Citrus Sinensis ID: 016712
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LUW5 | 616 | DEAD-box ATP-dependent RN | yes | no | 0.822 | 0.512 | 0.670 | 1e-121 | |
| Q9LUW6 | 610 | DEAD-box ATP-dependent RN | no | no | 0.838 | 0.527 | 0.634 | 1e-116 | |
| Q0D8N0 | 602 | DEAD-box ATP-dependent RN | yes | no | 0.752 | 0.480 | 0.612 | 1e-106 | |
| Q0ILZ4 | 628 | DEAD-box ATP-dependent RN | yes | no | 0.684 | 0.418 | 0.637 | 4e-97 | |
| Q8L7S8 | 748 | DEAD-box ATP-dependent RN | no | no | 0.682 | 0.350 | 0.567 | 4e-79 | |
| Q0DM51 | 758 | DEAD-box ATP-dependent RN | no | no | 0.593 | 0.300 | 0.614 | 7e-79 | |
| Q39189 | 671 | DEAD-box ATP-dependent RN | no | no | 0.601 | 0.344 | 0.445 | 3e-49 | |
| Q650T9 | 696 | DEAD-box ATP-dependent RN | no | no | 0.588 | 0.324 | 0.443 | 4e-48 | |
| Q9BQ39 | 737 | ATP-dependent RNA helicas | yes | no | 0.580 | 0.302 | 0.427 | 8e-48 | |
| Q99MJ9 | 734 | ATP-dependent RNA helicas | yes | no | 0.580 | 0.303 | 0.427 | 9e-48 |
| >sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 257/334 (76%), Gaps = 18/334 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAG--TREFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/342 (63%), Positives = 252/342 (73%), Gaps = 20/342 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKS-------GPVIPRHDDIIKSR 54
M S +L+RS TS+R L A++TS+ L +LA A + G + S
Sbjct: 1 MISTVLRRSI-LGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSSP 59
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSS------------KDEGLDIS 102
F R+FH S P +F+SSI +A + +Y++ +GL I+
Sbjct: 60 FGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAIA 119
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
KFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+YG+
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGI 239
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSMMF
Sbjct: 240 DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMF 299
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
SATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA 341
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/315 (61%), Positives = 236/315 (74%), Gaps = 26/315 (8%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ V DD GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGA--AVGGDD-----GLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIAT 325
DQKL +GISLYSIA+
Sbjct: 295 DQKLPEGISLYSIAS 309
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 220/279 (78%), Gaps = 16/279 (5%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 46 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 224
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 225 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 284
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
P WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+
Sbjct: 285 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIAS 323
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/266 (56%), Positives = 188/266 (70%), Gaps = 4/266 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMNMQKV 332
VGD D+KLA+GI LY+IAT+ ++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRT 339
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 294 bits (753), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 142/231 (61%), Positives = 182/231 (78%), Gaps = 3/231 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+DE L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFG
Sbjct: 101 EDE-LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFG 159
Query: 155 IPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYN 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++
Sbjct: 220 VQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQ 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I
Sbjct: 280 LPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAI 330
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 151/240 (62%), Gaps = 9/240 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W++ L+ ++LK+ TVDLVG D+KL S+ +A N
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVG--DEKLKASASVRHLALPCN 351
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
|
Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364
|
Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| 296086337 | 568 | unnamed protein product [Vitis vinifera] | 0.838 | 0.566 | 0.662 | 1e-122 | |
| 147770303 | 666 | hypothetical protein VITISV_028850 [Viti | 0.838 | 0.483 | 0.662 | 1e-121 | |
| 225446899 | 666 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.838 | 0.483 | 0.662 | 1e-121 | |
| 297830946 | 612 | hypothetical protein ARALYDRAFT_479746 [ | 0.830 | 0.521 | 0.682 | 1e-120 | |
| 22331253 | 616 | DEAD-box ATP-dependent RNA helicase 53 [ | 0.822 | 0.512 | 0.670 | 1e-119 | |
| 356554094 | 610 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.799 | 0.503 | 0.654 | 1e-116 | |
| 449463625 | 593 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.843 | 0.546 | 0.655 | 1e-115 | |
| 356499321 | 595 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.815 | 0.526 | 0.656 | 1e-115 | |
| 449505807 | 611 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.843 | 0.530 | 0.649 | 1e-115 | |
| 297830944 | 615 | hypothetical protein ARALYDRAFT_479744 [ | 0.830 | 0.518 | 0.633 | 1e-114 |
| >gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 272/347 (78%), Gaps = 25/347 (7%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ M
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEM 343
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 272/347 (78%), Gaps = 25/347 (7%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ M
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEM 343
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 272/347 (78%), Gaps = 25/347 (7%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ M
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEM 343
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp. lyrata] gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/328 (68%), Positives = 257/328 (78%), Gaps = 9/328 (2%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSG----PVIPRHDDIIKSRFSA 57
M + +L+RS SKR L+A+LTS+ +L HLA A + VI D +K F +
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINAVLFHHLAPAAARVSDLAVIGSSD--VKPGFLS 57
Query: 58 G--TREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALA 115
G REFH S PL+F++S+ + + S+ +GL IS+L IS +IV AL+
Sbjct: 58 GVKAREFHFESGPLEFRASMVSSAGFAISESSERRVGDSESDGLAISELGISPEIVKALS 117
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
+GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHGRGRNPL
Sbjct: 118 SKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPL 177
Query: 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTPGRVIDL
Sbjct: 178 CLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL 237
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295
+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP WIRSLT
Sbjct: 238 MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTK 297
Query: 296 KYLKNPLTVDLVGDSDQKLADGISLYSI 323
KYL NPLT+DLVGDSDQKLADGI+ YSI
Sbjct: 298 KYLNNPLTIDLVGDSDQKLADGITTYSI 325
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana] gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana] gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana] gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana] gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 257/334 (76%), Gaps = 18/334 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAG--TREFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/330 (65%), Positives = 256/330 (77%), Gaps = 23/330 (6%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + IL+R+ S L S+R AAL S T +H + + +R
Sbjct: 1 MLTAILRRTCSTL-SRRGFPAALISASTA-GNHFRPPSAAFI---------------SRT 43
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK----DEGLDISKLDISQDIVAALARR 117
FH+ + PL+F+SS + A+ AVDD+ Y++ SK DEGL+I+KL IS+DIV+ALA++
Sbjct: 44 FHSNTGPLNFRSS-SCHRAEYAVDDF-PYEEGSKGNAADEGLEIAKLGISEDIVSALAKK 101
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DKII+FN KHGRGR+PL L
Sbjct: 102 GITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLAL 161
Query: 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237
VLAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+
Sbjct: 162 VLAPTRELARQVETEFCESAPNLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLLN 221
Query: 238 RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297
R ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ Y
Sbjct: 222 RGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNY 281
Query: 298 LKNPLTVDLVGDSDQKLADGISLYSIATSM 327
L NPLT+DLVGDSDQKLADGISLYSIAT +
Sbjct: 282 LNNPLTIDLVGDSDQKLADGISLYSIATDL 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/334 (65%), Positives = 257/334 (76%), Gaps = 10/334 (2%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDII----KS 53
MMS+I+L+RSS+ S + + L + + L S + +H I KS
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKS 60
Query: 54 -RFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ + A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLVSK-AEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
L+ YL NPLT+DLVGDSDQKLADGISL+S+ +
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVS 333
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/329 (65%), Positives = 259/329 (78%), Gaps = 16/329 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + +L+R+SS L S+R AAL S T + A H ++ + + +R
Sbjct: 1 MLTAVLRRTSSTL-SRRGFPAALISASTATATATAG--------NHFRLLSA--AVNSRT 49
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRG 118
FH+ PL+F++S + A+ AVDD+ Y++ SK DEGL+I+KL ISQDIV+ALA++G
Sbjct: 50 FHSNPGPLNFRAS-SCHRAEYAVDDF-PYEEGSKGNADEGLEIAKLGISQDIVSALAKKG 107
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
I+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK+I+FN KHGRGR+PL LV
Sbjct: 108 ITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQFNAKHGRGRDPLALV 167
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
LAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+ R
Sbjct: 168 LAPTRELARQVESEFCESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNR 227
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ YL
Sbjct: 228 GALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYL 287
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSM 327
NPLT+DLVGDSDQKLADGISLYSIAT +
Sbjct: 288 NNPLTIDLVGDSDQKLADGISLYSIATDL 316
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/334 (64%), Positives = 254/334 (76%), Gaps = 10/334 (2%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDIIKSR--- 54
MMS+I+L+RSS+ S + + L + + L S + +H I
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKP 60
Query: 55 --FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLV-SKAEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
L+ YL NPLT+DLVGDSDQKLADGISL+S+ +
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVS 333
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp. lyrata] gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/349 (63%), Positives = 257/349 (73%), Gaps = 30/349 (8%)
Query: 2 MSSIILKRSSSFL-TSKRALTAALTSVETILHSHLAAAK----------SGPVIPRHDDI 50
M S +L RS FL TS+R L A++TS+ L +LA A +G + +
Sbjct: 1 MISTVLHRS--FLGTSRRTLAASVTSINAALFHNLAPAAAATATVSDLANGATNVKSLPL 58
Query: 51 IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEG------------ 98
+ F R+FH S P +F+SSI +A + +Y++S D G
Sbjct: 59 NSNPFGVKGRDFHVKSVPSEFRSSIVSPAGFAAQEYAPSYENS--DGGMGDSESVGSSSG 116
Query: 99 ---LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
L IS+L IS +IV AL RGI KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI
Sbjct: 117 GDGLAISELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 176
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
P++DKIIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QM
Sbjct: 177 PVIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQM 236
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L+YG+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP+
Sbjct: 237 RELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPE 296
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
RQSMMFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA
Sbjct: 297 KRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA 345
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| TAIR|locus:2087852 | 616 | PMH2 "putative mitochondrial R | 0.830 | 0.517 | 0.682 | 4.4e-107 | |
| TAIR|locus:2087832 | 610 | PMH1 "putative mitochondrial R | 0.708 | 0.445 | 0.714 | 1e-100 | |
| TAIR|locus:504955106 | 748 | emb1138 "embryo defective 1138 | 0.697 | 0.358 | 0.557 | 1.1e-71 | |
| TAIR|locus:2167903 | 671 | PRH75 [Arabidopsis thaliana (t | 0.648 | 0.371 | 0.426 | 3.3e-47 | |
| UNIPROTKB|E1BW15 | 693 | DDX50 "Uncharacterized protein | 0.588 | 0.326 | 0.437 | 3.1e-46 | |
| ZFIN|ZDB-GENE-031113-10 | 759 | ddx21 "DEAD (Asp-Glu-Ala-Asp) | 0.591 | 0.299 | 0.440 | 1.2e-45 | |
| UNIPROTKB|F1LX16 | 659 | F1LX16 "Uncharacterized protei | 0.648 | 0.377 | 0.405 | 3.4e-45 | |
| UNIPROTKB|E2RPT4 | 687 | DDX50 "Uncharacterized protein | 0.588 | 0.328 | 0.433 | 5.7e-45 | |
| UNIPROTKB|E2QTT0 | 738 | DDX50 "Uncharacterized protein | 0.588 | 0.306 | 0.433 | 1.2e-44 | |
| RGD|1307306 | 782 | Ddx21 "DEAD (Asp-Glu-Ala-Asp) | 0.648 | 0.318 | 0.405 | 1.4e-44 |
| TAIR|locus:2087852 PMH2 "putative mitochondrial RNA helicase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 226/331 (68%), Positives = 259/331 (78%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAK---SGPVIPRHDDIIKSRFSAG 58
M + +L+RS SKR L+A+LTS+ T+L +LA A S + D+ K+ F G
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLAPAATRVSDLALIGSSDV-KAGFPFG 58
Query: 59 T--REFHAISRPLDFKSSIAWQHAQSAVDDY----VAYDDSSKDEGLDISKLDISQDIVA 112
+ H S PLDF++S+ Q A A+ + V +S +GL IS+L IS +IV
Sbjct: 59 VEAKGIHFQSGPLDFRASMVSQ-AGFAISESSERRVGDSESVGGDGLAISELGISPEIVK 117
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHGRGR
Sbjct: 118 ALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGR 177
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
NPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTPGRV
Sbjct: 178 NPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRV 237
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP WIRS
Sbjct: 238 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRS 297
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
LT KYL NPLTVDLVGDSDQKLADGI+ YSI
Sbjct: 298 LTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328
|
|
| TAIR|locus:2087832 PMH1 "putative mitochondrial RNA helicase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 203/284 (71%), Positives = 228/284 (80%)
Query: 53 SRFSAGTREFHAISRPLDFKSSI-------AWQHAQS-----AVDDYVAYDDSSKDEGLD 100
S F R+FH S P +F+SSI A ++A S + D + S +GL
Sbjct: 58 SPFGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLA 117
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 118 IADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 177
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
IIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+Y
Sbjct: 178 IIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNY 237
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSM
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM 297
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
MFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA
Sbjct: 298 MFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA 341
|
|
| TAIR|locus:504955106 emb1138 "embryo defective 1138" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 155/278 (55%), Positives = 196/278 (70%)
Query: 64 AISRPLDFKSSIAWQH-AQSAVDDYVAYDDSSK---DEG--LDISKLDISQDIVAALARR 117
A++ P S A++ S D+Y D++ D+G L ISKL + Q + +L +R
Sbjct: 61 AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR 120
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRN 173
GI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+I
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRII 240
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DLI+ +L L EV+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L
Sbjct: 241 DLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKL 300
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
KYL NPL +DLVGD D+KLA+GI LY+IAT+ ++
Sbjct: 301 ARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKR 338
|
|
| TAIR|locus:2167903 PRH75 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 110/258 (42%), Positives = 159/258 (61%)
Query: 70 DFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAV 129
+ KS + + +S+ + +D D +SK IS + L GI LFPIQ +
Sbjct: 67 EVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQAST 126
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTREL 185
+ + G D++GRARTG GKTLAF +PIL+ ++ K K G GR+P LVL PTREL
Sbjct: 127 FDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTREL 186
Query: 186 AKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL 243
AKQV +F SL + C+YGG Q L GVD VVGTPGR+ D I+R L+
Sbjct: 187 AKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDF 246
Query: 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-N 300
S +QF VLDEAD+ML +GF EDVE+IL ++ + Q+++FSAT+P W+++++N++LK +
Sbjct: 247 SYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRD 306
Query: 301 PLTVDLVGDSDQKLADGI 318
T+DLVG+ K ++ +
Sbjct: 307 QKTIDLVGNDKMKASNSV 324
|
|
| UNIPROTKB|E1BW15 DDX50 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 3.1e-46, P = 3.1e-46
Identities = 102/233 (43%), Positives = 145/233 (62%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS+ + L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP
Sbjct: 112 EGA-FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIP 170
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++K+ +++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+
Sbjct: 171 LIEKLQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQID 230
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
+ G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 231 LIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKK 290
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I
Sbjct: 291 DSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAI 343
|
|
| ZFIN|ZDB-GENE-031113-10 ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 1.2e-45, P = 1.2e-45
Identities = 103/234 (44%), Positives = 145/234 (61%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS + + L RG+S LF IQ G+D+IG+ARTGTGKT +F +P
Sbjct: 165 EGA-FSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVP 223
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++K+ +++ RGR P LVLAPTRELA QV K+F + L C YGG+ + Q+
Sbjct: 224 LVEKLQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRKLSVTCFYGGSSYNPQID 283
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER---- 272
A+ G+D +VGTPGR+ D ++ N L+LS++Q VVLDE DQML +GFAE VE IL
Sbjct: 284 AIRSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKK 343
Query: 273 -LPQNRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIA 324
Q Q+++FSAT P W+ + KY+++ + VDL+G QK A + +IA
Sbjct: 344 DAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIA 397
|
|
| UNIPROTKB|F1LX16 F1LX16 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 105/259 (40%), Positives = 151/259 (58%)
Query: 63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
+ +S P SS +S + + + EG S IS++ V L RG++ L
Sbjct: 34 NGLSHPKPDSSSTQAPGEESETEKEIPVEQK---EGA-FSNFPISEETVKLLKARGVNFL 89
Query: 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
FPIQ G+D+I +ARTGTGKT +F IP+++K+ ++ RGR P LVLAPT
Sbjct: 90 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPT 149
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELA QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+
Sbjct: 150 RELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD 209
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
L++++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY
Sbjct: 210 LTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKY 269
Query: 298 LKNPLT-VDLVGDSDQKLA 315
+K+ VDL+G QK A
Sbjct: 270 MKSTYKQVDLIGKKTQKAA 288
|
|
| UNIPROTKB|E2RPT4 DDX50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 5.7e-45, P = 5.7e-45
Identities = 101/233 (43%), Positives = 142/233 (60%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 138 EGA-FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 196
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 197 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 256
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 257 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 316
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 317 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 369
|
|
| UNIPROTKB|E2QTT0 DDX50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 101/233 (43%), Positives = 142/233 (60%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EG S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP
Sbjct: 137 EGA-FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 195
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+
Sbjct: 196 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 255
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 315
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 368
|
|
| RGD|1307306 Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 1.4e-44, P = 1.4e-44
Identities = 105/259 (40%), Positives = 151/259 (58%)
Query: 63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
+ +S P SS +S + + + EG S IS++ V L RG++ L
Sbjct: 150 NGLSHPKPDSSSTQAPGEESETEKEIPVEQK---EGA-FSNFPISEETVKLLKARGVNFL 205
Query: 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
FPIQ G+D+I +ARTGTGKT +F IP+++K+ ++ RGR P LVLAPT
Sbjct: 206 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPT 265
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELA QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+
Sbjct: 266 RELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD 325
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
L++++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY
Sbjct: 326 LTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKY 385
Query: 298 LKNPLT-VDLVGDSDQKLA 315
+K+ VDL+G QK A
Sbjct: 386 MKSTYEQVDLIGKKTQKAA 404
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.824 |
| 3rd Layer | 3.6.4 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 384 | |||
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-81 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-77 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 1e-55 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-54 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 8e-54 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 8e-50 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 8e-50 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 6e-45 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 2e-43 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 7e-41 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-40 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 8e-39 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-37 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 5e-37 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 4e-35 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 2e-12 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 6e-08 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-06 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-06 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 3e-06 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 8e-06 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 0.002 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 0.004 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 3e-81
Identities = 88/203 (43%), Positives = 134/203 (66%), Gaps = 6/203 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S +++ + G K PIQ + P + GRD+IG+A+TG+GKT AF IPIL+K+
Sbjct: 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDP 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+ P L+LAPTRELA Q+ + + +L + +YGGT I Q+R L G
Sbjct: 64 ----SPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRG 119
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VV TPGR++DL++R L+LS+V+++VLDEAD+ML +GF + + IL+ LP++RQ+++
Sbjct: 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLL 179
Query: 282 FSATMPPWIRSLTNKYLKNPLTV 304
FSATMP +R L K+L+NP+ +
Sbjct: 180 FSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 2e-77
Identities = 96/220 (43%), Positives = 140/220 (63%), Gaps = 7/220 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S +++ AL G + PIQ A + + GRD++G+A+TGTGKT AF +P+L KI
Sbjct: 32 ASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKI 91
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRAL 218
K + L+LAPTRELA Q+ +E ++ L VYGG I Q+ AL
Sbjct: 92 ----LKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL 147
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VV TPGR++DLIKR L+LS V+ +VLDEAD+ML +GF +D+E IL+ LP +RQ
Sbjct: 148 KRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQ 207
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+++FSATMP IR L +YL +P+ +++ + ++ I
Sbjct: 208 TLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKI 247
|
Length = 513 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 1e-55
Identities = 78/208 (37%), Positives = 128/208 (61%), Gaps = 13/208 (6%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L + ++A L G +++ PIQ L + G+D+I +A+TG+GKT AFG+ +L K+
Sbjct: 7 STLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKL 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-----TICVYGGTPISHQMR 216
+ K R LVL PTRELA QV KE A + T+C GG P+ Q+
Sbjct: 67 ---DVKRFR---VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLC--GGVPMGPQID 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L++G +VGTPGR++D +++ L+L + +VLDEAD+ML +GF + ++ I+ + P
Sbjct: 119 SLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPAR 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+++FSAT P I +++ ++ ++P+ V
Sbjct: 179 RQTLLFSATYPEGIAAISQRFQRDPVEV 206
|
Length = 460 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 1e-54
Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 10/174 (5%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQ + + G+D++ +A TG+GKTLAF +PIL ++ + P LVLAPTR
Sbjct: 2 PIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLP------KKGGPQALVLAPTR 55
Query: 184 ELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNA 240
ELA+Q+ +E + L + GGT + Q R L G D +VGTPGR++DL++R
Sbjct: 56 ELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGK 115
Query: 241 LNLS-EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
L L ++ +VLDEA ++L +GF +D+E IL RLP +RQ ++ SAT+P + L
Sbjct: 116 LKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 8e-54
Identities = 86/207 (41%), Positives = 135/207 (65%), Gaps = 4/207 (1%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S DI+ A+A +G + PIQ+ + ++GRD++ A+TGTGKT F +P+L +I
Sbjct: 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 65
Query: 164 FNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDY 220
+ H +GR P+ L+L PTRELA Q+ + + + L+ ++ V+GG I+ QM L
Sbjct: 66 -RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD +V TPGR++DL +NA+ L +V+ +VLDEAD+ML +GF D+ +L +LP RQ++
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNL 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLV 307
+FSAT I++L K L NPL +++
Sbjct: 185 LFSATFSDDIKALAEKLLHNPLEIEVA 211
|
Length = 456 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 8e-50
Identities = 78/196 (39%), Positives = 117/196 (59%), Gaps = 11/196 (5%)
Query: 114 LARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
+ + G L P QK +E + G RD+I A TG+GKTLA +P L+ + RG+
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK-------RGK 53
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGV-DAVVGTP 229
LVL PTRELA+Q +E + PSL + +YGG Q+R L+ G D +V TP
Sbjct: 54 GGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTP 113
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR++DL++ + L+LS V V+LDEA ++L GF + +E +L+ LP+N Q ++ SAT P
Sbjct: 114 GRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173
Query: 290 IRSLTNKYLKNPLTVD 305
I +L +L +P+ +D
Sbjct: 174 IENLLELFLNDPVFID 189
|
Length = 201 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 8e-50
Identities = 87/204 (42%), Positives = 126/204 (61%), Gaps = 9/204 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L +
Sbjct: 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNL-- 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDY 220
+ P LVLAPTRELA QV + +F + ++ + +YGG Q+RAL
Sbjct: 69 ----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+ Q+
Sbjct: 125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+FSATMP IR +T +++K P V
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEV 208
|
Length = 629 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 6e-45
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 9/217 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH- 168
I+ +L G ++ PIQ A+ GRDMIG A TG+GKTLAF +L I+ N +
Sbjct: 141 ILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAF---LLPAIVHINAQPL 197
Query: 169 -GRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAV 225
G P+ LVLAPTRELA+Q+ ++ ++ S + YGG P Q+ AL GV+ +
Sbjct: 198 LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEIL 257
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
+ PGR+ID ++ N NL V ++VLDEAD+ML +GF + I+ ++ +RQ++M+SAT
Sbjct: 258 IACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSAT 317
Query: 286 MPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLY 321
P ++SL K P+ V+ VG D I
Sbjct: 318 WPKEVQSLARDLCKEEPVHVN-VGSLDLTACHNIKQE 353
|
Length = 545 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-43
Identities = 78/205 (38%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + +V AL ++G PIQ L + GRD+ G+A+TGTGKT+AF +
Sbjct: 11 SDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYL 70
Query: 162 IKFNEKHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
+ R N P L++APTRELA Q+ + A + L YGG Q++ L
Sbjct: 71 LSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 130
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QN 276
+ GVD ++GT GR+ID K+N +NL +Q VVLDEAD+M +GF +D+ + R+P
Sbjct: 131 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQ 190
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP 301
R +M+FSAT+ +R L +++ NP
Sbjct: 191 RLNMLFSATLSYRVRELAFEHMNNP 215
|
Length = 423 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 7e-41
Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ DE +D L +++D++ + G K IQ+ ++P + G D IG+A++GTGKT
Sbjct: 20 ESNYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKT 79
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I L I L+LAPTRELA+Q++K L C GG
Sbjct: 80 ATFVIAALQLI------DYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGG 133
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + + L GV VVGTPGRV D+I + L + +++ +LDEAD+MLS GF +
Sbjct: 134 TVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYD 193
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+ ++LP + Q +FSATMP I LT K++++P + LV D+ +GI + +A
Sbjct: 194 VFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRI-LV-KKDELTLEGIRQFYVA 247
|
Length = 401 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-40
Identities = 74/208 (35%), Positives = 116/208 (55%), Gaps = 7/208 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L++ + ++ AL +G ++ IQ + PA+ GRD++G A TGTGKT AF +P L +
Sbjct: 4 SELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHL 63
Query: 162 IKFNEKH-GRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
+ F + G R L+L PTRELA QV + E A LD + GG +
Sbjct: 64 LDFPRRKSGPPR---ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
D VV TPGR++ IK + V+ ++LDEAD+ML +GFA+D+E I +Q
Sbjct: 121 SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQ 180
Query: 279 SMMFSATMP-PWIRSLTNKYLKNPLTVD 305
+++FSAT+ ++ + L +P+ V+
Sbjct: 181 TLLFSATLEGDAVQDFAERLLNDPVEVE 208
|
Length = 434 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 8e-39
Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPLCLVLAPT 182
PIQ + A+ GR ++ A TG+GKT +F +PI+ + H RNPL +VL PT
Sbjct: 146 PIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPT 205
Query: 183 RELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
REL QVE + L T V GG + Q+ + GV+ +VGTPGR+IDL+ ++
Sbjct: 206 RELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD 265
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
+ L V +VLDE D ML GF + V I + L Q Q ++FSAT+ P + + K+
Sbjct: 266 IELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQP-QVLLFSATVSPEVEKFASSLAKD 324
Query: 301 PLTV 304
+ +
Sbjct: 325 IILI 328
|
Length = 518 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-37
Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 8/151 (5%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
RD++ A TG+GKTLA +PIL+ + + LVLAPTRELA QV + E
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKEL 53
Query: 197 AP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255
+ + GGT I Q + L D VVGTPGR++D ++R L+L ++ ++LDEA
Sbjct: 54 FGEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAH 113
Query: 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
++L+ GF IL +LP++RQ ++ SAT
Sbjct: 114 RLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 5e-37
Identities = 76/209 (36%), Positives = 121/209 (57%), Gaps = 6/209 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L S D+ ++A L G ++ PIQ L A+ G D+ G+A+TGTGKTLAF + ++
Sbjct: 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVM 68
Query: 159 DKIIKFNEKHGRG-RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQM 215
++++ R +P L+LAPTRELA Q+ K+ + L VYGG Q
Sbjct: 69 NRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQR 128
Query: 216 RALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD ++ TPGR+ID +K++ ++L + VLDEAD+M +GF +D+ +L R+P
Sbjct: 129 ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP 188
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNP 301
+ RQ+++FSAT+ + L +++ P
Sbjct: 189 ERGTRQTLLFSATLSHRVLELAYEHMNEP 217
|
Length = 572 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 4e-35
Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 10/231 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++ +++ A+ G PIQ VL + G D IGRA+TGTGKT AF I I++++++
Sbjct: 92 FNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQ 151
Query: 164 FNEKHGRGR-NPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
R P L++APTREL Q+ K+ L+ + GG Q++ L+
Sbjct: 152 TPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEA 211
Query: 221 G-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNR 277
D +V TPGR++D +R ++L V+ +VLDEAD+ML +GF V I+ + P + R
Sbjct: 212 RFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEER 271
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSIATS 326
Q+++FSAT + +L ++ +P V++ + + +D + +Y++A S
Sbjct: 272 QTLLFSATFTDDVMNLAKQWTTDPAIVEI--EPENVASDTVEQHVYAVAGS 320
|
Length = 475 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+ +AL + GI +L+ Q L +GR+++ TG+GKT +F +PILD ++
Sbjct: 58 SLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL------ 111
Query: 169 GRGRNPLCLVLAPTRELAK-QVEK--EFHESAPSLDTICVYGG-TPISHQMRALDYGVDA 224
R + L+L PT LA Q E+ E P T Y G TP + + D
Sbjct: 112 -RDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDI 170
Query: 225 VVGTPGRVIDLIKRNALN----LSEVQFVVLDEADQMLSVGFAEDVEVILERL------- 273
++ P + L+ RN L ++++V+DE V +V ++L RL
Sbjct: 171 LLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEVALLLRRLLRRLRRY 229
Query: 274 PQNRQSMMFSAT 285
Q + SAT
Sbjct: 230 GSPLQIICTSAT 241
|
Length = 851 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 109 DIVAALAR-RGISKLF-PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
D V + + GI +LF P Q+AV + + +++ A TG+GKTL + IL +++
Sbjct: 18 DRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGG 77
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQMRALDYGVDAV 225
K + + P + LA++ +EF + + G + + R Y V +
Sbjct: 78 K--------VVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-RLARYDV--I 126
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF--- 282
V TP ++ L ++ + EV VV+DE + +E I+ R+ + + +
Sbjct: 127 VTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGL 186
Query: 283 SATMP------PWIRS 292
SAT+P W+ +
Sbjct: 187 SATLPNAEEVADWLNA 202
|
Length = 766 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 23/171 (13%)
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
+R + L P Q+ + G +++ A TG+GKT A +P++++++ +
Sbjct: 17 KRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDG-IY 75
Query: 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRALDYGVDAVVGTPGRV 232
L ++P + L + + E L I V G TP S + + L ++ TP +
Sbjct: 76 ALYISPLKALNNDIRRRLEEPLRELG-IEVAVRHGDTPQSEKQKMLKNPPHILITTPESL 134
Query: 233 -IDLIKRNAL-NLSEVQFVVLDEADQM--------LSVGFAEDVEVILERL 273
I L L +V++V++DE + L++ LERL
Sbjct: 135 AILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALS--------LERL 177
|
Length = 814 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPAMQGRDMIGRARTGTGKTL 151
+ + E + + +LDI + L R GI +L P+Q AV ++G +++ + T +GKTL
Sbjct: 188 TDEVERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTL 247
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGT 209
+ + +++ +K L L P LA Q ++F E S L G +
Sbjct: 248 IGELAGIPRLLSGGKKM--------LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMS 299
Query: 210 PISHQMRAL--DYGVDA--VVGT-PGRVIDLIKRNALNLSEVQFVVLDE 253
I + + D DA +VGT G ID + R +L ++ VV+DE
Sbjct: 300 RIKTREEPVVVDTSPDADIIVGTYEG--IDYLLRTGKDLGDIGTVVIDE 346
|
Length = 830 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 27/197 (13%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPI 157
+ + +L + + I L RGI +L+P Q L+ ++G++++ T +GKTL I +
Sbjct: 1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVM 60
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
++K+++ K + L P + LA++ +EF + + + M
Sbjct: 61 VNKLLREGGK--------AVYLVPLKALAEEKYREFKD----------WEKLGLRVAMTT 102
Query: 218 LDY--------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
DY D ++ T + L++ + + +V+ VV DE + S +E+I
Sbjct: 103 GDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMI 162
Query: 270 LERLPQNRQSMMFSATM 286
L + Q + SAT+
Sbjct: 163 LTHMLGRAQILGLSATV 179
|
Length = 720 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
D+VAAL GI + + Q E A GR ++ T +GK+LA+ +P+L +
Sbjct: 24 DVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA------ 77
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQMRALDYGVDAVVG 227
L LAPT+ LA + E Y G TP + A ++ V+
Sbjct: 78 -DDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHA-RYVLT 135
Query: 228 TPGRVIDLIKRNALN--------LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
P D++ R L L +++VV+DE V F V ++L RL R
Sbjct: 136 NP----DMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-FGSHVALVLRRL--RRLC 188
Query: 280 MMFSAT 285
+ A+
Sbjct: 189 ARYGAS 194
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174
A RG P Q + A++GR + A TG+GKTLA +P L + + +
Sbjct: 8 AARGW-TPRPFQLEMWAAALEGRSGLLIAPTGSGKTLAGFLPSLIDL----AGPEKPKKG 62
Query: 175 L-CLVLAPTRELAKQVEK 191
L L + P R LA + +
Sbjct: 63 LHTLYITPLRALAVDIAR 80
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+ I++L + + ++ GI +L+P Q +AV + G++++ T +GKTL + +
Sbjct: 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAM 60
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
L I + G+ L + P R LA + +EF + + G S
Sbjct: 61 LKAI----ARGGK-----ALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDEWL 111
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
D D +V T +V L++ A L ++ VV+DE
Sbjct: 112 GDN--DIIVATSEKVDSLLRNGAPWLDDITCVVVDE 145
|
Length = 737 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.98 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.98 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.97 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.97 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.97 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.97 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.96 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.96 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.96 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.96 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.96 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.96 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.95 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.95 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.95 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.93 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.92 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.92 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.92 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.91 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.91 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.9 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.9 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.9 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.89 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.89 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.89 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.89 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.88 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.87 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.84 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.83 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.83 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.82 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.81 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.81 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.81 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.8 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.8 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.8 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.8 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.8 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.77 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.76 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.75 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.72 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.69 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.69 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.68 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.67 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.66 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.64 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.61 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.57 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.57 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.54 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.53 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.47 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.45 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.42 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.36 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.35 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.34 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.34 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.33 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.32 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.27 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.27 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 99.21 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 99.21 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.17 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.16 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.16 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.15 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.11 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.1 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.09 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.0 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.99 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.94 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.88 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.87 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.86 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.85 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.81 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.74 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 98.73 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.71 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.67 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.67 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 98.67 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.66 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.65 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.65 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.64 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.58 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.56 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.55 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.53 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.5 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.43 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.42 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.4 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 98.36 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.27 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 98.26 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.23 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.22 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 98.2 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.2 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.19 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.19 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 98.19 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 98.19 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.16 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.03 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 98.01 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 98.01 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.97 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 97.95 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.95 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.95 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.93 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.93 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 97.85 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.81 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 97.79 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.76 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 97.75 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 97.75 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.74 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.72 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.66 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.63 | |
| PRK06526 | 254 | transposase; Provisional | 97.63 | |
| PRK08181 | 269 | transposase; Validated | 97.62 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.54 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.51 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.49 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.49 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.46 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 97.44 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 97.37 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.36 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 97.28 | |
| PRK08116 | 268 | hypothetical protein; Validated | 97.28 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.27 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 97.16 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 97.15 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.13 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.1 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.09 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 97.06 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 97.05 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 97.04 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 97.02 | |
| PRK08727 | 233 | hypothetical protein; Validated | 97.02 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 97.0 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.99 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.98 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.93 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 96.88 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 96.86 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 96.84 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 96.83 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.8 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 96.78 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 96.78 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.72 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 96.72 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 96.72 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 96.72 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 96.72 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 96.71 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.64 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 96.62 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 96.59 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 96.58 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 96.57 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.56 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 96.56 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 96.55 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.52 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 96.49 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 96.47 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 96.45 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.45 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 96.42 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 96.42 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 96.35 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 96.35 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 96.34 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.34 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 96.32 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.31 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.31 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 96.3 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 96.3 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.28 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 96.26 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 96.26 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 96.21 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 96.2 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 96.16 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.14 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 96.14 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 96.14 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 96.1 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 96.1 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 96.05 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 96.03 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 96.02 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 95.98 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 95.98 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 95.93 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 95.92 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 95.91 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 95.91 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 95.89 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 95.77 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 95.76 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.74 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 95.74 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 95.73 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 95.71 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 95.7 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 95.7 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 95.67 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 95.66 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 95.65 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 95.6 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 95.58 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 95.56 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 95.53 | |
| PHA00350 | 399 | putative assembly protein | 95.49 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 95.48 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 95.47 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 95.45 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 95.43 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 95.43 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 95.41 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 95.41 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 95.4 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 95.4 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.38 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 95.38 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 95.36 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 95.34 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 95.32 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 95.3 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 95.3 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 95.29 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 95.28 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 95.28 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 95.27 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 95.25 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 95.25 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 95.24 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 95.23 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 95.2 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 95.13 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 95.13 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 95.1 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 95.08 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 95.08 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 95.07 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 95.07 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 95.06 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 95.05 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 95.05 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 95.05 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 95.04 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 95.04 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 95.01 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 95.01 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.98 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 94.98 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 94.98 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 94.97 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 94.94 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 94.92 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 94.92 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 94.91 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 94.85 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 94.82 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 94.8 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 94.79 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 94.79 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 94.77 | |
| PF05729 | 166 | NACHT: NACHT domain | 94.74 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 94.71 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 94.69 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 94.69 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 94.67 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 94.66 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 94.65 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 94.63 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 94.6 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 94.59 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 94.58 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 94.55 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 94.5 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 94.5 | |
| PRK09087 | 226 | hypothetical protein; Validated | 94.44 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 94.4 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 94.39 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 94.37 | |
| PHA03372 | 668 | DNA packaging terminase subunit 1; Provisional | 94.37 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 94.33 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 94.31 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 94.3 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.27 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 94.27 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 94.23 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 94.22 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 94.2 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 94.15 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 94.12 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 94.1 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 94.0 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 94.0 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 93.98 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 93.97 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 93.9 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 93.88 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 93.86 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 93.82 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 93.8 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 93.79 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 93.77 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 93.73 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 93.72 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 93.72 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 93.69 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 93.62 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 93.6 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 93.56 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 93.56 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 93.52 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 93.52 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 93.46 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 93.44 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 93.42 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 93.4 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 93.39 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 93.37 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 93.35 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 93.33 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 93.31 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 93.24 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 93.23 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 93.06 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 93.05 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 92.88 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 92.87 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 92.82 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 92.79 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 92.74 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 92.73 | |
| PRK06321 | 472 | replicative DNA helicase; Provisional | 92.73 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 92.72 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 92.69 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 92.61 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 92.58 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 92.5 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 92.46 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 92.37 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 92.33 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 92.33 | |
| PHA00012 | 361 | I assembly protein | 92.31 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 92.3 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 92.29 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 92.22 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 92.19 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 92.15 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 92.09 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 92.08 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 92.06 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 92.06 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 92.05 | |
| PRK07773 | 886 | replicative DNA helicase; Validated | 91.99 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 91.98 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 91.95 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 91.94 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 91.92 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 91.91 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 91.91 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 91.9 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 91.89 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 91.83 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 91.78 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 91.77 | |
| TIGR03743 | 634 | SXT_TraD conjugative coupling factor TraD, SXT/TOL | 91.71 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 91.7 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General funct | 91.68 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 91.6 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 91.56 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 91.53 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 91.51 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 91.49 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 91.4 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 91.37 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 91.31 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 91.3 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 91.3 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 91.19 | |
| PRK13764 | 602 | ATPase; Provisional | 91.18 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 91.16 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 91.06 | |
| TIGR03754 | 643 | conj_TOL_TraD conjugative coupling factor TraD, TO | 91.05 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 91.02 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 91.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 90.97 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 90.91 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 90.9 | |
| COG4185 | 187 | Uncharacterized protein conserved in bacteria [Fun | 90.8 | |
| PRK07413 | 382 | hypothetical protein; Validated | 90.8 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 90.79 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 90.73 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 90.73 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 90.7 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 90.53 | |
| PHA02542 | 473 | 41 41 helicase; Provisional | 90.52 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 90.51 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 90.34 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 90.23 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 90.18 | |
| PHA02535 | 581 | P terminase ATPase subunit; Provisional | 90.15 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 90.13 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 90.07 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 89.97 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 89.88 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 89.87 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 89.87 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 89.86 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 89.83 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 89.75 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 89.71 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 89.55 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 89.5 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 89.43 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 89.37 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 89.25 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 88.85 | |
| PRK13880 | 636 | conjugal transfer coupling protein TraG; Provision | 88.84 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 88.69 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 88.66 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 88.61 | |
| TIGR02767 | 623 | TraG-Ti Ti-type conjugative transfer system protie | 88.48 |
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=393.82 Aligned_cols=284 Identities=36% Similarity=0.551 Sum_probs=258.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
.|+.+++++++..+|...||..|||+|.++||.++.|+|++..+.||||||++|++|++.++..........++|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999875555556779999999
Q ss_pred ecCHHHHHHHHHHHHHhCCCCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 180 APTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
+||||||.|+.+.+.++...+. ..|++||.+...+.+.+.+|++|+|+|||+|.+++..+.+.++++.++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 9999999999999999987555 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHC-CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH
Q 016712 258 LSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (384)
+++||.++++.|+..+ ++..|++++|||||.+++.++..|+.+|..|.+....+.....++.+....+. ...|...+.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHH
Confidence 9999999999999999 56679999999999999999999999999999876656677888888888776 444433332
Q ss_pred -----------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 -----------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 -----------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++.++.+.++...+...++.+.++||+.++.||+.+|+.|++|++.|+
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vL 395 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVL 395 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceE
Confidence 233467778888888888999999999999999999999999998874
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=361.05 Aligned_cols=305 Identities=29% Similarity=0.432 Sum_probs=267.2
Q ss_pred ccccHHHHhhhhccccccccCC------CCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 016712 71 FKSSIAWQHAQSAVDDYVAYDD------SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~ 144 (384)
...+..|++.....+.+..-.+ ...+...+|.++++.+.+++++++.||..||++|+++||.++.|+|+|+.+.
T Consensus 27 ~las~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAe 106 (476)
T KOG0330|consen 27 SLASEGWKKNEESGDKFILSAANRNEEMQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAE 106 (476)
T ss_pred cccchhhhhhhhhccchhhhhhhhcchhhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEec
Confidence 3456788877666555543221 2244567899999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCC
Q 016712 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222 (384)
Q Consensus 145 TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 222 (384)
||||||.+|++|+++++... ...++++||+||||||.|+.+.|..++. ++.+.++.||.+...+...+.+.+
T Consensus 107 TGSGKT~afaLPIl~~LL~~------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkP 180 (476)
T KOG0330|consen 107 TGSGKTGAFALPILQRLLQE------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKP 180 (476)
T ss_pred cCCCchhhhHHHHHHHHHcC------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCC
Confidence 99999999999999999873 2358899999999999999999999976 566778999999999999999999
Q ss_pred CEEEECchhHHHHHH-ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCC
Q 016712 223 DAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301 (384)
Q Consensus 223 ~IlV~Tp~~l~~~l~-~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 301 (384)
||+|+|||+|.+++. .+.+.++.++++|+||||+++++.|...+..|++.+|..+|+++||||+|..+.++...-+.+|
T Consensus 181 hilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p 260 (476)
T KOG0330|consen 181 HILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNP 260 (476)
T ss_pred CEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCC
Confidence 999999999999998 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChh
Q 016712 302 LTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHK 367 (384)
Q Consensus 302 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~ 367 (384)
+.|.+. ..+..-+.+.++|..... .+|...+++.+. .....++..|+.+|+.+..+||+|+++
T Consensus 261 ~~v~~s--~ky~tv~~lkQ~ylfv~~-k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~ 337 (476)
T KOG0330|consen 261 VKVAVS--SKYQTVDHLKQTYLFVPG-KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQS 337 (476)
T ss_pred eEEecc--chhcchHHhhhheEeccc-cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHH
Confidence 999874 445677778888888864 455555555444 556688889999999999999999999
Q ss_pred hhhchhhhhhcCCcccC
Q 016712 368 ARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 368 eR~~il~~F~~~~~~V~ 384 (384)
.|...+++|++|..+|+
T Consensus 338 ~Rlg~l~~Fk~~~r~iL 354 (476)
T KOG0330|consen 338 KRLGALNKFKAGARSIL 354 (476)
T ss_pred HHHHHHHHHhccCCcEE
Confidence 99999999999998875
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=382.46 Aligned_cols=282 Identities=38% Similarity=0.582 Sum_probs=254.0
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.+++++.++||..|||+|..+||.++.|+|++++++||||||++|++|+++.+... .......+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~----~~~~~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS----VERKYVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc----cccCCCceEE
Confidence 679999999999999999999999999999999999999999999999999999999999997532 0111111999
Q ss_pred EecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
++||||||.|+++.+..+.. ++.+.+++||.+...+...+..++|||||||+++++++.++.+.+.++.++|+||||
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 99999999999999999875 567889999999999999999899999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
+|++.||..++..|+..++.+.|+++||||+|+.+..++..++.+|..|.+...........+.++++.+...+.|.+.+
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L 264 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988864444457888999999998655577766
Q ss_pred HHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+ ...++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vL 327 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVL 327 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 4433 377788999999999999999999999999999999999999875
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=331.01 Aligned_cols=281 Identities=29% Similarity=0.448 Sum_probs=256.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.....|+++|+.+++++++...||++|+.+|+.||+.+++|+|++.++..|+|||.+|-+.+++.+.- ..+..|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ 97 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQ 97 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceee
Confidence 34567999999999999999999999999999999999999999999999999999998888877632 134578
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++|||||+.|+.+.+..++.. +.+..+.||.+..+..+.+..|.+++.||||++.++++++.+..+.++++|+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 999999999999999999999864 455567899999999999999999999999999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|.|++.||..++..+++.+|+++|++++|||+|.++.++...|+.+|+.|-+. .++..++++++|++.++.++||++
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHh
Confidence 999999999999999999999999999999999999999999999999999774 556889999999999999999999
Q ss_pred HHH--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NAL--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+. ++.+..+.-+.+.++..++.|...||+|.++||+++|++|+.|+.+|+
T Consensus 256 tLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 256 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred HHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 773 345577778888888899999999999999999999999999998774
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=363.13 Aligned_cols=288 Identities=29% Similarity=0.409 Sum_probs=244.7
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.+.+...|+++++++.++++|.++||.+|||+|.++||.+++|+|+|+++|||||||++|++|++.++..... .....+
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~g 203 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDG 203 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCC
Confidence 4456678999999999999999999999999999999999999999999999999999999999988865321 112357
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
+++|||+||++||.|+.+.+++++. ++.+.+++|+.....+...+..+++|+|+||++|.+++..+...++++++|||
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 8999999999999999999999875 46678889999888888888899999999999999999988889999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcC-CCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
||||+|++++|..++..++..+++++|+++||||+|+.+..++..++. +++.+.+.. .+......+.+.+..... ..
