
Q 016504          317 SADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDGMYFEENDEYAPVVEMLDE  388 (388)
Q Consensus       317 s~~nfL~~~L~~f~~~~~~~~~~~~~l~~~~~~l~~~l~~~f~w~~~~~~~~~g~~~deddE~aPvvV~l~~  388 (388)
                      +++|||+.+|+.|++++.+++.+.++|++.+.+|++.++++|||+|.++.     +.+||||+|||||++++
T Consensus       301 ~~dn~l~~~l~~~f~n~~~~s~~~~~L~k~~~~fk~~le~~lgw~f~~~~-----~~~Ed~E~~pvVi~l~e  367 (371)
T KOG3937|consen  301 SEDNFLTSLLSSLFANVLDGSEAIMDLLKKAEKFKDNLEKQLGWEFSGEE-----YDDEDDEHAPVVIELPE  367 (371)
T ss_pred             ccccchHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHhcccccccc-----cccCCcccCCeEEeccc
Confidence            99999999999999999998889999999999999999999999998643     34789999999999985

>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins

Probab=100.00  E-value=4.7e-87  Score=667.34  Aligned_cols=342  Identities=46%  Similarity=0.736  Sum_probs=206.9

Q ss_pred             hcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEeccccc
Q 016504           11 KHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEE   90 (388)
Q Consensus        11 ~~g~~llll~lP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~~v~V~~Wd~~~E   90 (388)
                      ++||+|||+|||+||+||||+++|++||+|+||||||||+||||||+..+++ +.++|+|||+++++++|+|+|||+++|
T Consensus         1 ~~g~~llll~vP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~~-~~~~R~G~f~~~~~~~v~V~kWd~~~E   79 (362)
T PF05282_consen    1 EEGATLLLLDVPEGTEFGIDYKSFTVGPNFKGIKMIPPGVHFIHYSSSSKNG-ESSPRYGFFFNFKPGEVIVRKWDPENE   79 (362)
T ss_dssp             ---EEEEBS---S-EEEEETTEEEEE-TT--EEEEE-TT-EEEEEE---ETT-ECCEEEEEEE-CCC--EEEEEEETTTT
T ss_pred             CcceEEEEeCCCCCcEEEEcceEEEcCCCceEEecCCCCceEEEEecccCCC-CcCceEEEEEEeeCCEEEEEEeCCCcC
Confidence            5899999999999999999999999999999999999999999999655555 789999999999999999999999999


Q ss_pred             ccccCCh--HHHHHHHHhhcchhhhccCcccCchhhh-hHHHhhccCCHhhhccccccCCceeEeee----cccccCCCC
Q 016504           91 RLVKVSE--EEEARYTQAVCSLEFDKQLGPYTLSQYG-EWKRLSSYITKSIIERIEPIGGEITVTAE----SGMMKNTPK  163 (388)
Q Consensus        91 ~l~~~~~--~~~~r~~~~l~~~~~d~~L~pYp~~~~~-~W~~LT~~It~~~l~Ri~p~~g~i~~~~e----~~~~~~~~~  163 (388)
                      .|...+.  ++.++++...+..++|++|+|||++.+. +|++||+|||+++|+||.|.+|.+++..+    ...+.++++
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~l~~~d~~L~pYP~~~~~~~W~~LT~~It~~~l~ri~p~~~~i~~~~~~~~~~~~v~~~~~  159 (362)
T PF05282_consen   80 DLVDEPESEEEEERYRQRVNLKEFDKYLGPYPYEDYSDKWKSLTSYITEEVLERITPVNGTISSATESPSESWYVDSSSS  159 (362)
T ss_dssp             EEEEEEE----HHHHHHHHCHHHHCTTSEE----TTT-HHHHHHTT--HHHHHHHC--T---------T-SSEEEETT-E
T ss_pred             ceeccccccchHHHHHHHHhHHHHHhhcCCcCCchhhchHHHHhhhCCHHHHhhhcCCCccccccccccccccccCCCcC
Confidence            9987655  3334443333334999999999998876 99999999999999999999988877552    112222322