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~-~~l~~~~~i~q~~~~~~~-~~ 361 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGS-LDLTACHNIKQEVFVVEE-HE 361 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECC-CccccCCCeeEEEEEEec-hh
Confidence 999999999999999999999999999999999999999999999886 577776532 222334556666555442 33
Q ss_pred hHHHHH----------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENAL----------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~----------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|...+. ++..+.++.++..|...++.+..+||+|++++|++++++|++|+++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~IL 431 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIM 431 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEE
Confidence 333222 223477778888888889999999999999999999999999998874
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=351.59 Aligned_cols=281 Identities=30% Similarity=0.421 Sum_probs=245.5
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.+|.++.|+-++++++..+||..|||+|..+||..+-|+|++.|+.||||||.+|.+|++.+++-...+ -...+|||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVLV 257 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVLV 257 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999864333 33568999
Q ss_pred EecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDEah 255 (384)
|+|||+|+.|++...+++.. ++.++.+.||.+...+...+..++||||+|||+|.+++.+. .+++.++..+|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999888753 67788899999999999999999999999999999999774 6789999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec-cchhhHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-MNMQKVEN 334 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~k~~~ 334 (384)
+|++.||..++.+|++.+++++|+++||||++..+..++..-++.|+.|-+.+.. .....+.+.++... ..+.-++.
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~--~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK--DTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc--ccchhhhHHHheeccccccccHH
Confidence 9999999999999999999999999999999999999999999999999875433 44555666655444 23333444
Q ss_pred HHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 335 ALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 335 l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+. +.+.++..+|--+|+.++-+||.|+++||-+.+++|+++++||+
T Consensus 416 ~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvL 480 (691)
T KOG0338|consen 416 MLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVL 480 (691)
T ss_pred HHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEE
Confidence 443332 56667777777889999999999999999999999999999985
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=355.29 Aligned_cols=276 Identities=30% Similarity=0.511 Sum_probs=243.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.+|+++++++.++++|.++||..|||+|.++|+.++.|+|+++++|||+|||++|++|+++.+... ..++++||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~li 77 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALV 77 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEE
Confidence 469999999999999999999999999999999999999999999999999999999999987431 23568999
Q ss_pred EecCHHHHHHHHHHHHHhC---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
++||++||.|+.+.++.+. .++.+..++||.+...+...+..+++|+|+||+++.+++.++.+.++++++|||||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999998865 3577888999999988888888899999999999999999988899999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
+|++++|...+..++..++...|+++||||+|+.+..+...++.+|..+.+.... ....+.++++..... .|.+.+
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~-~k~~~l 233 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPD-ERLPAL 233 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999988875432 234466666666533 354444
Q ss_pred HH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.. +..+.++.++..|...+..+..+||+|++++|++++++|++|+++|+
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vL 296 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVL 296 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 32 33477889999999999999999999999999999999999999874
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=349.40 Aligned_cols=285 Identities=31% Similarity=0.447 Sum_probs=242.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~~ 175 (384)
+...|+++++++.++++|.++||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 457899999999999999999999999999999999999999999999999999999999999987543211 1134689
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+|||+||++||.|+++.+..+.. ++.+..++||.....+...+..+++|+||||++|.+++..+.+.++++++|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999988764 5677888999888888888888899999999999999998889999999999999
Q ss_pred cccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh
Q 016712 254 ADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k 331 (384)
||++++++|..++..++..++. ..+.++||||++..+..+...++.+|..+.+.+.. .....+.+.+.... ...|
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~-~~~k 242 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPS-NEEK 242 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCC-HHHH
Confidence 9999999999999999999974 56789999999999999999999999888774332 33445555554443 3445
Q ss_pred HHHHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+... ..+.++.++..|...|+.+..+||+|++++|.+++++|++|+++|+
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vL 309 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDIL 309 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEE
Confidence 4444332 2366788888999999999999999999999999999999999875
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=352.16 Aligned_cols=282 Identities=32% Similarity=0.512 Sum_probs=240.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+|++++|++.++++|.++||..|||+|.++|+.++.|+|+++++|||+|||++|++|+++.+.............++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998653322122234689999
Q ss_pred ecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
+||++||.|+.+.++.+.. ++.+..++|+.....+...+..+++|+|+||++|++++....+.++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998765 45667788998888887778888999999999999999888889999999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH-
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL- 336 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~- 336 (384)
++++|...+..++..++...|+++||||+++.+..+...++.++..+.+... ......+.+++.... ...+.+.+.
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~-~~~k~~~l~~ 238 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR--NTASEQVTQHVHFVD-KKRKRELLSQ 238 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc--cccccceeEEEEEcC-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876432 233445666655443 233333322
Q ss_pred -------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 -------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 -------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+.++.++..|...++.+..+||+|++++|.+++++|++|+++|+
T Consensus 239 l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 299 (456)
T PRK10590 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 (456)
T ss_pred HHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 233466888999999999999999999999999999999999999875
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=349.02 Aligned_cols=287 Identities=28% Similarity=0.407 Sum_probs=239.7
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGR 172 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~ 172 (384)
.+.+..+|+++++++.++++|.+.||..|||+|.++||.++.|+|+++++|||||||++|++|++.++....... ....
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 346778999999999999999999999999999999999999999999999999999999999999886432211 1235
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
++++|||+||++||.|+++.++.+..+ +.+.+++||.....+...+..+++|+|+||++|.+++..+.+.++++++||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 789999999999999999999988754 456778898888888888888999999999999999998888999999999
Q ss_pred EeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 251 iDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
|||||+|+++||...+..++..++ +.|+++||||+++.+..++..++.++..+.+... ......+.+..+.+... .
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~--~~~~~~v~q~~~~~~~~-~ 351 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP--NRPNKAVKQLAIWVETK-Q 351 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC--CCCCcceeEEEEeccch-h
Confidence 999999999999999999999885 6899999999999999999999999988876432 23344556666555432 2
Q ss_pred hHHHHHHH----------------HhHhHHHHHHHHHh-hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENALFS----------------LKQNVMQTAWLMLW-LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~~~----------------~~~~~~~~~~~l~~-~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|...++.. ....++.++..+.. .++.+..+||+|+.++|++++++|++|+++|+
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~IL 422 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVI 422 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEE
Confidence 32222222 22455666666654 58999999999999999999999999999875
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=356.88 Aligned_cols=278 Identities=35% Similarity=0.525 Sum_probs=242.6
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|++++|++.++++|.++||.+|||+|.++|+.++.|+|+|++||||+|||++|++|+++.+.. ...++++|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~------~~~~~~~L 78 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP------ELKAPQIL 78 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh------ccCCCeEE
Confidence 346999999999999999999999999999999999999999999999999999999999988743 12467899
Q ss_pred EEecCHHHHHHHHHHHHHhC---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||+||++||.|+++.+..+. +++.+..++|+.....+...+..+++|+|+||+++.+++.++.+.++++++||||||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEA 158 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccH
Confidence 99999999999999888764 467888899999888888888889999999999999999998889999999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHH
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 334 (384)
|+|++++|...+..++..++...|+++||||+|+.+..+...|+.+|..|.+... ......+.+.++... ...|.+.
T Consensus 159 d~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~--~~~~~~i~q~~~~v~-~~~k~~~ 235 (629)
T PRK11634 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS--VTTRPDISQSYWTVW-GMRKNEA 235 (629)
T ss_pred HHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc--cccCCceEEEEEEec-hhhHHHH
Confidence 9999999999999999999999999999999999999999999999998876432 233445666665554 2334333
Q ss_pred HH--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 335 AL--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 335 l~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+. ++....+..++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 236 L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~IL 299 (629)
T PRK11634 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 (629)
T ss_pred HHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 32 334477888999999999999999999999999999999999999875
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=331.65 Aligned_cols=334 Identities=29% Similarity=0.411 Sum_probs=275.4
Q ss_pred ccccccCCCCcccccccCCCcCccc---cHHHHhhhhc--cccccccCC-CCCCCCCCccC-CCCCHHHHHHHHHcCCCC
Q 016712 49 DIIKSRFSAGTREFHAISRPLDFKS---SIAWQHAQSA--VDDYVAYDD-SSKDEGLDISK-LDISQDIVAALARRGISK 121 (384)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~-~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~ 121 (384)
.+.+.+++|+.+-++-++....-++ -..|+..... .++...-.. ..+.+..+|++ +.-.+++++++.+.||.+
T Consensus 163 ~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqK 242 (629)
T KOG0336|consen 163 KFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQK 242 (629)
T ss_pred hcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCC
Confidence 3447788999999887765444333 3456654322 222222111 23455667765 567899999999999999
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh-CCCC
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSL 200 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~-~~~~ 200 (384)
|||+|.++||.+++|.|++.++.||+|||++|++|.+.++...........++.+|+++||++|+.|+.-+..++ +.++
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ 322 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGL 322 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCc
Confidence 999999999999999999999999999999999999998877665556677899999999999999998877665 5688
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEE
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l 280 (384)
+.+|++|+.+..++.+.+..+.+|+|+||++|.++...+.+++..+.++|+||||+|+++||.+++.+|+--+++++|++
T Consensus 323 ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtv 402 (629)
T KOG0336|consen 323 KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTV 402 (629)
T ss_pred ceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHh---------------HhHHH
Q 016712 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLK---------------QNVMQ 345 (384)
Q Consensus 281 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~---------------~~~~~ 345 (384)
+.|||||+.++.++..|+++|..+.+ +..+...-..+++.++. ....+|.+.+-.... -.+..
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v-~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIV-TTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEe-cccHHHHHHHHHHHHhcCCCceEEEEEechhhhhh
Confidence 99999999999999999999998854 45555556667777744 446677765433222 23345
Q ss_pred HHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 346 TAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 346 ~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...|.-.|+.+..+||+-++.+|++.+++|+.|++.|+
T Consensus 481 LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrIL 519 (629)
T KOG0336|consen 481 LSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRIL 519 (629)
T ss_pred ccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEE
Confidence 566677779999999999999999999999999999875
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=352.23 Aligned_cols=283 Identities=30% Similarity=0.461 Sum_probs=239.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~~~l 177 (384)
.+|++++|++.++++|.++||..|||+|.++||.+++|+|+++++|||||||++|++|+++.+....... ....++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999886532111 112357999
Q ss_pred EEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDEa 254 (384)
||+||++|+.|+++.+..++. ++.+..++|+.....+...+..+++|+|+||++|++++.++ .+.+.++++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999999999999875 45677899999888888888888999999999999998765 467889999999999
Q ss_pred ccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhH
Q 016712 255 DQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (384)
|+|++++|...+..++..++. ..|+++||||++..+..+...++.++..+.+... ......+.++++... ...|.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~--~~~~~~i~q~~~~~~-~~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE--TITAARVRQRIYFPA-DEEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc--cccccceeEEEEecC-HHHHH
Confidence 999999999999999999986 7899999999999999999999999877765322 233445556555443 34444
Q ss_pred HHHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 333 ENALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 333 ~~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..++. +..+.++.++..|...++.+..+||+|++++|++++++|++|+++|+
T Consensus 246 ~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VL 311 (572)
T PRK04537 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (572)
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 44432 23467888999999999999999999999999999999999999875
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=341.54 Aligned_cols=281 Identities=29% Similarity=0.457 Sum_probs=243.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+|+++++++.+++.|.++||.+|+++|.++|+.+++|+|+++++|||+|||++|++|+++.+...... ...++++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998753221 2235789999
Q ss_pred ecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
+||++|+.|+++.+..+.. ++.+..++|+.....+...+..+++|+|+||++|++++..+.+.+.++++|||||||+|
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999998764 56778889999888887778888999999999999999988888999999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCCh-hHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (384)
++++|...+..+...++...|+++||||++. .+..+...++.++..+...+. ......+.+++........+.+.+.
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999989999999999985 478888888899998877533 2345567777776655555655553
Q ss_pred HH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 FS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 ~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.. ..+.++.++..|...++.+..+||+|++++|.+++++|++|+++|+
T Consensus 238 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vL 299 (434)
T PRK11192 238 HLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVL 299 (434)
T ss_pred HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEE
Confidence 33 2367889999999999999999999999999999999999999875
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=331.98 Aligned_cols=288 Identities=30% Similarity=0.420 Sum_probs=264.1
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.+.+...|+.++++..|+.+..+.-|.+|||+|.+++|..+.|+|++..+.||||||-+|++|++.++++..+-. .+.+
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-~g~g 296 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-PGEG 296 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc-CCCC
Confidence 455678899999999999999999999999999999999999999999999999999999999999997654432 3579
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
|..||++||++||.|++.+++++++ +++++++|||.+..++...+..++.||||||++|++++..+..++.++.++||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 9999999999999999999999876 67899999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k 331 (384)
||+++|++.||..+++.|...+++++|+|+||||++..+..+++.+|.+|+.+... +-......+.|.+..+...+.|
T Consensus 377 DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg--~vgean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 377 DEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG--EVGEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred echhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe--ehhccccchhheeeeccCcHHH
Confidence 99999999999999999999999999999999999999999999999999988653 2235567788888899999999
Q ss_pred HHHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+++..+. ...++++..|...++.|..+||+|.+.+|.+++.+|+.++.+|+
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vl 522 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVL 522 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceE
Confidence 999987766 55668888888899999999999999999999999999988774
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=336.72 Aligned_cols=287 Identities=26% Similarity=0.415 Sum_probs=251.7
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccC
Q 016712 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (384)
Q Consensus 90 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~ 169 (384)
|+.........|++|+|+....++|.+.+|..+|.+|+.+||..+.|+|+|..+.||||||++|++|+++++... +..
T Consensus 60 y~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--kWs 137 (758)
T KOG0343|consen 60 YAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--KWS 137 (758)
T ss_pred HHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc--CCC
Confidence 555555667789999999999999999999999999999999999999999999999999999999999999654 334
Q ss_pred CCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCc
Q 016712 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEV 246 (384)
Q Consensus 170 ~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l 246 (384)
...|.-+|||+|||+||.|+++.+.+.+. .+..+.+.||.....+...+.+ ++|+|||||+|+.++..+ .+...++
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcc
Confidence 45677899999999999999999999875 5677889999987777666554 899999999999999775 5678899
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
.++|+||||+|+++||...+..|+..+|+.+|+++||||.+..+..+++..+.+|.+|.+..........++.|+|+.++
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999864444677888999999886
Q ss_pred cchhhHHHHHHHHh--------------HhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCC
Q 016712 327 MNMQKVENALFSLK--------------QNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 327 ~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.++|.+.+...+. ..+.-++..|+++ |+++..+||.|++..|-++..+|-...
T Consensus 297 -l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 297 -LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred -hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 5788887765555 4555667777765 899999999999999999999997643
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=323.63 Aligned_cols=285 Identities=26% Similarity=0.374 Sum_probs=250.7
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|++++|++.+++++.+.||.+||-+|+.+||.+++|+|++..|.||||||.+|++|+++.+...........++.++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 36899999999999999999999999999999999999999999999999999999999999999877665666799999
Q ss_pred EEecCHHHHHHHHHHHHHhCC----CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC-CCCCCccEEEEe
Q 016712 178 VLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLD 252 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~-~~~~~l~~vViD 252 (384)
||+||+|||+|+++.+.++.. .+++.-+.+..+.......+...++|+|+||++++.++..+. ..+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999888642 455555555555555556777789999999999999998877 678899999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhH
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (384)
|||.++..||..++..+...+|+..|.++||||+..++..+.+.++++|+++.+. +.+.+..+.+.||++.+. +++|.
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~-e~el~~~dqL~Qy~v~cs-e~DKf 255 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLT-EGELPNPDQLTQYQVKCS-EEDKF 255 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEec-cccCCCcccceEEEEEec-cchhH
Confidence 9999999999999999999999999999999999999999999999999999885 334456788999999997 67777
Q ss_pred HHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 333 ENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 333 ~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..++..+. +.+-++...|...|++.+++.|.|+..-|-.+++.|..|=+|++
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Ydiv 322 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIV 322 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEE
Confidence 65544322 55667777788889999999999999999999999999998874
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=364.21 Aligned_cols=318 Identities=15% Similarity=0.141 Sum_probs=277.1
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
..|++++|-+ ++.++||.++ +.++++++++.+|++++.++.+.+. |+.+...++..|.. +..++.
T Consensus 509 ~~dkLyVPVeql~lisrY~g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~---d~~~q~ 585 (1139)
T COG1197 509 GEDKLYVPVEQLHLISRYVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPP---DTEWQE 585 (1139)
T ss_pred CCCeEEEEHHHhhHHhhccCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---ChHHHH
Confidence 3578999999 9999999765 5689999999999999888877665 77788889988877 899999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+.+.+....|+.|..||..++++ ||.++||+.|.|||.+++.+++.++. .|+||.|+|||+-||
T Consensus 586 ~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---------~GKQVAvLVPTTlLA 656 (1139)
T COG1197 586 EFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---------DGKQVAVLVPTTLLA 656 (1139)
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---------CCCeEEEEcccHHhH
Confidence 999987778999999999999876 69999999999999999999999984 589999999999999
Q ss_pred HHHHHHHHHhCCCCceEE--EECCCChHH---HHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 187 KQVEKEFHESAPSLDTIC--VYGGTPISH---QMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 187 ~q~~~~~~~~~~~~~~~~--~~g~~~~~~---~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
+|++++|++.+.++++.+ +..-.+.++ ....+++| .|||||| |.+.+..+.|++++++||||.|+
T Consensus 657 ~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqR---- 727 (1139)
T COG1197 657 QQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQR---- 727 (1139)
T ss_pred HHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhh----
Confidence 999999999999887655 333334443 34445555 8999999 88888999999999999999999
Q ss_pred ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH-----
Q 016712 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA----- 335 (384)
Q Consensus 261 ~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l----- 335 (384)
||...++-++.++.++.++.|||||.|++.+|...++++...|.++|..+.++.+.+..+......+...++..
T Consensus 728 -FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQv 806 (1139)
T COG1197 728 -FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQV 806 (1139)
T ss_pred -cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999988888777766655554444444433
Q ss_pred --HHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 --LFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 --~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.+++.+..++.+ +.++++.||+|++.+.+++|.+|++|++||+
T Consensus 807 fYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVL 859 (1139)
T COG1197 807 FYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVL 859 (1139)
T ss_pred EEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEE
Confidence 567778888999888887 8999999999999999999999999999996
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=332.48 Aligned_cols=285 Identities=27% Similarity=0.428 Sum_probs=237.5
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~~ 175 (384)
....|.++++++.++++|.++||..||++|.++|+.+++|+|+|+++|||||||++|++|++..+....... .....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346799999999999999999999999999999999999999999999999999999999999987532111 1122578
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+|||+||++|++|+++.++.+.. ++.+..++||.....+.+.+. .+++|+|+||++|+.++..+...++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999998865 466777889887777666664 468999999999999998888899999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 253 EADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
|+|++++++|...+..+++.++. +.|++++|||++..+.+++..++.++..+.+.+.. .....+.++..... ..+
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~-~~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVA-GSD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEec-chh
Confidence 99999999999999999998864 67999999999999999999999999988775332 23334444444443 233
Q ss_pred hHHHHH--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENAL--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...+. ++.++.++.++..|...++.+..+||+|+.++|++++++|++|+++|+
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vL 389 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEE
Confidence 433332 233477788888888889999999999999999999999999998874
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=316.65 Aligned_cols=278 Identities=31% Similarity=0.486 Sum_probs=234.1
Q ss_pred CCccCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 99 LDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 99 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
..|++++ |++++++++..+||..+||.|..+||.++.++|+++.++||||||++|++|++..+.....+.... ..-+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vga 82 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGA 82 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeE
Confidence 3466665 559999999999999999999999999999999999999999999999999999986544332221 3469
Q ss_pred EEEecCHHHHHHHHHHHHHh---CCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHcc--CCCCCCccEEE
Q 016712 177 LVLAPTRELAKQVEKEFHES---APSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN--ALNLSEVQFVV 250 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~--~~~~~~l~~vV 250 (384)
|||+|||||+.|+.+.+..+ .+++.+.++.||.+..+....+.+ +++|+|||||+|.+++.+. .++++.+.++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999887664 457888999999888888777754 7999999999999999874 44566999999
Q ss_pred EeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 251 iDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
+||||++++.||...+..|+..+|+.+.+=+||||...++.++...+++||+.|.+...........+..+|..+. .++
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~-a~e 241 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE-ADE 241 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec-HHH
Confidence 9999999999999999999999999999999999999999999999999999998864444446677888888875 678
Q ss_pred hHHHHHHHHhH--------------hHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhc
Q 016712 331 KVENALFSLKQ--------------NVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 331 k~~~l~~~~~~--------------~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
|...+++.+.+ .++-.+..+... ...+..+||.|.+++|.+++++|++
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 88877776653 233333333332 7789999999999999999999997
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=318.19 Aligned_cols=301 Identities=28% Similarity=0.461 Sum_probs=264.5
Q ss_pred ccHHHHhhhhcccccccc--CCCCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchh
Q 016712 73 SSIAWQHAQSAVDDYVAY--DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150 (384)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT 150 (384)
.+.+|+.......+..++ .+....++.+|+++.|..+++..+.++||++|+|+|.++||.++.|+|++..+..|+|||
T Consensus 57 ~~~dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT 136 (459)
T KOG0326|consen 57 NGKDWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKT 136 (459)
T ss_pred cchhhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCc
Confidence 567898765444433333 345677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEEC
Q 016712 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGT 228 (384)
Q Consensus 151 ~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~T 228 (384)
-+|++|+++.+.. ....-+++|++||++||.|+...++++.+. +.+.+.+||++..+..-.+..+++++|||
T Consensus 137 ~a~~IP~Lekid~------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgT 210 (459)
T KOG0326|consen 137 AAYCIPVLEKIDP------KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGT 210 (459)
T ss_pred cceechhhhhcCc------cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcC
Confidence 9999999999843 245678999999999999999999988764 55667889999999888888999999999
Q ss_pred chhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 229 p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
||+++++...+...++++.++|+||||.+++..|...++.++..+|+++|++++|||+|-.+..+..+++.+|..|++.
T Consensus 211 PGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM- 289 (459)
T KOG0326|consen 211 PGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM- 289 (459)
T ss_pred ChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCcccccCCeEEEEEEeccchhhHHHH--------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhh
Q 016712 309 DSDQKLADGISLYSIATSMNMQKVENA--------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPF 374 (384)
Q Consensus 309 ~~~~~~~~~i~~~~~~~~~~~~k~~~l--------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~ 374 (384)
++..+.++.+||-.+. +..|..-+ +++..+.++-++..+.++|..|.++|+.|-++.|.+++.
T Consensus 290 --~eLtl~GvtQyYafV~-e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFH 366 (459)
T KOG0326|consen 290 --EELTLKGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFH 366 (459)
T ss_pred --hhhhhcchhhheeeec-hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhh
Confidence 5578899999998876 33443322 345557888888889999999999999999999999999
Q ss_pred hhhcCCccc
Q 016712 375 QLSEMDVSI 383 (384)
Q Consensus 375 ~F~~~~~~V 383 (384)
+|++|..+.
T Consensus 367 dFr~G~crn 375 (459)
T KOG0326|consen 367 DFRNGKCRN 375 (459)
T ss_pred hhhccccce
Confidence 999998653
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=323.24 Aligned_cols=279 Identities=29% Similarity=0.427 Sum_probs=239.0
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++..+.. ...++++|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~l 100 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQAL 100 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEE
Confidence 467999999999999999999999999999999999999999999999999999999999987732 12467899
Q ss_pred EEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 178 VLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
||+||++|+.|+.+.+..++.. ..+..+.|+.........+..+++|+|+||+++.+.+..+...++++++|||||+|
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999999888753 34555778877777777788889999999999999998888889999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
++.+.+|...+..+++.++++.|++++|||+|+.+..+...++.++..+.+... .....++.++++.......+...+
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 258 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD--ELTLEGIRQFYVAVEKEEWKFDTL 258 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC--CcccCCceEEEEecChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765432 234566677776665444443332
Q ss_pred H--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 L--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
. ++..++++.++..+...++.+..+||+|++++|++++++|++|+++|+
T Consensus 259 ~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vL 321 (401)
T PTZ00424 259 CDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 321 (401)
T ss_pred HHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 2 233467888888898889999999999999999999999999999875
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=316.79 Aligned_cols=282 Identities=28% Similarity=0.456 Sum_probs=247.7
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|++..|++...+++.++||.++|++|+.+|+.++.|+|+++.|.||+|||++|++|+++.+........ .+..++
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vl 158 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVL 158 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEE
Confidence 456889999999999999999999999999999999999999999999999999999999999987544432 567899
Q ss_pred EEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeC
Q 016712 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDE 253 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDE 253 (384)
||+|||+||.|++.+++++.. +..+..+.||.....+.+.+..+++|+|+|||+|.+++.+. .+.+++++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 999999999999999888653 56788899999999888889889999999999999999874 45678889999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcC-CCeEEEecCCCcccccCCeEEEEEEeccchhhH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (384)
||++++.||..+++.|++.+|+.+|.++||||.|+.+++++...+. +|+.|++....+....+++.|.++.+.... +.
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f 317 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RF 317 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hH
Confidence 9999999999999999999999999999999999999999998876 599999988777788888999888776443 35
Q ss_pred HHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcc
Q 016712 333 ENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVS 382 (384)
Q Consensus 333 ~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~ 382 (384)
..++..+. ..+.-++.+|....+.|.-+||++++..|..+...|++-+--
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg 382 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG 382 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc
Confidence 55544444 333466778888899999999999999999999999987643
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=315.57 Aligned_cols=288 Identities=32% Similarity=0.462 Sum_probs=250.0
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc---cCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGR 170 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---~~~ 170 (384)
-+.+..+|++.+++.++++.+.+.||..|+|+|..+||..++.+|+|.++.||||||.+|++|++..+...... ...
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 34567889999999999999999999999999999999999999999999999999999999999988764421 123
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
..||.++++.||++|++|+.++-.+++. +++++.+.||.+..++--.+..||+|+|+||++|.+.+.+..+.++++.+
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 4689999999999999999999888875 46677789999998888889999999999999999999999999999999
Q ss_pred EEEeCcccccCCChHHHHHHHHHHCCC---C----------------------CcEEEEEccCChhHHHHHHHhcCCCeE
Q 016712 249 VVLDEADQMLSVGFAEDVEVILERLPQ---N----------------------RQSMMFSATMPPWIRSLTNKYLKNPLT 303 (384)
Q Consensus 249 vViDEah~~~~~~~~~~~~~il~~l~~---~----------------------~q~l~~SAT~~~~~~~~~~~~l~~~~~ 303 (384)
||+||||+|.|+||.+++..++..+|. . +|+++||||+|+.+..+++.|+.+|++
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 999999999999999999999999863 1 699999999999999999999999998
Q ss_pred EEecCCCcccccCCeEEEEEEeccchhhHHHHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhh
Q 016712 304 VDLVGDSDQKLADGISLYSIATSMNMQKVENALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKAR 369 (384)
Q Consensus 304 i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR 369 (384)
+.+. ......+.+.|.++.... +.|...+.. |..+.++-++..|...|+.|..|||+-+++||
T Consensus 480 vtig--~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 480 VTIG--SAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred EEec--cCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 8763 333445556666666653 333443322 34478889999999999999999999999999
Q ss_pred hchhhhhhcCCcccC
Q 016712 370 GRGPFQLSEMDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~~~~~V~ 384 (384)
+.+++.|++|..||+
T Consensus 557 e~aL~~fr~~t~dIl 571 (673)
T KOG0333|consen 557 ENALADFREGTGDIL 571 (673)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999988874
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=305.15 Aligned_cols=280 Identities=31% Similarity=0.411 Sum_probs=236.8
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|+.||+++++.+.|..+|+++|||+|..|||.+++|+|+|.+|.||||||.+|.+|+++++.++ ..|..++
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFal 79 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFAL 79 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceEE
Confidence 3569999999999999999999999999999999999999999999999999999999999999663 3577899
Q ss_pred EEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc----CCCCCCccEEEE
Q 016712 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVL 251 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~----~~~~~~l~~vVi 251 (384)
|++||++|+.|+.+.|..+++ ++++.+++||...-.+...+...+||+|+|||++.+++..+ ...+++++++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 999999999999999999886 66788899999988888899999999999999999999776 234789999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k 331 (384)
||||++++..|...++.+.+.+|..+|.++||||+.+.+.++..--...+....+....+....+.+.+.|+.+.... |
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-k 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-K 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-h
Confidence 999999999999999999999999999999999999988877665555432222222344566667777777765332 2
Q ss_pred HHHHHHHH-----------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSL-----------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~-----------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
-..+++.+ -..++.++..|..+++++..+||.|++++|-..+.+|+.+.+.|+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~il 308 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARIL 308 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEE
Confidence 22222222 255667777788889999999999999999999999999988764
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=315.71 Aligned_cols=284 Identities=26% Similarity=0.393 Sum_probs=231.6
Q ss_pred CCCCCccCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 96 DEGLDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
-.+..|+.+||++.++..|+. |++..||.+|.++||.+++|+|++|.++||||||++|++|+++.++....+-.+..|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 456789999999999999997 7999999999999999999999999999999999999999999999888777788899
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCCCCc---eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vV 250 (384)
.+|||+||||||.|+|+.++++...+. .+.+.||...+.+...+.+|++|+|+|||+|.+++.+ ..+.++++++||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 999999999999999999999876543 3457888888888899999999999999999999977 467899999999
Q ss_pred EeCcccccCCChHHHHHHHHHHCC-------------CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCC-------
Q 016712 251 LDEADQMLSVGFAEDVEVILERLP-------------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS------- 310 (384)
Q Consensus 251 iDEah~~~~~~~~~~~~~il~~l~-------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~------- 310 (384)
+||+|++++.||..++..|++.+. ...|.+++|||+...+..++..-+.||+.|.++...
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 999999999999999999999872 236889999999999999999999999999832110
Q ss_pred ----------------cccccCCeEEEEEEeccchhhHHHHHHHHhH------------------hHHHHHHHHHh----
Q 016712 311 ----------------DQKLADGISLYSIATSMNMQKVENALFSLKQ------------------NVMQTAWLMLW---- 352 (384)
Q Consensus 311 ----------------~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~------------------~~~~~~~~l~~---- 352 (384)
...+.+.+.+.|..++.. -++..+...+.+ .++-.+..|..
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 012334455566555532 222223222222 22222222221
Q ss_pred ------------------hcceEEEecCCCChhhhhchhhhhhcCC
Q 016712 353 ------------------LKVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 353 ------------------~~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.+.++.-+||+|++++|..+++.|..-+
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~ 497 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR 497 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc
Confidence 1557999999999999999999998644
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=337.68 Aligned_cols=312 Identities=14% Similarity=0.154 Sum_probs=244.9
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
.++.+++|.+ ++.+.+|.++ ..++++++++..|++++.++.+.+. |+.+....+..|.. +..+++
T Consensus 366 ~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~~---~~~~~~ 442 (926)
T TIGR00580 366 GEDKLYVPVEQLHLISRYVGGSGKNPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFPP---DLEWQQ 442 (926)
T ss_pred CCCEEEEEHHHcCceeeecCCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CHHHHH
Confidence 5688999999 9999999875 4789999999999999888776654 55556666766644 778888
Q ss_pred HHHHc-CCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 113 ALARR-GISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 113 ~l~~~-g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+.+. +| +||++|.+||+.++++ +|++++||||+|||++|++|++..+.. +++++|++||++|
T Consensus 443 ~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlvLvPT~~L 512 (926)
T TIGR00580 443 EFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAVLVPTTLL 512 (926)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEEEeCcHHH
Confidence 88875 66 6999999999999986 799999999999999999999988743 6899999999999
Q ss_pred HHHHHHHHHHhCCCC--ceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 186 AKQVEKEFHESAPSL--DTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 186 a~q~~~~~~~~~~~~--~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
|.|+++.|++++.++ ++..++|+....+.. ..+.. .++|+||||.. + ...+.++++++|||||+|+
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahr--- 584 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQR--- 584 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccc---
Confidence 999999999987654 455677766544433 33444 48999999842 2 3556789999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH----
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA---- 335 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l---- 335 (384)
|+......++.++.++|+++||||+++++..+...++.++..|...+.... .+..++........ .+.+
T Consensus 585 --fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~----~V~t~v~~~~~~~i-~~~i~~el 657 (926)
T TIGR00580 585 --FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL----PVRTFVMEYDPELV-REAIRREL 657 (926)
T ss_pred --cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc----ceEEEEEecCHHHH-HHHHHHHH
Confidence 566667778888889999999999999998888888889988876544322 23334332211110 1111
Q ss_pred --------HHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 --------LFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 --------~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++..+.++.++..|... ++++..+||+|++++|++++++|++|+++|+
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~IL 716 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVL 716 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 233446777888888775 7899999999999999999999999999985
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=304.49 Aligned_cols=288 Identities=28% Similarity=0.450 Sum_probs=244.8
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc--cCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK--HGRG 171 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~--~~~~ 171 (384)
.+.+..+|.++.++..+++.|++.|+.+|||+|.+.+|.+++|+|+|..+-||||||++|++|++...++.... -.++
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 44566789999999999999999999999999999999999999999999999999999999998877654322 2346
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--------CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCC
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL 243 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~ 243 (384)
.||..|||||+|+||.|.++.+..++ |.++...+.||.+..++...+..|.+|+|+|||+|.+++....+.+
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 79999999999999999998877653 3556778899999999999999999999999999999999999999
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~ 323 (384)
.-++++++||||+|.+.||..++..|+..+...+|+++||||+|..++.+++.-+-.|++|++-..- ...-++.+...
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG--AAsldViQevE 402 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG--AASLDVIQEVE 402 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc--ccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999974321 11111221111
Q ss_pred EeccchhhHHHHHHHHh-------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 324 ATSMNMQKVENALFSLK-------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 324 ~~~~~~~k~~~l~~~~~-------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+ ..+.|...++.++. ..+..+.++|.-.|+.+..+|||-.+++|...++.|+.|+-||+
T Consensus 403 yV-kqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVL 475 (610)
T KOG0341|consen 403 YV-KQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVL 475 (610)
T ss_pred HH-HhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceE
Confidence 12 12334333333333 56678888888889999999999999999999999999999985
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=308.59 Aligned_cols=283 Identities=30% Similarity=0.453 Sum_probs=242.0
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc--CCC--CCC
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRG--RNP 174 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~--~~~--~~~ 174 (384)
..|.+-.+.+.+...+...||..|||+|+.+||.+..|+|+++||+||+|||.+|++|++..+.+..... ... ..|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 3677777899999999999999999999999999999999999999999999999999999998754321 111 358
Q ss_pred EEEEEecCHHHHHHHHHHHHHhC--CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 175 LCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+++|++||+|||.|++++.+++. ..+.....||+.+...+.+.+.++|||+|+|||+|.+++..+.+.+.+++++|+|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 99999999999999999999975 3677888999999999999999999999999999999999999999999999999
Q ss_pred CcccccC-CChHHHHHHHHHHCCC----CCcEEEEEccCChhHHHHHHHhcCC-CeEEEecCCCcccccCCeEEEEEEec
Q 016712 253 EADQMLS-VGFAEDVEVILERLPQ----NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 253 Eah~~~~-~~~~~~~~~il~~l~~----~~q~l~~SAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
|||+|+| .+|.+++..|+..... +.|.++||||+|..+..++..|+.+ ++.+.+. .-.....++.+....+.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVN 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeec
Confidence 9999999 9999999999998743 7899999999999999999999987 5555542 22355667777777775
Q ss_pred cchhhHHHHHHHH-----------------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 327 MNMQKVENALFSL-----------------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 327 ~~~~k~~~l~~~~-----------------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
.. +|...++..+ .+.+..+...+...++.+..+||.-++.||++.++.|++|.+.|
T Consensus 312 ~~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pv 390 (482)
T KOG0335|consen 312 EM-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPV 390 (482)
T ss_pred ch-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcce
Confidence 33 3333333322 25566888888999999999999999999999999999999876
Q ss_pred C
Q 016712 384 Y 384 (384)
Q Consensus 384 ~ 384 (384)
+
T Consensus 391 l 391 (482)
T KOG0335|consen 391 L 391 (482)
T ss_pred E
Confidence 3
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=327.08 Aligned_cols=290 Identities=32% Similarity=0.483 Sum_probs=254.9
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCC
Q 016712 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (384)
Q Consensus 92 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 171 (384)
...+.+...|.+.|++..++..++++||.+|+|+|.+|||+++.|+|+|.+|.||||||++|++|++.++.... ....+
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr-~~~~g 436 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR-PLEEG 436 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC-ChhhC
Confidence 34556778999999999999999999999999999999999999999999999999999999999997775533 33446
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC---CCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~---~~~~l 246 (384)
.||.+||++||++|+.|+.+.++.+.. ++.+++++|+....++...+++|+.|+|||||+.++++-.+.- ++.++
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccc
Confidence 699999999999999999999988764 6788999999999999999999999999999999999966544 45556
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
.++|+||+|+|++.+|.+++..|+..+++.+|++++|||+|..+..++...+..|+.|.+. -...+...+.+.+..+.
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCA 594 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEec
Confidence 6999999999999999999999999999999999999999999999999999999987664 34466777888888887
Q ss_pred cchhhHHHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 327 MNMQKVENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 327 ~~~~k~~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..++|...++..+. +.+..+...|...|+.|..+||+-++.+|..++++|+++.+.++
T Consensus 595 ~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LL 667 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLL 667 (997)
T ss_pred CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEE
Confidence 67888877766555 55556677778889999999999999999999999999988764
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=340.84 Aligned_cols=314 Identities=13% Similarity=0.126 Sum_probs=246.4
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
.++.+++|.+ +..+.+|.++ ..++++++++..|++.+.++.+.+. |+.+...++..|.. +..+++
T Consensus 515 ~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~---~~~~~~ 591 (1147)
T PRK10689 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH---DREQYQ 591 (1147)
T ss_pred CCCeEEeeHHHhCcEeeecCCCCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---CHHHHH
Confidence 4688999999 9999999875 4788999999999999888777665 56667777777755 677777
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+.+.....||++|.+||+.++.+ +|++++|+||+|||++|+++++..+. .+++++||+||++||
T Consensus 592 ~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHH
Confidence 776653337999999999999987 89999999999999999999887763 478999999999999
Q ss_pred HHHHHHHHHhCCC--CceEEEECCCChHHHHHHHh----cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 187 KQVEKEFHESAPS--LDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 187 ~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.|+++.|++.+.. +++.+++|+.+..++...+. .+++|+||||+.+ +..+.++++++|||||+|++
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf--- 734 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF--- 734 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc---
Confidence 9999999987754 45666778777666554443 3589999999643 24566889999999999995
Q ss_pred ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH-----
Q 016712 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA----- 335 (384)
Q Consensus 261 ~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l----- 335 (384)
+......++.++.++|+++||||+++++..+...+++++..|...+.... .+..+.........+...+
T Consensus 735 --G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~----~v~~~~~~~~~~~~k~~il~el~r 808 (1147)
T PRK10689 735 --GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL----AVKTFVREYDSLVVREAILREILR 808 (1147)
T ss_pred --chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCC----CceEEEEecCcHHHHHHHHHHHhc
Confidence 33446667888889999999999999999999999999999987544321 2333333222111111111
Q ss_pred ------HHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 ------LFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ------~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++..+.+++++..+... ++++.++||+|++++|++++.+|++|++||+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VL 865 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEE
Confidence 234446677888888776 7899999999999999999999999999985
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=290.22 Aligned_cols=277 Identities=27% Similarity=0.446 Sum_probs=243.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.+|++++|++.+++.+...||++|+.+|+.||.++.+|.|+++.+++|+|||.+|.+++++.+.. .....++++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qali 99 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALI 99 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999998733 234678999
Q ss_pred EecCHHHHHHHHHHHHHhCCCC--ceEEEECCCChHHHHH-HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMR-ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~--~~~~~~g~~~~~~~~~-~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
++||++|+.|+.+....++... .+..+.||.....+.. ....+++|+||||+++.+++..+.+..+.++++|+||+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999999999999888644 5555677777664444 444568999999999999999888888899999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
.|+..||..++..+.+.++++.|++++|||.|+++....+.|+++|+.|.+. .++..+.+++++++.+...+ |.+.+
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk--k~~ltl~gikq~~i~v~k~~-k~~~l 256 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK--KDELTLEGIKQFYINVEKEE-KLDTL 256 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec--chhhhhhheeeeeeeccccc-cccHH
Confidence 9999999999999999999999999999999999999999999999999874 44577999999999887655 66654
Q ss_pred ------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 ------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.+..+...|...+..+.++||.|.+.+|+.++..|+.|...|+
T Consensus 257 ~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvl 317 (397)
T KOG0327|consen 257 CDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVL 317 (397)
T ss_pred HHHHHhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEE
Confidence 3344566777888888889999999999999999999999999998764
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=291.66 Aligned_cols=286 Identities=32% Similarity=0.471 Sum_probs=230.2
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhc----
Q 016712 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEK---- 167 (384)
Q Consensus 93 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---- 167 (384)
.......+|..|+++.+++++|..+||..||++|..++|++..| .|++..|.||||||++|.+|+++.+......
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34445567999999999999999999999999999999999999 7999999999999999999999966432110
Q ss_pred -cCCCCCCE--EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-
Q 016712 168 -HGRGRNPL--CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL- 241 (384)
Q Consensus 168 -~~~~~~~~--~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~- 241 (384)
.....+++ +||++||||||.|+.+.+....+ ++.+..++||.....+.+.+...++|||+|||+|+.++..+..
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 01122444 99999999999999999998764 7788889999999999999999999999999999999987654
Q ss_pred --CCCCccEEEEeCcccccCCChHHHHHHHHHHCC-----CCCcEEEEEccCChh---------------------HHHH
Q 016712 242 --NLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPW---------------------IRSL 293 (384)
Q Consensus 242 --~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-----~~~q~l~~SAT~~~~---------------------~~~~ 293 (384)
++++++++|+||+|+|++.|...++..+++.+. ..+|+++||||++-. ++.+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 578899999999999999998889999988875 368999999998421 2233
Q ss_pred HHH--hcCCCeEEEecCCCc------------ccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEE
Q 016712 294 TNK--YLKNPLTVDLVGDSD------------QKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVS 359 (384)
Q Consensus 294 ~~~--~l~~~~~i~~~~~~~------------~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~ 359 (384)
+.. +...|.+|.+.+... .+.......||.... ...+ -.+++|.++.+.+++-+|..+++....
T Consensus 415 mk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r-yPGr-TlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR-YPGR-TLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee-cCCc-eEEEechHHHHHHHHHHHhhcCCCCch
Confidence 332 223578888754431 122233444554443 2222 246788999999999999999999999
Q ss_pred ecCCCChhhhhchhhhhhcCC
Q 016712 360 LCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 360 ~hg~m~~~eR~~il~~F~~~~ 380 (384)
+|+.|.+++|-+.+++|++..
T Consensus 493 LHA~M~QKqRLknLEkF~~~~ 513 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSP 513 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCC
Confidence 999999999999999999854
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=306.77 Aligned_cols=266 Identities=21% Similarity=0.249 Sum_probs=201.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 105 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
.+++.+.++|.++||.+||++|.++|+.+++|+|+++++|||||||++|++|+++.+.. ..+.++|||+||++
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHH
Confidence 37999999999999999999999999999999999999999999999999999999865 24678999999999
Q ss_pred HHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc----cCCCCCCccEEEEeCcccccC
Q 016712 185 LAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR----NALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 185 La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~----~~~~~~~l~~vViDEah~~~~ 259 (384)
|++|+++.++++.. ++.+..+.|+.. ..+...+..+++|+|+||+++...+.. +...++++++|||||+|.|.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999999999862 456666666655 445556667799999999999754432 122378999999999999977
Q ss_pred CChHHHHHHHHHHC-------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEecc-----
Q 016712 260 VGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM----- 327 (384)
Q Consensus 260 ~~~~~~~~~il~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----- 327 (384)
. |+..+..+++++ +.+.|++++|||+++... ++..++..+..+ +..+ .. ......+......
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~--~~-~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTED--GS-PRGARTVALWEPPLTELT 245 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCC--CC-CcCceEEEEecCCccccc
Confidence 4 887777666654 457899999999998855 567777777654 2211 11 1111222211111
Q ss_pred -----------chhhHHHH------------HHHHhHhHHHHHHHHHhh--------cceEEEecCCCChhhhhchhhhh
Q 016712 328 -----------NMQKVENA------------LFSLKQNVMQTAWLMLWL--------KVIIVSLCMGISHKARGRGPFQL 376 (384)
Q Consensus 328 -----------~~~k~~~l------------~~~~~~~~~~~~~~l~~~--------~~~v~~~hg~m~~~eR~~il~~F 376 (384)
..++...+ +++.++.++.++..+... +.++..|||+|++++|++++++|
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 11222222 223446677777766543 57899999999999999999999
Q ss_pred hcCCcccC
Q 016712 377 SEMDVSIY 384 (384)
Q Consensus 377 ~~~~~~V~ 384 (384)
++|+++|+
T Consensus 326 ~~G~i~vL 333 (742)
T TIGR03817 326 RDGELLGV 333 (742)
T ss_pred HcCCceEE
Confidence 99999874
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=281.93 Aligned_cols=277 Identities=30% Similarity=0.454 Sum_probs=246.9
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
-.|..+||+..+.+++.+.||..|||+|+.+||.+++++|++..+-||||||.+|++|+++++.... +.|.++++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Rali 95 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALI 95 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceee
Confidence 5699999999999999999999999999999999999999999999999999999999999986532 46789999
Q ss_pred EecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 179 LAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
++||++|+.|..+.+++++. +++..+.+|+....++...+..++|||++||+++.++.-.-.+.++.+.|||+||+|+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999886 5667788999999999999999999999999999988877668899999999999999
Q ss_pred ccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH
Q 016712 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (384)
++++||.+++.+++.+++.+.|+++||||+|+.+-.+++..+.+|+.+++ +.+..+.+.++.....+. .++|...++
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRl--dvetkise~lk~~f~~~~-~a~K~aaLl 252 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRL--DVETKISELLKVRFFRVR-KAEKEAALL 252 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEe--ehhhhcchhhhhheeeec-cHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 455577777776666665 456666666
Q ss_pred HHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 337 FSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 337 ~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.+. .+++-+...+...|+.+..+.|.|.++.|...+.+|+.+...+
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~ 314 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSI 314 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccce
Confidence 5544 4566777788888999999999999999999999999887543
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=276.94 Aligned_cols=278 Identities=25% Similarity=0.330 Sum_probs=238.7
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
-...+|++|.|.|++++.+..|+|.+|+.+|..++|.++.. +|+|.++..|+|||.+|.+.++.++.. ....
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~~ 160 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVVV 160 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------cccC
Confidence 34568999999999999999999999999999999999876 799999999999999999999998843 2457
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE--CCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--GGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vV 250 (384)
|+++.|+||++||.|+.+.+.+.++..++...+ .+.. ..+.-.-..+|+||||+.+.+++.. ..+.+..++.+|
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfV 237 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK---AKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFV 237 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---cccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEE
Confidence 889999999999999999999998755433322 2220 0001011258999999999999987 788899999999
Q ss_pred EeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccch
Q 016712 251 LDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM 329 (384)
Q Consensus 251 iDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 329 (384)
+||||.|++. ||+.+-..|+..+|+++|+++||||+...+..++..++.++..+.+. .++..+.++.++++.|...+
T Consensus 238 lDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRD 315 (477)
T ss_pred ecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchh
Confidence 9999999865 69999999999999999999999999999999999999999988874 45578899999999999999
Q ss_pred hhHHHHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 330 QKVENALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 330 ~k~~~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.|...+... .+..++.++..+...|..|.++||+|+.++|.+++++|++|+..|+
T Consensus 316 ~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVL 384 (477)
T KOG0332|consen 316 DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVL 384 (477)
T ss_pred hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEE
Confidence 999877442 2377778888999999999999999999999999999999998774
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=291.90 Aligned_cols=280 Identities=28% Similarity=0.416 Sum_probs=245.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.....|+++-+..+++..|...+|..||++|..|||.+..++|+||++..|+|||++|...+++.+.. +...++
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q 95 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQ 95 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcce
Confidence 34567999999999999999999999999999999999999999999999999999999888887643 345789
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
.+|++|||+++.|+.+++..+++ ++++.++.||+........+++ ++|+|||||++.+++..+.++...++++|+|
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLD 174 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEec
Confidence 99999999999999999999876 7788999999988877776665 7999999999999999999999999999999
Q ss_pred CcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh-
Q 016712 253 EADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ- 330 (384)
Q Consensus 253 Eah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~- 330 (384)
|||.+.+. .|..++..|+..+|..+|++.+|||.|..+.+.+.+|+++|-.|++. .+...+-++++|+.......-
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n--~~d~~L~GikQyv~~~~s~nns 252 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFN--ADDVQLFGIKQYVVAKCSPNNS 252 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecc--cCCceeechhheeeeccCCcch
Confidence 99999984 59999999999999999999999999999999999999999999884 455788899999987664421
Q ss_pred ------hHHH--------------HHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 ------KVEN--------------ALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 ------k~~~--------------l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|... +++.....++.++..|...|++|.++.|.|++.+|.-+++.+++-..+|+
T Consensus 253 veemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rIL 326 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRIL 326 (980)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEE
Confidence 2221 23344566777888888889999999999999999999999998766653
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=297.57 Aligned_cols=179 Identities=25% Similarity=0.360 Sum_probs=155.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.|+++++++.+++.+.+.||.+|+|+|.+|++. +..|+|+++++|||||||++|.+|++..+. .++++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~~kal 71 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RGGKAL 71 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cCCcEE
Confidence 3688999999999999999999999999999998 788999999999999999999999999883 367899
Q ss_pred EEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
||+|+++||.|+++.|+++.+ ++++..++|+...... ....++|+|+||+++..++..+..+++++++|||||+|.
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 999999999999999998643 5777788887654332 223579999999999988887666789999999999999
Q ss_pred ccCCChHHHHHHHHHHC---CCCCcEEEEEccCChh
Q 016712 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPW 289 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l---~~~~q~l~~SAT~~~~ 289 (384)
+.+.+++..++.++.++ .++.|++++|||+++.
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~ 184 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA 184 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH
Confidence 99888999988887665 4689999999999863
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=248.13 Aligned_cols=200 Identities=44% Similarity=0.774 Sum_probs=181.4
Q ss_pred ccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe
Q 016712 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (384)
Q Consensus 101 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~ 180 (384)
|+++++++.+++.|.+.|+..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.... ...+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 67899999999999999999999999999999999999999999999999999999999886531 12478899999
Q ss_pred cCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 181 Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
|+++|+.|+.+.++.+.. ++.+..++|+.........+..+++|+|+||+.+.+.+..+...+++++++|+||+|.+.
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 999999999999988764 566777888888777766776689999999999999998888889999999999999999
Q ss_pred CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEE
Q 016712 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (384)
Q Consensus 259 ~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 304 (384)
+.+++..+..+++.++.++|++++|||+++.+..+...++.+|+.|
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8889999999999999999999999999999999999999999876
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=285.65 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=196.2
Q ss_pred CCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 103 ~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
.++....+...+.+ +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISP 508 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 508 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeC
Confidence 56777788888887 59999999999999999999999999999999999999999853 457999999
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh------cCCCEEEECchhHHH--HHHcc---CCCCCCccEEE
Q 016712 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVID--LIKRN---ALNLSEVQFVV 250 (384)
Q Consensus 182 t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~IlV~Tp~~l~~--~l~~~---~~~~~~l~~vV 250 (384)
+++|++++...+... +++...+.++....++...+. ..++|+|+||++|.. .+... ......+.+||
T Consensus 509 LiSLmqDQV~~L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999999777777664 477888888887766654443 358999999999853 22211 11234589999
Q ss_pred EeCcccccCCC--hHHHHHHH--HHHCCCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEE
Q 016712 251 LDEADQMLSVG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIA 324 (384)
Q Consensus 251 iDEah~~~~~~--~~~~~~~i--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~ 324 (384)
|||||++++|| |.+.+..+ +....+++|++++|||+++.+...+...+. ++..+.. . ....++ ++..
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~--S---f~RpNL--~y~V 659 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ--S---FNRPNL--WYSV 659 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec--c---cCccce--EEEE
Confidence 99999999998 88877654 444456789999999999998876666554 3333321 1 111222 2222
Q ss_pred eccchhhHH---------------HHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 325 TSMNMQKVE---------------NALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 325 ~~~~~~k~~---------------~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
........+ .+++..++.++.++..|...|+.+..|||+|++++|++++++|.+|+++|+
T Consensus 660 v~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 660 VPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred eccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 221111111 123334477889999999999999999999999999999999999999874
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=288.84 Aligned_cols=184 Identities=23% Similarity=0.365 Sum_probs=160.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.|+++++++.+.+.|.+.||.+|+|+|.++++. +..|+|+++++|||||||++|.+|++..+.. .+.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 578899999999999999999999999999986 7899999999999999999999999988753 3578999
Q ss_pred EecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
|+|+++|+.|+++.++.+.. ++++..++|+...... ....++|+|+||+++..++.....+++++++|||||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 99999999999999987532 5677778887654322 2345899999999998888777677899999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.+.+++..++.++.++..+.|++++|||+++. ..+..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~ 187 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE 187 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH
Confidence 98889999999999999999999999999863 44544
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=287.49 Aligned_cols=276 Identities=16% Similarity=0.220 Sum_probs=192.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+++.+.+.+.+ +|..|||+|.++|+.+++|+|+++++|||||||++|++|++..+...........+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 57777777666 78899999999999999999999999999999999999999998754322222346789999999999
Q ss_pred HHHHHHHHHH-------h----C---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC--CCCCccEE
Q 016712 186 AKQVEKEFHE-------S----A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFV 249 (384)
Q Consensus 186 a~q~~~~~~~-------~----~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~--~~~~l~~v 249 (384)
++|+++.+.+ . + +++.+.+.+|+....+..+.+.++++|+|+||++|..++..... .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876552 1 1 24567788899888777777788899999999999877765433 47899999
Q ss_pred EEeCcccccCCChHHHHHHHHHHC----CCCCcEEEEEccCChhHHHHHHHhcC--------CCeEEEecCCCcc---cc
Q 016712 250 VLDEADQMLSVGFAEDVEVILERL----PQNRQSMMFSATMPPWIRSLTNKYLK--------NPLTVDLVGDSDQ---KL 314 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~~l----~~~~q~l~~SAT~~~~~~~~~~~~l~--------~~~~i~~~~~~~~---~~ 314 (384)
||||+|.+.+..++..+...+.++ +.+.|++++|||+++. ..+.. ++. .++.+.-...... ..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~-~L~~~~~~~~~r~~~iv~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAK-FLVGYEDDGEPRDCEIVDARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHH-HhcCccccCCCCceEEEccCCCccceEEE
Confidence 999999999877776665555443 3678999999999763 22322 221 1222211000000 00
Q ss_pred cCCeEEEEEEecc--chhhHH------------HHHHHHhHhHHHHHHHHHhh------cceEEEecCCCChhhhhchhh
Q 016712 315 ADGISLYSIATSM--NMQKVE------------NALFSLKQNVMQTAWLMLWL------KVIIVSLCMGISHKARGRGPF 374 (384)
Q Consensus 315 ~~~i~~~~~~~~~--~~~k~~------------~l~~~~~~~~~~~~~~l~~~------~~~v~~~hg~m~~~eR~~il~ 374 (384)
............. ...... .++++.++.++.++..|... +..+.++||+|+.++|.++++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 0000000000000 000011 11234446677777777652 468999999999999999999
Q ss_pred hhhcCCcccC
Q 016712 375 QLSEMDVSIY 384 (384)
Q Consensus 375 ~F~~~~~~V~ 384 (384)
+|++|+++|+
T Consensus 335 ~fk~G~i~vL 344 (876)
T PRK13767 335 KLKRGELKVV 344 (876)
T ss_pred HHHcCCCeEE
Confidence 9999998874
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=268.75 Aligned_cols=247 Identities=20% Similarity=0.274 Sum_probs=182.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
+||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ++.+|||+|+++|+.|+.+.+...
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999998742 456999999999999999999876
Q ss_pred CCCCceEEEECCCChHHHHH---HHhc-CCCEEEECchhHHHHH-HccCC-CCCCccEEEEeCcccccCCC--hHHHHHH
Q 016712 197 APSLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLI-KRNAL-NLSEVQFVVLDEADQMLSVG--FAEDVEV 268 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l-~~~~~-~~~~l~~vViDEah~~~~~~--~~~~~~~ 268 (384)
+ +.+..+.++....+... .+.. ..+|+++||+++.... ....+ ...++++|||||||++++|| |...+..
T Consensus 75 g--i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 G--IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred C--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 4 66666777665443322 2223 4899999999975422 11112 46789999999999999987 6666655
Q ss_pred H--HHHCCCCCcEEEEEccCChhHHHHHHHhc--CCCeEEEecCCCcccccCCeEEEEEEeccchhhHHH----------
Q 016712 269 I--LERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN---------- 334 (384)
Q Consensus 269 i--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~---------- 334 (384)
+ +....++.+++++|||+++.+.......+ .++..+...-+ ..++. +.+... .....+.
T Consensus 153 l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-----r~nl~-~~v~~~-~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 153 LGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD-----RPNLY-YEVRRK-TPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-----CCCcE-EEEEeC-CccHHHHHHHHHHHhcC
Confidence 4 23333678999999999998877666554 35554432111 11221 111111 1111111
Q ss_pred -----HHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 335 -----ALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 335 -----l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++++.++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vL 280 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVV 280 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 12334578889999999999999999999999999999999999999874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=280.50 Aligned_cols=182 Identities=19% Similarity=0.259 Sum_probs=153.8
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
.|+++++++.+.+.+.+.||. ++++|.++++.+..|+|+++++|||||||+++.++++..+.. +.+++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i 71 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYI 71 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEE
Confidence 578899999999999999986 999999999999999999999999999999999999988743 5689999
Q ss_pred ecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 180 APTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
+|+++||.|+++.++++.. +..+...+|+...... ....++|+|+||+++..++.++...++++++|||||+|++.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999999999987542 5666777777554322 22457999999999998888777778999999999999999
Q ss_pred CCChHHHHHHHHHH---CCCCCcEEEEEccCChhHHHHHH
Q 016712 259 SVGFAEDVEVILER---LPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 259 ~~~~~~~~~~il~~---l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+.+++..++.++.. ++++.|+|++|||+++. .++..
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~ 187 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ 187 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH
Confidence 88888888877654 45689999999999763 44444
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=268.19 Aligned_cols=254 Identities=16% Similarity=0.156 Sum_probs=180.6
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 107 SQDIVAALAR-RGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 107 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+..+++.+.+ .+| +||++|.++++.+..+ ++++++||||||||++|++|++..+. .|.+++|+
T Consensus 247 ~~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------~g~q~lil 316 (681)
T PRK10917 247 DGELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALM 316 (681)
T ss_pred ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------cCCeEEEE
Confidence 4566666665 466 6999999999999887 48999999999999999999998873 47899999
Q ss_pred ecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 180 APTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++||.|+++.++++++. +++.+++|+.+..+.. ..+.. .++|+||||+.+. ..+.++++++|||||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEec
Confidence 99999999999999998764 6778889988754433 34444 4999999998763 345688999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|+ |+......+.....+.++++||||+.++...+......+...+...+.. ...+..++......+.-.+
T Consensus 392 ~Hr-----fg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~----r~~i~~~~~~~~~~~~~~~ 462 (681)
T PRK10917 392 QHR-----FGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG----RKPITTVVIPDSRRDEVYE 462 (681)
T ss_pred hhh-----hhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC----CCCcEEEEeCcccHHHHHH
Confidence 998 4444455555556678999999999888766654333343444322111 1112222222211111111
Q ss_pred HHHHH--------------------HhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------------LKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------------~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ....+...++.+... +.++..+||+|++++|++++++|++|+++|+
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 535 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDIL 535 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 11110 012234455555544 5789999999999999999999999999885
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=264.95 Aligned_cols=258 Identities=19% Similarity=0.246 Sum_probs=188.1
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 105 DISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 105 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
++++.....|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 344555566665 59999999999999999999999999999999999999999843 34699999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH---Hhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+|+.|+.+.++..+ +...++.++......... +.. ..+++++||+++........+...++++|||||||++.+
T Consensus 76 sL~~dqv~~l~~~g--i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 76 SLMKDQVDQLLANG--VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHHHcC--CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99999999998864 666667676655443322 222 479999999998743322334456799999999999999
Q ss_pred CC--hHHHHHHH--HHHCCCCCcEEEEEccCChhHHHHHHHhc--CCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 260 VG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 260 ~~--~~~~~~~i--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
|| |.+.+..+ +....++.+++++|||+++.+.......+ .+|.... .+- + ..++. +.+ ... ..+.+
T Consensus 154 ~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~-~---r~nl~-~~v-~~~-~~~~~ 225 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF-D---RPNIR-YTL-VEK-FKPLD 225 (607)
T ss_pred ccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCC-C---CCcce-eee-eec-cchHH
Confidence 87 66655444 22233578999999999998776544443 3554332 111 1 11222 111 111 11112
Q ss_pred HH--------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NA--------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l--------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+ +++.++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 226 ~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VL 290 (607)
T PRK11057 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIV 290 (607)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEE
Confidence 12 2344588889999999999999999999999999999999999999874
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=267.35 Aligned_cols=270 Identities=19% Similarity=0.254 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+++.+++++.+. |..|||.|.+|||.+.+|+|+|++||||||||+++.+|++..+.... ......+..+|||+|.++|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 588999999987 88999999999999999999999999999999999999999998753 2222357889999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC--CCCCCccEEEEeCcccccCCC
Q 016712 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVG 261 (384)
Q Consensus 186 a~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~l~~vViDEah~~~~~~ 261 (384)
.+++.+.+...+. ++++.+-+|+++..+..+...+.+||+|+|||.|.-++.... -.|.++++|||||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999988764 677888899999888888889999999999999987775533 258899999999999998777
Q ss_pred hHHHHHHHHHHCC---CCCcEEEEEccCChhHHHHHHHhcCC--CeEEEecCCCcccccCCeEEEEEEeccc--------
Q 016712 262 FAEDVEVILERLP---QNRQSMMFSATMPPWIRSLTNKYLKN--PLTVDLVGDSDQKLADGISLYSIATSMN-------- 328 (384)
Q Consensus 262 ~~~~~~~il~~l~---~~~q~l~~SAT~~~~~~~~~~~~l~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~-------- 328 (384)
.+.++..-+.++. .+.|.|++|||..+. ...++..... +..|.-.+.. .......+.....
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~-----k~~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA-----KKLEIKVISPVEDLIYDEELW 239 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC-----CcceEEEEecCCccccccchh
Confidence 7777666555542 379999999998754 3333322222 4444322111 1111111111111
Q ss_pred hhhHH------------HHHHHHhHhHHHHHHHHHhhc-ceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 329 MQKVE------------NALFSLKQNVMQTAWLMLWLK-VIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 329 ~~k~~------------~l~~~~~~~~~~~~~~l~~~~-~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
..... +++.|.+..+++++..|...+ ..+...||.++.++|..+.++|++|++++
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lra 307 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKA 307 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceE
Confidence 11111 113355678888988888876 89999999999999999999999999875
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=266.50 Aligned_cols=250 Identities=19% Similarity=0.223 Sum_probs=188.5
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 112 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
+.|++ +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 34655 69999999999999999999999999999999999999998742 446899999999999999
Q ss_pred HHHHHhCCCCceEEEECCCChHHHHHHH----hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC--hHH
Q 016712 191 KEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAE 264 (384)
Q Consensus 191 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~--~~~ 264 (384)
+.++.++ +.+..+.++....+....+ ....+|+++||+++........+...++++|||||||++.+|| |.+
T Consensus 71 ~~l~~~g--i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 71 DQLRAAG--VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 9999874 6777788877665543322 2358999999999975444444556789999999999999887 776
Q ss_pred HHHHHH---HHCCCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH----
Q 016712 265 DVEVIL---ERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA---- 335 (384)
Q Consensus 265 ~~~~il---~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l---- 335 (384)
.+..+. ..++ +.+++++|||+++.+...+...+. ++..+.. . ....++....... ..+...+
T Consensus 149 ~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~--~---~~r~nl~~~v~~~---~~~~~~l~~~l 219 (591)
T TIGR01389 149 EYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT--S---FDRPNLRFSVVKK---NNKQKFLLDYL 219 (591)
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec--C---CCCCCcEEEEEeC---CCHHHHHHHHH
Confidence 665553 3343 566999999999998877776664 3433321 1 1112222221111 1222222
Q ss_pred ----------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 ----------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ----------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.++.++..|...|+.+..|||+|+.++|++++++|.+|+++|+
T Consensus 220 ~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vl 278 (591)
T TIGR01389 220 KKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVM 278 (591)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 2234477889999999999999999999999999999999999999874
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-32 Score=238.37 Aligned_cols=223 Identities=31% Similarity=0.503 Sum_probs=199.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|.++-|.|++++++.+.||++|+..|.+|||...-|+|+++++.+|-|||.+|++..++.+.. ......+|+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vsvlv 115 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVSVLV 115 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEEEEE
Confidence 34788889999999999999999999999999999999999999999999999999999988743 123456999
Q ss_pred EecCHHHHHHHHHH---HHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
+|+||+||.|+.++ |.++.|++++.+++||...+...+.+++-++|+|||||+++.+.+++.+++++++.+|+||||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 99999999999655 566788999999999999998888888889999999999999999999999999999999999
Q ss_pred cccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc
Q 016712 256 QMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328 (384)
Q Consensus 256 ~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 328 (384)
.|+++ ..+.++++|.+..|...|+.+||||++++++..+++|+.+|..|-+. ++....+.++++||+.....
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~ 268 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKEN 268 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhh
Confidence 99864 47889999999999999999999999999999999999999999654 45557788889998877633
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=253.54 Aligned_cols=286 Identities=21% Similarity=0.266 Sum_probs=227.0
Q ss_pred CCCCCccC----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCC
Q 016712 96 DEGLDISK----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (384)
Q Consensus 96 ~~~~~f~~----l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 171 (384)
.+...|++ ...++.+++.+...||..|+|+|.+|+|.++.++|++.|+|||+|||++|.+|++.++....... ..
T Consensus 129 ~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~-~~ 207 (593)
T KOG0344|consen 129 PPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEK-HK 207 (593)
T ss_pred CccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhccc-Cc
Confidence 34456665 56788999999999999999999999999999999999999999999999999999997754322 24
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--CCC--ceEEEECCCChHH-HHHHHhcCCCEEEECchhHHHHHHccC--CCCC
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--PSL--DTICVYGGTPISH-QMRALDYGVDAVVGTPGRVIDLIKRNA--LNLS 244 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--~~~--~~~~~~g~~~~~~-~~~~~~~~~~IlV~Tp~~l~~~l~~~~--~~~~ 244 (384)
.|-+++|+.||++|+.|++.++.++. ++. .+..+.......+ ........++|+|+||.++...+..+. +.+.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 57899999999999999999999987 322 2222222211111 111112247999999999999998765 6789
Q ss_pred CccEEEEeCcccccCC-ChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEE
Q 016712 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~ 322 (384)
.+.++|+||+|++++. .|..++..|+..+. ++..+-+||||++.+++++++..+.++..|.+. ........+.|..
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg--~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG--LRNSANETVDQEL 365 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe--cchhHhhhhhhhh
Confidence 9999999999999998 89999999998875 577888999999999999999999999887652 2234456677777
Q ss_pred EEeccchhhHHHHHHHHh--------------HhHHHHHHHH-HhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 323 IATSMNMQKVENALFSLK--------------QNVMQTAWLM-LWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 323 ~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l-~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+.....|...+...+. +.+..+...| ...++++.++||..++.+|++.+++|+.|+|.|+
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvL 442 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVL 442 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEE
Confidence 777767777655533322 5555666666 6668999999999999999999999999999875
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=247.15 Aligned_cols=280 Identities=26% Similarity=0.325 Sum_probs=207.6
Q ss_pred CCccCCCCCHHHHHH----------HHHcCCCCCcHHHHHHHHHHhC---------CCcEEEEccCCCchhHHHHHHHHH
Q 016712 99 LDISKLDISQDIVAA----------LARRGISKLFPIQKAVLEPAMQ---------GRDMIGRARTGTGKTLAFGIPILD 159 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~----------l~~~g~~~~~~~Q~~~i~~i~~---------g~d~li~a~TGsGKT~~~~lp~l~ 159 (384)
-.|+.+++++..... +.++++....|+|..++|.++. ++|+.+.||||||||++|.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 346777777665554 8899999999999999998853 479999999999999999999999
Q ss_pred HHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcC-----CCEEEECchhH
Q 016712 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYG-----VDAVVGTPGRV 232 (384)
Q Consensus 160 ~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~-----~~IlV~Tp~~l 232 (384)
.+.... -+.-+++||+||++|+.|++++|.++.++ +.|..+.|..+...+...+.+. .||+|+|||+|
T Consensus 207 ~L~~R~-----v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 207 LLSSRP-----VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred HHccCC-----ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 985421 23468999999999999999999999874 4455567777777777777653 49999999999
Q ss_pred HHHHH-ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC----------------------------------CCCC
Q 016712 233 IDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----------------------------------PQNR 277 (384)
Q Consensus 233 ~~~l~-~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l----------------------------------~~~~ 277 (384)
.+++. ...+.+++++++||||||+|++..|..-+..++..+ .+..
T Consensus 282 VDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l 361 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPL 361 (620)
T ss_pred HHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchh
Confidence 99998 468899999999999999999876654443333322 1234
Q ss_pred cEEEEEccCChhHHHHHHHhcCCCeEEEecC--CCcccccCCeEEEEEEeccchhhHHHHHHH--------------HhH
Q 016712 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSDQKLADGISLYSIATSMNMQKVENALFS--------------LKQ 341 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~--------------~~~ 341 (384)
+.+.+|||+...-..+...-+..|....+.. .........+.++.+.++.. .|...+... ..+
T Consensus 362 ~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~-~kpl~~~~lI~~~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK-FKPLAVYALITSNKLNRTLCFVNSVS 440 (620)
T ss_pred HhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc-cchHhHHHHHHHhhcceEEEEecchH
Confidence 5888899988777777776777775443321 12234445556666655432 222222221 225
Q ss_pred hHHHHHHHHH----hhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 342 NVMQTAWLML----WLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 342 ~~~~~~~~l~----~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+.+++..|. .....+..|.|+++.+.|.+.+.+|..|++.|+
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vL 487 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVL 487 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEE
Confidence 5556666554 346778889999999999999999999999875
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=265.71 Aligned_cols=246 Identities=19% Similarity=0.128 Sum_probs=185.8
Q ss_pred HHHH-cCCCCCcHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE-EecCHHHHHHH
Q 016712 113 ALAR-RGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQV 189 (384)
Q Consensus 113 ~l~~-~g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv-l~Pt~~La~q~ 189 (384)
.+.+ .||. |||||.++++.++.|+ ++++++|||||||.++.++.+.. .. ....++.|| ++|||+|+.|+
T Consensus 7 ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~------~~~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 7 WYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI------GAKVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc------cccccceEEEeCchHHHHHHH
Confidence 3444 4997 9999999999999998 57778999999999765444422 11 123455555 67999999999
Q ss_pred HHHHHHhCC-------------------------CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC---
Q 016712 190 EKEFHESAP-------------------------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--- 241 (384)
Q Consensus 190 ~~~~~~~~~-------------------------~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~--- 241 (384)
++.+.+++. .+.+.+++||.....+...+..+++|||||+ +++.++.+
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~g 154 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSG 154 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccc
Confidence 999888664 2556778999999999999999999999995 44444443
Q ss_pred -------------CCCCccEEEEeCcccccCCChHHHHHHHHHHC--CC---CCcEEEEEccCChhHHHHHHHhcCCCeE
Q 016712 242 -------------NLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ---NRQSMMFSATMPPWIRSLTNKYLKNPLT 303 (384)
Q Consensus 242 -------------~~~~l~~vViDEah~~~~~~~~~~~~~il~~l--~~---~~q~l~~SAT~~~~~~~~~~~~l~~~~~ 303 (384)
.++++.++|+|||| ++.+|...+..|++.+ ++ ++|+++||||++..+..+...++.++..
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~ 232 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK 232 (844)
T ss_pred cccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce
Confidence 26889999999999 6788999999999975 33 2799999999999988888888888877
Q ss_pred EEecCCCcccccCCeEEEEEEeccchhhHHH-----------------HHHHHhHhHHHHHHHHHhhcceEEEecCCCCh
Q 016712 304 VDLVGDSDQKLADGISLYSIATSMNMQKVEN-----------------ALFSLKQNVMQTAWLMLWLKVIIVSLCMGISH 366 (384)
Q Consensus 304 i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~-----------------l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~ 366 (384)
+.+.. .......+.+++... .+.|... ++++..+.+++++..|...++ ..+||+|++
T Consensus 233 i~V~~--~~l~a~ki~q~v~v~--~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 233 HPVLK--KRLAAKKIVKLVPPS--DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred eeccc--ccccccceEEEEecC--hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 76532 223334455543221 1222211 133455778888888887776 899999999
Q ss_pred hhhh-----chhhhhhc
Q 016712 367 KARG-----RGPFQLSE 378 (384)
Q Consensus 367 ~eR~-----~il~~F~~ 378 (384)
++|+ +++++|++
T Consensus 307 ~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLP 323 (844)
T ss_pred HHHhhHHHHHHHHHHhc
Confidence 9999 88999987
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=259.97 Aligned_cols=252 Identities=18% Similarity=0.125 Sum_probs=171.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 109 DIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.+.+.+...+| +||++|.++|+.+..+ ++++++||||||||++|++|++..+. .+.+++|++||
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---------~g~qvlilaPT 293 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------AGYQVALMAPT 293 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------cCCcEEEECCH
Confidence 34455566788 6999999999999876 36899999999999999999998873 37889999999
Q ss_pred HHHHHHHHHHHHHhCC--CCceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 183 RELAKQVEKEFHESAP--SLDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 183 ~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
++||.|+++.++++++ ++++.+++|+....+.. ..+.. .++|+||||+.+.+ .+.++++++|||||+|+
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhh
Confidence 9999999999999876 57788889987765533 33333 48999999987643 45688999999999998
Q ss_pred ccCCChHHHHHHHH-HHCC--CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 257 MLSVGFAEDVEVIL-ERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 257 ~~~~~~~~~~~~il-~~l~--~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+. ......+ .... .++++++||||++++...+......+...+...+.. ...+..++......+.-.+
T Consensus 369 fg-----~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~----r~~i~~~~~~~~~~~~~~~ 439 (630)
T TIGR00643 369 FG-----VEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG----RKPITTVLIKHDEKDIVYE 439 (630)
T ss_pred cc-----HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC----CCceEEEEeCcchHHHHHH
Confidence 43 2222223 3322 268999999999887655543222222222211110 1112222211110000000
Q ss_pred HHHHH--------------------HhHhHHHHHHHHHh--hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------------LKQNVMQTAWLMLW--LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------------~~~~~~~~~~~l~~--~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ....++.++..+.. .+..+..+||+|+.++|++++++|++|+++|+
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 00000 01233444555543 37889999999999999999999999999875
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=270.03 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=184.5
Q ss_pred HHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
++.+.+.+. |+ +|+++|..+++.++.|+|++++||||+|||. |.++++..+. ..+++++||+||++|+.
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------~~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------KKGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH--------hcCCeEEEEeccHHHHH
Confidence 444556554 77 7999999999999999999999999999996 5556554442 23788999999999999
Q ss_pred HHHHHHHHhCCC--CceEEEECCCC-----hHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 188 QVEKEFHESAPS--LDTICVYGGTP-----ISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 188 q~~~~~~~~~~~--~~~~~~~g~~~-----~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
|+++.++.++.. +.+..++|+.. ..+....+.+ +++|+|+||++|.+.+. .+...++++|||||||+|++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 999999998764 34455555543 1223334443 58999999999998876 44566799999999999996
Q ss_pred -----------CChH-HHHHHHHHHCCC------------------------CCcEEEEEccCChh-HHHHHHHhcCCCe
Q 016712 260 -----------VGFA-EDVEVILERLPQ------------------------NRQSMMFSATMPPW-IRSLTNKYLKNPL 302 (384)
Q Consensus 260 -----------~~~~-~~~~~il~~l~~------------------------~~q~l~~SAT~~~~-~~~~~~~~l~~~~ 302 (384)
.||. .++..++..++. +.|++++|||++++ +.. ..++++.
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll 292 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELL 292 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccc
Confidence 5674 677777777654 68999999999875 332 2334555
Q ss_pred EEEecCCCcccccCCeEEEEEEeccchhhHHHHHH----------HHhH---hHHHHHHHHHhhcceEEEecCCCChhhh
Q 016712 303 TVDLVGDSDQKLADGISLYSIATSMNMQKVENALF----------SLKQ---NVMQTAWLMLWLKVIIVSLCMGISHKAR 369 (384)
Q Consensus 303 ~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~----------~~~~---~~~~~~~~l~~~~~~v~~~hg~m~~~eR 369 (384)
.+.+.. ......++.+.++......+....++. +..+ .++.++..|...|+++..+||+|
T Consensus 293 ~~~v~~--~~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----- 365 (1176)
T PRK09401 293 GFEVGS--PVFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----- 365 (1176)
T ss_pred eEEecC--cccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----
Confidence 555432 234567787777765411122222221 1213 38899999999999999999999
Q ss_pred hchhhhhhcCCcccC
Q 016712 370 GRGPFQLSEMDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~~~~~V~ 384 (384)
++.+++|++|+++|+
T Consensus 366 ~~~l~~F~~G~~~VL 380 (1176)
T PRK09401 366 ERKFEKFEEGEVDVL 380 (1176)
T ss_pred HHHHHHHHCCCCCEE
Confidence 334699999999985
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=266.22 Aligned_cols=254 Identities=17% Similarity=0.172 Sum_probs=188.6
Q ss_pred HHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 108 QDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 108 ~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.++.+.+++ .|| +|+++|.++++.+++|+|+++++|||+|||++++++++... ..+.++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHH
Confidence 356667776 799 69999999999999999999999999999997666655432 2367899999999999
Q ss_pred HHHHHHHHHhCC----CCceEEEECCCChHHHHH---HHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 187 KQVEKEFHESAP----SLDTICVYGGTPISHQMR---ALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 187 ~q~~~~~~~~~~----~~~~~~~~g~~~~~~~~~---~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
.|+.+.++.++. ++.+..++|+.+..++.. .+..+ ++|+|+||++|.+.+... . ..+++++||||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecc
Confidence 999999999764 345566788887665533 34444 899999999998876542 2 2679999999999998
Q ss_pred C-----------CChHHHHHH----HHH----------------------HCCCCCc-EEEEEccCChhHHHHHHHhcCC
Q 016712 259 S-----------VGFAEDVEV----ILE----------------------RLPQNRQ-SMMFSATMPPWIRSLTNKYLKN 300 (384)
Q Consensus 259 ~-----------~~~~~~~~~----il~----------------------~l~~~~q-~l~~SAT~~~~~~~~~~~~l~~ 300 (384)
+ .||.+++.. ++. .++...| ++++|||.+++.. ....+++
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhc
Confidence 6 478877754 332 2344555 6779999987522 2234567
Q ss_pred CeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHH-------------h---HhHHHHHHHHHhhcceEEEecCCC
Q 016712 301 PLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL-------------K---QNVMQTAWLMLWLKVIIVSLCMGI 364 (384)
Q Consensus 301 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~-------------~---~~~~~~~~~l~~~~~~v~~~hg~m 364 (384)
+..+.+. .+.....++.+.++..... .+ ..++..+ . +.+++++..|...|+++..+||+
T Consensus 292 ~l~f~v~--~~~~~lr~i~~~yi~~~~~-~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~- 366 (1638)
T PRK14701 292 LLGFEVG--SGRSALRNIVDVYLNPEKI-IK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK- 366 (1638)
T ss_pred CeEEEec--CCCCCCCCcEEEEEECCHH-HH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-
Confidence 7777663 3345677788887765422 12 2222211 1 23578899999999999999995
Q ss_pred ChhhhhchhhhhhcCCcccC
Q 016712 365 SHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 365 ~~~eR~~il~~F~~~~~~V~ 384 (384)
|.+++++|++|+++|+
T Consensus 367 ----R~~~l~~F~~G~~~VL 382 (1638)
T PRK14701 367 ----NKKGFDLFEEGEIDYL 382 (1638)
T ss_pred ----HHHHHHHHHcCCCCEE
Confidence 9999999999999985
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=236.06 Aligned_cols=271 Identities=19% Similarity=0.207 Sum_probs=208.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
+.....++++++.+.+-|+..|++.+.|.|..|+.. +++|.|.+++++|+||||++.-++-+..++. .|.+
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~K 263 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKK 263 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCe
Confidence 346678999999999999999999999999999987 7899999999999999999999999988864 4788
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHH----HHHhcCCCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM----RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~----~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
.|||+|..+||+|-++.|++.+.. +++.+-.|........ ......+||||||.+-+.+++..+ -.+.+++.|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 999999999999999999997764 4444444443222221 111224899999999997777766 678999999
Q ss_pred EEeCcccccCCChHHHHHHHHH---HCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec
Q 016712 250 VLDEADQMLSVGFAEDVEVILE---RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~---~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
||||+|.+-+...+..+.-++. .+-+..|+|.+|||.-+. .++++.+--..+..+-.|. + +..+.+.+.
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPV---p----lErHlvf~~ 414 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPV---P----LERHLVFAR 414 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCC---C----hhHeeeeec
Confidence 9999998887656655555544 455789999999998765 5666666544444332111 1 222444555
Q ss_pred cchhhHHHHHH----------------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 327 MNMQKVENALF----------------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 327 ~~~~k~~~l~~----------------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+..+|.+.+.. +.++.+..++..|...|+++.+||+||+..+|+.+..+|.+++++++
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 55666654432 22366778888898889999999999999999999999999998863
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=260.08 Aligned_cols=256 Identities=19% Similarity=0.246 Sum_probs=184.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.++.+.+.+....+|+++|+.+++.++.|+|++++||||+|||. |.+|+...+.. .+++++||+||++||.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHH
Confidence 45666676644447999999999999999999999999999997 66777665532 3688999999999999
Q ss_pred HHHHHHHHhCCCC--ce---EEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 188 QVEKEFHESAPSL--DT---ICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 188 q~~~~~~~~~~~~--~~---~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
|+++.++.++... .+ .+++|+.+..++. ..+.+ +++|+|+||++|.+.+..-. . +++++||||||+|+
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhh
Confidence 9999999987533 32 2466887765543 23343 49999999999988776421 2 89999999999999
Q ss_pred C-----------CChHHH-HHHHH----------------------HHCCCCCc--EEEEEcc-CChhHHHHHHHhcCCC
Q 016712 259 S-----------VGFAED-VEVIL----------------------ERLPQNRQ--SMMFSAT-MPPWIRSLTNKYLKNP 301 (384)
Q Consensus 259 ~-----------~~~~~~-~~~il----------------------~~l~~~~q--~l~~SAT-~~~~~~~~~~~~l~~~ 301 (384)
+ .||..+ ++.++ +.++.+.| ++++||| .|..+.. .+++++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 8 577653 44433 23445555 5678999 5655432 345566
Q ss_pred eEEEecCCCcccccCCeEEEEEEeccchhhHHHHHH----------HHh---HhHHHHHHHHHhhcceEEEecCCCChhh
Q 016712 302 LTVDLVGDSDQKLADGISLYSIATSMNMQKVENALF----------SLK---QNVMQTAWLMLWLKVIIVSLCMGISHKA 368 (384)
Q Consensus 302 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~----------~~~---~~~~~~~~~l~~~~~~v~~~hg~m~~~e 368 (384)
..+.+.. ......++.+.++.......+...++. +.. +.++.++..|...|+++..+||+|++
T Consensus 290 l~~~v~~--~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 290 LGFEVGG--GSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred cceEecC--ccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 6666532 234567787777654421222222221 222 66888999999999999999999973
Q ss_pred hhchhhhhhcCCcccC
Q 016712 369 RGRGPFQLSEMDVSIY 384 (384)
Q Consensus 369 R~~il~~F~~~~~~V~ 384 (384)
+++++|++|+++|+
T Consensus 366 --~~l~~Fr~G~~~vL 379 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVL 379 (1171)
T ss_pred --HHHHHHHcCCCCEE
Confidence 79999999999985
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=250.91 Aligned_cols=266 Identities=21% Similarity=0.291 Sum_probs=196.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
....+..+|.+.|+..++.||.+|+..+.+|+|+||+++||||||++|++|++++++. +...++|||.||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnAL 127 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNAL 127 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhhh
Confidence 3455688899999999999999999999999999999999999999999999999987 344589999999999
Q ss_pred HHHHHHHHHHhCCC----CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc----CCCCCCccEEEEeCcccc
Q 016712 186 AKQVEKEFHESAPS----LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 186 a~q~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~----~~~~~~l~~vViDEah~~ 257 (384)
|+++.++|.++... +.+..++|+....+....+.+.++|+++||++|...+..+ ...++++++||+||+|.+
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 99999999987543 4455566766666666777888999999999998866443 335778999999999987
Q ss_pred cCCChHHHHHHHHHHC-------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec----
Q 016712 258 LSVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS---- 326 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~---- 326 (384)
-.. |+.++..+++++ +.+.|+|+.|||+.+. .+.+..+........+. +.........+.....