Q ss_pred             chHHHHHHHH------hhccccccccCCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHH-------HhhcC
Q 016504          164 STMERALDEQ------LKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLI-------TKNYG  230 (388)
Q Consensus       164 ~~~e~~l~~~------~~~~~~~~~~~~~~~~~~~ft~ip~~~~~~~~~~~e~T~~~~DkS~~L~~vl-------~~~~~  230 (388)
                      +..|......      .........+...+.+.++||.||+..+|+|++|+|+|+++|||||+|+++|       .+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ft~i~~~~~~~~~~~~e~T~~~~DkS~~L~~vi~~~~~~~~~~~~  239 (362)
T PF05282_consen  160 SKEENRSLPELSESRKKSEDDPSIQSEQDPGTELRFTPIPKRKWPPGATPSERTEDSLDKSWYLEEVIQRGYIELPKDYG  239 (362)
T ss_dssp             ECCCCCCT---------------------GGGCE-------TTSCCCS-TT-HHHHHH-THHHHHCCC-------CCCCC
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEeeecccCCCCCCHHHHHHHhccHHHHHHHHHHhhhcccccccC
Confidence            2222211110      0000000001101245599999998999999999999999999999999999       77889


Q ss_pred             CChhhHHHhHhHHHHHHHhhccHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHccccccCCCCCCCCCccc
Q 016504          231 GSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL  310 (388)
Q Consensus       231 ~~~~~lLGELQfaFl~fl~g~~~~s~eQWk~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~~~~~~~~~~~~dff  310 (388)
                      +++.+|||||||||||||+|+||+||+|||+||+|||+|+++ +.+||+||.+|+++|++||+.+|+          ++|
T Consensus       240 ~~~~~lLGELQfaFv~fl~~~n~~s~eQWk~ll~Ll~~~~~~-v~~~~~l~~~~l~~L~~QL~~~p~----------d~~  308 (362)
T PF05282_consen  240 GDEDELLGELQFAFVNFLLGQNYSSFEQWKSLLELLCNCESA-VSEHPDLFIKFLRVLHAQLKELPE----------DFF  308 (362)
T ss_dssp             SSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHT--S----HH--HHHHHHHHHHHHHHCCGH----------CCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcch----------hhe
Confidence            999999999999999999999999999999999999999888 889999999999999999998774          678


Q ss_pred             cCCcccCccchHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHhCccccc
Q 016504          311 LDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQ  364 (388)
Q Consensus       311 ~d~~~~s~~nfL~~~L~~f~~~~~~~~~~~~~l~~~~~~l~~~l~~~f~w~~~~  364 (388)
                      +|+++++.+|||+.+|+.++.++.+...+.+.|++++++|++++++||||+|++
T Consensus       309 ~d~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~kfgWdl~~  362 (362)
T PF05282_consen  309 FDISILSSDNFLRKLLKNLFENESDNTEVQEALKKAFEKLEKWLKEKFGWDLDD  362 (362)
T ss_dssp             --HHHHHHTSTTCCC-HHHHHHHHH-----------------------------
T ss_pred             eccccccCcchHHHHHHHHHhhhhccccccccccccccccccccccccccccCC
Confidence            777668899999999999988888777889999999999999999999999973

The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
3zef_A	355	Crystal Structure Of Prp8:aar2 Complex: Second Crys		2e-09
3sbt_B	363	Crystal Structure Of A Aar2-prp8 Complex Length = 3		2e-09
4i43_A	384	Crystal Structure Of Prp8:aar2 Complex Length = 384		3e-09

>pdb|3ZEF|A Chain A, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form At 3.1 Angstrom Resolution Length = 355

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68  IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
            +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
             ++   + K             TV     +     KS++++A       SK  A  +  
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                 YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
            +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

>pdb|3SBT|B Chain B, Crystal Structure Of A Aar2-prp8 Complex Length = 363

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68  IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
            +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
             ++   + K             TV     +     KS++++A       SK  A  +  
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                 YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
            +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

>pdb|4I43|A Chain A, Crystal Structure Of Prp8:aar2 Complex Length = 384

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68  IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
            +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
             ++   + K             TV     +     KS++++A       SK  A  +  
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                 YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
            +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
3sbt_B	363	A1 cistron-splicing factor AAR2; rnaseh like domai	1e-88
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A Length = 363

 Score =  271 bits (693), Expect = 1e-88
 Identities = 70/373 (18%), Positives = 136/373 (36%), Gaps = 33/373 (8%)