T Consensus 208 rGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~ 282 (851)
T COG1205 208 RGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRE 282 (851)
T ss_pred ccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchh
Confidence 665 888887777765 3478999999998766 55666666655544332 2233444444444333
Q ss_pred -------cchhhHHHHHHHH-------------hHhHHHHH----HHHHhhc----ceEEEecCCCChhhhhchhhhhhc
Q 016712 327 -------MNMQKVENALFSL-------------KQNVMQTA----WLMLWLK----VIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 327 -------~~~~k~~~l~~~~-------------~~~~~~~~----~~l~~~~----~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
........+.... .+.++... ..+...+ ..+..++|+|..++|+++..+|++
T Consensus 283 ~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~ 362 (851)
T COG1205 283 LAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE 362 (851)
T ss_pred hhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc
Confidence 1111111111111 12333332 2333334 679999999999999999999999
Q ss_pred CCccc
Q 016712 379 MDVSI 383 (384)
Q Consensus 379 ~~~~V 383 (384)
|++.+
T Consensus 363 g~~~~ 367 (851)
T COG1205 363 GELLG 367 (851)
T ss_pred CCccE
Confidence 99875
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=240.04 Aligned_cols=256 Identities=19% Similarity=0.245 Sum_probs=194.2
Q ss_pred CCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 103 ~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.++.+..+++.+.+ ..| ++|..|++++..|..+ ++.+++|+.|||||++++++++..+. .|.|
T Consensus 244 ~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q 313 (677)
T COG1200 244 PLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQ 313 (677)
T ss_pred CCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------cCCe
Confidence 34456666666654 577 5999999999999876 58999999999999999999999984 4899
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHH---HHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ---MRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~---~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
+...+||.-||.|+++.+.++++ ++++..++|....... ...+.+| .||+||| +.+.+..+.|+++++|
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLV 388 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLV 388 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEE
Confidence 99999999999999999999886 5677778887665443 3444555 9999999 8888889999999999
Q ss_pred EEeCcccccCCChHHHHHHHHHHCCC-CCcEEEEEccCChhHHHHHHHhcCC------------CeEEEecCCCc-----
Q 016712 250 VLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSATMPPWIRSLTNKYLKN------------PLTVDLVGDSD----- 311 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~~SAT~~~~~~~~~~~~l~~------------~~~i~~~~~~~----- 311 (384)
||||-|+ |+..-...+..-.. .+.+++|||||.|++..+..-.-.+ |+...+.+..+
T Consensus 389 IiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~ 463 (677)
T COG1200 389 IIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVY 463 (677)
T ss_pred EEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHH
Confidence 9999999 99988888888777 7899999999999988776544333 33333322221
Q ss_pred ----ccccCCeEEEEEEeccc-hhhHHHHHHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 312 ----QKLADGISLYSIATSMN-MQKVENALFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 312 ----~~~~~~i~~~~~~~~~~-~~k~~~l~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+..+-+.|+++.--+ .++.+ .+.+...+..+... +.++..+||.|+.+|++++|++|++|++||+
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~------l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLE------LQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccch------hhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 12333333443332211 22222 23444555555432 7789999999999999999999999999985
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=207.00 Aligned_cols=163 Identities=32% Similarity=0.563 Sum_probs=140.2
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC--C
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--L 200 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~ 200 (384)
||+|.++++.+.+|+++++.+|||+|||++|.+|++..+.+ ....+++|++|+++|++|+.+.+..++.. +
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-------GKDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-------CCCceEEEEeeccccccccccccccccccccc
Confidence 79999999999999999999999999999999999988865 22348999999999999999999998864 6
Q ss_pred ceEEEECCCChH-HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC--CCC
Q 016712 201 DTICVYGGTPIS-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNR 277 (384)
Q Consensus 201 ~~~~~~g~~~~~-~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~--~~~ 277 (384)
.+..++++.... .....+..+++|+|+||+++.+.+..+..++.++++|||||+|.+..+++...+..+++.+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 778888887755 44444556799999999999999988666778899999999999999888999999999874 369
Q ss_pred cEEEEEccCChhHHH
Q 016712 278 QSMMFSATMPPWIRS 292 (384)
Q Consensus 278 q~l~~SAT~~~~~~~ 292 (384)
|++++|||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999976654
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=257.29 Aligned_cols=238 Identities=18% Similarity=0.184 Sum_probs=165.8
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhhhc----cCCCCCCEEEEEecCHHHHHHHHHHHHHh--------------CCCCce
Q 016712 141 GRARTGTGKTLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHES--------------APSLDT 202 (384)
Q Consensus 141 i~a~TGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~~~lvl~Pt~~La~q~~~~~~~~--------------~~~~~~ 202 (384)
|++|||||||++|.+|++..+...... .....+.++|||+|+++|++|+++.++.. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998753211 11124689999999999999999988641 125677
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeCcccccCCChHHH----HHHHHHHCCCCC
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAED----VEVILERLPQNR 277 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDEah~~~~~~~~~~----~~~il~~l~~~~ 277 (384)
.+.+|+.+..+..+.+.+.+||+|+||++|..++.++ ...++++++|||||+|.+.+..++.+ ++.+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8889999888877777788999999999998887654 34689999999999999997655544 444445556789
Q ss_pred cEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEecc-c--------------------hh----
Q 016712 278 QSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSM-N--------------------MQ---- 330 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~--------------------~~---- 330 (384)
|+|++|||+++. .++. .|+. +++.|...+... ...+..+ +.... . .+
T Consensus 161 QrIgLSATI~n~-eevA-~~L~g~~pv~Iv~~~~~r---~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVA-AFLGGDRPVTVVNPPAMR---HPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred eEEEEEeeCCCH-HHHH-HHhcCCCCEEEECCCCCc---ccceEEE-EecCchhhccccccccccccchhhhhhhhHHHH
Confidence 999999999874 5555 4543 355553221111 0111111 11000 0 00
Q ss_pred ----------hHHHHHHHHhHhHHHHHHHHHhhc---------------------------------ceEEEecCCCChh
Q 016712 331 ----------KVENALFSLKQNVMQTAWLMLWLK---------------------------------VIIVSLCMGISHK 367 (384)
Q Consensus 331 ----------k~~~l~~~~~~~~~~~~~~l~~~~---------------------------------~~v~~~hg~m~~~ 367 (384)
+.-+++.+.++.+++++..|+... ..+.++||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 000113344566777777665431 2367899999999
Q ss_pred hhhchhhhhhcCCcccC
Q 016712 368 ARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 368 eR~~il~~F~~~~~~V~ 384 (384)
+|+.++++|++|+++|+
T Consensus 315 eR~~IE~~fK~G~LrvL 331 (1490)
T PRK09751 315 QRAITEQALKSGELRCV 331 (1490)
T ss_pred HHHHHHHHHHhCCceEE
Confidence 99999999999998874
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=234.85 Aligned_cols=255 Identities=19% Similarity=0.244 Sum_probs=194.5
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 110 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
+...|.+ +||..+++-|.++|..+++|+|+++..|||+||++||.+|++-. .+.+|||+|..+|.++
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~D 72 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHH
Confidence 3345666 59999999999999999999999999999999999999999853 3469999999999999
Q ss_pred HHHHHHHhCCCCceEEEECCCChHHHHH---HHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC--h
Q 016712 189 VEKEFHESAPSLDTICVYGGTPISHQMR---ALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--F 262 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~--~ 262 (384)
+.+.++..+ +.+.++.+..+..+... .+..+ .++++-+|++|..--..+.+.-..+.++|||||||+++|| |
T Consensus 73 QV~~l~~~G--i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 73 QVDQLEAAG--IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred HHHHHHHcC--ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCcc
Confidence 999999987 67777777765554433 33333 7999999999866544444445678999999999999998 9
Q ss_pred HHHHHHHHH---HCCCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH--
Q 016712 263 AEDVEVILE---RLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA-- 335 (384)
Q Consensus 263 ~~~~~~il~---~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l-- 335 (384)
++++..+-. .++ +.+++.+|||.++.+...+...+. ++..+...-+ .+++............+...+
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-----RpNi~~~v~~~~~~~~q~~fi~~ 224 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD-----RPNLALKVVEKGEPSDQLAFLAT 224 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-----CchhhhhhhhcccHHHHHHHHHh
Confidence 888777644 344 899999999999999887776664 4444433211 222221111111112222222
Q ss_pred -----------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 -----------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 -----------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+..+..++++++.|...|+++..|||||+.++|+.+.++|.+++++|+
T Consensus 225 ~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ii 284 (590)
T COG0514 225 VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVM 284 (590)
T ss_pred hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEE
Confidence 2345588999999999999999999999999999999999999999874
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=237.73 Aligned_cols=187 Identities=21% Similarity=0.301 Sum_probs=153.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 104 LDISQDIVAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 104 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
..+++.+...+...|+..+++.|+.++.... +|+|+|+++|||||||+++++.++..+.+ .+.+++||+|+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPl 85 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPL 85 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeCh
Confidence 3467888888888899889999999888754 55999999999999999999999999865 25789999999
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC
Q 016712 183 RELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (384)
Q Consensus 183 ~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~ 261 (384)
++||+|.+++|+++- -++++...+|+...... ...+++|+|+||+++...+++...+..++++|||||+|.+.+..
T Consensus 86 kALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFSRLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhhhHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 999999999999322 16888899998765442 22358999999999988888887789999999999999888887
Q ss_pred hHHHHHHHHHHCCC---CCcEEEEEccCChhHHHHHHHhcCCCe
Q 016712 262 FAEDVEVILERLPQ---NRQSMMFSATMPPWIRSLTNKYLKNPL 302 (384)
Q Consensus 262 ~~~~~~~il~~l~~---~~q~l~~SAT~~~~~~~~~~~~l~~~~ 302 (384)
.++.++.++.+++. .+|++++|||+|+. .+++...-.+++
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~ 205 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLV 205 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCccc
Confidence 88888888877654 47999999999875 445444433433
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=217.97 Aligned_cols=243 Identities=12% Similarity=0.043 Sum_probs=159.2
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+.. ....++|||+||++|+.|+.+.+++++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 347999999999999999999999999999999764432 22222 1234899999999999999999998763
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
...+..+.+|.... .+.+|+|+||+++..... ..++++++|||||||++... .+..++..+++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~ 249 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNC 249 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhcc
Confidence 23344455554332 247999999999875432 24688999999999998764 456677777777
Q ss_pred CcEEEEEccCChhHHHHHH-HhcCCCeEEEec-------------------CCCcccccCCeE--EE---EEEeccchhh
Q 016712 277 RQSMMFSATMPPWIRSLTN-KYLKNPLTVDLV-------------------GDSDQKLADGIS--LY---SIATSMNMQK 331 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~~~~~-~~l~~~~~i~~~-------------------~~~~~~~~~~i~--~~---~~~~~~~~~k 331 (384)
.++++||||+++....... ..+-.++...+. ..........+. .+ +......+.+
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 8999999999754322111 111112211110 000000000000 00 0000001111
Q ss_pred HHHHH----------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 332 VENAL----------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 332 ~~~l~----------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
...+. +...++++.++..|...|..+..+||+|+.++|+++++.|++|+..|
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~v 397 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGII 397 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeE
Confidence 11111 11226677888888888999999999999999999999999988654
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=217.18 Aligned_cols=234 Identities=17% Similarity=0.160 Sum_probs=168.1
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CCC--ce
Q 016712 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSL--DT 202 (384)
Q Consensus 126 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~--~~ 202 (384)
-.+.+..+..+.++|++|+||||||..|.+++++.. ..+++++|+.|++++|.|+++++.+.. ..+ .+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~---------~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP---------GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh---------ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 345566677788999999999999999999998765 135689999999999999999986543 222 23
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc-cccCCChHHH-HHHHHHHCCCCCcEE
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQSM 280 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah-~~~~~~~~~~-~~~il~~l~~~~q~l 280 (384)
....++.. ....+.+|+|+|||.|++.+... ..++++++|||||+| ++++.++.-. +..+...++++.|+|
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 33333221 22335799999999999988764 578999999999999 5777666543 345666788899999
Q ss_pred EEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH-----HHHH-------------HHhHh
Q 016712 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE-----NALF-------------SLKQN 342 (384)
Q Consensus 281 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l~~-------------~~~~~ 342 (384)
+||||++... ...|+.++..|...+.. ..+.+++...... .+.. .+.. ...++
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr~-----~pVe~~y~~~~~~-~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 221 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGRS-----FPVEIRYLPLRGD-QRLEDAVSRAVEHALASETGSILVFLPGQAE 221 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCcc-----eeeeeEEeecchh-hhHHHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 9999998753 46677776666654321 1244555443221 1211 1111 11256
Q ss_pred HHHHHHHHHh---hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 343 VMQTAWLMLW---LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 343 ~~~~~~~l~~---~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+++..|.. .++.+..+||+|+.++|.++++.|++|+.+|+
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVl 266 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVV 266 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEE
Confidence 6677777765 37899999999999999999999999988764
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=205.99 Aligned_cols=235 Identities=16% Similarity=0.104 Sum_probs=152.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH-----
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS----- 212 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~----- 212 (384)
++++++|||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhcc
Confidence 58999999999999999999987643 34678999999999999999999998642 344444432210
Q ss_pred -------HHHHHH------hcCCCEEEECchhHHHHHHccC----CCCC--CccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 213 -------HQMRAL------DYGVDAVVGTPGRVIDLIKRNA----LNLS--EVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 213 -------~~~~~~------~~~~~IlV~Tp~~l~~~l~~~~----~~~~--~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
...... ....+|+|+||+++...+..+. ..+. ..++|||||+|.+.+.++.. +..+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 000011 1136899999999988776521 1111 23789999999998875443 55555555
Q ss_pred C-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEE-eccchhh---HHHH------------H
Q 016712 274 P-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMNMQK---VENA------------L 336 (384)
Q Consensus 274 ~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~k---~~~l------------~ 336 (384)
. .+.|+++||||+|+.+.++...+...+......... ......+.+.. ......+ ...+ +
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE---ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc---ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 4 479999999999987777766654332211111000 00001111111 1111111 1111 2
Q ss_pred HHHhHhHHHHHHHHHhhcc--eEEEecCCCChhhhhch----hhhhhcCCcccC
Q 016712 337 FSLKQNVMQTAWLMLWLKV--IIVSLCMGISHKARGRG----PFQLSEMDVSIY 384 (384)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~--~v~~~hg~m~~~eR~~i----l~~F~~~~~~V~ 384 (384)
++..+.++.++..|...+. .+..+||+|++.+|+++ +++|++|+..|+
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~il 282 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVI 282 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEE
Confidence 2344777788888877655 59999999999999774 899999987653
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=212.93 Aligned_cols=242 Identities=15% Similarity=0.099 Sum_probs=167.8
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHH---------HHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLA---------FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~---------~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
..+|+++++.+++|+++|++|+||||||.+ |++|.+..+.... ....+++++|++||++||.|+...+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHH
Confidence 458999999999999999999999999997 4455555442111 0123568999999999999999998
Q ss_pred HHhC-----CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHH
Q 016712 194 HESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (384)
Q Consensus 194 ~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~ 268 (384)
.+.. .+.++.+.+|+... ........+.+|+|+|++.. ...++++++|||||||.+...+ ..+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHH
Confidence 7643 24567788888763 22223333679999997521 1247889999999999987764 44455
Q ss_pred HHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEecc---------chhh---HHHH
Q 016712 269 ILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM---------NMQK---VENA 335 (384)
Q Consensus 269 il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---------~~~k---~~~l 335 (384)
+++.+. ..+|+++||||++.++..+ ..++.++..|.+.+. ....+.++++.... ...+ ...+
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L 387 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTAL 387 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHH
Confidence 555443 3469999999999888776 688899988887432 23445555543221 0111 1111
Q ss_pred H-------------HHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhh-hcCCcccC
Q 016712 336 L-------------FSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQL-SEMDVSIY 384 (384)
Q Consensus 336 ~-------------~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F-~~~~~~V~ 384 (384)
. ....++++.+...|... ++.+..+||+|++. ++++++| ++|+.+|+
T Consensus 388 ~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kIL 450 (675)
T PHA02653 388 KKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSII 450 (675)
T ss_pred HHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEE
Confidence 1 11225666777777766 78999999999974 5778888 68887763
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=215.49 Aligned_cols=234 Identities=16% Similarity=0.155 Sum_probs=166.6
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CC--Cce
Q 016712 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PS--LDT 202 (384)
Q Consensus 126 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~--~~~ 202 (384)
-.+.+..+.++++++++|+||||||.+|.+++++.. ..+++++|+.||+++|.|+++.+.+.. .. ..+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~---------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG---------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC---------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 345566777889999999999999999999988653 123589999999999999999986543 22 234
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCCh-HHHHHHHHHHCCCCCcEE
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGF-AEDVEVILERLPQNRQSM 280 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~~-~~~~~~il~~l~~~~q~l 280 (384)
....++... .....+|+|+|||+|.+++.. ...++++++|||||+|. .++..+ ...+..+++.++++.|++
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 444444321 122468999999999998875 45799999999999996 444433 223455667788899999
Q ss_pred EEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHH-----HH-------------HHHhHh
Q 016712 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN-----AL-------------FSLKQN 342 (384)
Q Consensus 281 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~-----l~-------------~~~~~~ 342 (384)
+||||++.. ....|+.++..|...+. ...+.+++..... ..+.+. +. ....++
T Consensus 154 lmSATl~~~---~l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 224 (812)
T PRK11664 154 IMSATLDND---RLQQLLPDAPVIVSEGR-----SFPVERRYQPLPA-HQRFDEAVARATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred EEecCCCHH---HHHHhcCCCCEEEecCc-----cccceEEeccCch-hhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHH
Confidence 999999865 23567777666665432 1224555544332 222221 11 112256
Q ss_pred HHHHHHHHHh---hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 343 VMQTAWLMLW---LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 343 ~~~~~~~l~~---~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++.++..|.. .++.+..+||+|+.++|+++++.|++|+.+|+
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVl 269 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVV 269 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEE
Confidence 7788888876 57889999999999999999999999988764
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=211.30 Aligned_cols=168 Identities=23% Similarity=0.296 Sum_probs=135.7
Q ss_pred cCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhh-ccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNE-KHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.+|.+++.+|.+++|.+.+. .|+|||||||+|||.+|++.+++.+.+... .....++.+++||+|+++||.++.+.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 47788999999999998754 699999999999999999999999875221 1122357789999999999999999999
Q ss_pred HhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC----CCCCCccEEEEeCcccccCCChHHHHHH
Q 016712 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA----LNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (384)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~----~~~~~l~~vViDEah~~~~~~~~~~~~~ 268 (384)
+.+. ++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++|||||+|.+-+. .|+.++.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 9876 78888899987765443 23489999999998 4444332 24678999999999976665 8889888
Q ss_pred HHHHCC-------CCCcEEEEEccCChh
Q 016712 269 ILERLP-------QNRQSMMFSATMPPW 289 (384)
Q Consensus 269 il~~l~-------~~~q~l~~SAT~~~~ 289 (384)
|+.++. ...+++++|||+|+-
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~ 288 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY 288 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH
Confidence 887753 367899999999975
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=196.11 Aligned_cols=210 Identities=25% Similarity=0.380 Sum_probs=155.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHh---C--CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHES---A--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~---~--~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
+.++++|+-|+++|++|.++.++++ . +.++...+.||.-...+...+.+|.+|+||||+++.+.+..+.+.+.++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 4578999999999999999966654 3 2345557788888899999999999999999999999999999999999
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCC------CCcEEEEEccCCh-hHHHHHHHhcCCCeEEEecCCCcccccCCeE
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ------NRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~------~~q~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~ 319 (384)
+++|+||++.++..++...+..+...+|. ..|.+++|||+.- ++..+.++.+.-|..+.+.++. .+.+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD--~vpetvH 442 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED--LVPETVH 442 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc--ccchhhc
Confidence 99999999999999988888888777763 5799999999864 5677888888888888875442 2222222
Q ss_pred EEEEEeccc-hh-------------------------------------hHHHHHHHHh--------------HhHHHHH
Q 016712 320 LYSIATSMN-MQ-------------------------------------KVENALFSLK--------------QNVMQTA 347 (384)
Q Consensus 320 ~~~~~~~~~-~~-------------------------------------k~~~l~~~~~--------------~~~~~~~ 347 (384)
+....+... +. |.+.-+..++ +.+..+.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 222111100 00 0111111111 3334555
Q ss_pred HHHHhh---cceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 348 WLMLWL---KVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 348 ~~l~~~---~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.++.. .+.|.++||+..+.||++.++.|+.+++..
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkf 561 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKF 561 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEE
Confidence 555554 468999999999999999999999998753
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=188.27 Aligned_cols=234 Identities=18% Similarity=0.138 Sum_probs=153.0
Q ss_pred HHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC----
Q 016712 125 IQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---- 198 (384)
Q Consensus 125 ~Q~~~i~~i~~g~d--~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~---- 198 (384)
+|.++++.+.++.+ +++++|||+|||++|++|++.. +.+++|++|+++|++|+++.+++++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 59999999998874 7889999999999999998842 34589999999999999999888752
Q ss_pred --CCceEEEECCCChH--HH-----------------HH-HHhcCCCEEEECchhHHHHHHccCC--------CCCCccE
Q 016712 199 --SLDTICVYGGTPIS--HQ-----------------MR-ALDYGVDAVVGTPGRVIDLIKRNAL--------NLSEVQF 248 (384)
Q Consensus 199 --~~~~~~~~g~~~~~--~~-----------------~~-~~~~~~~IlV~Tp~~l~~~l~~~~~--------~~~~l~~ 248 (384)
+..+..+.|..... .. .. .....++|+++||+.+..++..... .+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 33344444432111 00 00 1123588999999999766543211 2578999
Q ss_pred EEEeCcccccCCC-----hHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHh--cCCCeEEEecCC----Cc------
Q 016712 249 VVLDEADQMLSVG-----FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGD----SD------ 311 (384)
Q Consensus 249 vViDEah~~~~~~-----~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~--l~~~~~i~~~~~----~~------ 311 (384)
|||||+|.+..++ +......+++......+++++|||+++.+...+... +..+..+ +.+. .+
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEA 227 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhc
Confidence 9999999987543 122333444444446799999999999877777654 4444322 2222 00
Q ss_pred -------ccccCCeEEEEEEeccchhhHHHH---------------------HHHHhHhHHHHHHHHHhhc--ceEEEec
Q 016712 312 -------QKLADGISLYSIATSMNMQKVENA---------------------LFSLKQNVMQTAWLMLWLK--VIIVSLC 361 (384)
Q Consensus 312 -------~~~~~~i~~~~~~~~~~~~k~~~l---------------------~~~~~~~~~~~~~~l~~~~--~~v~~~h 361 (384)
.++...+.+.+.... ..+.+.+ +++..+.+++++..|...+ ..+..+|
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~ 305 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIPAP--DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRIT 305 (357)
T ss_pred cccccccceeccceEEEEEeCC--chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeee
Confidence 012234444444311 1111111 2223367778888888754 5789999
Q ss_pred CCCChhhhhchh
Q 016712 362 MGISHKARGRGP 373 (384)
Q Consensus 362 g~m~~~eR~~il 373 (384)
|.|++.+|++++
T Consensus 306 g~~~~~~R~~~~ 317 (357)
T TIGR03158 306 GFAPKKDRERAM 317 (357)
T ss_pred cCCCHHHHHHhc
Confidence 999999998764
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=200.83 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=122.6
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g---~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+|++|+++++.+.++ +++++.|+||||||.+|+.++...+. .|.++|||+|+++|+.|+++.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999999874 78999999999999999888777663 36789999999999999999999977
Q ss_pred CCCceEEEECCCChHHHHHHH---h-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-----h-HHHHH
Q 016712 198 PSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVE 267 (384)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~---~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-----~-~~~~~ 267 (384)
+..+..++|+.+..+....+ . ..++|+|||++.+. ..++++++|||||+|...-.+ | ..++.
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 46788899988766554433 2 35899999998763 457899999999999765321 1 12222
Q ss_pred HHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 268 VILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+++....+.|++++|||++.+....+.
T Consensus 287 -~~ra~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 287 -VVRAKLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred -HHHhhccCCCEEEEcCCCCHHHHHHHh
Confidence 333445689999999998877655543
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=193.75 Aligned_cols=262 Identities=16% Similarity=0.158 Sum_probs=182.3
Q ss_pred HHHHHHHHc-CCCCC-cHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 109 DIVAALARR-GISKL-FPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 109 ~l~~~l~~~-g~~~~-~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+..+|++. |+.++ ++.|+.|+..+.++ +|+.+++|||+||++||.+|.+.+ +..+||+.|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 455677763 66554 89999999987665 699999999999999999999865 4489999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---h---cCCCEEEECchhHHHHHH----ccCCCCCCccEEEEeCcc
Q 016712 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D---YGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~IlV~Tp~~l~~~l~----~~~~~~~~l~~vViDEah 255 (384)
+.++.+.+..+- +++.-+.+..+..+..+.+ . ....+++-||+....-.. +....-.-+.++||||||
T Consensus 74 IkDQiDHL~~LK--Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 74 IKDQIDHLKRLK--VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHHHHHhcC--CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhh
Confidence 999999998865 3444455554444433333 2 246899999997654332 223334568999999999
Q ss_pred cccCCC--hHHHHHHHHHH--CCCCCcEEEEEccCChhHHHHHHH--hcCCCeEEEecCCCcc-cccCCeEEEEEE----
Q 016712 256 QMLSVG--FAEDVEVILER--LPQNRQSMMFSATMPPWIRSLTNK--YLKNPLTVDLVGDSDQ-KLADGISLYSIA---- 324 (384)
Q Consensus 256 ~~~~~~--~~~~~~~il~~--l~~~~q~l~~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~-~~~~~i~~~~~~---- 324 (384)
++..|| |.+++-.+-.. .-+++..+.+|||..+.+++.+-. -+++|+.|--.|.-+. ...+..-...|.
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLT 231 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhH
Confidence 999998 88877665332 235789999999999998876543 4567876532221110 000000000000
Q ss_pred --------eccchh------h----HHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 325 --------TSMNMQ------K----VENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 325 --------~~~~~~------k----~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+-...+ | .-.+.+..++.+++++..+...|+.+..||+||...||.++-++|-++++.|+
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 000000 0 00112335588999999999999999999999999999999999999999874
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=184.17 Aligned_cols=269 Identities=16% Similarity=0.171 Sum_probs=195.7
Q ss_pred CCccCCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.-+++|++....+.|++. ..++++|.|..+|+..+.|.|.++..|||.||++||.+|++.. .+.+|
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~al 138 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFAL 138 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceE
Confidence 3445678888888888874 6788999999999999999999999999999999999999854 56799
Q ss_pred EEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH---HHHH---hcCCCEEEECchhHHHHH-----HccCCCCCCc
Q 016712 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ---MRAL---DYGVDAVVGTPGRVIDLI-----KRNALNLSEV 246 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~---~~~~~IlV~Tp~~l~~~l-----~~~~~~~~~l 246 (384)
||+|...|++++.-.+++++- ....+....+..+. ...+ .....+++.||+++...- ....+....+
T Consensus 139 vi~plislmedqil~lkqlgi--~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 139 VICPLISLMEDQILQLKQLGI--DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred eechhHHHHHHHHHHHHHhCc--chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 999999999999999999873 33334333332221 1111 123579999999986432 1234456778
Q ss_pred cEEEEeCcccccCCC--hHHHHHH--HHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEE
Q 016712 247 QFVVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (384)
Q Consensus 247 ~~vViDEah~~~~~~--~~~~~~~--il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~ 322 (384)
.++.|||+|+...|| |++++.. ++++--++..+|+++||.++.+...++..+.--.-+.+... -...++...+
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~yev 293 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLKYEV 293 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc---cCCCCceeEe
Confidence 999999999999987 7777654 46666678999999999999888877766542111111101 1222333333
Q ss_pred EEeccchhh-HHHHHH---------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 323 IATSMNMQK-VENALF---------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 323 ~~~~~~~~k-~~~l~~---------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+..++. .+.+.. ...+..++++..|..+|+.+..||+.|.+++|.-+.+.|-.|+|.|+
T Consensus 294 ~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 294 RQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred eeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEE
Confidence 333333222 222222 23378889999999999999999999999999999999999999874
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=211.06 Aligned_cols=256 Identities=15% Similarity=0.154 Sum_probs=189.8
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
+....|.. .|...+++-|.++|..++.|+|+++.+|||+||++||.+|++-. ++.+|||.|..+|++
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 34444444 69999999999999999999999999999999999999998742 558999999999999
Q ss_pred HHHHHHHHhCCCCceEEEECCCChHHH---HHHHhc---CCCEEEECchhHHHHH--HccCCCCCC---ccEEEEeCccc
Q 016712 188 QVEKEFHESAPSLDTICVYGGTPISHQ---MRALDY---GVDAVVGTPGRVIDLI--KRNALNLSE---VQFVVLDEADQ 256 (384)
Q Consensus 188 q~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~---~~~IlV~Tp~~l~~~l--~~~~~~~~~---l~~vViDEah~ 256 (384)
++...+... +++...+.++....++ .+.+.. .++|+..||+++...- ......+.. +.++||||||+
T Consensus 319 DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 319 DQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 888888443 4777778877776533 333333 3799999999886432 111223334 89999999999
Q ss_pred ccCCC--hHHHHHHHHHHC--CCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 257 MLSVG--FAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 257 ~~~~~--~~~~~~~il~~l--~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
+..|| |++.+..+-... .+.+++|++|||.+.+++..+-.-++ ++..+.- .....++...+.... ...
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-----sfnR~NL~yeV~~k~-~~~ 470 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS-----SFNRPNLKYEVSPKT-DKD 470 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc-----cCCCCCceEEEEecc-Ccc
Confidence 99998 888877663322 23589999999999999887766554 5554432 133344433332222 111
Q ss_pred hHHHH---------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENA---------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l---------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
....+ .+..+..+++++..|+..|+.++.||+||++.+|+.|..+|-.++++|+
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~Vi 539 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVI 539 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEE
Confidence 11111 2234488999999999999999999999999999999999999999874
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=170.98 Aligned_cols=183 Identities=42% Similarity=0.694 Sum_probs=153.7
Q ss_pred cCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.++..++++|.++++.+..+ +++++.++||+|||.++..+++..+.. .....++|++|+..++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 46778999999999999998 999999999999999999998888743 2246799999999999999999998
Q ss_pred hCCCC--ceEEEECCCChHHHHHHHhcCC-CEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 196 SAPSL--DTICVYGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 196 ~~~~~--~~~~~~g~~~~~~~~~~~~~~~-~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
.+... ......++.........+..+. +|+++|++.+.+.+.........++++||||+|.+....+...+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 87542 3344555555455555555555 99999999999999887777788999999999998875688889999998
Q ss_pred CCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 273 l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
+++..+++++|||+++........+..+.+.+..
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 8889999999999999999999999887777764
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=197.82 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=128.0
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+++++|.+++..++.+ |.++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.+++++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 346899999999988876 9999999999999999998887762 2467899999999999999999998763
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
...+..++|+....+. ..+..+.+|+|+||+.+...+..+.+.+.++++|||||||++........+........+.
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 2366677777665543 3344457999999999988888888889999999999999987654334444444444556
Q ss_pred CcEEEEEccCChh
Q 016712 277 RQSMMFSATMPPW 289 (384)
Q Consensus 277 ~q~l~~SAT~~~~ 289 (384)
..+++||||+...
T Consensus 163 ~~il~lTaTP~~~ 175 (773)
T PRK13766 163 PLVLGLTASPGSD 175 (773)
T ss_pred CEEEEEEcCCCCC
Confidence 7899999997533
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=178.10 Aligned_cols=222 Identities=17% Similarity=0.105 Sum_probs=163.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~- 198 (384)
-.++.||.......+.+ |.|++.|||-|||.++.+-+...+.. ..+ ++|+++||+.|+.|+++.|.+...
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 36899999988887764 99999999999999999988888754 334 899999999999999999999763
Q ss_pred -CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCC
Q 016712 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~ 277 (384)
.-.+..++|.....+....+.. .+|+|+||..+.+-+..+.+++.++.++|+||||+.....-+..+....-+-.+++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 3457788888887777666666 69999999999999999999999999999999999887766666666566667788
Q ss_pred cEEEEEccCChh---HHHHHHHhcCCCeEEEecCCCcccccCC---eEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHH
Q 016712 278 QSMMFSATMPPW---IRSLTNKYLKNPLTVDLVGDSDQKLADG---ISLYSIATSMNMQKVENALFSLKQNVMQTAWLML 351 (384)
Q Consensus 278 q~l~~SAT~~~~---~~~~~~~~l~~~~~i~~~~~~~~~~~~~---i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~ 351 (384)
.++++||||-.. +++.+....-+.+.+++..+. .+..+ +...++.+.. ......+...+.+......+.+.
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~--DV~~Yv~~~kve~ikV~l-p~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDP--DVRPYVKKIKVEWIKVDL-PEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCc--cHHHhhccceeEEEeccC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998665 444555555566677664333 33333 3334444432 22233344444444444444444
Q ss_pred hhc
Q 016712 352 WLK 354 (384)
Q Consensus 352 ~~~ 354 (384)
..|
T Consensus 241 ~~g 243 (542)
T COG1111 241 ELG 243 (542)
T ss_pred HcC
Confidence 444
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=190.73 Aligned_cols=146 Identities=21% Similarity=0.331 Sum_probs=126.0
Q ss_pred cCCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 102 SKLDISQDIVAALA-----RRGISKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 102 ~~l~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
+.+++...+.+.+. .+||..| +|+|.++++.+..++++++.++||+|||++|++|++..+.. +
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------G 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------c
Confidence 46777888888777 5799988 99999999999999999999999999999999999987753 2
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCCCCC------
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNALNLS------ 244 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~~~~------ 244 (384)
..++||+||++||.|..+.+..++. ++.+.+++||.+...+...+ ++||+||||++| .++++.+.+.++
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 3489999999999999999998865 56788899998887776554 599999999999 999988766655
Q ss_pred -CccEEEEeCccccc
Q 016712 245 -EVQFVVLDEADQML 258 (384)
Q Consensus 245 -~l~~vViDEah~~~ 258 (384)
.+.++||||||.|+
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 46899999999986
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=179.98 Aligned_cols=146 Identities=22% Similarity=0.216 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++++|++++..+.+ ++..++++|||+|||.+++..+-.. +..+|||+|+++|+.|+.+.+.+.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 599999999999998 8999999999999999875554432 233999999999999999888877
Q ss_pred CCCC-ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC
Q 016712 197 APSL-DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (384)
Q Consensus 197 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~ 275 (384)
+..- .+..+.|+. .... . ..|.|+|...+...........+..++||+||||++....+.. +...+..
T Consensus 104 ~~~~~~~g~~~~~~-~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~~~~~ 172 (442)
T COG1061 104 LLLNDEIGIYGGGE-KELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILELLSA 172 (442)
T ss_pred cCCccccceecCce-eccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH----HHHhhhc
Confidence 6422 233333332 2211 0 3699999988866421122334479999999999987764433 3333322
Q ss_pred CCcEEEEEccCChh
Q 016712 276 NRQSMMFSATMPPW 289 (384)
Q Consensus 276 ~~q~l~~SAT~~~~ 289 (384)
...++++|||++..
T Consensus 173 ~~~~LGLTATp~R~ 186 (442)
T COG1061 173 AYPRLGLTATPERE 186 (442)
T ss_pred ccceeeeccCceee
Confidence 22299999998744
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=179.56 Aligned_cols=128 Identities=24% Similarity=0.319 Sum_probs=105.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|||+|..+++.++.|+ |..+.||+|||++|.+|++.... .|++++|++||++||.|.++.+..+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al---------~G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL---------AGLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------cCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 377 59999999999999998 99999999999999999998763 3789999999999999999999987
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCC-------------------------CCCCccE
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNAL-------------------------NLSEVQF 248 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~-------------------------~~~~l~~ 248 (384)
+. ++.+.+++|+.+. +.+....++||+|||...| .+++..+.. ....+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 64 6778889998754 3445567899999999987 445543311 1356889
Q ss_pred EEEeCccccc
Q 016712 249 VVLDEADQML 258 (384)
Q Consensus 249 vViDEah~~~ 258 (384)
.||||+|.++
T Consensus 246 aIvDEvDSiL 255 (656)
T PRK12898 246 AIVDEADSVL 255 (656)
T ss_pred eEeeccccee
Confidence 9999999874
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=173.94 Aligned_cols=137 Identities=22% Similarity=0.211 Sum_probs=101.2
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH-
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL- 218 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 218 (384)
++.|+||||||++|+..+...+. .+.++||++|+++|+.|+++.|++.+ +..+.+++++.+..+....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHH
Confidence 47899999999999766555542 37789999999999999999999877 45677888887765544333
Q ss_pred --h-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-----h-HHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 219 --D-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 219 --~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-----~-~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
. ..++|+|||+..+. ..++++++|||||+|...-++ | ..++...... ..+.++|++|||++.+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHH
Confidence 2 34799999987663 357899999999999876332 1 1223333333 3589999999998766
Q ss_pred HHHHH
Q 016712 290 IRSLT 294 (384)
Q Consensus 290 ~~~~~ 294 (384)
....+
T Consensus 143 s~~~~ 147 (505)
T TIGR00595 143 SYHNA 147 (505)
T ss_pred HHHHH
Confidence 55544
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=178.64 Aligned_cols=165 Identities=20% Similarity=0.210 Sum_probs=133.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
..+++||.+.+..++ |+|+||++|||+|||+++...++.++.. .++.++++++|++.|+.|+...+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccCc
Confidence 369999999999999 9999999999999999999999988843 45688999999999999999888888766
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCC-CCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCCC
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN-LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNR 277 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~-~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~ 277 (384)
..+....|+.........+-...+|+|+||..+...+...... ++++.++||||||+-.... |...+...+..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 6777777775544444455556899999999999988776544 5899999999999988665 4444546666555556
Q ss_pred cEEEEEccCChhHHH
Q 016712 278 QSMMFSATMPPWIRS 292 (384)
Q Consensus 278 q~l~~SAT~~~~~~~ 292 (384)
|+|++|||+......
T Consensus 213 qILgLTASpG~~~~~ 227 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQ 227 (746)
T ss_pred cEEEEecCCCccHHH
Confidence 999999999765443
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-18 Score=177.02 Aligned_cols=253 Identities=17% Similarity=0.103 Sum_probs=154.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH----
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---- 195 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~---- 195 (384)
..|+|+|..+......+..+++.+|||+|||++++..+...+.. +...+++|..||+++++|+++++.+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 47999999886544445679999999999999987766543321 2346799999999999999999875
Q ss_pred hCCCCceEEEECCCChHHHH--------------------HHHh----c---CCCEEEECchhHHHHHHcc-CCCCCCc-
Q 016712 196 SAPSLDTICVYGGTPISHQM--------------------RALD----Y---GVDAVVGTPGRVIDLIKRN-ALNLSEV- 246 (384)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~--------------------~~~~----~---~~~IlV~Tp~~l~~~l~~~-~~~~~~l- 246 (384)
.+....+.+.+|........ ..+. + -.+|+|||.+.++...... ...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 44444566677664322110 0111 1 1699999999887554332 1222223
Q ss_pred ---cEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHH-HHhcCC-Ce-------EEEecCC---C
Q 016712 247 ---QFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLT-NKYLKN-PL-------TVDLVGD---S 310 (384)
Q Consensus 247 ---~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~-~~~l~~-~~-------~i~~~~~---~ 310 (384)
++|||||+|.+ +......+..+++.+. ....+|+||||+|...++.+ ..|-.. +. .+..... .
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 48999999976 3334555666666553 36789999999998876543 333111 00 0100000 0
Q ss_pred cc---------cccCCeEEEEEEec---cchhhHH------------HHHHHHhHhHHHHHHHHHhhc---ceEEEecCC
Q 016712 311 DQ---------KLADGISLYSIATS---MNMQKVE------------NALFSLKQNVMQTAWLMLWLK---VIIVSLCMG 363 (384)
Q Consensus 311 ~~---------~~~~~i~~~~~~~~---~~~~k~~------------~l~~~~~~~~~~~~~~l~~~~---~~v~~~hg~ 363 (384)
.. .....+........ ..+.-.+ .+++|.++.++++++.|...+ ..+..+||+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 00000111101000 0011111 123455677888888887654 689999999
Q ss_pred CChhhh----hchhhhh-hcCC
Q 016712 364 ISHKAR----GRGPFQL-SEMD 380 (384)
Q Consensus 364 m~~~eR----~~il~~F-~~~~ 380 (384)
|+..+| +++++.| ++|+
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~ 618 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGK 618 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCC
Confidence 999999 5678888 6665
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=177.34 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCcHHHHHHHHHHhC-C--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQ-G--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~-g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++|||.+++..+.. | +..++++|||+|||++.+..+ ..+ +..+|||||+..|+.||.+.|.++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999999874 3 378999999999999876443 333 3459999999999999999999975
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--------cCCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--------~~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
. ...+..++|+.... .....+|+|+|+..+.....+ ..+.-..+++||+||||++... ...
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHH
Confidence 2 33445555543221 112368999999877533211 1122346899999999998543 344
Q ss_pred HHHHHCCCCCcEEEEEccCChh
Q 016712 268 VILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.++..+. ....+++||||...
T Consensus 394 ~il~~l~-a~~RLGLTATP~Re 414 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVRE 414 (732)
T ss_pred HHHHhcC-cCcEEEEeecCccc
Confidence 5566554 34589999998643
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=172.46 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=107.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|..+...+..|+ |..++||+|||++|.+|++...+. |.++.|++||.+||.|.++.+..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 377 59999999998888776 999999999999999999644432 567999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCcccccC
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~~ 259 (384)
+. ++.+.+++|+.+..+.... ..+||+||||++| .+++..+ ...+++++++||||+|.++-
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 76 5677888888776544333 3589999999999 8888766 34678999999999999863
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-18 Score=174.35 Aligned_cols=129 Identities=19% Similarity=0.282 Sum_probs=106.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|+++|..+...+.+|+ |+.+.||+|||++|.+|++.... .|++++|++||++||.|.++.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 387 59999999999988876 99999999999999999986653 3788999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.|+.+...+.+ ...++||+||||+++ .+++..+. ..++.+.++||||+|.|+
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 75 577888888887433333 345699999999999 55554432 246789999999999885
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-18 Score=172.99 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=95.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .|++.|......+..| .++.++||+|||++|.+|++...+ .++.++|++|+++||.|..+.+..++
T Consensus 68 gl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL---------~g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 68 GM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL---------TGKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred CC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh---------cCCceEEeCCCHHHHHHHHHHHHHHH
Confidence 55 4555555555554444 799999999999999999876653 35679999999999999999998876
Q ss_pred C--CCceEEEECCC---ChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGT---PISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~---~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~ 258 (384)
. ++.+.+.+++. ......+....++||++|||++| .+++..+ ...++.+.++||||||.|+
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 4 45666665542 12333344456799999999999 5555332 3447789999999999985
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=178.15 Aligned_cols=177 Identities=23% Similarity=0.306 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccC--CCCCCEEEEEecC
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPT 182 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~--~~~~~~~lvl~Pt 182 (384)
+|.+-+.++. |...+.++|....+..+.+ .++++|||||+|||..+++-+++.+..+..... .....+++|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 3444444443 5667999999999998876 589999999999999999999999866433211 1234589999999
Q ss_pred HHHHHHHHHHHHHhCCCCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC---CCCCccEEEEeCcccc
Q 016712 183 RELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NLSEVQFVVLDEADQM 257 (384)
Q Consensus 183 ~~La~q~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~---~~~~l~~vViDEah~~ 257 (384)
++|++.+...|.+....++ |...+|+.....+ . ..+.+|+||||++. +.+.++.- ..+-++++||||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~--q-ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE--Q-IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhh--h-hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 9999999999998776554 5556666443221 1 12479999999998 55554432 2345789999999965
Q ss_pred cCCChHHHHHHHHHHC-------CCCCcEEEEEccCChh
Q 016712 258 LSVGFAEDVEVILERL-------PQNRQSMMFSATMPPW 289 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l-------~~~~q~l~~SAT~~~~ 289 (384)
-|. .|+.++.|..+. ...+..+++|||+|+.
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy 487 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY 487 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCch
Confidence 454 788887776654 2378999999999986
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=181.50 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=141.2
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
..+| .+.++|++++..+.+|.++++++|||+|||++.-.++...+. ++.+++|.+|.++|.+|.++.|..
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~---------~~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR---------DGQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH---------cCCceEeccchhhhhhhHHHHHHH
Confidence 4577 599999999999999999999999999999999888887774 366699999999999999999999
Q ss_pred hCCCC--ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 196 SAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 196 ~~~~~--~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
.+.++ .+.+.+|+.+.+ .++.++|.|.+.|..++.++...+.++..||+||+|.|.+...+..+++++-.+
T Consensus 185 ~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 185 KFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 88533 245677765544 348999999999999999988889999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCChhHHHHHHH
Q 016712 274 PQNRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 274 ~~~~q~l~~SAT~~~~~~~~~~~ 296 (384)
|.++|+++||||+|+. .++..+
T Consensus 258 P~~v~~v~LSATv~N~-~EF~~W 279 (1041)
T COG4581 258 PDHVRFVFLSATVPNA-EEFAEW 279 (1041)
T ss_pred CCCCcEEEEeCCCCCH-HHHHHH
Confidence 9999999999999876 334333
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=175.05 Aligned_cols=231 Identities=18% Similarity=0.251 Sum_probs=143.3
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec----CHHHHHHHHHHHHH-hCCC
Q 016712 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP----TRELAKQVEKEFHE-SAPS 199 (384)
Q Consensus 125 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P----t~~La~q~~~~~~~-~~~~ 199 (384)
+-.+.+..+..+..++++|+||||||. .+|.+..-.. .+....+++.-| +++||.++.+++.. ++..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 334555566666778889999999999 5785433211 111223444456 56888888887775 3322
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc-cccCCChHHH-HHHHHHHCCCCC
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNR 277 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah-~~~~~~~~~~-~~~il~~l~~~~ 277 (384)
++..+-+. . ....+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... +..++.. .++.
T Consensus 150 VGY~vrf~-----~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 150 VGYKVRFN-----D---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred eceeecCc-----c---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCc
Confidence 22111111 1 113458999999999999987654 48999999999999 6888877643 3333332 2578
Q ss_pred cEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc-----hhhHHHHHH---------------
Q 016712 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN-----MQKVENALF--------------- 337 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~--------------- 337 (384)
|+|+||||++. ..+...|...| .|.+.+.. . .+..++...... ......++.
T Consensus 220 KvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-~----pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-Y----PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-c----cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999975 35555554445 46554321 1 234444433211 111111111
Q ss_pred --HHhHhHHHHHHHHHhhcce---EEEecCCCChhhhhchhhhhhcCCccc
Q 016712 338 --SLKQNVMQTAWLMLWLKVI---IVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 338 --~~~~~~~~~~~~l~~~~~~---v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
...++++.++..|...+.. +..+||+|+.++|+++++.+ |..+|
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g~rkI 340 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--SGRRI 340 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--CCeeE
Confidence 1226677788888776654 78999999999999999873 44444
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=135.57 Aligned_cols=143 Identities=42% Similarity=0.586 Sum_probs=111.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQM 215 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 215 (384)
+++++.++||+|||..++..+...... ....+++|++|+..++.|+.+.+..... ...+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 468999999999999988877776533 2457899999999999999999988775 46666677766655555
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccC
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
.....+.+|+++|++.+...+..........+++||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55566799999999999888877665667899999999999877654443222344456788999999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-17 Score=167.13 Aligned_cols=127 Identities=27% Similarity=0.362 Sum_probs=103.9
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .+++.|...--.+..|+ |..++||+|||++|.+|++..+.. |..++|++||++||.|.++.+..++
T Consensus 80 g~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 80 GL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 66 48888877665565554 899999999999999999977643 5569999999999999999999987
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc-CCCC-----CCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~-~~~~-----~~l~~vViDEah~~~ 258 (384)
. ++.+.+++|+.+.......+ .+||+||||++| .+++..+ .+.+ +.+.++||||+|.|+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 6 56788888987766554433 589999999999 8988876 3334 589999999999886
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=169.30 Aligned_cols=160 Identities=21% Similarity=0.256 Sum_probs=139.4
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+| ++.++|++||-++.+|.++++.|+|.+|||+++-.++.-.. ..+.+++|-+|-++|-+|-++.|++.+
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHHHhc
Confidence 45 69999999999999999999999999999999877765443 246789999999999999999999988
Q ss_pred CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCC
Q 016712 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~ 277 (384)
.+.+ +++|+.....+ +.++|.|.+.|.+++.++.--.+++.+||+||+|.+.|...+..+++++=.+|+++
T Consensus 365 ~Dvg--LlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 365 GDVG--LLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred cccc--eeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 7555 78887655443 79999999999999988877789999999999999999999999999999999999
Q ss_pred cEEEEEccCChhHHHHHHHh
Q 016712 278 QSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~ 297 (384)
++|++|||.|+. .+++.+.
T Consensus 436 ~~IlLSATVPN~-~EFA~WI 454 (1248)
T KOG0947|consen 436 NFILLSATVPNT-LEFADWI 454 (1248)
T ss_pred eEEEEeccCCCh-HHHHHHh
Confidence 999999999976 4455544
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=137.52 Aligned_cols=150 Identities=24% Similarity=0.228 Sum_probs=103.6
Q ss_pred CCcHHHHHHHHHHhC-------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQ-------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~-------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+++++|.+++..+.. .++.++.+|||+|||.+++..+.... . +++|++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C-EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c-ceeEecCHHHHHHHHHHHH
Confidence 589999999998873 58999999999999999875555443 1 7999999999999999999
Q ss_pred HHhCCCCceEEE-------------ECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC-----------CCCCCccEE
Q 016712 194 HESAPSLDTICV-------------YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-----------LNLSEVQFV 249 (384)
Q Consensus 194 ~~~~~~~~~~~~-------------~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~-----------~~~~~l~~v 249 (384)
..+......... .................++++.|...+........ ......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 776643322211 11111122222334468999999999987765321 223467899
Q ss_pred EEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
|+||||++.... ....++. .+...+|+|||||.
T Consensus 151 I~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 999999965432 1455555 55778999999986
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=155.85 Aligned_cols=169 Identities=22% Similarity=0.253 Sum_probs=144.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
.++.|+|..+|-.+-++.++++.|.|.+|||.++-.++...+.+ .-+|+|-+|-++|-+|-|+++..-+.+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 36899999999999999999999999999999999998888744 567999999999999999999987754
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcE
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~ 279 (384)
++..+|+.+.+. .+..+|.|.+.|..++.++.--++.+..||+||+|.|-|...+..+++-+-.+|++..+
T Consensus 199 --VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 199 --VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred --cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 456777765443 37899999999999998888788999999999999999998999999988899999999
Q ss_pred EEEEccCChhHHHHHHHh---cCCCeEEEec
Q 016712 280 MMFSATMPPWIRSLTNKY---LKNPLTVDLV 307 (384)
Q Consensus 280 l~~SAT~~~~~~~~~~~~---l~~~~~i~~~ 307 (384)
+++|||+|+. .+++++. -..|..|.+.
T Consensus 270 VFLSATiPNA-~qFAeWI~~ihkQPcHVVYT 299 (1041)
T KOG0948|consen 270 VFLSATIPNA-RQFAEWICHIHKQPCHVVYT 299 (1041)
T ss_pred EEEeccCCCH-HHHHHHHHHHhcCCceEEee
Confidence 9999999987 4444443 3467766553
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=154.75 Aligned_cols=128 Identities=22% Similarity=0.295 Sum_probs=104.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|.-.-=.+..|+ |..+.||+|||+++.+|++-..+ .|..+-|++||..||.|.++.+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL---------TGKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 477 59999988876666664 99999999999999999963332 2556889999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCC------CCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNAL------NLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~------~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.|+.+..+....+ .+||++|||+.| .+++..+.. ..+.+.++||||+|.|+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 86 56778888888777665554 489999999999 888876642 36789999999999885
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=162.51 Aligned_cols=229 Identities=20% Similarity=0.244 Sum_probs=143.9
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE
Q 016712 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY 206 (384)
Q Consensus 127 ~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~ 206 (384)
.+.+..+..+..+|++|+||||||. .+|.+..-. +.+...++++.-|.+.-|..+..++.+.. +..+....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~------~~~~~~~I~~tQPRRlAA~svA~RvA~el-g~~lG~~V 143 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLEL------GRGSHGLIGHTQPRRLAARTVAQRIAEEL-GTPLGEKV 143 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHc------CCCCCceEecCCccHHHHHHHHHHHHHHh-CCCcceEE
Confidence 3455556666788999999999999 467553321 11223456777898888888887766644 23333333
Q ss_pred CCC-ChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc-cccCCChHHH-HHHHHHHCCCCCcEEEEE
Q 016712 207 GGT-PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQSMMFS 283 (384)
Q Consensus 207 g~~-~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah-~~~~~~~~~~-~~~il~~l~~~~q~l~~S 283 (384)
|.. ..... ...+..|.|+|+|.|+..+.... .+.++++|||||+| ++++.+|.-. ++.++.. .++.++|+||
T Consensus 144 GY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 144 GYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred eeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEe
Confidence 321 11111 12357899999999999887654 48999999999999 6888877654 5555544 3578999999
Q ss_pred ccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc-----hhhHHHHHH-----------------HHhH
Q 016712 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN-----MQKVENALF-----------------SLKQ 341 (384)
Q Consensus 284 AT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~-----------------~~~~ 341 (384)
||++. ..+...|...| .|.+.+. ..+ +..+|...... ..+.+.++. ....
T Consensus 219 ATld~--~~fa~~F~~ap-vI~V~Gr-~~P----Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAP-IIEVSGR-TYP----VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred CCcCH--HHHHHHhcCCC-EEEECCC-ccc----ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 99974 45555554444 4555432 112 22333222110 011111111 1226
Q ss_pred hHHHHHHHHHhh---cceEEEecCCCChhhhhchhhhhh
Q 016712 342 NVMQTAWLMLWL---KVIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 342 ~~~~~~~~l~~~---~~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
+++.++..|... +..+..+||+|+.++|+++++.+.
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~ 329 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS 329 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC
Confidence 666777777765 356899999999999999977663
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=151.46 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=165.5
Q ss_pred HHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.+.+.+.+. |+ .|+..|+.....+..|++.-+.||||.|||.--++..+... ..|.++++|+||+.|+.
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---------~kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---------KKGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---------hcCCeEEEEecCHHHHH
Confidence 345556665 66 79999999999999999999999999999984433333222 34789999999999999
Q ss_pred HHHHHHHHhCCC---CceEE-EECCCChHH---HHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 188 QVEKEFHESAPS---LDTIC-VYGGTPISH---QMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 188 q~~~~~~~~~~~---~~~~~-~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
|+++.++++... ..+.+ .++..+.++ ..+.+.+ +.||+|+|..-|...+.. +.-.++++|++|++|.++.
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHh
Confidence 999999998742 33333 445444433 2334444 489999997666555432 1114689999999998875
Q ss_pred CC-----------hHHH-------HHHHHHHC------------------------CCCCcEEEEEccCChhH-H-HHHH
Q 016712 260 VG-----------FAED-------VEVILERL------------------------PQNRQSMMFSATMPPWI-R-SLTN 295 (384)
Q Consensus 260 ~~-----------~~~~-------~~~il~~l------------------------~~~~q~l~~SAT~~~~~-~-~~~~ 295 (384)
.+ |..+ +..+...+ .+..+++..|||..++- + .+.+
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 32 2221 11111111 13468999999986542 2 2333
Q ss_pred HhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHH-------------hHhHHHHHHHHHhhcceEEEecC
Q 016712 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL-------------KQNVMQTAWLMLWLKVIIVSLCM 362 (384)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~-------------~~~~~~~~~~l~~~~~~v~~~hg 362 (384)
..++-- + ......+.++...++.. ...++...++..+ .+.++.++..+..+|+.+..+|+
T Consensus 298 eLlgFe----v--G~~~~~LRNIvD~y~~~-~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 298 ELLGFE----V--GSGGEGLRNIVDIYVES-ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred HHhCCc----c--CccchhhhheeeeeccC-ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 332211 1 11223445555444444 3344444443322 38888999999999999999998
Q ss_pred CCChhhhhchhhhhhcCCcccC
Q 016712 363 GISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 363 ~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+ .++.+++|..||+||+
T Consensus 371 ~-----~~~~le~F~~GeidvL 387 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVL 387 (1187)
T ss_pred c-----chhhhhhhccCceeEE
Confidence 3 3789999999999985
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-15 Score=134.80 Aligned_cols=235 Identities=15% Similarity=0.103 Sum_probs=155.1
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++++.|+.+-+. +.+.++.++.|-||+|||+. +++.++..++ .|.++.+.+|....|.+++.++++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 689999887554 44668999999999999995 4666666654 4888999999999999999999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+++..+.+++|+...... .+++|+|...|+..- +.++++||||+|...-..-..-...+-+.....
T Consensus 168 F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 168 FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 999999999998765443 689999987776643 357899999999865221111122233334557
Q ss_pred CcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH-----HH----------------
Q 016712 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE-----NA---------------- 335 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l---------------- 335 (384)
.-+|.+|||+++..+.-+...-.. .+.++ ..-+...- ....+++..+...+.. ..
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~--~~klp-~RfH~~pL-pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLR--ILKLP-ARFHGKPL-PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCee--Eeecc-hhhcCCCC-CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 789999999998766554443222 22221 11111010 1111222222222211 01
Q ss_pred -HHHHhHhHHHHHHHHHh-h-cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 -LFSLKQNVMQTAWLMLW-L-KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 -~~~~~~~~~~~~~~l~~-~-~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...++..++++..|.. . ...++..|+. ...|.+..++|++|+++++
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lL 359 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLL 359 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEE
Confidence 12223555666666632 2 4566788874 5678999999999999874
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=153.31 Aligned_cols=172 Identities=20% Similarity=0.217 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH--HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVL--EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i--~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
++....-.....|..+++.||.+|+ +.++.++|.|...||+.|||+++-+-++..++.. +..++.+.|..
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~v 279 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPYV 279 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEeccee
Confidence 3333444444569999999999997 5578899999999999999999999999888763 45599999999
Q ss_pred HHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--cCCCCCCccEEEEeCcccccC
Q 016712 184 ELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 184 ~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~l~~vViDEah~~~~ 259 (384)
..++.....+..+.. ++.+.+++|..+.... .+.-++.|+|.++-..++.. ..-.+..+++|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 999988888887764 4556666655443322 22358999999987666543 122466799999999999999
Q ss_pred CChHHHHHHHHHHC-----CCCCcEEEEEccCChh
Q 016712 260 VGFAEDVEVILERL-----PQNRQSMMFSATMPPW 289 (384)
Q Consensus 260 ~~~~~~~~~il~~l-----~~~~q~l~~SAT~~~~ 289 (384)
.+.+..++.++.++ ....|+|+||||+|+.
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 99999998888764 3457899999999874
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=141.56 Aligned_cols=157 Identities=22% Similarity=0.239 Sum_probs=119.9
Q ss_pred CCCcHHHHHHHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
..+++-|..+++.+... ...++.|.||||||.+|+-.+-..+. .|+++|+|+|-..|-.|+.++|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---------QGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------cCCEEEEEeccccchHHHHHHHHH
Confidence 35788999999998765 57899999999999999666666552 488999999999999999999999
Q ss_pred hCCCCceEEEECCCChHHHHHHHh----cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc---CCC---hHHH
Q 016712 196 SAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML---SVG---FAED 265 (384)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~---~~~---~~~~ 265 (384)
++. .++.+++++.+..+....+. ....|||||-..+ ...|+++++|||||.|--. +.+ ...+
T Consensus 268 rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 268 RFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred HhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 995 88889999887766555553 3589999995443 4568999999999999643 111 2233
Q ss_pred HHHHHHHCCCCCcEEEEEccCChhHHHHH
Q 016712 266 VEVILERLPQNRQSMMFSATMPPWIRSLT 294 (384)
Q Consensus 266 ~~~il~~l~~~~q~l~~SAT~~~~~~~~~ 294 (384)
+...... ..++++|+-|||+.=+....+
T Consensus 340 vA~~Ra~-~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 340 VAVLRAK-KENAPVVLGSATPSLESYANA 367 (730)
T ss_pred HHHHHHH-HhCCCEEEecCCCCHHHHHhh
Confidence 3333333 358999999999775544444
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=151.94 Aligned_cols=250 Identities=17% Similarity=0.130 Sum_probs=159.9
Q ss_pred CcHHHHHHHHHHhCC---C-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 122 LFPIQKAVLEPAMQG---R-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g---~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++.|..++..+... . .+++.+|||+|||++.+.+++..+... .....+++++.|++.++++++++++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 489999999887754 4 788999999999999999988877542 1247789999999999999999999876
Q ss_pred CCCceEEE--ECCCChHHHHHH-----H---------hcCCCEEEECchhHHHHHHccCCCCC-----CccEEEEeCccc
Q 016712 198 PSLDTICV--YGGTPISHQMRA-----L---------DYGVDAVVGTPGRVIDLIKRNALNLS-----EVQFVVLDEADQ 256 (384)
Q Consensus 198 ~~~~~~~~--~g~~~~~~~~~~-----~---------~~~~~IlV~Tp~~l~~~l~~~~~~~~-----~l~~vViDEah~ 256 (384)
....+... ++.....-.... . .....+.++||..+..... ....+. -.+.+|+||+|.
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSV-KGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhc-cccchHHHHHHHhhchhhccHHh
Confidence 53333333 332221111000 0 0013445555544433111 111111 136899999998
Q ss_pred ccCCChHHHHHHHHHHC-CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC----CCcccccCC-----eEE------
Q 016712 257 MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG----DSDQKLADG-----ISL------ 320 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~----~~~~~~~~~-----i~~------ 320 (384)
+.+......+..++..+ ..+..+|+||||+|+...+.+...+.....+.... ..++..... +..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 87763333334444433 24789999999999999988888776554443210 011110000 000
Q ss_pred -EEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhh
Q 016712 321 -YSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 321 -~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
..+.....+.+...+++|.++.+.+++..+...+..+.++||.|+..+|++.++.++
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~ 487 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELK 487 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHH
Confidence 001111123344455778889999999999988889999999999999999999655
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=143.26 Aligned_cols=127 Identities=21% Similarity=0.268 Sum_probs=100.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .|++.|.-.--.+..| .|..++||.|||++|.+|++...+. |..|.||+|+..||.|..+.+..++
T Consensus 80 gm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 80 EM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 66 4888887665455554 4899999999999999999877643 5559999999999999999998876
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc-CCCC-----CCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~-~~~~-----~~l~~vViDEah~~~ 258 (384)
. ++.+.++.++.+..+ +.-..++||++|||+.| .+++..+ .... ..+.++||||+|.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 5 677788888766532 33334789999999999 8888776 3333 678999999999886
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=148.75 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=107.6
Q ss_pred CCcHHHHHHHHHHh----CC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.++++|.+||..+. .| ++.+++++||+|||.+++ .++..+... ....++|||+|+++|+.|..+.|+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 58999999998765 33 579999999999999753 344444331 2356899999999999999999998
Q ss_pred hCCCCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-----CCCCCCccEEEEeCcccccC------C--
Q 016712 196 SAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLS------V-- 260 (384)
Q Consensus 196 ~~~~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-----~~~~~~l~~vViDEah~~~~------~-- 260 (384)
....-. ...+++....... ......+|+|+|..++...+... ...+.++++|||||||+... .
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 742111 1111111110111 11234799999999987765432 23567899999999999531 0
Q ss_pred -------ChHHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 261 -------GFAEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 261 -------~~~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
.+...+..++..+ +.-.|+|||||...+
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t 598 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHT 598 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccch
Confidence 1245667777755 357899999986543
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=138.74 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.|.|||..+...+... ..+|+.-.+|.|||.-+.+.+-..+.. +...++|||||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 4899999998777644 478999999999999886555444322 334579999998 89999999998766
Q ss_pred CCceEEEECCCChHHHH--HHHhcCCCEEEECchhHHHHHH-ccCCCCCCccEEEEeCcccccCCC--hHHHHHHHHHHC
Q 016712 199 SLDTICVYGGTPISHQM--RALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERL 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~--~~~~~~~~IlV~Tp~~l~~~l~-~~~~~~~~l~~vViDEah~~~~~~--~~~~~~~il~~l 273 (384)
++...++.++....... .......+++|+|.+.+...-. ...+.-.++++|||||||++-... -... ...+..+
T Consensus 223 ~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~-y~~v~~L 301 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSRE-YQVVEQL 301 (956)
T ss_pred CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHH-HHHHHHH
Confidence 45555554432111000 0111136899999877654111 111223478999999999986211 1111 2233333
Q ss_pred C-CCCcEEEEEccCC
Q 016712 274 P-QNRQSMMFSATMP 287 (384)
Q Consensus 274 ~-~~~q~l~~SAT~~ 287 (384)
. ....++++||||.
T Consensus 302 a~~~~~~LLLTATP~ 316 (956)
T PRK04914 302 AEVIPGVLLLTATPE 316 (956)
T ss_pred hhccCCEEEEEcCcc
Confidence 2 3456899999984
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-13 Score=137.70 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=101.4
Q ss_pred CcHHHHHHHHHHh----C------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----Q------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
++++|..|+..+. . .+..++..+||||||++.+..+...+ . ....+++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~------~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E------LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h------hcCCCeEEEEECcHHHHHHHHH
Confidence 7889999998753 2 24789999999999998765554433 2 1346789999999999999999
Q ss_pred HHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHcc--CCCCCCc-cEEEEeCcccccCCChHHHHH
Q 016712 192 EFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN--ALNLSEV-QFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 192 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~--~~~~~~l-~~vViDEah~~~~~~~~~~~~ 267 (384)
.|..+..+.. .+..+.......+.. ..+|+|+|..++...+... ......- -+||+||||+.... .+.
T Consensus 312 ~f~~~~~~~~----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~ 383 (667)
T TIGR00348 312 EFQSLQKDCA----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELA 383 (667)
T ss_pred HHHhhCCCCC----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHH
Confidence 9999874211 111222333333333 3689999999997644321 1111111 28999999986433 233
Q ss_pred HHHHHCCCCCcEEEEEccCCh
Q 016712 268 VILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~ 288 (384)
..++..-++..+++|||||-.
T Consensus 384 ~~l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 384 KNLKKALKNASFFGFTGTPIF 404 (667)
T ss_pred HHHHhhCCCCcEEEEeCCCcc
Confidence 344333346789999999854
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=128.64 Aligned_cols=233 Identities=19% Similarity=0.183 Sum_probs=150.1
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-CCc
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLD 201 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~ 201 (384)
+....+.+..+.+..-++|+|+||||||.- +|-+.. +. +...+..+.+.-|.|--|..+.+++.+... .++
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~ll--e~----g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLL--EE----GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHH--hh----hcccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 444555666677778899999999999983 553322 11 113456788888999888888888776542 222
Q ss_pred --eEE--EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCChH-HHHHHHHHHCCC
Q 016712 202 --TIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFA-EDVEVILERLPQ 275 (384)
Q Consensus 202 --~~~--~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~~~-~~~~~il~~l~~ 275 (384)
|+. -+.+.. .....|-+.|.|.|+..+..... ++.+++|||||+|. -++..+. .-+..++...++
T Consensus 124 ~~VGY~iRfe~~~--------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 124 ETVGYSIRFESKV--------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred ceeeEEEEeeccC--------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 221 111111 12368999999999999876654 89999999999994 3333333 234455666777
Q ss_pred CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHH----------------
Q 016712 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL---------------- 339 (384)
Q Consensus 276 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~---------------- 339 (384)
+..+|+||||+... ....++.+.-.+.+.+. ..-+..+|......+++.+..+...
T Consensus 195 DLKiIimSATld~~---rfs~~f~~apvi~i~GR-----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFL 266 (845)
T COG1643 195 DLKLIIMSATLDAE---RFSAYFGNAPVIEIEGR-----TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFL 266 (845)
T ss_pred CceEEEEecccCHH---HHHHHcCCCCEEEecCC-----ccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEEC
Confidence 89999999999754 34556666555555432 1123333322222233222222111
Q ss_pred --hHhHHHHHHHHHh----hcceEEEecCCCChhhhhchhhhhhcCC
Q 016712 340 --KQNVMQTAWLMLW----LKVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 340 --~~~~~~~~~~l~~----~~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.+++.+.+..+.. ..+.+..+||.|+.+++.++++--..|.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~ 313 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGK 313 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCc
Confidence 1666677777776 3588999999999999999998777763
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=135.86 Aligned_cols=75 Identities=27% Similarity=0.309 Sum_probs=63.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHH----HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 107 SQDIVAALARRGISKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
++.+.+.+...||+ ++|.|.+.++ .+.+|+++++.||||+|||++|++|++.... .+.+++|.+||
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t 301 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNT 301 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCc
Confidence 45677778788986 8999998666 5557889999999999999999999987652 25689999999
Q ss_pred HHHHHHHHH
Q 016712 183 RELAKQVEK 191 (384)
Q Consensus 183 ~~La~q~~~ 191 (384)
++|..|+..
T Consensus 302 ~~Lq~Ql~~ 310 (850)
T TIGR01407 302 KVLQSQLLE 310 (850)
T ss_pred HHHHHHHHH
Confidence 999999865
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=124.45 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=108.2
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+++||.+.+.-+. .|.+.|++-..|.|||+.. +.++..+... .+....+|||||. .+..+|.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999998764 5788999999999999965 3333333221 1223458999997 5678899999999
Q ss_pred CCCCceEEEECCCChHHHHH-H-H-hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 197 APSLDTICVYGGTPISHQMR-A-L-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~-~-~-~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
++.+.+..++|......... . + ....+|+|+|.+.+..... .+.--++++|||||+|++-.. .......+..+
T Consensus 242 ~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 242 CPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 99888888888654332221 1 1 2347999999988765332 222235789999999998653 33445556666
Q ss_pred CCCCcEEEEEccCC
Q 016712 274 PQNRQSMMFSATMP 287 (384)
Q Consensus 274 ~~~~q~l~~SAT~~ 287 (384)
.. ...+++|+||-
T Consensus 318 ~a-~~RLLLTGTPl 330 (1033)
T PLN03142 318 ST-NYRLLITGTPL 330 (1033)
T ss_pred hc-CcEEEEecCCC
Confidence 43 44688999984
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=126.61 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=114.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
.|..||.+.+..+-.+...+|++||.+|||.+-. -+++.+... ....-+|+++||++|++|+.......+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 4899999999999999999999999999999653 344444431 4567799999999999999888777652
Q ss_pred CCceEE-EECCCChHHHHHHHhcCCCEEEECchhHHHHHHc---cCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 199 SLDTIC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 199 ~~~~~~-~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~---~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
.+.... +.|... ++.+.-.-.|+|+|+-|+++-.++.. ..-+.++++++|+||+|.+....-+--++.++...
T Consensus 584 t~~rg~sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 222111 222211 11111123589999999999998877 34567899999999999987654344445554444
Q ss_pred CCCcEEEEEccCChh
Q 016712 275 QNRQSMMFSATMPPW 289 (384)
Q Consensus 275 ~~~q~l~~SAT~~~~ 289 (384)
.|+++++|||+.+.
T Consensus 661 -~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 -PCPFLVLSATIGNP 674 (1330)
T ss_pred -CCCeeEEecccCCH
Confidence 68999999998654
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=100.75 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=82.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+|+-.++...+|+|||--.+--++..-.. .+.++|||.|||.++..+.+.++.. ++..-.. ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~-~~~~-- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTN-ARMR-- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEEST-TSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccCce-eeec--
Confidence 45567889999999999765555544333 4788999999999999988888653 3222211 1111
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC--hHHHHHHHHHHCCCCCcEEEEEccCChhHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~--~~~~~~~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
....+.-|-|.|...+.+.+.+ .....++++||+||||...... +...+... .. ...+.+|.||||+|....
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSED 141 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---
T ss_pred --cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCC
Confidence 1123457888999998887766 6667899999999999643221 11222222 11 134679999999998753
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=129.56 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=114.5
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.++.+|..||..+. +|+ ..|+++.||+|||..+ +.++..+... +.-+++|+|+-++.|+.|.+..|..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------chhheeeEEechHHHHHHHHHHHHH
Confidence 58999999987654 453 5899999999999976 6677777652 4567899999999999999999999
Q ss_pred hCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-----CCCCCCccEEEEeCcccccCCChHHHHHHHH
Q 016712 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (384)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-----~~~~~~l~~vViDEah~~~~~~~~~~~~~il 270 (384)
+.|+-....+..+..... .++|.|+|..++...+... .+....+++|||||||+ |.......|+
T Consensus 238 ~~P~~~~~n~i~~~~~~~-------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~ 306 (875)
T COG4096 238 FLPFGTKMNKIEDKKGDT-------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSIL 306 (875)
T ss_pred hCCCccceeeeecccCCc-------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHH
Confidence 988655444333322211 3799999999998888654 33456699999999998 3555666777
Q ss_pred HHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 271 ERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 271 ~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
..+..- .+++||||...+..-.-.|+
T Consensus 307 dYFdA~--~~gLTATP~~~~d~~T~~~F 332 (875)
T COG4096 307 DYFDAA--TQGLTATPKETIDRSTYGFF 332 (875)
T ss_pred HHHHHH--HHhhccCccccccccccccc
Confidence 776433 33449998764443333333
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=124.14 Aligned_cols=61 Identities=28% Similarity=0.250 Sum_probs=50.6
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
...+.+++.+++.++||+|||++|++|++..+.. ..+.++||++||++|+.|+.+.+..+.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-------~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-------RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-------ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999987642 236789999999999999998776554
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-11 Score=121.17 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=99.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|.-.-=.+..|+ |....||+|||+++.+|++.... .|.+|-|++||.-||.|.++.+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al---------~G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL---------TGKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH---------cCCCeEEEeccHHHHHhhHHHHHHH
Confidence 376 59999988876676666 99999999999999999988774 4888999999999999999999988
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHH-HHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~-~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+.... ..+||++||...|- ++++.+. .....+.+.||||+|.++
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 76 5677777776655544333 35799999998773 3443321 123568899999999875
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-10 Score=109.35 Aligned_cols=229 Identities=16% Similarity=0.198 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh-C----
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-A---- 197 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~-~---- 197 (384)
+.+-.+.+..+.+.+-+|+.|+||||||. .+|= .+.+. +....+.+.+.-|.|--|..++++..+- +
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQ--yL~ea----G~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQ--YLAEA----GFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhH--HHHhc----ccccCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 34445667777788889999999999997 4552 23221 2223344888889998888887776553 2
Q ss_pred CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCC-hHHHHHHHHHHCCC
Q 016712 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVG-FAEDVEVILERLPQ 275 (384)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~-~~~~~~~il~~l~~ 275 (384)
..++-.+-+.+.... ...|.+.|-|.|++-+..+. .+++.++|||||||. -+... ...-++.++++ ++
T Consensus 125 ~~VGY~IRFed~ts~--------~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~ 194 (674)
T KOG0922|consen 125 EEVGYTIRFEDSTSK--------DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RP 194 (674)
T ss_pred ceeeeEEEecccCCC--------ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CC
Confidence 222222223322222 25899999999988876554 378999999999994 11111 12223333332 34
Q ss_pred CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh----------------hHHHHHHHH
Q 016712 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ----------------KVENALFSL 339 (384)
Q Consensus 276 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~----------------k~~~l~~~~ 339 (384)
+..+|+||||+.- +....|+.+..++.++|. . -.+..++...+..+. ..+.+++..
T Consensus 195 ~LklIimSATlda---~kfS~yF~~a~i~~i~GR-~----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLt 266 (674)
T KOG0922|consen 195 DLKLIIMSATLDA---EKFSEYFNNAPILTIPGR-T----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLT 266 (674)
T ss_pred CceEEEEeeeecH---HHHHHHhcCCceEeecCC-C----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeC
Confidence 6789999999973 455667776555555432 1 112223322222111 111122221
Q ss_pred -hHhHHHHHHHHHhh----c----ceEEEecCCCChhhhhchhhhhh
Q 016712 340 -KQNVMQTAWLMLWL----K----VIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 340 -~~~~~~~~~~l~~~----~----~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
.++++..+..|... + ..+..+||.|+.+++.++++.--
T Consensus 267 GqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p 313 (674)
T KOG0922|consen 267 GQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAP 313 (674)
T ss_pred CHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCC
Confidence 25666666666554 1 14678999999999999876544
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-11 Score=124.52 Aligned_cols=68 Identities=26% Similarity=0.374 Sum_probs=54.4
Q ss_pred cCCCCCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH-H
Q 016712 117 RGISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE-K 191 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~-~ 191 (384)
.|| ++++-|.+.... +.+++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+. +
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHH
Confidence 366 599999985544 34567899999999999999999988643 3578999999999999994 4
Q ss_pred HHHH
Q 016712 192 EFHE 195 (384)
Q Consensus 192 ~~~~ 195 (384)
.+..
T Consensus 311 ~i~~ 314 (820)
T PRK07246 311 EVKA 314 (820)
T ss_pred HHHH
Confidence 4443
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=106.16 Aligned_cols=76 Identities=24% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCCcHHHHHHH----HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVL----EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 118 g~~~~~~~Q~~~i----~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+...++|.|.+.+ ..+..|+++++.+|||+|||++|++|++..+...... ..+.+++|.++|..+..|....+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHH
Confidence 3346899999944 4556789999999999999999999998776542111 02347999999999999987777
Q ss_pred HHh
Q 016712 194 HES 196 (384)
Q Consensus 194 ~~~ 196 (384)
++.
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 654
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=106.16 Aligned_cols=76 Identities=24% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCCcHHHHHHH----HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVL----EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 118 g~~~~~~~Q~~~i----~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+...++|.|.+.+ ..+..|+++++.+|||+|||++|++|++..+...... ..+.+++|.++|..+..|....+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHH
Confidence 3346899999944 4556789999999999999999999998776542111 02347999999999999987777
Q ss_pred HHh
Q 016712 194 HES 196 (384)
Q Consensus 194 ~~~ 196 (384)
++.
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 654
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=108.02 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=89.6
Q ss_pred HHHHHHHHHh-------------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 125 IQKAVLEPAM-------------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 125 ~Q~~~i~~i~-------------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
+|.+++.-+. ..+..+++-.+|.|||...+..+ ..+..... ......+|||+|. .+..||..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~---~~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALI-SYLKNEFP---QRGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHH-HHHHHCCT---TSS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhh-hhhhhccc---cccccceeEeecc-chhhhhhh
Confidence 5677766542 33578999999999999764443 33333110 0111249999999 88899999
Q ss_pred HHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc---cCCCCCCccEEEEeCcccccCCChHHHH
Q 016712 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (384)
Q Consensus 192 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~---~~~~~~~l~~vViDEah~~~~~~~~~~~ 266 (384)
++.++++ .+++..+.|...............+++|+|.+.+...... ..+.--++++||+||+|.+-+. ....
T Consensus 76 E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~ 153 (299)
T PF00176_consen 76 EIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKR 153 (299)
T ss_dssp HHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHH
T ss_pred hhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccc
Confidence 9999983 4665555555412222222233579999999988711000 0111134899999999998443 2233
Q ss_pred HHHHHHCCCCCcEEEEEccCCh
Q 016712 267 EVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 267 ~~il~~l~~~~q~l~~SAT~~~ 288 (384)
...+..+. ....+++||||-.
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccc-cceEEeecccccc
Confidence 33444455 6678889999743
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=119.56 Aligned_cols=128 Identities=24% Similarity=0.267 Sum_probs=98.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .+++.|...--.+..| .|..+.||.|||+++.+|++...+ .|.+|.|++|+.-||.|.++.+..+
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 375 5888998765555555 488999999999999999987664 4888999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCC------CCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNAL------NLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~------~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.++.+..+....+ .+||++||..-+ .++|..+.. ..+.+.++||||+|.++
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 86 56677777766555444333 389999998876 334433311 23789999999999876
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-11 Score=114.44 Aligned_cols=149 Identities=21% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g---~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++|+|+.++..+... ++-||+.|.|+|||++-+-++. .+ .+.||||+.+-.-+.||...|..+.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 4799999999998743 5789999999999997544332 22 5679999999999999999999876
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--------CCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--------ALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--------~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
. +-.+..++++... ....++.|+|+|..++..--++. .+.-..++++|+||+|.+...-|+..+.
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 3 2234445544321 23346899999998775433221 2234578999999999887765665554
Q ss_pred HHHHHCCCCCcEEEEEccCChhHH
Q 016712 268 VILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
.+-.. --+++|||+-.+-.
T Consensus 445 iv~aH-----cKLGLTATLvREDd 463 (776)
T KOG1123|consen 445 IVQAH-----CKLGLTATLVREDD 463 (776)
T ss_pred HHHHH-----hhccceeEEeeccc
Confidence 44332 26899999865533
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=119.47 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCCCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
|| +++|-|.+.+..+. +++.+++.||||+|||++|++|++.... ..+.+++|-++|+.|.+|+..
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~--------~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK--------KKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh--------ccCCeEEEEcCCHHHHHHHHH
Confidence 66 59999999665543 6688999999999999999999987653 246789999999999999865
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=106.94 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=115.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH-hCCCC
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSL 200 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~-~~~~~ 200 (384)
.+..+.+.++.+.+...++|+|.||+|||.= +| +.+++.....+ ....+++--|.|--|..++++... .+...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQ--vp--QfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQ--VP--QFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhh--hh--HHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 4677888889999989999999999999984 33 22333221111 456788888999888888877654 33322
Q ss_pred c--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCChHHHHHHHHHHCCCCC
Q 016712 201 D--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 201 ~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~~~~~~~~il~~l~~~~ 277 (384)
+ ++.-.+... .......+++||.|.|++.+.. ...+.++..||+||+|. =.+..|.-.+.+.+-..+++.
T Consensus 248 g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 2 111111110 1111268999999999999977 45688999999999994 334445555444444456899
Q ss_pred cEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
++|+||||+. .+....|+.....|.+.+
T Consensus 321 kvILMSAT~d---ae~fs~YF~~~pvi~i~g 348 (924)
T KOG0920|consen 321 KVILMSATLD---AELFSDYFGGCPVITIPG 348 (924)
T ss_pred eEEEeeeecc---hHHHHHHhCCCceEeecC
Confidence 9999999987 445666777666666543
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-10 Score=113.54 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=100.3
Q ss_pred EccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh--
Q 016712 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD-- 219 (384)
Q Consensus 142 ~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 219 (384)
.+-+|||||.+|+-.+-..+. .|.++|||+|...|..|+.+.|++.+++..+.+++++.+..+..+.+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~---------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR---------AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH---------cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH
Confidence 334699999999776666653 378899999999999999999999996567888998888776555443
Q ss_pred -cC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc--CC-ChH---HHHHHHHHHCCCCCcEEEEEccCChhHH
Q 016712 220 -YG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML--SV-GFA---EDVEVILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 220 -~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~--~~-~~~---~~~~~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
.| .+|+|||-..+ ...++++++|||||.|.-. +. +.+ .++... +.-..++.+|+-|||++-+..
T Consensus 237 ~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~-Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL-RAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH-HHHHcCCcEEEECCCCCHHHH
Confidence 34 79999995443 4568899999999999543 11 111 223222 223358899999999886665
Q ss_pred HHHHH
Q 016712 292 SLTNK 296 (384)
Q Consensus 292 ~~~~~ 296 (384)
..+..
T Consensus 309 ~~~~~ 313 (665)
T PRK14873 309 ALVES 313 (665)
T ss_pred HHHhc
Confidence 55443
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-10 Score=107.48 Aligned_cols=255 Identities=12% Similarity=-0.025 Sum_probs=165.8
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+..+--+....+|.+++..+.+|++.++...|.+||.++|.+.....+.. ......+++.|+.++++...+.+
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhhccCCce
Confidence 44455567889999999999999999999999999999999998877654 34456899999999998765443
Q ss_pred HHhCC---CCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC----CCCCccEEEEeCcccccCCChHH
Q 016712 194 HESAP---SLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL----NLSEVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 194 ~~~~~---~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~----~~~~l~~vViDEah~~~~~~~~~ 264 (384)
.-... ..+ ++-.+.+.+......-...+..++++.|..+......+.. .+-.+.++++||+|.+... |+.
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKA 430 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhh
Confidence 32211 111 2334555555555556667899999999988776654433 3345778999999987665 555
Q ss_pred HHHHHHHHC---------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc----hhh
Q 016712 265 DVEVILERL---------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN----MQK 331 (384)
Q Consensus 265 ~~~~il~~l---------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~----~~k 331 (384)
.....++++ ..+.|++-.|||+-.+++.+...+..+-+++... . ....+-++++++.+.. +.+
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~--D--GSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTI--D--GSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEe--c--CCCCccceEEEeCCCCCCcchhh
Confidence 544444443 3478999999999999998888776555544321 1 2234445555554422 111
Q ss_pred HHHH-------HHHHhHh---------HHHHHHH--------HHhhc----ceEEEecCCCChhhhhchhhhhhcCC
Q 016712 332 VENA-------LFSLKQN---------VMQTAWL--------MLWLK----VIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 332 ~~~l-------~~~~~~~---------~~~~~~~--------l~~~~----~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.+.. +..+..+ .-++++. |...+ -.+..|.||...++|+++..+.--|+
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 1111 1111100 0022221 11111 13678899999999999998877665
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-08 Score=97.37 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=134.0
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH-hCCC-
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS- 199 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~-~~~~- 199 (384)
-+++-.+.+.++....-++|.|.||||||. .+|= .+.+..- ...|+++-+--|.|.-|..+..+..+ .+-.
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQ--yL~EaGy---tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQ--YLYEAGY---TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccH--HHHhccc---ccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 455666777778777889999999999997 5663 3333211 12355588888999998888777655 2222
Q ss_pred ---CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCC-hHHHHHHHHHHCC
Q 016712 200 ---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVG-FAEDVEVILERLP 274 (384)
Q Consensus 200 ---~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~-~~~~~~~il~~l~ 274 (384)
++-.+-+.+.... ..-|=+.|-|+|+.-+... .++...++|||||||. -+... ...-++.| .+++
T Consensus 339 G~eVGYsIRFEdcTSe--------kTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDI-ar~R 408 (902)
T KOG0923|consen 339 GHEVGYSIRFEDCTSE--------KTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFR 408 (902)
T ss_pred ccccceEEEeccccCc--------ceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhC
Confidence 2222222222221 2467799999998776543 4588899999999994 22221 22223333 3446
Q ss_pred CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccc----------------cCCeEEEEEEeccchhhHHHHHHH
Q 016712 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL----------------ADGISLYSIATSMNMQKVENALFS 338 (384)
Q Consensus 275 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~----------------~~~i~~~~~~~~~~~~k~~~l~~~ 338 (384)
++..+++.|||+.-. -...|+.+.-+..+++. +.++ ...+.+....... .+.+++.
T Consensus 409 pdLKllIsSAT~DAe---kFS~fFDdapIF~iPGR-RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~----GDILVFl 480 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE---KFSAFFDDAPIFRIPGR-RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPL----GDILVFL 480 (902)
T ss_pred CcceEEeeccccCHH---HHHHhccCCcEEeccCc-ccceeeecccCCchhHHHHHHhhheeeEeccCC----ccEEEEe
Confidence 789999999998743 34556655444444322 1111 1111111111111 1222222
Q ss_pred Hh-HhHHHHHHHH----Hhh-----cceEEEecCCCChhhhhchhhhhhc
Q 016712 339 LK-QNVMQTAWLM----LWL-----KVIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 339 ~~-~~~~~~~~~l----~~~-----~~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
.. ++++...+.+ ..+ ++.+.++|+.|+.+.+.+|++--=+
T Consensus 481 tGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~ 530 (902)
T KOG0923|consen 481 TGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPP 530 (902)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCC
Confidence 11 2222222222 222 5679999999999999988875444
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=108.21 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=99.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|.-..-.++.|+ |....||.|||+++.+|++...+ .|.+|.|++|+.-||.|.++.+..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL---------~G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL---------QGRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH---------cCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 377 59999999998888875 78999999999999999987764 3788999999999999999999988
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHH-HHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~-~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.++.+..+.... ..+||++||...+- ++++.+. .....+.+.||||+|.++
T Consensus 143 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 143 YEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 76 5667777776655443333 35899999998763 3333221 124568899999999875
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=98.15 Aligned_cols=72 Identities=28% Similarity=0.332 Sum_probs=57.5
Q ss_pred CCCCCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.| .|...|-+||..+..| +.-.+.|-||||||+.. .-++..+ +.-+||++|.+-||-|.+.+
T Consensus 10 ~f-~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~-AnVI~~~-----------~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 10 PF-KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTM-ANVIAKV-----------QRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CC-CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHH-HHHHHHh-----------CCCeEEEecchhHHHHHHHH
Confidence 44 5899999999887765 57899999999999864 3344443 34499999999999999999
Q ss_pred HHHhCCCCce
Q 016712 193 FHESAPSLDT 202 (384)
Q Consensus 193 ~~~~~~~~~~ 202 (384)
|++++|+-.|
T Consensus 77 fk~fFP~NaV 86 (663)
T COG0556 77 FKEFFPENAV 86 (663)
T ss_pred HHHhCcCcce
Confidence 9999985443
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=103.08 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCCCCcHHHHHHHHHHh---CC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAM---QG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~---~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
|| +.++-|.+....+. .+ +.+++.|+||+|||++|++|++..... .+.+++|-+.|+.|-+|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--------~~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--------EKKKLVISTATVALQEQ 93 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--------cCCeEEEEcCCHHHHHH
Confidence 66 59999999766544 33 578899999999999999999876543 46789999999999999
Q ss_pred HH
Q 016712 189 VE 190 (384)
Q Consensus 189 ~~ 190 (384)
+.
T Consensus 94 L~ 95 (697)
T PRK11747 94 LV 95 (697)
T ss_pred HH
Confidence 85
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=107.94 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=101.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC----cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~----d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 172 (384)
+...|+.+.. .+++.++.-....+|+|+|+.|++..++|- .-=+.+..|+|||+.. +-+.+++.