Query: 15  TLLLLDVPQYTLFGIDTQMFSV--GPSFKGIKMIPPG-VHFVFYSSSSRDGKEFSPIIGF 71
           T+     P     GID   F+V     F GIK IP G VH + +  +       S   G+
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHAD----NSSMRYGY 58

Query: 72  FIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPY-TLSQYGEWKRL 130
           + D       ++ +D ++     + E + A++   V + +  + +  Y  + +   W  L
Sbjct: 59  WFDCRMGNFYIQ-YDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNL 117

Query: 131 SSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKG 190
           + ++    I +I           +S M        ++ +L +    SK  A  +      
Sbjct: 118 TEFVQMDKIRKIVRKDENQFSYVDSSMTTVQENELLKSSLQK--AGSKMEAKNEDDPAHS 175

Query: 191 CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMG 250
             YT I    +   ++        LDK+  L +++ +    +     GELQFAF+  +  
Sbjct: 176 LNYTVINFKSR-EAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFF 234

Query: 251 QSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL 310
            +  + LQW +++ L+   +  P      +     +++YYQ+K  L +            
Sbjct: 235 GNYGSSLQWHAMIELICSSATVP----KHMLDKLDEILYYQIKT-LPEQ----------- 278

Query: 311 LDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWTRKLRELLENSLGWEFQQSSAVDG 370
             D  L+ +   +      F      + +         K  ELL      +       D 
Sbjct: 279 YSDILLN-ERVWNICLYSSFQ----KNSLHNTEKIMENKYPELLGKDNEDDALIYGISDE 333

Query: 371 MYFEENDEYAPVV 383
              +E+DE+ P +
Sbjct: 334 ERDDEDDEHNPTI 346

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 69/256 (26%)

Query: 154 ESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTS-IPRVVKCRGMQGEELTS 212
           E+G  +   K  +    D       F  + D      C     +P+ +    +  EE+  
Sbjct: 10  ETGEHQYQYKDILSVFED------AFVDNFD------CKDVQDMPKSI----LSKEEIDH 53

Query: 213 LNLDKTE------LLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLL 266
           + + K        L  +L++K     +  +   L+  +  FLM   ++   +  S+++ +
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLM-SPIKTEQRQPSMMTRM 111

Query: 267 FGCSEAPLHTRSQLFT-MFIKVI--YYQLKYGLQKDRNGTE--------TG-----ASAL 310
           +      L+  +Q+F    +  +  Y +L+  L + R            +G         
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 311 LDDS----------WLSA-------------DSFLHHLCKDFFALIQDASVVDGDLLTWT 347
           L             WL+                 L+ +  ++ +    +S +   + +  
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 348 RKLRELL-----ENSL 358
            +LR LL     EN L
Sbjct: 232 AELRRLLKSKPYENCL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
3sbt_B	363	A1 cistron-splicing factor AAR2; rnaseh like domai	100.0

>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A

Probab=100.00  E-value=2e-75  Score=574.80  Aligned_cols=288  Identities=20%  Similarity=0.315  Sum_probs=235.3

Q ss_pred             EEEEccCCCceEEeeecccccc--CCCeeeEeecCCc-ceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEecccccc
Q 016504           15 TLLLLDVPQYTLFGIDTQMFSV--GPSFKGIKMIPPG-VHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEER   91 (388)
Q Consensus        15 ~llll~lP~gt~~GID~~sf~~--~~~F~GIK~IPpG-~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~~v~V~~Wd~~~E~   91 (388)
                      |||++|||+|++||||+++|++  ||+|+|||||||| +||||||++ +.   .++|+|||+++++++|+ ++||+++|.
T Consensus         3 tlllldlP~gt~~GID~~sftv~~g~~F~GIK~IPpG~~Hfih~s~~-e~---~s~R~Gfw~~~~~~~v~-~~WD~~~E~   77 (363)
T 3sbt_B            3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHA-DN---SSMRYGYWFDCRMGNFY-IQYDPKDGL   77 (363)
T ss_dssp             EEEBSCCCSCEEEEETTEEEEECTTCCCCEEEEECTTSCEEEEEEET-TE---EEEEEEEEECGGGCEEE-EEEETTTTE
T ss_pred             eEEecCCCCCcEEeeeccEEEcCCCCCCcceecCCCCCCEEEEEecC-CC---CCcceEEEEEeeCCeEE-EEEcCCcce
Confidence            7999999999999999999999  7999999999999 999999985 22   27999999999999999 799999999