T Consensus 138 s~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala---------- 205 (1518)
T COG4889 138 SPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALA---------- 205 (1518)
T ss_pred CCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHh----------
Confidence 3455655432 466666666677899999999999998762 2234456799999976 44455542
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCC--------------------hHH---HHH--HHhcCCCEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTP--------------------ISH---QMR--ALDYGVDAVV 226 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~--------------------~~~---~~~--~~~~~~~IlV 226 (384)
..++|+|+|+..|..|..+.+..-.. .+....+.++.. ... ... ....+--||+
T Consensus 206 ~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 206 AARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hhheEeecchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 36799999999999999988876431 233222222211 011 111 1123567999
Q ss_pred ECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 227 ~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
+|...+...-.....-+..+++||.||||+-...
T Consensus 286 sTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa 319 (1518)
T COG4889 286 STYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGA 319 (1518)
T ss_pred EcccchHHHHHHHHcCCCCccEEEecchhccccc
Confidence 9999887766655666889999999999987543
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-07 Score=93.99 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHHhC---C-------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC-----CEEEEEecCHHH
Q 016712 121 KLFPIQKAVLEPAMQ---G-------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN-----PLCLVLAPTREL 185 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~---g-------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~-----~~~lvl~Pt~~L 185 (384)
.++|+|++.+.-+.+ | ..+|+.-..|+|||+-. ++.+..++.. .++ .++|||+|. .|
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq------~P~~~~~~~k~lVV~P~-sL 309 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQ------FPQAKPLINKPLVVAPS-SL 309 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHh------CcCccccccccEEEccH-HH
Confidence 589999999875542 2 24677778999999965 5555555442 234 679999997 57
Q ss_pred HHHHHHHHHHhCC--CCceEEEECCCCh--HHHHHHHh-----cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 186 AKQVEKEFHESAP--SLDTICVYGGTPI--SHQMRALD-----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 186 a~q~~~~~~~~~~--~~~~~~~~g~~~~--~~~~~~~~-----~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
+.-|+++|.++.. .+....++|.... ......+. ...-|++-+.+.+.+.+. .+....++++|+||.|+
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCC
Confidence 7889999999864 4566667777653 11111111 124677888887765554 34466899999999999
Q ss_pred ccCCChHHHHHHHHHHCCCCCcEEEEEccC
Q 016712 257 MLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
+-+. ...+...+..+. ....|++|.|+
T Consensus 388 lkN~--~s~~~kaL~~l~-t~rRVLLSGTp 414 (776)
T KOG0390|consen 388 LKNS--DSLTLKALSSLK-TPRRVLLTGTP 414 (776)
T ss_pred ccch--hhHHHHHHHhcC-CCceEEeeCCc
Confidence 6543 223333444453 34467779997
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-08 Score=88.87 Aligned_cols=128 Identities=22% Similarity=0.274 Sum_probs=91.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+ .|++.|..++=.+..|+ |+...||-|||++..+|+....+ .|..|=|++.+..||..=++.+..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL---------~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL---------QGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT---------TSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH---------hcCCcEEEeccHHHhhccHHHHHHH
Confidence 466 59999999987777666 99999999999999888876653 3778999999999999888787776
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHH-HHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+..... .+||++||...+.- +++.+. .....+.++||||+|.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 54 67777788776654433333 46899999998754 443321 124678999999999765
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-08 Score=96.67 Aligned_cols=155 Identities=23% Similarity=0.254 Sum_probs=108.1
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+++||.+.++.+. .|-+.|+.-..|-|||+-. +..+-.+.... +..+--||++|.--|.+ |.++|+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-----~~~GPfLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-----GIPGPFLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-----CCCCCeEEEeeHhhHHH-HHHHHHHh
Confidence 58999999887654 5778999999999999843 34444332211 22233799999888755 99999999
Q ss_pred CCCCceEEEECCCChHHH-HHHH-h-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 197 APSLDTICVYGGTPISHQ-MRAL-D-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~-~~~~-~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
.|++++.+++|+...... .+.+ . ...+|+|+|.+..+.- ...+.--.++++||||+|++-+. ...+..+++.+
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 999999999998643322 1222 1 2579999999876543 12222336889999999998765 33455667776
Q ss_pred CCCCcEEEEEccCC
Q 016712 274 PQNRQSMMFSATMP 287 (384)
Q Consensus 274 ~~~~q~l~~SAT~~ 287 (384)
.. ...+++|.||-
T Consensus 316 ~~-~nrLLlTGTPL 328 (971)
T KOG0385|consen 316 KT-DNRLLLTGTPL 328 (971)
T ss_pred cc-cceeEeeCCcc
Confidence 54 34677788974
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-08 Score=103.22 Aligned_cols=150 Identities=19% Similarity=0.304 Sum_probs=112.2
Q ss_pred CCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-
Q 016712 121 KLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~- 198 (384)
...|+|.++++.+.+. .++++.+|+|||||.++-++++. .....+++++.|..+.+..+++.+.+.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~ 1212 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSK 1212 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhcc
Confidence 4589999999888755 57999999999999999888875 24567899999999999988888777553
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH------HHHHHH
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE------DVEVIL 270 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~------~~~~il 270 (384)
+..++.+.|..+..- .+....+|+|+||+++..+ . ....+++.|.||.|.+.+. ++. .+..|-
T Consensus 1213 ~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia 1283 (1674)
T KOG0951|consen 1213 LLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIA 1283 (1674)
T ss_pred ccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHH
Confidence 444444555443322 2333469999999998444 2 5678999999999987744 221 156667
Q ss_pred HHCCCCCcEEEEEccCChh
Q 016712 271 ERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 271 ~~l~~~~q~l~~SAT~~~~ 289 (384)
.++.++..++.+|..+.+.
T Consensus 1284 ~q~~k~ir~v~ls~~lana 1302 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANA 1302 (1674)
T ss_pred HHHHhheeEEEeehhhccc
Confidence 7777889999999887654
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.6e-07 Score=85.14 Aligned_cols=195 Identities=16% Similarity=0.121 Sum_probs=113.1
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|...+.++.-.+.|++.-----+..+.+.+..+...+-++++|.||||||. .+|-+..-.. . .....+.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~--~----~~~~~v~ 95 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYE--L----SHLTGVA 95 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHH--H----hhcccee
Confidence 345777788888888888753223455666667777778889999999999997 3443221111 0 1124477
Q ss_pred EEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-
Q 016712 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ- 256 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~- 256 (384)
.--|.+.-|.++..+..+-. ++..+.-.|..-..+... ..+.-+-++|-+.|++-.-.. -.+...+++|+||||.
T Consensus 96 CTQprrvaamsva~RVadEM-Dv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEM-DVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHER 171 (699)
T ss_pred ecCchHHHHHHHHHHHHHHh-ccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhh
Confidence 77899988888887766533 122111111110000000 000001134444444333222 2478899999999994
Q ss_pred ccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 257 MLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 257 ~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
-+.. -...-++.++..- ++..+|.||||+.. .....|+.++-.+.+++
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG 220 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCC
Confidence 2211 1222334444443 58999999999763 35677888888787764
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.1e-08 Score=100.23 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=94.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|.. |++.|.-..=.+. +..|..+.||.|||+++.+|++-..+ .|..|-|++++..||.+-++.+..+
T Consensus 73 lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred hCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHHH
Confidence 3774 8999987764444 45699999999999999999964432 3677999999999999988888876
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHH-HHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~-~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+. .....+||++||...+- ++++.+. .....+.+.||||+|.++
T Consensus 141 y~~LGLsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEER--KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHcCCceeeeCCCCChHHH--HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 54 5677777676655443 33445899999997653 3443332 124568999999999875
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=99.99 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=97.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+..+|.--+|||||++....+-..+ .. ...+.++||+-.++|-.|+.+.|..+........ ...+..+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~-~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLL-EL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHH-hc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHH
Confidence 4689999999999998655543333 21 4578899999999999999999999875433323 4445555566
Q ss_pred HHhcC-CCEEEECchhHHHHHHccC-CCCC-CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 217 ALDYG-VDAVVGTPGRVIDLIKRNA-LNLS-EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~-~~IlV~Tp~~l~~~l~~~~-~~~~-~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.+..+ ..|+|+|-.+|........ .... +==+||+||||+- .++.....+-..+ ++..+++||.||.-.
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTPi~~ 416 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTPIFK 416 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCcccc
Confidence 66655 4899999999987775541 1111 2226899999983 2444444444444 458899999998543
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=98.20 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|...--.+..| .|..+.||-|||+++.+|++-..+ .|..|-||+++..||..=.+.+..+
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL---------~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNAL---------TGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhh---------cCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 376 4888998776556555 489999999999999999886553 3777999999999999877777765
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-----HHHHHc--cCCCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-----IDLIKR--NALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-----~~~l~~--~~~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+ +.....+||++||+..| .+.+.. .......+.+.||||+|.++
T Consensus 150 y~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 54 677777766654433 34455799999999987 333321 12235678999999999875
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-06 Score=84.86 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=91.3
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-C--
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-P-- 198 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~-- 198 (384)
....+.+.+..+-...-++++|.||||||. .+|- .+... +-..++.+-+--|.|.-|..++++..+-. .
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~Q--yL~ed----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQ--YLYED----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHH--HHHhc----ccccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 345566666667677778999999999997 3442 23221 11234456667799999988888876633 2
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCC-hHHHHHHHHHHCC
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVG-FAEDVEVILERLP 274 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~-~~~~~~~il~~l~ 274 (384)
.++..+-+.+.... ...|-+.|-|.|+.-.... -.+....+||+||||. -++.. ....++..+++ +
T Consensus 429 G~~VGYsIRFEdvT~~--------~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-R 498 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSE--------DTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-R 498 (1042)
T ss_pred ccccceEEEeeecCCC--------ceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-h
Confidence 22222222222211 2468889999887654332 2367889999999994 22222 11122333332 3
Q ss_pred CCCcEEEEEccCCh
Q 016712 275 QNRQSMMFSATMPP 288 (384)
Q Consensus 275 ~~~q~l~~SAT~~~ 288 (384)
.+..+|++|||+.-
T Consensus 499 rdlKliVtSATm~a 512 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDA 512 (1042)
T ss_pred ccceEEEeeccccH
Confidence 57889999999863
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-07 Score=96.95 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=85.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH---------HhCCCCc--eEEEE
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---------ESAPSLD--TICVY 206 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~---------~~~~~~~--~~~~~ 206 (384)
++.+.++||+|||.+|+-.++..... ..-.+.||+||+.+.-..+.+.+. ..+.+.+ ..++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 78999999999999998887765433 234579999999998887776554 2232332 23333
Q ss_pred CCC-------ChHHHHHHHhc-------CCCEEEECchhHHHHHH-cc---------C-CCCCCc----cEEEEeCcccc
Q 016712 207 GGT-------PISHQMRALDY-------GVDAVVGTPGRVIDLIK-RN---------A-LNLSEV----QFVVLDEADQM 257 (384)
Q Consensus 207 g~~-------~~~~~~~~~~~-------~~~IlV~Tp~~l~~~l~-~~---------~-~~~~~l----~~vViDEah~~ 257 (384)
++. ......+.... ..+|+|.|-+.|..-.. .. . ..+..+ -.||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 332 11223233322 46899999888754221 00 0 111111 26899999998
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
...+ ...+.| ..+.+.+ ++.+|||.+.
T Consensus 214 ~~~~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRDN--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred Ccch--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 6532 233444 5565444 5779999987
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-07 Score=81.02 Aligned_cols=145 Identities=16% Similarity=0.222 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH-------HH
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE-------KE 192 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~-------~~ 192 (384)
...+..|..++..++...-+++.||.|+|||+.++..+++.+.+ +.-.+++|+-|..+..+++- +.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 34689999999999977789999999999999998888888755 34567888888876533221 11
Q ss_pred HHHhCCCCceEE-EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHH
Q 016712 193 FHESAPSLDTIC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (384)
Q Consensus 193 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~ 271 (384)
+.-+. .... .............+.....|-+..+..+ + ...+++ .+||||||+.+ -..+++.++.
T Consensus 76 ~~p~~---~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~----t~~~~k~ilT 141 (205)
T PF02562_consen 76 MEPYL---RPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNL----TPEELKMILT 141 (205)
T ss_dssp --TTT---HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHH---HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----c--Cccccc-eEEEEecccCC----CHHHHHHHHc
Confidence 11000 0000 0000001111222223345666654332 1 122333 78999999986 4568899999
Q ss_pred HCCCCCcEEEEEcc
Q 016712 272 RLPQNRQSMMFSAT 285 (384)
Q Consensus 272 ~l~~~~q~l~~SAT 285 (384)
++..++.++++--.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99999988887443
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-07 Score=96.05 Aligned_cols=70 Identities=27% Similarity=0.282 Sum_probs=56.7
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
....++++.|.+.+..+. .++.+++.||||+|||++|++|++..... .+..++|.++|+.|-.|+.+.
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--------~~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--------EGKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH--------cCCcEEEECCCHHHHHHHHHh
Confidence 344579999999986543 45569999999999999999999988754 357799999999999998655
Q ss_pred HH
Q 016712 193 FH 194 (384)
Q Consensus 193 ~~ 194 (384)
..
T Consensus 83 ~~ 84 (654)
T COG1199 83 DL 84 (654)
T ss_pred hc
Confidence 43
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-07 Score=92.65 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=104.8
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+.+||++++.-+. ++..-|+--..|-|||.- .+..+..+.... .....+|||||.. ++.||.++|..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~-----k~~~paLIVCP~T-ii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG-----KLTKPALIVCPAT-IIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc-----cccCceEEEccHH-HHHHHHHHHHHh
Confidence 57899999987654 455678888999999972 223333332211 1135699999986 668899999999
Q ss_pred CCCCceEEEECCCCh--------HHHHH-----HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 197 APSLDTICVYGGTPI--------SHQMR-----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~--------~~~~~-----~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
++.+.+.++++..+. ..... ....+.+|+|+|.+.+.- ....+.-..++++|+||.|++-+..
T Consensus 278 ~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn-- 353 (923)
T KOG0387|consen 278 WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN-- 353 (923)
T ss_pred CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCc--
Confidence 999999998877652 11111 112246899999776522 2223334568999999999987753
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 264 EDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.++......++ ..+.|++|.|+..+
T Consensus 354 s~islackki~-T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 354 SKISLACKKIR-TVHRIILSGTPIQN 378 (923)
T ss_pred cHHHHHHHhcc-ccceEEeeCccccc
Confidence 34455555664 46677779997543
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.3e-07 Score=95.04 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=58.7
Q ss_pred CCCCcHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 119 ISKLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
|..++|.|.+.+..+ ..+++.++.+|||+|||++.+.|++...... ...++++|.+.|..-..|..++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHHHH
Confidence 444599999887654 4678999999999999999999999876431 123689999999999999999988
Q ss_pred Hh
Q 016712 195 ES 196 (384)
Q Consensus 195 ~~ 196 (384)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.9e-06 Score=84.85 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.|+..|..+|..+.++ +..++.|-||||||+... .++..+ +..+|||+|+..+|.|++..|+.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~~~~-----------~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVIAQV-----------NRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 5999999999887544 367799999999998642 233322 34599999999999999999999
Q ss_pred hCCCCceEEE
Q 016712 196 SAPSLDTICV 205 (384)
Q Consensus 196 ~~~~~~~~~~ 205 (384)
++++-.+..+
T Consensus 77 f~p~~~V~~f 86 (655)
T TIGR00631 77 FFPENAVEYF 86 (655)
T ss_pred hCCCCeEEEE
Confidence 9875334333
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-07 Score=81.19 Aligned_cols=74 Identities=19% Similarity=0.348 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
++.+.|.+|+..++.... .+|.||+|+|||... ..++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999888 999999999999643 33444431100001124578899999999999999999888
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=92.37 Aligned_cols=213 Identities=13% Similarity=0.064 Sum_probs=127.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+-++=+|||.||||.-+ ++++.. .+..+|--|.+.||.++++++.+.+ +++..++|.......-.
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~---------aksGvycGPLrLLA~EV~~r~na~g--ipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS---------AKSGVYCGPLRLLAHEVYDRLNALG--IPCDLLTGEERRFVLDN 256 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh---------hccceecchHHHHHHHHHHHhhhcC--CCccccccceeeecCCC
Confidence 34566899999999854 455533 4558999999999999999999986 55555665422111100
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHH-HHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI-LERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~i-l~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
...++.+=||.++..- -..+++.||||++.|-+...+-.+..- +..........+ .+.+..+++
T Consensus 257 --~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~ 321 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVR 321 (700)
T ss_pred --CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHH
Confidence 1125677777665411 124788999999999887665555443 333233343333 244555555
Q ss_pred HhcC---CCeEEEecCCCcccccCCeEEE--EEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcce-EEEecCCCChhhh
Q 016712 296 KYLK---NPLTVDLVGDSDQKLADGISLY--SIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVI-IVSLCMGISHKAR 369 (384)
Q Consensus 296 ~~l~---~~~~i~~~~~~~~~~~~~i~~~--~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~-v~~~hg~m~~~eR 369 (384)
..+. +.++++.- ++ +..+... ....-.+-...+-+++..++.+-.+...+...|.. +++++|+++++.|
T Consensus 322 ~i~k~TGd~vev~~Y--eR---l~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr 396 (700)
T KOG0953|consen 322 KILKMTGDDVEVREY--ER---LSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETR 396 (700)
T ss_pred HHHhhcCCeeEEEee--cc---cCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchh
Confidence 5443 44554421 10 0000000 00000111222333444556666666666666554 9999999999999
Q ss_pred hchhhhhhc--CCcccC
Q 016712 370 GRGPFQLSE--MDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~--~~~~V~ 384 (384)
.+--..|.+ +|.||+
T Consensus 397 ~aQA~~FNd~~~e~dvl 413 (700)
T KOG0953|consen 397 LAQAALFNDPSNECDVL 413 (700)
T ss_pred HHHHHHhCCCCCccceE
Confidence 999999998 888874
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.5e-07 Score=91.24 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=106.7
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.|+. +-+||.-.++.+. .+.+.|+.-..|-|||.- +++.+..+.+. +..+.-|||||.--|-+ |.++
T Consensus 396 s~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~------g~~gpHLVVvPsSTleN-WlrE 466 (941)
T KOG0389|consen 396 SGIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI------GNPGPHLVVVPSSTLEN-WLRE 466 (941)
T ss_pred CCCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc------CCCCCcEEEecchhHHH-HHHH
Confidence 3554 8899998887643 567889999999999963 34444444331 22334799999987754 9999
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHh-c---CCCEEEECchhHHHHHH-ccCCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALD-Y---GVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~---~~~IlV~Tp~~l~~~l~-~~~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
|.+++|.+.+..+||......+.+... . +.+|+++|......--. +..+.-.++.++|+||.|.+-+.+ ...+.
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~ 545 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYK 545 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHH
Confidence 999999999999999876655554432 2 48999999765532111 112223468899999999765542 22233
Q ss_pred HHHHHCCCCCcEEEEEccCC
Q 016712 268 VILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~ 287 (384)
.++. ++ ..+.|++|.||=
T Consensus 546 ~LM~-I~-An~RlLLTGTPL 563 (941)
T KOG0389|consen 546 HLMS-IN-ANFRLLLTGTPL 563 (941)
T ss_pred Hhcc-cc-ccceEEeeCCcc
Confidence 3332 22 456788899973
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-05 Score=75.98 Aligned_cols=213 Identities=20% Similarity=0.215 Sum_probs=138.9
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCC-CceE------EEEC--------------CCChHHHHHHH-----------
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPS-LDTI------CVYG--------------GTPISHQMRAL----------- 218 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~-~~~~------~~~g--------------~~~~~~~~~~~----------- 218 (384)
-..|+||||+|+|.-|.++.+.+-++.+. ..+. .-+| ..........+
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 35789999999999999999888776643 1100 0111 00011111111
Q ss_pred --------------hcCCCEEEECchhHHHHHHc------cCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC---CC
Q 016712 219 --------------DYGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQ 275 (384)
Q Consensus 219 --------------~~~~~IlV~Tp~~l~~~l~~------~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l---~~ 275 (384)
..++||||++|=-|...+.. ..-.++.+.++|||.+|.++..+ ...+..+++.+ |+
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCC
Confidence 12479999999999887764 23357889999999999877663 45566666655 22
Q ss_pred ---------------------CCcEEEEEccCChhHHHHHHHhcCCCe-EEEecCCCc-----ccccCCeEEEEEEeccc
Q 016712 276 ---------------------NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSD-----QKLADGISLYSIATSMN 328 (384)
Q Consensus 276 ---------------------~~q~l~~SAT~~~~~~~~~~~~l~~~~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~ 328 (384)
-+|+|++|+...+++..+....+.|.. .+.+..... ..+...+.|.....+..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 169999999999999999999777643 333322222 24445566666543322
Q ss_pred ------hhhHHHHHHHHhHhH-------------------HHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 329 ------MQKVENALFSLKQNV-------------------MQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 329 ------~~k~~~l~~~~~~~~-------------------~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.+.......+.... -++-..|...++..+.+|=-.+..+-.++-..|.+|+..|
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 122221111111111 1666777778999999999999999999999999999876
Q ss_pred C
Q 016712 384 Y 384 (384)
Q Consensus 384 ~ 384 (384)
+
T Consensus 354 L 354 (442)
T PF06862_consen 354 L 354 (442)
T ss_pred E
Confidence 4
|
; GO: 0005634 nucleus |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=76.76 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
++++-|.+++..++... -.++.|+.|+|||.+ +..+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHhhC----
Confidence 47899999999996543 477889999999984 3444444433 36789999999999887665521
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc---C----CCCCCccEEEEeCcccccCCChHHHHHHHHH
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---A----LNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~---~----~~~~~l~~vViDEah~~~~~~~~~~~~~il~ 271 (384)
.. ..| +..++... . ..+...++|||||+-.+.. ..+..++.
T Consensus 68 -~~------------------------a~T---i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~ 115 (196)
T PF13604_consen 68 -IE------------------------AQT---IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLR 115 (196)
T ss_dssp -S-------------------------EEE---HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHH
T ss_pred -cc------------------------hhh---HHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHH
Confidence 11 111 11111111 0 1145667999999997533 46677777
Q ss_pred HCCC-CCcEEEEEcc
Q 016712 272 RLPQ-NRQSMMFSAT 285 (384)
Q Consensus 272 ~l~~-~~q~l~~SAT 285 (384)
..+. +.++|++-=+
T Consensus 116 ~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 116 LAKKSGAKLILVGDP 130 (196)
T ss_dssp HS-T-T-EEEEEE-T
T ss_pred HHHhcCCEEEEECCc
Confidence 7766 6677776443
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-06 Score=89.57 Aligned_cols=164 Identities=20% Similarity=0.176 Sum_probs=94.5
Q ss_pred CcHHHHHHHHHHhC--------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQ--------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~--------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
-+.+|-.|++.+.. |--+|-.|.||+|||++= .-++..+.+ ...|.+..|-.-.|.|-.|.-+.+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd------~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD------DKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC------CCCCceEEEEccccceeccchHHH
Confidence 46799999987663 224666799999999964 333444422 234567777777777777766666
Q ss_pred HHhCC--CCceEEEECCC-------------------------------------------ChHHHHHHHhc--------
Q 016712 194 HESAP--SLDTICVYGGT-------------------------------------------PISHQMRALDY-------- 220 (384)
Q Consensus 194 ~~~~~--~~~~~~~~g~~-------------------------------------------~~~~~~~~~~~-------- 220 (384)
++... +-...++.|+. ........+.+
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 55321 11112222221 11100111110
Q ss_pred CCCEEEECchhHHHHHHc--c-CCCCC--C--ccEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHH
Q 016712 221 GVDAVVGTPGRVIDLIKR--N-ALNLS--E--VQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 221 ~~~IlV~Tp~~l~~~l~~--~-~~~~~--~--l~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~ 292 (384)
...|+|||++.++..... . ...+. . =+.|||||+|.+... ....+..++..+. -...+++||||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 268999999998876622 1 11111 1 246999999975433 2333444444322 368899999999998654
Q ss_pred H
Q 016712 293 L 293 (384)
Q Consensus 293 ~ 293 (384)
.
T Consensus 641 ~ 641 (1110)
T TIGR02562 641 T 641 (1110)
T ss_pred H
Confidence 3
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=85.87 Aligned_cols=144 Identities=18% Similarity=0.220 Sum_probs=84.4
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCC-CCCEEEEEecCHHHHHHHHHHHHH-h---CCCCceEE
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG-RNPLCLVLAPTRELAKQVEKEFHE-S---APSLDTIC 204 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~-~~~~~lvl~Pt~~La~q~~~~~~~-~---~~~~~~~~ 204 (384)
++.|...--+||||.||||||. .+|-+ +.+..-..... .+.-+=|--|.|.-|..+.++... + +..+...+
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTT--QvPQF--LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTT--QVPQF--LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccc--cchHH--HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 3444444568999999999997 56633 33322211111 233566777888777766655443 2 22233333
Q ss_pred EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc-CC----ChHHHHHHHHHHCCC----
Q 016712 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SV----GFAEDVEVILERLPQ---- 275 (384)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~-~~----~~~~~~~~il~~l~~---- 275 (384)
-+.++- .....|.+.|-|-|+.-+.+.. .+.....|||||||.=. .. |....+-.+-..+..
T Consensus 341 Rfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred Eecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 333322 2236899999999988887654 47889999999999522 11 111111111112222
Q ss_pred --CCcEEEEEccC
Q 016712 276 --NRQSMMFSATM 286 (384)
Q Consensus 276 --~~q~l~~SAT~ 286 (384)
....|+||||+
T Consensus 412 ~kpLKLIIMSATL 424 (1172)
T KOG0926|consen 412 IKPLKLIIMSATL 424 (1172)
T ss_pred cCceeEEEEeeeE
Confidence 45699999997
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.7e-05 Score=70.07 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH-------H
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-------E 190 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~-------~ 190 (384)
++...+..|...+..+.+...+++.|++|+|||+.+....+..+.. +.-.++++.-|+.+....+ .
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 5666788999999999888889999999999999887777766543 1233455555655432211 1
Q ss_pred HHHHHh----CCCCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHH
Q 016712 191 KEFHES----APSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265 (384)
Q Consensus 191 ~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~ 265 (384)
+.+..+ +..+.. +.+. ......+. ..-.|-|... .+++... +. -++||||||+.+. ..+
T Consensus 129 eK~~p~~~pi~D~L~~--~~~~---~~~~~~~~~~~~~Iei~~l----~ymRGrt--l~-~~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR--RLGA---SFMQYCLRPEIGKVEIAPF----AYMRGRT--FE-NAVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHHHHHH--HhCh---HHHHHHHHhccCcEEEecH----HHhcCCc--cc-CCEEEEechhcCC----HHH
Confidence 111111 100100 0111 11111111 1124445442 3333222 32 3799999999763 367
Q ss_pred HHHHHHHCCCCCcEEEE
Q 016712 266 VEVILERLPQNRQSMMF 282 (384)
Q Consensus 266 ~~~il~~l~~~~q~l~~ 282 (384)
++.++.++..+..+|+.
T Consensus 193 ~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 193 MKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHhhcCCCCEEEEe
Confidence 88899999988888875
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-06 Score=87.38 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++.||...++.+. +.-|-|+.-..|-|||.- .+.++.++....... | --||||||-.+.+ |.-+|+++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnW----G-PHLIVVpTsviLn-WEMElKRw 687 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNW----G-PHLIVVPTSVILN-WEMELKRW 687 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCC----C-CceEEeechhhhh-hhHHHhhh
Confidence 35778888776543 234789999999999974 466666665432221 2 2689999977655 88899999
Q ss_pred CCCCceEEEECCCChHH-HHHHHhc--CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 197 APSLDTICVYGGTPISH-QMRALDY--GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~-~~~~~~~--~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
++++++..++|...... ....|.+ .-||.|++...+..-+. .+.-+++.|+|+||+|++-++ -...++.++..
T Consensus 688 cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnf-ksqrWQAllnf- 763 (1958)
T KOG0391|consen 688 CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNF-KSQRWQALLNF- 763 (1958)
T ss_pred CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcch-hHHHHHHHhcc-
Confidence 99999999999754332 3334443 25888888766544332 233457899999999998765 23345555543
Q ss_pred CCCCcEEEEEccCCh
Q 016712 274 PQNRQSMMFSATMPP 288 (384)
Q Consensus 274 ~~~~q~l~~SAT~~~ 288 (384)
...+.++++.|+-.
T Consensus 764 -nsqrRLLLtgTPLq 777 (1958)
T KOG0391|consen 764 -NSQRRLLLTGTPLQ 777 (1958)
T ss_pred -chhheeeecCCchh
Confidence 24667888888643
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=83.18 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=96.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ 216 (384)
-.++.+|.|+|||.+..-++-..+ . ..+.++|+|+..+.|+.+....|+..+ .++....-.++....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l-~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~---- 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDAL-K-------NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIID---- 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhc-c-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccccc----
Confidence 368899999999986544433322 1 246789999999999999999998764 122211111111000
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHH-------HHHHHHHCCCCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED-------VEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~-------~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
....+-+++..++|.... ...+++.++|||||+-..+..-|.+. +..+...+.....+|++-||+...
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 012467788878775543 22466789999999987765533222 222333455677899999999999
Q ss_pred HHHHHHHhcCC
Q 016712 290 IRSLTNKYLKN 300 (384)
Q Consensus 290 ~~~~~~~~l~~ 300 (384)
+-+++..+-.+
T Consensus 194 tvdFl~~~Rp~ 204 (824)
T PF02399_consen 194 TVDFLASCRPD 204 (824)
T ss_pred HHHHHHHhCCC
Confidence 99998886543
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-06 Score=85.78 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .|++.|.-.-=.+..|+ |....||-|||+++.+|++-..+ .|..|-|++..--||..=.+.+..++
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHHHH
Confidence 76 58999988776666664 89999999999999999865443 36779999999999986666666554
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
. ++.+.+...+.+..+. .-...+||++||...| .++|+.+. .....+.+.||||+|.++
T Consensus 144 ~fLGLsvG~i~~~~~~~~r--r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLK--REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHhCCceeeeCCCCChHHH--HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 3 5677777665554443 3344689999999876 34454332 124678899999999875
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.7e-06 Score=84.39 Aligned_cols=163 Identities=22% Similarity=0.224 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC-CCEEEEEecCHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR-NPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~-~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.+-|+|..++..+.-. ..-|+....|-|||++.+-.+++.-........... ...+|||||- .|+.||+.++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 4678999998766532 357888999999999765444443322222211111 1259999996 57889999988
Q ss_pred HhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHH----HHHccC--CCCC--CccEEEEeCcccccCCChHH
Q 016712 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID----LIKRNA--LNLS--EVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~----~l~~~~--~~~~--~l~~vViDEah~~~~~~~~~ 264 (384)
.... .+.|.+++|.....-..+.+ ...||||+|..-+.. -..... ..+- .+..||+||||.+-+.. .
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~--t 480 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN--T 480 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc--h
Confidence 7653 35666677765422222233 348999999865544 111110 0111 35689999999876642 2
Q ss_pred HHHHHHHHCCCCCcEEEEEccCCh
Q 016712 265 DVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 265 ~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
+-..-+..|...+ .-++|+|+..
T Consensus 481 q~S~AVC~L~a~~-RWclTGTPiq 503 (901)
T KOG4439|consen 481 QCSKAVCKLSAKS-RWCLTGTPIQ 503 (901)
T ss_pred hHHHHHHHHhhcc-eeecccCccc
Confidence 2222333443333 3455777643
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00015 Score=75.77 Aligned_cols=75 Identities=27% Similarity=0.315 Sum_probs=56.5
Q ss_pred CCCCCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.| .|++.|..++..+.++ +..++.|.+|+|||+... .++... +..+|||+|+...|.|+++.
T Consensus 10 ~~-~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 10 PY-KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CC-CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHH
Confidence 44 5999999999887543 257899999999998642 233221 34599999999999999999
Q ss_pred HHHhCCCCceEEE
Q 016712 193 FHESAPSLDTICV 205 (384)
Q Consensus 193 ~~~~~~~~~~~~~ 205 (384)
++.++++-.+..+
T Consensus 77 L~~~~~~~~v~~f 89 (652)
T PRK05298 77 FKEFFPENAVEYF 89 (652)
T ss_pred HHHhcCCCeEEEe
Confidence 9998765434333
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.1e-05 Score=70.93 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=133.0
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC----------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC
Q 016712 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (384)
Q Consensus 103 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 172 (384)
.+.|++.++. .| .++..|.+++-...+ +.-.++--.||.||.-...--++..... .
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------G 90 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------G 90 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------C
Confidence 3456665553 34 479999999865542 2346666679999877544445555533 2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCC-CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc---CCCC-----
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---ALNL----- 243 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~---~~~~----- 243 (384)
..++|+++.+..|-.+..+.++..+.. +.+..+..-. .. .. ..-.-.|+++|...|...-..+ ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~-~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFK-YG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCCcccceechhhc-cC-cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 456999999999999999999988742 2222221110 00 00 1113479999998876654211 1111
Q ss_pred ---CC-ccEEEEeCcccccCCC--------hHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCc
Q 016712 244 ---SE-VQFVVLDEADQMLSVG--------FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311 (384)
Q Consensus 244 ---~~-l~~vViDEah~~~~~~--------~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 311 (384)
.+ =++||+||||.+-+.. -+..+..+.+++| +.+++.+|||-..+.++|. |+ ..+.+-+. .
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~Nma--Ym---~RLGLWG~-g 239 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRNMA--YM---SRLGLWGP-G 239 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCceee--ee---eeccccCC-C
Confidence 11 2489999999886542 2245555666775 5669999999877766653 22 11111110 0
Q ss_pred ccccCCeEEEEEEecc-chhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhh
Q 016712 312 QKLADGISLYSIATSM-NMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKAR 369 (384)
Q Consensus 312 ~~~~~~i~~~~~~~~~-~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR 369 (384)
.+. .....+....+. ...-.|.+-..+.....-++..+...|+.....+-.|++++.
T Consensus 240 tpf-~~~~~f~~a~~~gGv~amE~vA~dlKa~G~yiaR~LSf~gvef~~~e~~l~~~~~ 297 (303)
T PF13872_consen 240 TPF-PDFDDFLEAMEKGGVGAMEMVAMDLKARGMYIARQLSFEGVEFEIEEVPLTPEQI 297 (303)
T ss_pred CCC-CCHHHHHHHHHhcCchHHHHHHHHHHhcchheeeecccCCceEEEEEecCCHHHH
Confidence 000 000000000000 001112222223344444555556668888888889988764
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=78.11 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 120 SKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+-|+|.+.+... .+|..+++.-..|-|||+-++.-+..... ..-.||+||.. +-..|.+.+..+++
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra----------EwplliVcPAs-vrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA----------EWPLLIVCPAS-VRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh----------cCcEEEEecHH-HhHHHHHHHHHhcc
Confidence 35689999988765 46778889999999999966433332221 22378889974 55678999999887
Q ss_pred CCc-eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCC
Q 016712 199 SLD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 199 ~~~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~ 277 (384)
.+. +.++.++.+.-.. +-....|.|.+.+.+..+-. .+.-...++||+||.|++-+. -....+.++..+..-.
T Consensus 266 s~~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 266 SIHPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAK 339 (689)
T ss_pred cccceEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhh
Confidence 543 3444444322111 11124688888887644322 233445889999999976554 3334555555555567
Q ss_pred cEEEEEccC
Q 016712 278 QSMMFSATM 286 (384)
Q Consensus 278 q~l~~SAT~ 286 (384)
.+|++|.|+
T Consensus 340 hvILLSGTP 348 (689)
T KOG1000|consen 340 HVILLSGTP 348 (689)
T ss_pred heEEecCCc
Confidence 799999997
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.9e-06 Score=78.74 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=68.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ 216 (384)
-++|.|..|||||++++ -++..+.. ...+..++++++...|...+.+.+.... +..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~---------------- 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYNPKL---------------- 59 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhc------cccCCceEEEEecchHHHHHHHHHhhhcccch----------------
Confidence 36889999999999763 33333311 1346779999999999998888887644 100
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-------hHHHHHHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-------FAEDVEVILER 272 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-------~~~~~~~il~~ 272 (384)
....+..+..+...+........+.++|||||||++...+ ....+..+++.
T Consensus 60 -----~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 -----KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1222333333333222223446789999999999998731 24566677666
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-06 Score=91.06 Aligned_cols=152 Identities=21% Similarity=0.315 Sum_probs=107.4
Q ss_pred CcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC--C
Q 016712 122 LFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~--~ 198 (384)
..|.|.+.+..+.. +.+.++-+|||+|||++|.+.++..+.. .++.+++||+|.++|+..-.+.+.... +
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccC
Confidence 34555554433322 3578999999999999999999988755 456789999999999998877777654 3
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--CCCCCCccEEEEeCcccccCCChHHHHHHHHHHC---
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l--- 273 (384)
+++++.+.|+.... ...+. .++++|+||++.....++| .-.+.+++.+|+||.|++.+. +++.++.+....
T Consensus 1001 g~k~ie~tgd~~pd--~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCC--hhhee-cCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 67777777776554 22222 3799999999998877754 335789999999999976554 555554443333
Q ss_pred ----CCCCcEEEEEc
Q 016712 274 ----PQNRQSMMFSA 284 (384)
Q Consensus 274 ----~~~~q~l~~SA 284 (384)
++.++.+++|-
T Consensus 1077 s~~t~~~vr~~glst 1091 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLST 1091 (1230)
T ss_pred ccccCcchhhhhHhh
Confidence 23455666543
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-05 Score=84.06 Aligned_cols=167 Identities=18% Similarity=0.146 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHh--C--CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM--Q--GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~--~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++.||++.++.+. . +=+-|+|-+.|-|||+-.+.-+......++.........-.|||||.. |+-.|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHHHHh
Confidence 35789999887643 2 237899999999999954333322222221122222334489999985 788899999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
++.+++....|+...+...+.-.++.+|+|++.+.+..-+.. +.-.++.|+|+||-|-|-+. ...+.+..+.+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 998888888887665555555555689999998776533211 11235779999999976553 34445555666544
Q ss_pred CcEEEEEccCCh-hHHHH
Q 016712 277 RQSMMFSATMPP-WIRSL 293 (384)
Q Consensus 277 ~q~l~~SAT~~~-~~~~~ 293 (384)
. .+.+|.||.. ++.++
T Consensus 1130 h-RLILSGTPIQNnvleL 1146 (1549)
T KOG0392|consen 1130 H-RLILSGTPIQNNVLEL 1146 (1549)
T ss_pred c-eEEeeCCCcccCHHHH
Confidence 4 5566999743 34443
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=83.48 Aligned_cols=158 Identities=19% Similarity=0.264 Sum_probs=105.2
Q ss_pred CCCcHHHHHHHHHH----hCCCcEEEEccCCCchhHH---HHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLA---FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~---~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
..++.+|.+.++-+ ..+.++|+.-..|-|||+- |+-.+++.. ...|| .||++|.--+. -|.++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~--------~~~gp-flvvvplst~~-~W~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL--------QIHGP-FLVVVPLSTIT-AWERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh--------hccCC-eEEEeehhhhH-HHHHH
Confidence 57999999988764 4678999999999999973 333333322 12344 68888876554 48889
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHhc---------CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALDY---------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
|..+. ++++++++|.....+.++...- ..+++++|.+.++.-.. .+.--.+.+++|||||++-+. .
T Consensus 439 f~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~ 513 (1373)
T KOG0384|consen 439 FETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--E 513 (1373)
T ss_pred HHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--H
Confidence 99988 8999999999887776665532 26899999887654221 111224679999999998754 2
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCC-hhHHHH
Q 016712 264 EDVEVILERLPQNRQSMMFSATMP-PWIRSL 293 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~-~~~~~~ 293 (384)
..+...+..+.-+. .+++|.||- +.+.++
T Consensus 514 ~~l~~~l~~f~~~~-rllitgTPlQNsikEL 543 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNH-RLLITGTPLQNSLKEL 543 (1373)
T ss_pred HHHHHHHHHhcccc-eeeecCCCccccHHHH
Confidence 22333355554444 455677763 344444
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=75.89 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=86.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~ 201 (384)
..++|+.|+...+..+-.+|.|++|+|||.+. .-++..+... ......++++.+||..-|..+.+.+......+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~----~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQL----ADGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHh----cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 35899999999999899999999999999853 3333333221 011245788999999999888887766443332
Q ss_pred eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH------ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC
Q 016712 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (384)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~------~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~ 275 (384)
.. ... ......-..|-.+++.... .+.-+.-.+++|||||+-++ + ...+..+++.+++
T Consensus 228 ~~--------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~ 291 (615)
T PRK10875 228 LT--------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPP 291 (615)
T ss_pred cc--------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhccc
Confidence 10 000 0000111222222221110 11112234689999999854 3 3456778888999
Q ss_pred CCcEEEEEcc
Q 016712 276 NRQSMMFSAT 285 (384)
Q Consensus 276 ~~q~l~~SAT 285 (384)
++++|++-=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 9888887543
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.4e-05 Score=77.24 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
..+++.|..|+..++.. ...+|.||+|+|||.... .++..+.. .+.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~--------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK--------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH--------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 35799999999998876 678899999999998653 33333332 3568999999999999998888763
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-05 Score=73.28 Aligned_cols=127 Identities=25% Similarity=0.255 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHhCCC-----cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQGR-----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~-----d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.+-|+|.+.+..+.... .-|+.-..|.|||.-.+.-++.. -.+..+||++|+.+|. ||.+++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----------~~ra~tLVvaP~VAlm-QW~nEI~~ 252 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----------VDRAPTLVVAPTVALM-QWKNEIER 252 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----------cccCCeeEEccHHHHH-HHHHHHHH
Confidence 47899999886655432 35778889999998654443332 2355699999999885 68888888
Q ss_pred hCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-------------CCC--CccEEEEeCcccccC
Q 016712 196 SAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-------------NLS--EVQFVVLDEADQMLS 259 (384)
Q Consensus 196 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-------------~~~--~l~~vViDEah~~~~ 259 (384)
... .+++.+++|...... .+.+. +.|++.+|...+-...+.... .+. ++-.||+||||.+-+
T Consensus 253 ~T~gslkv~~YhG~~R~~n-ikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 253 HTSGSLKVYIYHGAKRDKN-IKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD 330 (791)
T ss_pred hccCceEEEEEecccccCC-HHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccc
Confidence 765 456666666544332 23333 479999999888776644211 122 245699999998865
Q ss_pred C
Q 016712 260 V 260 (384)
Q Consensus 260 ~ 260 (384)
.
T Consensus 331 R 331 (791)
T KOG1002|consen 331 R 331 (791)
T ss_pred c
Confidence 4
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=83.19 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=88.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
.+++.|.-.=-.+.+|+ |..+.||-|||+++.+|++-..+. |..|-|++-.--||..=.+.+..++.
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~---------G~gVHvVTvNDYLA~RDaewm~p~y~fl 206 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT---------GRGVHVVTVNDYLAQRDKEWMNPVFEFH 206 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc---------CCCcEEEeechHhhhhhHHHHHHHHHHh
Confidence 47788876655555555 889999999999999999766543 56688889999999865555555432
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
++.+.|+..+.+.. .+.-...+||++||..-| .++|+.+. .....+.+.||||+|.++
T Consensus 207 GLtVg~i~~~~~~~--~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 207 GLSVGVILNTMRPE--ERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CCeeeeeCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 67788776554433 344556789999998766 34443331 124668899999999875
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=76.17 Aligned_cols=133 Identities=24% Similarity=0.251 Sum_probs=80.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++ .+++.|.+|+..+..++-+++.|+.|+|||.+. ..++..+... +....+++++||-.-|..+.+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~~--- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGEVT--- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHHhc---
Confidence 455 699999999999998889999999999999853 3444443221 11156888999988776543321
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+... .+ ..+.+....+ ..... ..-.....++|||||++++.. ..+..+++.++..
T Consensus 389 --g~~a------~T---ih~lL~~~~~-------~~~~~---~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 389 --GLTA------ST---IHRLLGYGPD-------TFRHN---HLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDH 443 (720)
T ss_pred --CCcc------cc---HHHHhhccCC-------ccchh---hhhccccCCEEEEeccccCCH----HHHHHHHHhCCCC
Confidence 1110 00 0001110000 00000 000123578999999996533 3457777888888
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
.++|++-=+
T Consensus 444 ~rlilvGD~ 452 (720)
T TIGR01448 444 ARLLLVGDT 452 (720)
T ss_pred CEEEEECcc
Confidence 888887433
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=74.16 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCce
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~ 202 (384)
.++|+.|+..++..+-.++.|+.|+|||.+. ..++..+...... ..+.++++.+||-.-+..+.+.+......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 4899999999999999999999999999853 3333333221110 11357999999998888877776654432221
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH------ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~------~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
. ... .....+-..|-.+++.... ...-+.-.+++|||||+-++ + ...+..+++.++++
T Consensus 223 ~--------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 A--------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALPPN 286 (586)
T ss_pred c--------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcCCC
Confidence 0 000 0001111233322222111 01112335799999999854 3 23567788889888
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
.++|++-=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888887433
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.4e-05 Score=75.85 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=62.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.+...|+.++..-|..|+.+++...=.||+||+|+|||....--+++ +.. .....+||.+|+..-+.|+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyh-l~~-------~~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYH-LAR-------QHAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHH-HHH-------hcCCceEEEcccchhHHHHHHH
Confidence 45556888999999999999999999999999999999976444444 433 2466799999999999999988
Q ss_pred HHHhC
Q 016712 193 FHESA 197 (384)
Q Consensus 193 ~~~~~ 197 (384)
+.+.+
T Consensus 474 Ih~tg 478 (935)
T KOG1802|consen 474 IHKTG 478 (935)
T ss_pred HHhcC
Confidence 88754
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.4e-05 Score=74.40 Aligned_cols=65 Identities=26% Similarity=0.297 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.+.+-|..|+......++ .++.||+|+|||..-..-+.+.+. .+.++||..||.+-+.-+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk---------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK---------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH---------cCCeEEEEcCchHHHHHHHHHhc
Confidence 577889999998887755 688999999999976555555553 37899999999999988887644
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.1e-05 Score=75.09 Aligned_cols=157 Identities=22% Similarity=0.258 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++-.||...++.+. +|-|-|+.-..|-|||.-. +.++.++.+...- -|| -||++|.-.|- -|..++.++
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nI----wGP-FLVVtpaStL~-NWaqEisrF 639 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNI----WGP-FLVVTPASTLH-NWAQEISRF 639 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccC----CCc-eEEeehHHHHh-HHHHHHHHh
Confidence 46678888776543 5778999999999999854 5666666543221 133 68889987764 488999999
Q ss_pred CCCCceEEEECCCChHHHHHHH---------hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 197 APSLDTICVYGGTPISHQMRAL---------DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~---------~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
.|.+++.-+.|+.......+.. ..+.||+|++...+..-- ..+.--.+.++|+|||+.+-.. ....++
T Consensus 640 lP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe--ky~qkvKWQYMILDEAQAIKSS-sS~RWK 716 (1185)
T KOG0388|consen 640 LPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE--KYLQKVKWQYMILDEAQAIKSS-SSSRWK 716 (1185)
T ss_pred CccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH--HHHHhhhhhheehhHHHHhhhh-hhhHHH
Confidence 9999998888987766555542 235799999976553211 1111224679999999987654 344455
Q ss_pred HHHHHCCCCCcEEEEEccCChh
Q 016712 268 VILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.++.. +.+-.+++|.|+...
T Consensus 717 tLLsF--~cRNRLLLTGTPIQN 736 (1185)
T KOG0388|consen 717 TLLSF--KCRNRLLLTGTPIQN 736 (1185)
T ss_pred HHhhh--hccceeeecCCccch
Confidence 56554 245578999998765
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00052 Score=61.46 Aligned_cols=149 Identities=19% Similarity=0.320 Sum_probs=93.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
.|.....|..++=+++ .++ -.++.|.+....+.+ |+|.+.+.-.|.|||-+ ++|++..+.. +....+
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA-------dg~~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA-------DGSRLV 73 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-------CCCcEE
Confidence 3555555666665554 366 489999999988875 57999999999999986 5888877765 223455
Q ss_pred EEEecCHHHHHHHHHHHHHhCCCC---ceEE--EECCCChH-H---HH----HHHhcCCCEEEECchhHHHHHHcc----
Q 016712 177 LVLAPTRELAKQVEKEFHESAPSL---DTIC--VYGGTPIS-H---QM----RALDYGVDAVVGTPGRVIDLIKRN---- 239 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~~~---~~~~--~~g~~~~~-~---~~----~~~~~~~~IlV~Tp~~l~~~l~~~---- 239 (384)
.+++| ++|..|....+...+.++ ++.. +....... . .. +.....-.|+++||+.++++...+
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 56666 568899988888755322 2221 22222211 1 11 122234689999999887654221
Q ss_pred ---CC-----------CCCCccEEEEeCcccccC
Q 016712 240 ---AL-----------NLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 240 ---~~-----------~~~~l~~vViDEah~~~~ 259 (384)
.. ++.+-..=|+||+|..+.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 123344457888887654
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.9e-05 Score=80.47 Aligned_cols=126 Identities=23% Similarity=0.279 Sum_probs=85.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
.+++.|.-.=-.+..| -|..+.||-|||+++.+|++-..+. |.-|-|++.+--||..=.+.+..++.
T Consensus 169 ~~yDVQliGgivLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~---------GkgVHvVTVNDYLA~RDaewmgply~fL 237 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQG--KIAEMATGEGKTLVATLPVYLNALT---------GNGVHVVTVNDYLAKRDSEWMGPLYEFH 237 (1112)
T ss_pred cccchHHhhhhhhcCC--ceeeecCCCCchhHHHHHHHHHHHc---------CCCcEEEEechhhhhccHHHHHHHHHHh
Confidence 3667776554444444 4899999999999999998766644 56688899999999855555555432
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
++.+.|..... .....+.....+||.+||...| .++|+.+. .....+.+.||||+|.++
T Consensus 238 GLsvg~i~~~~-~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 238 GLSVDCIDKHQ-PNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCceeecCCCC-CCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 56777665422 2233344556789999998766 33443321 124568899999999875
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0007 Score=73.12 Aligned_cols=127 Identities=18% Similarity=0.111 Sum_probs=78.6
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
+.|+ .+++-|.+++..++.+++ +++.|+.|+|||.+ +-.+...+. ..|.+++.++||-.-+..+.+.
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e--------~~G~~V~~~ApTGkAA~~L~e~-- 409 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE--------AAGYEVRGAALSGIAAENLEGG-- 409 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH--------HcCCeEEEecCcHHHHHHHhhc--
Confidence 3466 599999999999998664 78999999999985 334444332 2367899999998766544321
Q ss_pred HhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-
Q 016712 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273 (384)
Q Consensus 195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l- 273 (384)
. ++. -.|..++......+...+...++|||||+-.+... .+..+++..
T Consensus 410 --t-Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~ 458 (988)
T PRK13889 410 --S-GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAA 458 (988)
T ss_pred --c-Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhh
Confidence 0 111 01222221111122233566789999999965433 445566543
Q ss_pred CCCCcEEEEEcc
Q 016712 274 PQNRQSMMFSAT 285 (384)
Q Consensus 274 ~~~~q~l~~SAT 285 (384)
+..+++|++-=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 456777776544
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=66.99 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=86.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.|+..-.-.|..|+..++... =+.+.|+.|+|||+.++.+.+...... ....+++|--|+..+.+++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpvG~dIG---- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPVGEDIG---- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCcccccC----
Confidence 378767778899999988764 367789999999999999999888763 23456888888877665431
Q ss_pred HhCCCCc---eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCC----------ccEEEEeCcccccCCC
Q 016712 195 ESAPSLD---TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE----------VQFVVLDEADQMLSVG 261 (384)
Q Consensus 195 ~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~----------l~~vViDEah~~~~~~ 261 (384)
+.|+.. ..-+.+ ...+..+.+.+.. =++-+.+...+....+.+.. =.+||||||+.+
T Consensus 294 -fLPG~eEeKm~PWmq--~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---- 363 (436)
T COG1875 294 -FLPGTEEEKMGPWMQ--AIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---- 363 (436)
T ss_pred -cCCCchhhhccchHH--HHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----
Confidence 001000 000000 0000111111100 01122333333333332211 148999999987
Q ss_pred hHHHHHHHHHHCCCCCcEEEEE
Q 016712 262 FAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 262 ~~~~~~~il~~l~~~~q~l~~S 283 (384)
-..+++.|+.+..+...++++.
T Consensus 364 TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcC
Confidence 4568899999998888887753
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00032 Score=72.68 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=55.4
Q ss_pred CCCCCcHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHHHHhhhh----------c-------cC-------
Q 016712 118 GISKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNE----------K-------HG------- 169 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~----------~-------~~------- 169 (384)
+...|++.|...+..++. ..+.++.+|||+|||++-+-..+........ + .+
T Consensus 18 fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s 97 (945)
T KOG1132|consen 18 FPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKS 97 (945)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCch
Confidence 345799999988777664 4689999999999999876665554432220 0 00
Q ss_pred ---C------CCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 170 ---R------GRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 170 ---~------~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
. ...+++.|-+-|..-..|+.+++++..
T Consensus 98 ~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 98 EEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 014567777778888889998888743
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00035 Score=68.57 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=120.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccC-CCch--hHHHHHHHHHHHHhhhh-------c---------------cCCCCCCE
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRART-GTGK--TLAFGIPILDKIIKFNE-------K---------------HGRGRNPL 175 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~T-GsGK--T~~~~lp~l~~l~~~~~-------~---------------~~~~~~~~ 175 (384)
.+|+.|.+.+..+.+-+|++..-.| +.|+ +-.|++-+++++.+... + ......|+
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 5899999999999999998765433 3454 55688999998864221 1 01124789
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCCCce---E------------------------------EEECCCChH---------H
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPSLDT---I------------------------------CVYGGTPIS---------H 213 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~~~~---~------------------------------~~~g~~~~~---------~ 213 (384)
|||+||+|+-|..+.+.+..+..+..- . ++.|.+... .
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 999999999999999988876322110 0 011111100 0
Q ss_pred HHHHH--hcCCCEEEECchhHHHHHHcc------CCCCCCccEEEEeCcccccCCChHHHHHHHHHHC---CCC------
Q 016712 214 QMRAL--DYGVDAVVGTPGRVIDLIKRN------ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQN------ 276 (384)
Q Consensus 214 ~~~~~--~~~~~IlV~Tp~~l~~~l~~~------~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l---~~~------ 276 (384)
..... ....||+||+|--|..++... .-.++.+.++|||.+|.|+..+ ...+..|+..| |..
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCCh
Confidence 01111 125899999999987777532 2246788999999999888764 34555665554 221
Q ss_pred ---------------CcEEEEEccCChhHHHHHHHhcCCC
Q 016712 277 ---------------RQSMMFSATMPPWIRSLTNKYLKNP 301 (384)
Q Consensus 277 ---------------~q~l~~SAT~~~~~~~~~~~~l~~~ 301 (384)
+|+++||+--.+....+...++.++
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~ 494 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNM 494 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 4899999998888888888887765
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=54.36 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=39.9
Q ss_pred HHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 129 VLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 129 ~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
++...+.+.+ +++.||+|+|||...+-.+...+... ... +.+++|++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3442333444 55699999999976544444333110 112 678999999999999998888
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00077 Score=71.45 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=78.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 107 SQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
++..+...-..++ .+++-|.+|+..+..+ +-+++.|+.|+|||... -.+...+. ..+..+++++||---
T Consensus 339 ~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~--------~~g~~V~~~ApTg~A 408 (744)
T TIGR02768 339 SPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWE--------AAGYRVIGAALSGKA 408 (744)
T ss_pred CHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHH--------hCCCeEEEEeCcHHH
Confidence 3433333333444 5899999999998874 56799999999999753 33333332 236789999999877
Q ss_pred HHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHH
Q 016712 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~ 265 (384)
+..+.+. . ++.. .|-.++...+..+...+...++|||||+-.+... .
T Consensus 409 a~~L~~~----~-g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~ 455 (744)
T TIGR02768 409 AEGLQAE----S-GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----Q 455 (744)
T ss_pred HHHHHhc----c-CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----H
Confidence 6654321 1 1111 1111121111222233567889999999965433 3
Q ss_pred HHHHHHHC-CCCCcEEEEE
Q 016712 266 VEVILERL-PQNRQSMMFS 283 (384)
Q Consensus 266 ~~~il~~l-~~~~q~l~~S 283 (384)
+..+++.. ....++|++-
T Consensus 456 ~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 456 MARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 34455532 3466666664
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=66.42 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=69.8
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCC-ChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGT-PISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~-~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
...|.+|||+..-.-|-++.+.++.+- .+..+.-+++.. ...++...+.. .++|.||||+|+..++..+.+.++++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 457899999999999999999999874 345555556554 55666666764 589999999999999999999999999
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||||--|
T Consensus 204 ~ivlD~s~ 211 (252)
T PF14617_consen 204 RIVLDWSY 211 (252)
T ss_pred EEEEcCCc
Confidence 99999755
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=73.12 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=79.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH-------H-HHhCCCCceEEEECCC
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE-------F-HESAPSLDTICVYGGT 209 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~-------~-~~~~~~~~~~~~~g~~ 209 (384)
++=|.+.||+|||.+|+..++..=.. -.-.+-+|+|||.+.-.-+... | +..+.+.+.-.+.-..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~-------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK-------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH-------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 68889999999999998887654322 1234689999998876543322 2 3333333333332221
Q ss_pred ChHHHHHHHhcCCCEEEECchhHHHH------HHccCCCCCC--------------c-cEEEEeCcccccCC-ChHHHHH
Q 016712 210 PISHQMRALDYGVDAVVGTPGRVIDL------IKRNALNLSE--------------V-QFVVLDEADQMLSV-GFAEDVE 267 (384)
Q Consensus 210 ~~~~~~~~~~~~~~IlV~Tp~~l~~~------l~~~~~~~~~--------------l-~~vViDEah~~~~~-~~~~~~~ 267 (384)
......-....++.|++.|-..+..- +.+......+ + -.|||||=|+|... -+...
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~-- 226 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGA-- 226 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHH--
Confidence 11222222233577888776554322 1111111111 1 26999999998763 12222
Q ss_pred HHHHHCCCCCcEEEEEccCChhHH
Q 016712 268 VILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
+..+. ..-++=++||+++...
T Consensus 227 --i~~l~-pl~ilRfgATfkd~y~ 247 (985)
T COG3587 227 --IKQLN-PLLILRFGATFKDEYN 247 (985)
T ss_pred --HHhhC-ceEEEEecccchhhhc
Confidence 22332 2337778999988755
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0006 Score=62.77 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=66.6
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
..+.++++.||+|+|||..+.--..... . .|..++++. ..+|+.++..... .
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~-~--------~g~~v~f~t-~~~l~~~l~~~~~------------~------ 147 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC-Q--------AGHRVLFAT-AAQWVARLAAAHH------------A------ 147 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH-H--------CCCchhhhh-HHHHHHHHHHHHh------------c------
Confidence 3568999999999999986543333222 2 244555543 3344444321100 0
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHHCCCCCcEEEEEccCChhHHH
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l~~~~q~l~~SAT~~~~~~~ 292 (384)
++.. ..+. .+.+.++|||||+|....... ...+..++.....+..+|+.|...+....+
T Consensus 148 -------------~~~~---~~l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 148 -------------GRLQ---AELV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGE 207 (254)
T ss_pred -------------CcHH---HHHH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHH
Confidence 1111 1111 134578999999997643322 223445554332334577777776554222
Q ss_pred ----------HHHHhcCCCeEEEecCC
Q 016712 293 ----------LTNKYLKNPLTVDLVGD 309 (384)
Q Consensus 293 ----------~~~~~l~~~~~i~~~~~ 309 (384)
++.+.+.....|.+.++
T Consensus 208 ~~~d~~~a~ai~dRl~~~~~~i~~~g~ 234 (254)
T PRK06526 208 VFGDDVVAAAMIDRLVHHAEVISLKGD 234 (254)
T ss_pred HcCChHHHHHHHHHHhcCceEEeecCC
Confidence 23444455556665543
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0023 Score=59.30 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=59.9
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
+..+.++++.||+|+|||..+. .+...+.. .|..++|+. ..+|+.++......
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--------~g~~v~f~~-~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA-AIGLALIE--------NGWRVLFTR-TTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH-HHHHHHHH--------cCCceeeee-HHHHHHHHHHHHhC-----------------
Confidence 3467899999999999998543 33333322 244565554 45666654322110
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.+.+.+... +.+.++|||||.+....... ...+..++...-.+..+|+.|-..+..
T Consensus 156 --------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 156 --------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred --------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 011111121 34678999999997654332 234555555433345566655554443
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00016 Score=75.58 Aligned_cols=152 Identities=18% Similarity=0.294 Sum_probs=99.3
Q ss_pred CCcHHHHHHHHHHh---CC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM---QG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~---~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++.+||...+..+. ++ -|-|+.-.+|-|||.. .+..+..+.+.... .|| -|||||+-.|.+ |..+|..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~----~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM----QGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHccc----CCC-eEEeccccccCC-chhhcccc
Confidence 78999999887654 33 3678899999999985 46666666654322 244 689999999887 78889999
Q ss_pred CCCCceEEEECCCChHHHH--HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 197 APSLDTICVYGGTPISHQM--RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
.|.+..+.+.|........ .......+|+++|.+.+.. ....+.--++.++||||-|+|-.. ..++-..+.
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa-----~~KLt~~L~ 539 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA-----ICKLTDTLN 539 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch-----hhHHHHHhh
Confidence 9888776666653322211 1122348999999876643 111222235779999999997653 222322222
Q ss_pred ---CCCcEEEEEccC
Q 016712 275 ---QNRQSMMFSATM 286 (384)
Q Consensus 275 ---~~~q~l~~SAT~ 286 (384)
.....+++|.|+
T Consensus 540 t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTP 554 (1157)
T ss_pred ccccchhhhhhcCCh
Confidence 234466777886
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00059 Score=73.85 Aligned_cols=158 Identities=21% Similarity=0.192 Sum_probs=101.5
Q ss_pred CCCcHHHHHHHHHHh-----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
..+.++|.+.++.+. .+.+.++..+.|.|||+-.+.-+.. +.... ....+.+++++|+ +++.+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~----~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESI----KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcc----cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 467889999887654 2568889999999999865444333 21110 1113568999998 46677899999
Q ss_pred HhCCCCc-eEEEECCCCh----HHHHHHHhc-C----CCEEEECchhHHHHH-HccCCCCCCccEEEEeCcccccCCChH
Q 016712 195 ESAPSLD-TICVYGGTPI----SHQMRALDY-G----VDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 195 ~~~~~~~-~~~~~g~~~~----~~~~~~~~~-~----~~IlV~Tp~~l~~~l-~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
++.+.+. +...+|.... .+....+.. . .+++++|.+.+.... ....+.-..++.+|+||+|.+-+.. .
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8888888 7777877652 333333332 2 699999998886632 1123334568899999999965542 2
Q ss_pred HHHHHHHHHCCCCCcEEEEEccC
Q 016712 264 EDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
.....+. .+.... .+.+|.||
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTP 510 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTP 510 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCCh
Confidence 2222222 333333 37788887
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0026 Score=69.30 Aligned_cols=138 Identities=20% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 105 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
++++..+......++ .+++-|.+++..+.. ++-.++.|+.|+|||.+ +-++...+. ..|.+++.++||-
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e--------~~G~~V~g~ApTg 435 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWE--------AAGYRVVGGALAG 435 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHH--------HcCCeEEEEcCcH
Confidence 345555655555555 599999999998864 45689999999999984 344444432 2477899999998
Q ss_pred HHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
.-+..+.+. . ++.. .|-.+++.....+...+..-++|||||+-.+..
T Consensus 436 kAA~~L~e~----~-Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~---- 482 (1102)
T PRK13826 436 KAAEGLEKE----A-GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS---- 482 (1102)
T ss_pred HHHHHHHHh----h-CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH----
Confidence 776554321 1 1221 121111111111223455677999999996533
Q ss_pred HHHHHHHHHCC-CCCcEEEEEcc
Q 016712 264 EDVEVILERLP-QNRQSMMFSAT 285 (384)
Q Consensus 264 ~~~~~il~~l~-~~~q~l~~SAT 285 (384)
..+..+++..+ ..+++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 34555666654 46777777544
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0021 Score=52.75 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999743
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00041 Score=61.03 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=24.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
.=.++.||+|+|||...+--+ .+.. ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~-~~~~--------~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRA-YNYE--------ERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHH-HHHH--------HcCCeEEEEec
Confidence 346889999999998654333 3332 23667888866
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00063 Score=66.16 Aligned_cols=121 Identities=19% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHH------hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH--HHH
Q 016712 121 KLFPIQKAVLEPA------MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV--EKE 192 (384)
Q Consensus 121 ~~~~~Q~~~i~~i------~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~--~~~ 192 (384)
++++-|+.++..+ ..+.++.+.|+-|+|||.. +-.+..... ..+..+++++||-.-|.-+ -.+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~-------~~~~~~~~~a~tg~AA~~i~~G~T 71 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR-------SRGKKVLVTAPTGIAAFNIPGGRT 71 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc-------cccceEEEecchHHHHHhccCCcc
Confidence 3678899998888 6788999999999999984 333332222 2456788999987766655 344
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
+..++ ++++... . .... .+.+. ......+.++++|||||+-.+... ....+...++.
T Consensus 72 ~hs~f-~i~~~~~--~-------------~~~~--~~~~~----~~~~~~l~~~~~lIiDEism~~~~-~l~~i~~~lr~ 128 (364)
T PF05970_consen 72 IHSFF-GIPINNN--E-------------KSQC--KISKN----SRLRERLRKADVLIIDEISMVSAD-MLDAIDRRLRD 128 (364)
T ss_pred hHHhc-Ccccccc--c-------------cccc--ccccc----chhhhhhhhheeeecccccchhHH-HHHHHHHhhhh
Confidence 44444 1221100 0 0000 11110 111224678899999999866554 34444444554
Q ss_pred C
Q 016712 273 L 273 (384)
Q Consensus 273 l 273 (384)
+
T Consensus 129 i 129 (364)
T PF05970_consen 129 I 129 (364)
T ss_pred h
Confidence 3
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0006 Score=64.34 Aligned_cols=123 Identities=18% Similarity=0.100 Sum_probs=74.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~ 201 (384)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... ....++|++++|+..+.++..++........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999987 6689999999999999987655555553321 2345699999999999999999888542110
Q ss_pred eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCC--CCccEEEEeCcc
Q 016712 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL--SEVQFVVLDEAD 255 (384)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~--~~l~~vViDEah 255 (384)
. . ................+.|+|-..+...+....... -.-.+-++|+..
T Consensus 74 ~---~-~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 Q---E-SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp H---C-CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c---c-ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 0 000001112222345789999887766553321111 122456677666
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0036 Score=59.92 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=75.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC---HHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT---RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt---~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
.-++++|++|+|||....--+ ..+.. .+.+++++... ..-..|+......++ +++.....+.....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~lg--v~v~~~~~g~dp~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--------NGFSVVIAAGDTFRAGAIEQLEEHAERLG--VKVIKHKYGADPAA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--------cCCeEEEecCCcCcHHHHHHHHHHHHHcC--CceecccCCCCHHH
Confidence 357889999999998543222 22322 34567666543 233345444444433 33222111111111
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHH
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~ 292 (384)
. +.+.+... ...+.++|+||.+.++.. ..+..++..+.+.+.++.-+++++||......+
T Consensus 210 v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 210 V-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred H-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 0 11111111 123567999999998763 346677788877777788899999998777666
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
.+..|.
T Consensus 271 ~a~~f~ 276 (336)
T PRK14974 271 QAREFN 276 (336)
T ss_pred HHHHHH
Confidence 666664
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=66.89 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 104 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
..+.|.+... -+..++..|++|+-.++..+| .+|.|=+|+|||..... +++.+. ..|+++|..+-|
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~--------~~gkkVLLtsyT 722 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILV--------ALGKKVLLTSYT 722 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHH--------HcCCeEEEEehh
Confidence 3455555553 223689999999999887765 78889999999985432 223332 247889999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------------ceEEEECCCC--hHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 183 RELAKQVEKEFHESAPSL-------------DTICVYGGTP--ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 183 ~~La~q~~~~~~~~~~~~-------------~~~~~~g~~~--~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
..-+.-+.-.++...-.+ +-.+...+.+ .-...+...+.+.||.+|--.+.+.+.. .+.++
T Consensus 723 hsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~----~R~FD 798 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV----NRQFD 798 (1100)
T ss_pred hHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh----ccccC
Confidence 888777777766543110 0001111111 1122233344588999996555554432 34689
Q ss_pred EEEEeCcccccC
Q 016712 248 FVVLDEADQMLS 259 (384)
Q Consensus 248 ~vViDEah~~~~ 259 (384)
+.|||||-.+..
T Consensus 799 ~cIiDEASQI~l 810 (1100)
T KOG1805|consen 799 YCIIDEASQILL 810 (1100)
T ss_pred EEEEcccccccc
Confidence 999999998754
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0063 Score=56.54 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=58.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
.+++.|++|+|||..+ .++.+.+.. .+..++++ +..++..++...+.... ..
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~--------~~~~v~~~-~~~~ll~~i~~~~~~~~----------~~-------- 167 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIE--------KGVPVIFV-NFPQLLNRIKSTYKSSG----------KE-------- 167 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHH--------cCCeEEEE-EHHHHHHHHHHHHhccc----------cc--------
Confidence 4999999999999865 455555543 13445544 45556555444332110 00
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc--ccCCChHHHHHHHHHHC-CCCCcEEEEEccCChhH
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ--MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~--~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~ 290 (384)
+...+... +.+.++|||||++. ..++ ....+..++... ....++|+.|-..|..+
T Consensus 168 ----------~~~~~~~~-------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 168 ----------DENEIIRS-------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred ----------cHHHHHHH-------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 00111111 34678999999964 3333 334455555543 34566777666555443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00081 Score=54.87 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=12.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
+++.+++.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3467899999999999864
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.015 Score=55.65 Aligned_cols=128 Identities=14% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.+.++++.|+||+|||... .++...+.. .+..|+++. ..+|..++.... +. .... ...
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~--------~g~~V~y~t-~~~l~~~l~~~~---~~--------~~~~-~~~ 239 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD--------RGKSVIYRT-ADELIEILREIR---FN--------NDKE-LEE 239 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH--------CCCeEEEEE-HHHHHHHHHHHH---hc--------cchh-HHH
Confidence 3578999999999999854 344444433 255566654 455555443210 00 0000 000
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHHC-CCCCcEEEEEccCChhHHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERL-PQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~ 292 (384)
... .+.++++||||+.+......| ...+..++... ....++|+.|--.|.....
T Consensus 240 -----------------~~~-------~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 240 -----------------VYD-------LLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLK 295 (329)
T ss_pred -----------------HHH-------HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 001 134678999999987654333 33455555543 3345566655544444322
Q ss_pred -----HHHHhcCCCeEEEecC
Q 016712 293 -----LTNKYLKNPLTVDLVG 308 (384)
Q Consensus 293 -----~~~~~l~~~~~i~~~~ 308 (384)
+..+.......|.+.+
T Consensus 296 ~~~eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 296 TYSERISSRLLGNFTLLKFYG 316 (329)
T ss_pred HHhHHHHHHHHcCCEEEEecC
Confidence 3334444445555543
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0042 Score=63.21 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.+.|+|...+..+..++-.++..+=..|||.+....++..... ..+.++++++|+..-|..+++.++......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5899999999887666667888888999999876444433332 235689999999999999998887654322
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC--CCc
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQ 278 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~--~~q 278 (384)
+...-.+-.......-.+.+|..|.+.|-+. +...=.+..++|+||+|.+.+ +...+..+...+.. ..+
T Consensus 132 P~l~~~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r 202 (534)
T PHA02533 132 PDFLQPGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSK 202 (534)
T ss_pred HHHhhcceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCce
Confidence 2100000000001111123455665544221 111223567899999997654 33333334333332 234
Q ss_pred EEEEEccCC
Q 016712 279 SMMFSATMP 287 (384)
Q Consensus 279 ~l~~SAT~~ 287 (384)
++.+| |++
T Consensus 203 ~iiiS-Tp~ 210 (534)
T PHA02533 203 IIITS-TPN 210 (534)
T ss_pred EEEEE-CCC
Confidence 44444 444
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.017 Score=56.37 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=70.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+.++++||||+|||.+..--+....... ...+..+.++.- .+.-+.++.+.+.+.. ++++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv~~~--------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVKAI--------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHHHHHHhhcC-CcceEee---------
Confidence 4689999999999987533222211110 012344555443 3344444444444432 2332211
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCC-CcEEEEEccCChh-HH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQN-RQSMMFSATMPPW-IR 291 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~-~q~l~~SAT~~~~-~~ 291 (384)
-++..+...+.. +.+.++|+||++.+..... ....+..++...... --++++|||.... +.
T Consensus 240 ------------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 240 ------------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ------------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 123333333322 3578999999999876331 234555666655433 4578899998644 45
Q ss_pred HHHHHh
Q 016712 292 SLTNKY 297 (384)
Q Consensus 292 ~~~~~~ 297 (384)
+....|
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 566666
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.01 Score=57.46 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC--HHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT--RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt--~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
|..++++||||+|||....--+...+.. ....++.+++-. +.-+.++.+.+.+.. ++++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-------~G~~~V~lit~D~~R~ga~EqL~~~a~~~-gv~~~~--------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-------FGASKVALLTTDSYRIGGHEQLRIFGKIL-GVPVHA--------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEecccccccHHHHHHHHHHHc-CCceEe---------
Confidence 4679999999999999754333322211 111344444422 222344444444443 233322
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCChhH-H
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWI-R 291 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~~~-~ 291 (384)
+-+++.+...+. .+.+.++|+||++-+..... ....+..+.....+...++++|||..... .
T Consensus 200 ------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 200 ------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 223333333332 23456889999987543221 22223222222222344888899986554 4
Q ss_pred HHHHHhc
Q 016712 292 SLTNKYL 298 (384)
Q Consensus 292 ~~~~~~l 298 (384)
+.+..|.
T Consensus 264 evi~~f~ 270 (374)
T PRK14722 264 EVVQAYR 270 (374)
T ss_pred HHHHHHH
Confidence 4555553
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=52.81 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999854
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0029 Score=57.61 Aligned_cols=45 Identities=20% Similarity=0.438 Sum_probs=28.6
Q ss_pred CCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.+.+++|||++|.+... .+...+..++..+..+...++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35678999999977543 3455667777665543344566666544
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0025 Score=57.81 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCccEEEEeCcccccCC-ChHHHHHHHHHHCCC-CCcEEEEEccCChh
Q 016712 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPPW 289 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~-~~q~l~~SAT~~~~ 289 (384)
.+.+++||||+|.+... .+...+..++..+.. +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 46789999999987633 234455555555433 45677888876554
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.013 Score=53.54 Aligned_cols=107 Identities=18% Similarity=0.312 Sum_probs=59.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.|++|+|||..+ ..+...+.. .+..++++ +..+|...+...+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~--------~g~~v~~i-t~~~l~~~l~~~~~~-----------~~-------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLL--------RGKSVLII-TVADIMSAMKDTFSN-----------SE-------- 150 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEE-EHHHHHHHHHHHHhh-----------cc--------
Confidence 47899999999999854 344444432 24556665 444444433332210 00
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH-HHHHHHHH-CCCCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE-DVEVILER-LPQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~-~~~~il~~-l~~~~q~l~~SAT~~~~ 289 (384)
.+.+.+.+. +.++++|||||++......+.. .+..|+.. ......+++.|---+..
T Consensus 151 ----------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 151 ----------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred ----------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 011122221 4578899999999876544443 34445553 33456677766554443
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0063 Score=60.04 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+-......+..+..++++++.||+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 45556667777888999999999999999865
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0059 Score=55.54 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=26.2
Q ss_pred CCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChhH
Q 016712 244 SEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~~ 290 (384)
.+.++|||||+|.+.... ....+-.++.... ...++|+.|-..|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456789999999876543 2233334444432 2345555555444443
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=53.44 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
.+.++++.|++|+|||... .++...+.. ..+..++|+. ..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~-------~~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMR-------KKGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhh-------hcCceEEEEE-HHHHHHHH
Confidence 3578999999999999854 444454432 1145566665 34454443
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.021 Score=55.41 Aligned_cols=129 Identities=12% Similarity=0.224 Sum_probs=69.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHH-HHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRE-LAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~-La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
+.++++||||+|||.....-+.. +. ..+.++.++.- .+. -+.|+. .+.+.. +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~--------~~GkkVglI~aDt~RiaAvEQLk-~yae~l-g-------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FH--------GKKKTVGFITTDHSRIGTVQQLQ-DYVKTI-G-------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HH--------HcCCcEEEEecCCcchHHHHHHH-HHhhhc-C--------------
Confidence 46789999999999865433332 21 12445555554 222 233332 222211 1
Q ss_pred HHHHHhcCCCEE-EECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCCh-hH
Q 016712 214 QMRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP-WI 290 (384)
Q Consensus 214 ~~~~~~~~~~Il-V~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~-~~ 290 (384)
+.++ +.+|..+.+.+..-. .-.+.++|+||-+=+.... ..-.++..+++...++.-++.+|||... ..
T Consensus 297 --------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 297 --------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred --------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2222 335555555443211 0125789999988765433 1344455555555555557779998654 45
Q ss_pred HHHHHHhcC
Q 016712 291 RSLTNKYLK 299 (384)
Q Consensus 291 ~~~~~~~l~ 299 (384)
.+.+..|-.
T Consensus 368 ~~i~~~F~~ 376 (436)
T PRK11889 368 IEIITNFKD 376 (436)
T ss_pred HHHHHHhcC
Confidence 677776643
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0055 Score=54.14 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=69.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
++++||||+|||....=-+. ++.. . +.++.+++- .|.=+.++.+.+.+.. ++++.......+..+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa-~~~~-------~-~~~v~lis~D~~R~ga~eQL~~~a~~l-~vp~~~~~~~~~~~~~-- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA-RLKL-------K-GKKVALISADTYRIGAVEQLKTYAEIL-GVPFYVARTESDPAEI-- 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHHH-------T-T--EEEEEESTSSTHHHHHHHHHHHHH-TEEEEESSTTSCHHHH--
T ss_pred EEEECCCCCchHhHHHHHHH-HHhh-------c-cccceeecCCCCCccHHHHHHHHHHHh-ccccchhhcchhhHHH--
Confidence 68899999999986432222 2221 1 444555553 4555555555555544 2332221111111111
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+...+.. ...++.++|+||-+-+.... ....++..+++.+.+..-.+++|||...+....+.
T Consensus 72 ---------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 ---------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ---------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ---------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1111111 11235778899987654322 24567777777776667788999999877655555
Q ss_pred Hhc
Q 016712 296 KYL 298 (384)
Q Consensus 296 ~~l 298 (384)
.+.
T Consensus 135 ~~~ 137 (196)
T PF00448_consen 135 AFY 137 (196)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.02 Score=52.53 Aligned_cols=102 Identities=16% Similarity=0.308 Sum_probs=56.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
.++++.|++|+|||..+ .++...+.. .+..+ +.++..+|..++...+.. +.
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~~~~------------~~------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSV-IVVTVPDVMSRLHESYDN------------GQ------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCe-EEEEHHHHHHHHHHHHhc------------cc-------
Confidence 57999999999999854 444444432 24444 444556776665544321 00
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHH-CCCCCcEEEEEcc
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILER-LPQNRQSMMFSAT 285 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~-l~~~~q~l~~SAT 285 (384)
+...++. .+.++++|||||++......+ ...+..++.. .....++++.|-=
T Consensus 153 -----------~~~~~l~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 153 -----------SGEKFLQ-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred -----------hHHHHHH-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0001111 145789999999965433222 3334444443 3345667776543
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0077 Score=54.17 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=25.6
Q ss_pred CccEEEEeCcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
..++|||||+|.+.... ....+..++..+......+++|++.++
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 34689999999876542 345555565554322224555666443
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0052 Score=55.96 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=25.2
Q ss_pred ccEEEEeCcccccCC-ChHHHHHHHHHHCC-C-CCcEEEEEccCChh
Q 016712 246 VQFVVLDEADQMLSV-GFAEDVEVILERLP-Q-NRQSMMFSATMPPW 289 (384)
Q Consensus 246 l~~vViDEah~~~~~-~~~~~~~~il~~l~-~-~~q~l~~SAT~~~~ 289 (384)
.++|+|||+|.+... .+...+..++..+. . +.++++ |++.|+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~p~ 143 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRPPR 143 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCChH
Confidence 478999999987643 24445555555542 2 235555 5554443
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0035 Score=65.61 Aligned_cols=127 Identities=22% Similarity=0.284 Sum_probs=86.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .++..|.-.- +.-...-+..+.||-|||+++.+|+.-..+ .|..+.+++-.--||.--.+.+..++
T Consensus 78 g~-~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 78 GM-RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred CC-ChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 55 3556665543 333345688999999999999999865543 36679999999999987777777765
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~ 258 (384)
. ++.+.+...+....+.. -...+||..+|-..| .+.+..+ ......+.+.|+||+|-++
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~--~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKR--AAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHcCCceeeccCCCChHHHH--HHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 4 45666666666444433 344589999998766 2333222 1234468899999999775
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0037 Score=62.65 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=56.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.||+|+|||... -.+...+... ..+..++++. ..++..+....+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~------~~~~~v~yi~-~~~~~~~~~~~~~~~-------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK------NPNAKVVYVT-SEKFTNDFVNALRNN-------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEEE-HHHHHHHHHHHHHcC--------------------
Confidence 45899999999999854 3344444321 2245566664 345554443333210
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHC-CCCCcEEEEEccCChhH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l-~~~~q~l~~SAT~~~~~ 290 (384)
+.+.+... +.++++|||||+|.+.... ....+..++..+ ....++++.|...|..+
T Consensus 201 -----------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 201 -----------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred -----------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 00111121 2357799999999875532 223344444443 23455555444444443
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.077 Score=52.63 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC--HHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT--RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt--~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
++.++++||||+|||....--+...... ..+.++.++.-. +.-+.++...+.+.. ++++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-------~~g~~V~li~~D~~r~~a~eqL~~~a~~~-~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-------YGKKKVALITLDTYRIGAVEQLKTYAKIM-GIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEECCccHHHHHHHHHHHHHHh-CCceE----------
Confidence 4578999999999998654322222101 124456655532 222222233333222 12221
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHC-CCCCcEEEEEccCChh-H
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMPPW-I 290 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l-~~~~q~l~~SAT~~~~-~ 290 (384)
.+.++..+...+.. +.+.++|+||.+-+.... .....+..++... .+..-++++|||.... +
T Consensus 283 -----------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 283 -----------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL 347 (424)
T ss_pred -----------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH
Confidence 12334444444432 346789999988654322 1334555666522 2334488899998754 4
Q ss_pred HHHHHHhc
Q 016712 291 RSLTNKYL 298 (384)
Q Consensus 291 ~~~~~~~l 298 (384)
.+....|-
T Consensus 348 ~~~~~~f~ 355 (424)
T PRK05703 348 KDIYKHFS 355 (424)
T ss_pred HHHHHHhC
Confidence 45555553
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.014 Score=52.75 Aligned_cols=43 Identities=12% Similarity=0.303 Sum_probs=26.6
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCc-EEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-SMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q-~l~~SAT~~~ 288 (384)
+.++|||||+|.+... -...+..++.....+.. +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4668999999987543 33445555554433333 5777777654
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=57.97 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=56.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.|++|+|||... ..+.+.+... ..+..++++.. ..+..+....+.. +
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~~-~~~~~~~~~~~~~---~----------------- 188 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVSS-EKFTNDFVNALRN---N----------------- 188 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEEH-HHHHHHHHHHHHc---C-----------------
Confidence 35789999999999854 4444444331 22456777753 3444433322221 0
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHC-CCCCcEEEEEccCChhHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL-PQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~ 291 (384)
+.+.+...+ .+.++|||||+|.+.... ....+..++..+ ..+.++++.|...|....
T Consensus 189 -----------~~~~~~~~~-------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 189 -----------KMEEFKEKY-------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred -----------CHHHHHHHH-------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 111122222 246789999999876542 223344444443 335666554443444433
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.006 Score=54.92 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=60.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
-+++.|++|+|||-. +-++...+... .++.+++|+... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~~-~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSAE-EFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEHH-HHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecHH-HHHHHHHHHHHc----------------------
Confidence 489999999999983 33444444321 235567776543 344333333332
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChhH
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~~ 290 (384)
.....+.+. +...++++||++|.+.+.. ....+-.++..+. .+.++|+.|...|...
T Consensus 86 ---------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ---------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ---------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ---------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011111121 3468899999999876542 3445555555543 4567877777777654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.007 Score=60.35 Aligned_cols=114 Identities=11% Similarity=0.208 Sum_probs=59.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.||+|+|||... -++.+.+... ..+.+++|+.. ..+..+....+..-
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~------~~~~~v~yi~~-~~f~~~~~~~~~~~-------------------- 182 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN------EPDLRVMYITS-EKFLNDLVDSMKEG-------------------- 182 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHhcc--------------------
Confidence 35899999999999854 3344444321 23456777764 33444333332210
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWIRSLT 294 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~ 294 (384)
+.+.+...+. .+.++++|||+|.+.+.. ....+..++..+. ...++|+.|-..|..+..+.
T Consensus 183 -----------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 183 -----------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred -----------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 0011111111 246789999999876542 2334444444432 34555555545555544443
Q ss_pred H
Q 016712 295 N 295 (384)
Q Consensus 295 ~ 295 (384)
.
T Consensus 246 ~ 246 (440)
T PRK14088 246 D 246 (440)
T ss_pred H
Confidence 3
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.034 Score=51.39 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=29.2
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
+..|.++++.||+|+|||..+..-..... ..|..++++. ..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~---------~~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV---------RAGIKVRFTT-AADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH---------HcCCeEEEEe-HHHHHHHH
Confidence 44678999999999999986543332222 1255566654 34554443
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=55.74 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....++|||||+|.+... ....+..+++..+..+.+|+.+.
T Consensus 123 ~~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 123 SADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 345679999999987543 34455666666666666665443
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.022 Score=47.81 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=24.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+++.|++|+|||.....-+.... ..+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~---------~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA---------TKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH---------hcCCEEEEEECCcchH
Confidence 68899999999995433332221 1356677777655443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0038 Score=54.34 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=33.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+++.|++|+|||...+--+...+. .|..++|++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999965444444431 3566887764 466777777777664
|
A related protein is found in archaea. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=54.87 Aligned_cols=117 Identities=14% Similarity=0.261 Sum_probs=61.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccC---CCCCCEEEEEecCHHHHHHHHHHHHHh-CCCCceEEEECCCChH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG---RGRNPLCLVLAPTRELAKQVEKEFHES-APSLDTICVYGGTPIS 212 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~---~~~~~~~lvl~Pt~~La~q~~~~~~~~-~~~~~~~~~~g~~~~~ 212 (384)
.+++++|+||-|||.+. +++........ ...-|.+++-+|...-....|..+-.. +..++. .....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-----~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-----RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-----CCCHH
Confidence 38999999999999843 44433221111 112245666677766666666664443 211110 11111
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH--HHHHHHHHHCCC--CCcEEEE
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA--EDVEVILERLPQ--NRQSMMF 282 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~--~~~~~il~~l~~--~~q~l~~ 282 (384)
.. .. ...+++. --+++++||||+|.++..... ..+...++.+.+ ...+|++
T Consensus 132 ~~-~~-------------~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 132 KL-EQ-------------QVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HH-HH-------------HHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 10 00 0112332 236789999999998865432 334444555544 3445554
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0082 Score=55.31 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=35.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
+++++++.||+|+|||..+ .++...+.. .+.-++.+++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~---------~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK---------AGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH---------cCCeEEEEEHHHHHHHHHHHHhc
Confidence 6789999999999999965 344444433 23355667788888877666554
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0068 Score=64.36 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+++-|.+++.. .+..++|.|..|||||.+..--+...+... .-...++|+|+-|+..|.++.+++.++.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999865 346899999999999997544444333211 11345699999999999999999988763
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.025 Score=59.44 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..+++-|++++-. ...+++|.|..|||||.+..--+...+... ...+.++|+++.|+..|..+.+++....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4699999999853 345789999999999997644443333221 1234579999999999999999988765
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.03 Score=47.60 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=75.2
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH-HHHHHHHHHhCCCCceEEEECC-----CChH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA-KQVEKEFHESAPSLDTICVYGG-----TPIS 212 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La-~q~~~~~~~~~~~~~~~~~~g~-----~~~~ 212 (384)
+.+-.++|.|||.+++--++..+ +.|.+++++-=.+.-. .--...++++ +++....+..+ ....