Q ss_pred             cccCChHHHHHHHHhhcchhhhccCcccCch-hhhhHHHhhccCCHhhhccccccCCceeEeeecccccCCCCchHHH-H
Q 016504           92 LVKVSEEEEARYTQAVCSLEFDKQLGPYTLS-QYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMER-A  169 (388)
Q Consensus        92 l~~~~~~~~~r~~~~l~~~~~d~~L~pYp~~-~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~~~~~~~~~e~-~  169 (388)
                      +...++++.+||++++++++||++|+|||.+ .++.|++||+|||+++|+||.|.+|.++..+++.     ..+..|. .
T Consensus        78 l~~~~~~e~~r~~~~l~~~~fd~~L~pYP~~~~~~~W~~LT~~It~~~l~Ri~~~~g~~~~~vdSs-----~~s~eE~~~  152 (363)
T 3sbt_B           78 YKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQMDKIRKIVRKDENQFSYVDSS-----MTTVQENEL  152 (363)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCSEECCCCTTCCHHHHHHTTCCHHHHHHHSCCTTCSSEEEETT-----CEETTTSTT
T ss_pred             eccCcchHHHHHHHHHHhhhhcccccCCCCccchhhHHHHHhhCCHHHHhhccCCCCCeEEEecCC-----CcchhhHHH
Confidence            9876666678999999988889999999998 8999999999999999999999988876655431     1111222 1


Q ss_pred             HHHHhhccccc-ccc-CCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhHHHhHhHHHHHH
Q 016504          170 LDEQLKTSKFT-ASV-DSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAF  247 (388)
Q Consensus       170 l~~~~~~~~~~-~~~-~~~~~~~~~ft~ip~~~~~~~~~~~e~T~~~~DkS~~L~~vl~~~~~~~~~~lLGELQfaFl~f  247 (388)
                      +.+.+...... ..+ ...+.+.++||.||.+ ++++++|+|+|++++||||+|+++|.+.+.++..+||||||||||++
T Consensus       153 L~~~L~~~~~~~~~~~~~~~~~~l~Ft~i~~k-~~~~~~~~e~T~~~~D~S~~L~~li~~~~~~~~~~lLGELQfaFv~~  231 (363)
T 3sbt_B          153 LKSSLQKAGSKMEAKNEDDPAHSLNYTVINFK-SREAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNA  231 (363)
T ss_dssp             C-----------------CGGGEECCCCCCTT-STTTCCTTCHHHHHHCTHHHHHCCCCCCCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCccccccccCCCCCceeeccccCCC-CcccCChHHHHHHhhhHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence            22222211000 001 1123455999999855 45799999999999999999999998764445599999999999955


Q ss_pred             HhhccHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHccccccCCCCCCCCCccccCCcccCccchHHHHHH
Q 016504          248 LMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCK  327 (388)
Q Consensus       248 l~g~~~~s~eQWk~Ll~Ll~~~~~a~i~~~~~l~~~fl~~L~~QL~~~~~~~~~~~~~~~dff~d~~~~s~~nfL~~~L~  327 (388)
                      ++.+||+||||||+||+|||+|+.+ .   |.||.+||++|++||+++|+          || +|+  ++++|||+++|.
T Consensus       232 ~llgn~~s~eQWk~Ll~Llc~s~~~-~---~~l~~~~l~~L~~QL~~~P~----------df-~D~--~~~~~~l~~~L~  294 (363)
T 3sbt_B          232 MFFGNYGSSLQWHAMIELICSSATV-P---KHMLDKLDEILYYQIKTLPE----------QY-SDI--LLNERVWNICLY  294 (363)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHTCSCC-C---HHHHHHHHHHHHHHHHHSCG----------GG-HHH--HCCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHhcchhh-h---HHHHHHHHHHHHHHHHhCCH----------HH-hhh--hcchhHHHHHHH
Confidence            5444499999999999999999985 3   79999999999999999984          77 899  999999999999


Q ss_pred             HHH
Q 016504          328 DFF  330 (388)
Q Consensus       328 ~f~  330 (388)
                      +++
T Consensus       295 ~~~  297 (363)
T 3sbt_B          295 SSF  297 (363)
T ss_dssp             TST
T ss_pred             HHh
Confidence            985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00