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~---------~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~ 74 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL---------GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDE 74 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChH
Confidence 45567779999999877777766 3477788843222110 0011234443 33332221111 0111
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
+...... ..+... ...+...+.++||+||+-..+..++ ..++..+++..+.+.-+|+.+-.+|+++
T Consensus 75 ~~~~~a~-----------~~~~~a-~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 75 EDIAAAA-----------EGWAFA-KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred HHHHHHH-----------HHHHHH-HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 1111100 111111 1122345789999999998877664 4567778888788888888888888877
Q ss_pred HHHHH
Q 016712 291 RSLTN 295 (384)
Q Consensus 291 ~~~~~ 295 (384)
.+++.
T Consensus 143 ~e~AD 147 (159)
T cd00561 143 IEAAD 147 (159)
T ss_pred HHhCc
Confidence 76654
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.032 Score=45.48 Aligned_cols=38 Identities=8% Similarity=0.327 Sum_probs=27.2
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
.-.+|+|||+|.+.+ +...++.+.+.- ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999998864 677777777754 46677765444
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0067 Score=59.72 Aligned_cols=143 Identities=13% Similarity=0.230 Sum_probs=80.1
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH-HHHHHHHHHHHhCCCCceEE-EECCCChHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTIC-VYGGTPISHQMR 216 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~-La~q~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 216 (384)
.++.|..|||||.+..+-++..+... ..+.+++++-++.. |-.-++..+......++... +....... ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-~i- 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-EI- 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc-EE-
Confidence 57899999999999888777776552 14677999999887 55556666665433222111 11000000 00
Q ss_pred HHhc-CCCEEEECc-hhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHH
Q 016712 217 ALDY-GVDAVVGTP-GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRS 292 (384)
Q Consensus 217 ~~~~-~~~IlV~Tp-~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~ 292 (384)
.+.. |..|++..- +.... +. ....++++.+||+..+... .+..++.+++. ....+.+|.||+....-
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 0111 345555543 22211 11 1234689999999987433 44555555542 22357889998765444
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
+...|+
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 444554
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0093 Score=63.71 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.+.+++||||+|+|... -...+.++++..+.++.+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 56789999999998765 3345566666666677777655
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.16 Score=51.36 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=29.8
Q ss_pred CCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCCh-hHHHHHHHhc
Q 016712 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYL 298 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~-~~~~~~~~~l 298 (384)
+.+.++||||.+-...... ...++..+.. ......+++++++... .....++.|-
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHHHHHH
Confidence 3467899999987543221 1222333322 2234567888888753 3444555543
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0078 Score=63.96 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++-|.+++.. ....++|.|..|||||.+..--+...+... .-...++|+|+-|+..|.++.+++.++.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE-----NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 589999999864 346899999999999997544444333211 1124569999999999999999998875
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.034 Score=59.27 Aligned_cols=84 Identities=6% Similarity=-0.047 Sum_probs=67.8
Q ss_pred CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh------hHHHHHH
Q 016712 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP------WIRSLTN 295 (384)
Q Consensus 222 ~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~------~~~~~~~ 295 (384)
..|+++||..|..-+..+.+.+.++..|||||||++.+..-...+..+.+.-++..-+.+|||.|.. .+...++
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 5899999999998888999999999999999999998877677777788777777889999999874 3555555
Q ss_pred HhcCCCeEEE
Q 016712 296 KYLKNPLTVD 305 (384)
Q Consensus 296 ~~l~~~~~i~ 305 (384)
...-..+.+.
T Consensus 88 ~L~i~~v~l~ 97 (814)
T TIGR00596 88 NLFLRHVYLW 97 (814)
T ss_pred HhCcCeEEEe
Confidence 5444444443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.045 Score=61.95 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
.+++-|.+|+..++.. +-++|.|..|+|||.+. -.++..+... ....+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l----~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML----PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH----hhccCceEEEEechHHHHHHHH
Confidence 6899999999999854 67899999999999863 2222222110 0123567889999988776653
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.025 Score=56.12 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=33.9
Q ss_pred ccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 246 VQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 246 l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
.++||||.+-+.. +...-.++..+.....++.-++.++||......+.+..|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 3789999885433 2224445566666666666788888887766666666654
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.005 Score=57.03 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=34.2
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccC
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
..+.++.+|+||||.|... -...+...++..+....+++.+.-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 4556789999999998766 4566777788877788888887665
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.028 Score=56.10 Aligned_cols=109 Identities=12% Similarity=0.182 Sum_probs=59.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+.+++.||+|+|||... .++...+.. .+.+++|+.. ..+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~--------~~~~v~yi~~-~~f~~~~~~~l~~-----------~--------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE--------SGGKILYVRS-ELFTEHLVSAIRS-----------G--------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEeeH-HHHHHHHHHHHhc-----------c---------
Confidence 35899999999999854 344444432 2456777764 3444433322221 0
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHC-CCCCcEEEEEccCChhHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL-PQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~ 293 (384)
..+.+.. .+.+.++++|||+|.+.... ....+..++..+ ....|+|+.|-+.|.....+
T Consensus 192 -----------~~~~f~~-------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 192 -----------EMQRFRQ-------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -----------hHHHHHH-------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 0011111 12467899999999876532 234444454433 23566666665556555433
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.09 Score=51.01 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=70.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC-HHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT-RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt-~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
++.+.++||||.|||..-.=-+...... ......+||-+-| |-=|..+.+.+.+.. ++++.+++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~------~~~~kVaiITtDtYRIGA~EQLk~Ya~im-~vp~~vv~~------- 268 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML------KKKKKVAIITTDTYRIGAVEQLKTYADIM-GVPLEVVYS------- 268 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh------ccCcceEEEEeccchhhHHHHHHHHHHHh-CCceEEecC-------
Confidence 6789999999999998632222222111 1222334444433 444444555555544 355444444
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChh-HHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPW-IRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~-~~~ 292 (384)
|.-|...+. .+.+.++|.||=+-+-. |.....+++.++..-.+.--.+.+|||--.. +++
T Consensus 269 --------------~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 269 --------------PKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred --------------HHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 333333322 24556777777665432 2224456666666654445578889997544 455
Q ss_pred HHHHhcC
Q 016712 293 LTNKYLK 299 (384)
Q Consensus 293 ~~~~~l~ 299 (384)
....|-.
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 5565543
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.02 Score=60.22 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.+++-|.+++.. .+..++|.|..|||||.+..--+...+... .-...++|+|+-|+.-|.++.+++....+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-----GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-----CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999865 356789999999999997655554444221 11244699999999999999999988653
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.1 Score=48.63 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=66.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+-++++|++|+|||....--+.. +. ..+.+++++.- .+.-+.++...+.+.. +++ ++..+....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~--------~~g~~V~li~~D~~r~~a~~ql~~~~~~~-~i~--~~~~~~~~d-- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LK--------KQGKSVLLAAGDTFRAAAIEQLEEWAKRL-GVD--VIKQKEGAD-- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HH--------hcCCEEEEEeCCCCCHHHHHHHHHHHHhC-CeE--EEeCCCCCC--
Confidence 45778899999999865433322 21 23566777763 3444444444443333 122 222221100
Q ss_pred HHHHhcCCCEEEECchhH-HHHHHccCCCCCCccEEEEeCcccccC-CChHHHHHHHHHHCC------CCCcEEEEEccC
Q 016712 215 MRALDYGVDAVVGTPGRV-IDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLP------QNRQSMMFSATM 286 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l-~~~l~~~~~~~~~l~~vViDEah~~~~-~~~~~~~~~il~~l~------~~~q~l~~SAT~ 286 (384)
|... ...+.. ....+.++||||=+-+... .....++..+.+..+ ++--++.++||.
T Consensus 139 --------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 139 --------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred --------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence 1111 111110 0123467777776665432 223445566655544 455688889987
Q ss_pred ChhHHHHHHHhc
Q 016712 287 PPWIRSLTNKYL 298 (384)
Q Consensus 287 ~~~~~~~~~~~l 298 (384)
.......+..|.
T Consensus 203 ~~~~~~~~~~f~ 214 (272)
T TIGR00064 203 GQNALEQAKVFN 214 (272)
T ss_pred CHHHHHHHHHHH
Confidence 665555555554
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.04 Score=64.38 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.+++-|.+++..++.. +-.++.|+.|+|||.+ +-.+...+ + ..|.++++++||-.-+..+.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-~-------~~G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-S-------EQGYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-H-------hcCCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 5899999999998875 5688999999999985 23333333 2 2477899999999877665543221110
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCC
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~ 277 (384)
+.......+.. +.-..|...+ + .....+..-++|||||+-.+.. .++..+++.. +.+.
T Consensus 500 -----------Ti~~~l~~l~~--~~~~~tv~~f---l-~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 500 -----------TFITWVKNLFN--DDQDHTVQGL---L-DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNS 558 (1960)
T ss_pred -----------hHHHHHHhhcc--cccchhHHHh---h-cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCC
Confidence 00011111111 1111122222 2 2223345678999999996533 3566667655 4678
Q ss_pred cEEEEEcc
Q 016712 278 QSMMFSAT 285 (384)
Q Consensus 278 q~l~~SAT 285 (384)
++|++-=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877544
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.024 Score=53.90 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=28.1
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
...++|||||+|.+........+..+++..+.++++|+.|.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 34678999999988433345566667777777777776443
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.15 Score=47.34 Aligned_cols=130 Identities=10% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec-C--HHHHHHHHHHHHHhCCCCceEEEECCCCh
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T--RELAKQVEKEFHESAPSLDTICVYGGTPI 211 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P-t--~~La~q~~~~~~~~~~~~~~~~~~g~~~~ 211 (384)
.+..++++|++|+|||..+..-+.. +.. .+..+.++.- + ...+.|+........ ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--~~---------- 132 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTIG--FE---------- 132 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCeEEEEecCCCCHHHHHHHHHHhhhcC--ce----------
Confidence 4467899999999999965443332 211 2344555543 2 134445443333221 22
Q ss_pred HHHHHHHhcCCCEEE-ECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCC-h
Q 016712 212 SHQMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMP-P 288 (384)
Q Consensus 212 ~~~~~~~~~~~~IlV-~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~-~ 288 (384)
+.. .+|..+...+..- -...+.++||||-+=+.... ....++..++....++.-++.+|||.. .
T Consensus 133 ------------~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 133 ------------VIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ------------EEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 221 2344443333211 11235789999988765422 234445555555555555778999865 4
Q ss_pred hHHHHHHHhc
Q 016712 289 WIRSLTNKYL 298 (384)
Q Consensus 289 ~~~~~~~~~l 298 (384)
...+.++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6667777764
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.068 Score=43.18 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHH
Q 016712 139 MIGRARTGTGKTLAF 153 (384)
Q Consensus 139 ~li~a~TGsGKT~~~ 153 (384)
+++.||+|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999853
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.17 Score=50.89 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=81.6
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH-
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL- 218 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 218 (384)
|-+.-.++||+..-++++.+.+.. +-.|.+||.+-+.+-|.|++..+. .++++++.+++|..+..+..+.+
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~-------g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVAS-------GFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhc-------cCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHH
Confidence 334446889999888888777754 457789999999999999999998 67789999999997765544433
Q ss_pred --hcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 219 --DYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 219 --~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
+.| ..++||| +++.++ ++|.++.+||.++...
T Consensus 433 ~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 333 8999999 777766 8899999999987764
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.006 Score=62.48 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCCccEEEEeCcccccCCC-hHHHHHHHHHHCCC-CCcEEEEEccCChhH
Q 016712 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWI 290 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~-~~q~l~~SAT~~~~~ 290 (384)
+.++++|||||+|.+.... ....+..++..+.. +.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 3457899999999876542 33445555555433 567776555555543
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.16 Score=53.56 Aligned_cols=128 Identities=12% Similarity=0.084 Sum_probs=61.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH--HHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL--AKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L--a~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+-+.++||||+|||.+...-+...... ..+.++.++.-...- +.++.+.+.+.. ++++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~-------~G~kkV~lit~Dt~RigA~eQL~~~a~~~-gvpv~----------- 246 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAR-------EGADQLALLTTDSFRIGALEQLRIYGRIL-GVPVH----------- 246 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHH-------cCCCeEEEecCcccchHHHHHHHHHHHhC-CCCcc-----------
Confidence 347899999999988654333222111 112345555443222 333333333333 12221
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChh-HHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~-~~~ 292 (384)
++.+|..+...+.. +++.++|+||=+=+.... ....++..+.....+..-++++|||.... +.+
T Consensus 247 ----------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 247 ----------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred ----------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 22345544444432 335567777766654322 12233333333334455577778876443 344
Q ss_pred HHHHh
Q 016712 293 LTNKY 297 (384)
Q Consensus 293 ~~~~~ 297 (384)
....|
T Consensus 313 i~~~f 317 (767)
T PRK14723 313 VVHAY 317 (767)
T ss_pred HHHHH
Confidence 55555
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.03 Score=56.01 Aligned_cols=109 Identities=12% Similarity=0.137 Sum_probs=59.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.|++|+|||... ..+.+.+... ..+.+++|+.. .++..++...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 35889999999999743 3444444321 23556777665 566666555544310
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~ 289 (384)
+.+..... .+.++++|||||+|.+.... ....+..++..+. ...|+|+.|-..|..
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 00101111 13467899999999775432 3344555555543 345666655544433
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.056 Score=47.26 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=79.1
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH-HHHHHHHHHhCCCCceEEEECCCChH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA-KQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La-~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
.....+++.+++|.|||.+++--++..+ +.|.+|+++-=.+--. .-=...++.+ +++. ....+....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~---------g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~--~~~~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV---------GHGKKVGVVQFIKGAWSTGERNLLEFG-GGVE--FHVMGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH---------HCCCeEEEEEEecCCCccCHHHHHhcC-CCcE--EEECCCCCc
Confidence 3556899999999999999877777776 3477787775333221 0111223332 2222 222221100
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
... ...+--+......+.... ..+.-..+++||+||+-..++.|+ ..++..+++.-|.+.-+|+.--.+|+++
T Consensus 88 ~~~----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 88 WET----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred ccC----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 000 000000000001111111 122345789999999999888875 4566777777777777777666677776
Q ss_pred HHHHH
Q 016712 291 RSLTN 295 (384)
Q Consensus 291 ~~~~~ 295 (384)
.+++.
T Consensus 163 ie~AD 167 (191)
T PRK05986 163 IEAAD 167 (191)
T ss_pred HHhCc
Confidence 66654
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.043 Score=49.76 Aligned_cols=54 Identities=11% Similarity=0.048 Sum_probs=35.3
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..|.-+++.|++|+|||...+-.+...+ . .+..++|++ +.+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~--------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q--------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 3467899999999999986433333322 2 356688888 4444566666666554
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.017 Score=53.54 Aligned_cols=118 Identities=15% Similarity=0.064 Sum_probs=57.4
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE-CCCCh
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPI 211 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~-g~~~~ 211 (384)
+..|.-+++.|++|+|||...+--+.... . ..+..++|+.- .+-..++.+.+.....+....... .....
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~-------~~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 97 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLI-T-------QHGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIYT 97 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHH-H-------hcCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCcccccc
Confidence 44567889999999999985433333332 1 12566888763 233445555554432222211100 00011
Q ss_pred HHHH----HHHhcCCCEE-EE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 212 SHQM----RALDYGVDAV-VG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 212 ~~~~----~~~~~~~~Il-V~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.+.. ..+.....+. +- |++.+...+..-. .-.++++||||..+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 98 LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 1111 1121112222 22 3444444443221 1236889999999987643
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.004 Score=45.92 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 349 LMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 349 ~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.|...++.+..+||+|+.++|++++++|++++.+|+
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vl 37 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVL 37 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEE
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEE
Confidence 567789999999999999999999999999998764
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.009 Score=59.87 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=78.4
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--C-CceEEEECCCCh-HHHHH
Q 016712 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S-LDTICVYGGTPI-SHQMR 216 (384)
Q Consensus 141 i~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~-~~~~~~~g~~~~-~~~~~ 216 (384)
..+.||||||++..--+++.... ....-|+.|.......-....|..-.. . +.-.+.+++... -....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k--------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK--------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh--------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 45789999999876666655432 233477778777666655544433110 0 000111111110 00000
Q ss_pred ---HHhcCCCEEEECchhHHHHHHc---cCC---CCCCccEE-EEeCcccccCCC---------hHHHHHHH-HHHC--C
Q 016712 217 ---ALDYGVDAVVGTPGRVIDLIKR---NAL---NLSEVQFV-VLDEADQMLSVG---------FAEDVEVI-LERL--P 274 (384)
Q Consensus 217 ---~~~~~~~IlV~Tp~~l~~~l~~---~~~---~~~~l~~v-ViDEah~~~~~~---------~~~~~~~i-l~~l--~ 274 (384)
....+..|+++|...|...+.+ +.+ ++.+..+| +=||+|++.... -...++.. +-.+ .
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 1233578999999999877754 233 34555554 559999986432 11112221 1122 3
Q ss_pred CCCcEEEEEccCChhHHHHHHHh
Q 016712 275 QNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 275 ~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
++.-++.+|||.|.+ ......|
T Consensus 154 kd~~~lef~at~~k~-k~v~~ky 175 (812)
T COG3421 154 KDNLLLEFSATIPKE-KSVEDKY 175 (812)
T ss_pred CCceeehhhhcCCcc-ccHHHHh
Confidence 455688889999843 3333343
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=57.35 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhC-----C----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 124 PIQKAVLEPAMQ-----G----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 124 ~~Q~~~i~~i~~-----g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
|+|...+..+.. | +.+++.-|=|.|||.....-++..+.-. ...+..+++.+++++-|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 678877776662 2 3578888999999986554444444321 1346789999999999999999988
Q ss_pred HhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--cCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
......+.....-... .... ..-.|..-..+.+...+.. +...-.+..++|+||+|.+-+......+..-+..
T Consensus 76 ~~i~~~~~l~~~~~~~---~~~~--~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 76 KMIEASPELRKRKKPK---IIKS--NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HHHHhChhhccchhhh---hhhh--hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 8654321111000000 0000 0012222221222222211 1222336789999999987664333333333333
Q ss_pred CCCCCcEEEEE
Q 016712 273 LPQNRQSMMFS 283 (384)
Q Consensus 273 l~~~~q~l~~S 283 (384)
.++.+++..|
T Consensus 151 -r~~pl~~~IS 160 (477)
T PF03354_consen 151 -RPNPLIIIIS 160 (477)
T ss_pred -CCCceEEEEe
Confidence 2455655553
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.06 Score=56.86 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=82.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc------eEEEECCC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD------TICVYGGT 209 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~------~~~~~g~~ 209 (384)
|-.+|+.--.|-|||+- ++..++.++... ...-.++|||+|...+ .-|+++|.++.+++. +..+..-.
T Consensus 696 GsGcILAHcMGLGKTlQ-VvtflhTvL~c~----klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vk 769 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQ-VVTFLHTVLLCD----KLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVK 769 (1567)
T ss_pred CcchHHHHhhcccceeh-hhHHHHHHHHhh----ccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhcc
Confidence 34678888899999984 344444443321 1234579999998765 459999999887532 22222222
Q ss_pred ChHHH---HHHHhcCCCEEEECchhHHHHHHccCC-------------CCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 210 PISHQ---MRALDYGVDAVVGTPGRVIDLIKRNAL-------------NLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 210 ~~~~~---~~~~~~~~~IlV~Tp~~l~~~l~~~~~-------------~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
..... ...+.+.-.|.|.-.+.+..+-..... .-..-++||.||+|.+-+. ...+...+..+
T Consensus 770 r~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~i 847 (1567)
T KOG1015|consen 770 RPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSI 847 (1567)
T ss_pred ChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHH
Confidence 22222 233344446777666665443322211 1234689999999976553 33444555555
Q ss_pred CCCCcEEEEEccCC
Q 016712 274 PQNRQSMMFSATMP 287 (384)
Q Consensus 274 ~~~~q~l~~SAT~~ 287 (384)
...+ .|++|.||-
T Consensus 848 rtkR-RI~LTGTPL 860 (1567)
T KOG1015|consen 848 RTKR-RIILTGTPL 860 (1567)
T ss_pred Hhhe-eEEeecCch
Confidence 4444 566677753
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.044 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.++++.||+|+|||... .-++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999853 3344443
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.021 Score=61.81 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=92.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhh---------hccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC-ceEEE
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFN---------EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-DTICV 205 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~---------~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~-~~~~~ 205 (384)
|+++++.-..|.|||..-+.-.+...-... ........+-+|||+|.. +..||..++....+.. ++..+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccccceEEEE
Confidence 456788888999999976554443321100 001112245699999985 5578999999987654 66555
Q ss_pred ECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--------------CCCCC------CccEEEEeCcccccCCChHHH
Q 016712 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--------------ALNLS------EVQFVVLDEADQMLSVGFAED 265 (384)
Q Consensus 206 ~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--------------~~~~~------~l~~vViDEah~~~~~~~~~~ 265 (384)
.|-...........-.+|||++|...|..-+... ....+ ++=.|++|||+.+-. -...
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~ 530 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSA 530 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHH
Confidence 5543322111122234899999999886655322 11111 122489999995544 3445
Q ss_pred HHHHHHHCCCCCcEEEEEccCChhHHHH
Q 016712 266 VEVILERLPQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 266 ~~~il~~l~~~~q~l~~SAT~~~~~~~~ 293 (384)
..+++.+++. ...-+.|.||...+..+
T Consensus 531 ~a~M~~rL~~-in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 531 AAEMVRRLHA-INRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHhhh-hceeeecCCchhhhhhh
Confidence 5566666643 44667799987665544
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.041 Score=57.96 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
+++-|.+++.. .+.+++|.|..|||||.+.+--+...+... .....++|+|+.|+.-+.++.+++.+..+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-----~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC-----GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78999999865 356899999999999997655554444221 11245699999999999999999987653
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.097 Score=52.34 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=54.8
Q ss_pred HHHHhC-----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEE
Q 016712 130 LEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC 204 (384)
Q Consensus 130 i~~i~~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~ 204 (384)
++.++. |.-+++.|++|+|||...+-- ...+.. .+.+++|+.- .+-..|+......++-+..-..
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~-a~~~a~--------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~l~ 138 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQV-AARLAA--------AGGKVLYVSG-EESASQIKLRAERLGLPSDNLY 138 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHH-HHHHHh--------cCCeEEEEEc-cccHHHHHHHHHHcCCChhcEE
Confidence 445554 346889999999999854333 333221 2567888874 4556677777766553222111
Q ss_pred EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+.... ..+.+...+.. .+.++||||+++.+..
T Consensus 139 ~~~e~------------------~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 139 LLAET------------------NLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred EeCCC------------------CHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 11111 11222233322 3578999999997754
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=51.59 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=69.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.-+++.|++|.|||... +-+...+.. ..+..++|++ ...-..|+..++-....++....+..+.-..++.
T Consensus 194 g~liviag~pg~GKT~~a-l~ia~~~a~-------~~g~~v~~fS-lEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLA-LNIAENVAL-------REGKPVLFFS-LEMSAEQLGERLLASKSGINTGNIRTGRFNDSDF 264 (421)
T ss_pred CceEEEEeCCCCCHHHHH-HHHHHHHHH-------hCCCcEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHH
Confidence 456788999999999854 444333321 1245577776 3334445554443332233322222222111111
Q ss_pred HHH------hcCCCEEEECc-----hhHHHHHHccCCCCCCccEEEEeCcccccC---CChHHHHHHHHHHCC-----CC
Q 016712 216 RAL------DYGVDAVVGTP-----GRVIDLIKRNALNLSEVQFVVLDEADQMLS---VGFAEDVEVILERLP-----QN 276 (384)
Q Consensus 216 ~~~------~~~~~IlV~Tp-----~~l~~~l~~~~~~~~~l~~vViDEah~~~~---~~~~~~~~~il~~l~-----~~ 276 (384)
..+ ..+..+.|.-. +.+...+..-.....++++||||=.|.|.. ......+..+.+.+. -+
T Consensus 265 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~ 344 (421)
T TIGR03600 265 NRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELD 344 (421)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 111 11245555432 333333322111223689999999998763 123344445544432 26
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
+.++++|..
T Consensus 345 i~Vi~lsQl 353 (421)
T TIGR03600 345 VPVVLLAQL 353 (421)
T ss_pred CcEEEeccc
Confidence 788887764
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.03 Score=54.63 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=33.2
Q ss_pred CccEEEEeCcccccCC-ChHHHHHHHHHHCCC-CCcEEEEEccCChhHH
Q 016712 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPPWIR 291 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-~~~~~~~~il~~l~~-~~q~l~~SAT~~~~~~ 291 (384)
++++++||.+|.+... .....+-.++..+.. +.|+|+.|-.+|....
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6889999999987754 355556666666654 4478887777776644
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.057 Score=51.50 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
...+++||||+|.|... -...+..+++..+..+.+++ +++.+
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n~~ 139 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACNTS 139 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeCCc
Confidence 35789999999998654 33445555655555555554 44433
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.067 Score=48.71 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|..+++.|++|+|||...+--+...+. .|..++|++ +.+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~---------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 467999999999999966544555442 366688888 5567777877777655
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.032 Score=62.78 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~ 201 (384)
.|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ..-.++|+|+=|+.-+.++.+++.+.....-
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 6899999997 4688999999999999998766666655431 1224699999999999999888877542110
Q ss_pred eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCc--cEEEEeCccc
Q 016712 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV--QFVVLDEADQ 256 (384)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l--~~vViDEah~ 256 (384)
. .........+.+..-...-|+|-..+...+.+.....-++ .+=|.||...
T Consensus 74 ~----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 0001112222333335678999888876554433222222 4556887775
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.079 Score=48.97 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999865
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.082 Score=60.64 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
.+++.|.+|+..++.+ +-++|.|..|+|||... -.++..+... ....+..++.++||-.-+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL----PESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh----hcccCceEEEECCcHHHHHHHH
Confidence 6899999999999875 56899999999999852 3333333210 0123567888999988776543
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.056 Score=51.71 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHhCCC----cEEEEccCCCchhHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~----d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+|||...+..+.... -.++.||.|.|||..+. .+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~-~~A~~l 46 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE-RLAAAL 46 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH-HHHHHH
Confidence 5899999999887543 48899999999998653 333444
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.21 Score=48.46 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=63.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
.+.+.+.|++|.|||+. +-++...... ..+.+ ++..+.+.++.+.+.++. |+...-
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~------~~k~R----~HFh~Fm~~vh~~l~~~~---------~~~~~l--- 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPI------KRKRR----VHFHEFMLDVHSRLHQLR---------GQDDPL--- 117 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCc------ccccc----ccccHHHHHHHHHHHHHh---------CCCccH---
Confidence 46799999999999984 3333332111 01111 456677777777777754 111100
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCChh
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPW 289 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~ 289 (384)
..+.+.+ .++..+|++||+| +.|.+=.-.+..+++.+ ...+-+|+.|-++|..
T Consensus 118 --------------~~va~~l------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 118 --------------PQVADEL------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred --------------HHHHHHH------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 0111222 2456689999999 45554444455555554 3467777778887765
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.072 Score=50.70 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
..++|+|..++..+. .|+ -.++.||.|.||+..+. .+...+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHh
Confidence 468999999988765 343 48999999999998653 3444443
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.38 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPI 157 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~ 157 (384)
|.-+.++||||+|||.+...-+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3457899999999999754333
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.092 Score=45.20 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=40.6
Q ss_pred CCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
-.++++||+||+-..++.|+ ..++..+++..|++..+|+..-.+|+++.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35789999999998888774 356677787777788888877777877766654
|
Alternate name: corrinoid adenosyltransferase. |
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.097 Score=47.56 Aligned_cols=137 Identities=17% Similarity=0.104 Sum_probs=66.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec---CHHHHHHHHHHHHHhCCCCceE-EEECCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP---TRELAKQVEKEFHESAPSLDTI-CVYGGTP 210 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P---t~~La~q~~~~~~~~~~~~~~~-~~~g~~~ 210 (384)
.|.-+++.|++|+|||...+--+.+.+.. .+..++|++. ..+++..+. ....++... ...+...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~E~~~~~~~~r~~----~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSLEMSKEQLLQRLL----ASESGISLSKLRTGSLS 79 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeCCCCHHHHHHHHH----HHhcCCCHHHHhcCCCC
Confidence 45678999999999998543333433322 2556888873 333333322 111112111 1111111
Q ss_pred hHHH------HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC-
Q 016712 211 ISHQ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP- 274 (384)
Q Consensus 211 ~~~~------~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~- 274 (384)
.... ...+. ...+.|. |++.+...+..-.. -.++++||||=.+.+.... ....+..++..+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~ 157 (242)
T cd00984 80 DEDWERLAEAIGELK-ELPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKL 157 (242)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 1000 11111 2334442 44555554433211 1278999999998764332 2334445544443
Q ss_pred ----CCCcEEEEEcc
Q 016712 275 ----QNRQSMMFSAT 285 (384)
Q Consensus 275 ----~~~q~l~~SAT 285 (384)
.++.++++|-.
T Consensus 158 la~~~~~~ii~~~q~ 172 (242)
T cd00984 158 LAKELNVPVIALSQL 172 (242)
T ss_pred HHHHhCCeEEEeccc
Confidence 36667766643
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.067 Score=53.00 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=23.5
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.-.+|+|||+|++... ....++..+.. ..++++.+|-.+
T Consensus 92 ~~~vL~IDEi~~l~~~----~q~~LL~~le~-~~iilI~att~n 130 (413)
T PRK13342 92 RRTILFIDEIHRFNKA----QQDALLPHVED-GTITLIGATTEN 130 (413)
T ss_pred CceEEEEechhhhCHH----HHHHHHHHhhc-CcEEEEEeCCCC
Confidence 4568999999986532 23344444443 456666666443
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.011 Score=43.33 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 346 TAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 346 ~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...|...+..+..+||+|++++|.++++.|.+++.+|+
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 41 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVL 41 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEE
Confidence 455666779999999999999999999999999987653
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.068 Score=56.16 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=73.9
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH-hCCCCceEEEE
Q 016712 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVY 206 (384)
Q Consensus 128 ~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~-~~~~~~~~~~~ 206 (384)
+.+..+....-++|-+.||+|||.-+.--+++.+... +......+.+--|++..+.-+.+++.+ .+..+.-.|.+
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~n----s~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLEN----SNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhc----cccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 3444455556678899999999998877777777652 112233477777888888888777654 22212111211
Q ss_pred CCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 207 g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
.-...... . ...--|+.+|-+-+++.+... +..+.++|+||.|.-
T Consensus 461 ~vRf~Sa~--p-rpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 461 NVRFDSAT--P-RPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER 505 (1282)
T ss_pred cccccccc--c-ccccceeeeccchhhhhhhhc---ccccccccchhhhhh
Confidence 11000000 0 001368999999988888655 346789999999954
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.025 Score=50.97 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc-------eEEEECC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-------TICVYGG 208 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~-------~~~~~g~ 208 (384)
|..+++.|++|+|||...+--+...+.+ .+..++|++ +.+-..++.+.++.++-++. ...+...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--------~ge~vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--------FGEKVLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--------HT--EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--------cCCcEEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 4679999999999999665445555422 044577777 45556778888887653221 1111111
Q ss_pred CChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 209 ~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
...... . -..++.+...+....-. .+.+.+|||-...+... .+...+..+...+.....+.++++
T Consensus 90 ~~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 110000 0 11223333333221000 12279999998877211 245566666666655555666666
Q ss_pred cC
Q 016712 285 TM 286 (384)
Q Consensus 285 T~ 286 (384)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 63
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.18 Score=50.73 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=73.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECC-CChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG-TPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~-~~~~~ 213 (384)
.|.=+++.|.+|.|||..+ +-+...+.. ..+..++|++ ...-..|+..++-....++...-+..+ .-..+
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~-------~~g~~Vl~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAM-------ASEKPVLVFS-LEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHH-------hcCCeEEEEe-ccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHH
Confidence 3345777899999999844 444433321 1244466654 345556666665554434433222222 11122
Q ss_pred HHH-------HHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC---
Q 016712 214 QMR-------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP--- 274 (384)
Q Consensus 214 ~~~-------~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~--- 274 (384)
+.. .+.....+.|- |+..+...+..-......+++||||=.+.|...+ ...++..+.+.+.
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lA 370 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALA 370 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 211 22223446663 4444443332211112368999999999775332 3344555555442
Q ss_pred --CCCcEEEEEcc
Q 016712 275 --QNRQSMMFSAT 285 (384)
Q Consensus 275 --~~~q~l~~SAT 285 (384)
-++.++++|.-
T Consensus 371 kel~ipVi~lsQL 383 (472)
T PRK06904 371 KELKVPVVALSQL 383 (472)
T ss_pred HHhCCeEEEEEec
Confidence 27888888743
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.24 Score=45.67 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHh----CCC-cEEEEccCCCchhHHH
Q 016712 122 LFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAF 153 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~ 153 (384)
+++.+.+++..+. .+. .+++.|++|+|||...
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 6777777776653 333 5889999999999854
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.06 Score=56.20 Aligned_cols=140 Identities=20% Similarity=0.148 Sum_probs=77.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM 215 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~ 215 (384)
-.|+.-.-|-|||...+..++..=...............|+++|+ .+..|+...+.+..+ .+.+.+++| ....
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g---r~kd- 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG---RTKD- 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc---cccc-
Confidence 568888899999997644433221111100011234557888876 566788888855543 344455555 1111
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.....+.|||++|++.+.. ..+.--.+-.+|+||+|.+...... .......+....+. .+|+|+...
T Consensus 229 ~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~RW-cLtgtPiqn 295 (674)
T KOG1001|consen 229 KSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYRW-CLTGTPIQN 295 (674)
T ss_pred cchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeeccceee-eecCChhhh
Confidence 1122347899999987753 1111224557999999998765322 22222222223333 447776544
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.052 Score=51.69 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=43.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 112 AALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
..|.+.|+ +++.|.+.+.. +..+++++++|+||||||. ++-.++..+... ....++++|-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 34555665 57788887765 4567899999999999996 445555443210 224567777777776
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.06 Score=51.28 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHcCCCCCcHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+.+.|. +++.|...+..+ ..+++++++|+||||||.. +-.++..+... ..+.+++.+-.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS------APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC------CCCceEEEecCCcccc
Confidence 445564 577887776654 4567999999999999984 34555544220 1234677777777763
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.058 Score=48.28 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
.+-+.||+||||.|.+. -...+...++...+.+++.+..-+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 56789999999988653 455566666665555555554444
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.27 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=17.1
Q ss_pred EEEEccCCCchhHHHHH-HHHHHH
Q 016712 139 MIGRARTGTGKTLAFGI-PILDKI 161 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~l-p~l~~l 161 (384)
.++.|..|||||+.++- -++.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 57899999999997764 344444
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.2 Score=55.80 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=65.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|++|+++-+..+++.+++.++++++.+++|+.+..+..+.+ .+ ..+|+||| +.+. .++++.+++
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIie-rGIDIP~v~ 881 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIE-TGIDIPTAN 881 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhh-cccccccCC
Confidence 36789999999999999999999998889999999998766544433 33 58999999 5544 567899999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||++.+|++
T Consensus 882 ~VIi~~ad~f 891 (1147)
T PRK10689 882 TIIIERADHF 891 (1147)
T ss_pred EEEEecCCCC
Confidence 9999999873
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.24 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=17.2
Q ss_pred cE-EEEccCCCchhHHHHHHHHHHHH
Q 016712 138 DM-IGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 138 d~-li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
++ +|.|+||+|||.+. .-++..+.
T Consensus 782 nvLYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 44 59999999999975 33445553
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.21 Score=58.61 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
.+++.|.+|+..++.+ +-++|.|..|+|||... ..++..+.... ...+..++.++||-.-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~~----~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQAF----ESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHHH----HhcCCeEEEEeChHHHHHHHH
Confidence 6899999999998865 45688899999999854 22222221110 023677999999987776553
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.076 Score=56.60 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+++-|.+++.. ....++|.|..|||||.+..--+...+.... -...++|+++-|+.-|.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999975 3568999999999999976555544442210 1234699999999999999999988753
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.28 Score=42.36 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=76.4
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCC-------Ch
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT-------PI 211 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~-------~~ 211 (384)
+.|-...|-|||.+++=-++..+ +.|.+|+|+-=.+--...=...+-+..+++... ..+. ..
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa---------G~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~--~~g~~~~~~~~~~ 92 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA---------GQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWV--RCDLPRCLDTPHL 92 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh---------cCCCEEEEEEEecCCCcchHHHHHHhCCCcEEE--ECCCCCeeeCCCc
Confidence 45556779999999988888776 568888888644432111111122223333322 1111 10
Q ss_pred H-HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 212 S-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 212 ~-~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
. +...... ..+.... ..+.-..+++||+||+-..++.|+ ..++..+++..|.+.-+|+.--.+|+
T Consensus 93 ~~~~~~~~~-----------~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~ 160 (178)
T PRK07414 93 DESEKKALQ-----------ELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPE 160 (178)
T ss_pred CHHHHHHHH-----------HHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 1 1111100 1111111 122235789999999998888875 35677777877777778887777787
Q ss_pred hHHHHHH
Q 016712 289 WIRSLTN 295 (384)
Q Consensus 289 ~~~~~~~ 295 (384)
++.+++.
T Consensus 161 ~Lie~AD 167 (178)
T PRK07414 161 SLLAIAD 167 (178)
T ss_pred HHHHhCC
Confidence 7666543
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.083 Score=55.43 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...+++||||+|.|....+ ..+.++++.-+.++.+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4578999999998876533 33444556555566666544
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.097 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.|+++-|+||+|||... .-++..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHH
Confidence 37999999999999864 33444443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.32 Score=48.08 Aligned_cols=57 Identities=14% Similarity=-0.027 Sum_probs=31.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEE
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTIC 204 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~ 204 (384)
-++++|++|+|||....--+. .+.. .|.+++++.- .+.-+.++.+.+.+.. ++++..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--------~G~kV~lV~~D~~R~aA~eQLk~~a~~~-~vp~~~ 160 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--------KGFKPCLVCADTFRAGAFDQLKQNATKA-RIPFYG 160 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--------CCCCEEEEcCcccchhHHHHHHHHhhcc-CCeEEe
Confidence 478999999999876432222 2211 2455666653 3445555544444432 344433
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.23 Score=48.38 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=50.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.-+++.|++|+|||...+- +...+.. .+.+++|+.-. +-..|+..+..++.-...-..+....
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~--------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l~l~~e~------ 145 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAK--------RGGKVLYVSGE-ESPEQIKLRADRLGISTENLYLLAET------ 145 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEECC-cCHHHHHHHHHHcCCCcccEEEEccC------
Confidence 45689999999999985433 3333321 24568888754 44566666666654222111111111
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
..+.+...+.. .+.++||||+++.+.
T Consensus 146 ------------~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 146 ------------NLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ------------cHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 11223333321 357899999999875
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.3 Score=48.21 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=61.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH-HHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR-ELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~-~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
|.-+.++||||+|||.....-+-..+... ......++...+. .=+.++...+.+.. ++++....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~------~~~~v~~i~~d~~rigalEQL~~~a~il-Gvp~~~v~-------- 255 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH------GADKVALLTTDSYRIGGHEQLRIYGKLL-GVSVRSIK-------- 255 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEecCCcchhHHHHHHHHHHHc-CCceecCC--------
Confidence 45688999999999986532222222110 1122344445442 22333344444443 33332222
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChh-HHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~-~~~ 292 (384)
++..+...+. .+.+.+.++||.+=+.-.. ....++..+.....+...++++|||.... +.+
T Consensus 256 -------------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 256 -------------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred -------------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 2222212221 2456678888876322111 12223333222222344578899997655 445
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
....|-
T Consensus 319 ~~~~f~ 324 (420)
T PRK14721 319 VISAYQ 324 (420)
T ss_pred HHHHhc
Confidence 555553
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.32 Score=46.01 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
...++|||||+|.+... ....+..+++..+.++.+|+.+-
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 34679999999987543 33445555666566666666543
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=53.36 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=82.9
Q ss_pred CCCCcHHHHHHHHHHh---CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 119 ISKLFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.+-|.|.=.+-|+.+. +.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-++++++.++.
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHH
Confidence 3344555555555443 44678899999999999766555433321 367899999999999999888776
Q ss_pred hCCCCc----------eEEEECCCChHHHH--HHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh
Q 016712 196 SAPSLD----------TICVYGGTPISHQM--RALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (384)
Q Consensus 196 ~~~~~~----------~~~~~g~~~~~~~~--~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~ 262 (384)
.+..++ +....|+...-... .....| ..|..++-. .+...-.+.+++|||||+-+...
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~~-- 309 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNPG-- 309 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCHH--
Confidence 553221 11122221100000 000001 122222211 12223335789999999977553
Q ss_pred HHHHHHHHHHCC-CCCcEEEEEccCC
Q 016712 263 AEDVEVILERLP-QNRQSMMFSATMP 287 (384)
Q Consensus 263 ~~~~~~il~~l~-~~~q~l~~SAT~~ 287 (384)
.+..++-.+. .+..++++|.+..
T Consensus 310 --~l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 310 --ALLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred --HHHHHHHHHccCCCceEEEeCCCC
Confidence 3344444443 4677777787753
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.21 Score=46.92 Aligned_cols=19 Identities=37% Similarity=0.279 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~ 154 (384)
|.++++.||+|+|||.++-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999999763
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.076 Score=54.64 Aligned_cols=131 Identities=19% Similarity=0.156 Sum_probs=81.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC----CCceEEEECCCChH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPIS 212 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~----~~~~~~~~g~~~~~ 212 (384)
+-.++..|=-.|||+... +++..+... ..|.+++|.+|.+..++.+++++..... .-.+....| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 568999999999999654 666555431 3588899999999999999998887542 111212222 110
Q ss_pred HHHHHHhcC--CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCCh
Q 016712 213 HQMRALDYG--VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPP 288 (384)
Q Consensus 213 ~~~~~~~~~--~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~ 288 (384)
.-.+.+| ..|.+++- -..+...-.+++++|||||+-+-+. .+..++-.+ ..+.++|.+|.|-..
T Consensus 326 --~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 --SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred --EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 0011112 24444431 1123344457999999999977654 333333333 248999999999654
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.07 Score=49.61 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHh
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 163 (384)
.+..+|+++++++-+.+.+.. ...=++|.||||||||.. +.+++.++..
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 455667777776555542221 112378999999999984 5667777643
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.36 Score=43.49 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=32.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.|..+++.|++|+|||....--+...+. .+..++++.- .+...++.+..+.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 3568999999999999865433333331 2456777764 444556655555443
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.059 Score=51.93 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++|+.||+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 48999999999999865
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.16 Score=51.40 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999854
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.085 Score=47.26 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
++++.||+|.|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999854
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.084 Score=53.63 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.+.+++||||+|.|....+ ..+.+.++..+.++.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4578999999998876533 34445666656677777654
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.33 Score=43.71 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=36.9
Q ss_pred CEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChH----HHHHHHHHHCCCCCcEEEEEccCChhHHHHHHH
Q 016712 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFA----EDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 223 ~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~----~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~ 296 (384)
..++.+.+.+...+....-.....+++||||+-.-... .+. .....+...+...++++.+...-|..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45555555555555332111234578999994322111 011 112223334444567777776656666655554
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=51.61 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=35.4
Q ss_pred CCCCCCccCCC---CCHHHHHHHHHcCCCCCcH---HHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLD---ISQDIVAALARRGISKLFP---IQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~---l~~~l~~~l~~~g~~~~~~---~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+.+.|+++| |+.+.-+.+.+++-.+..| +-+--+++ -+.+++-||+|+|||+.+
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLIA 273 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHHH
Confidence 35678899885 6777666666554322222 22222222 267999999999999964
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.087 Score=55.70 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=27.6
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+..++||||+|++... ....++..+. +.++++.+||-++....+..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChHhhhhh
Confidence 4568999999986532 2233444443 46678888886554443333
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.16 Score=45.16 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
|+=.++.||.++|||.-.+.. +..... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~--------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTY--------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHH--------cCCceEEEEecc
Confidence 445688999999999744333 333322 366788888864
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.089 Score=57.13 Aligned_cols=80 Identities=13% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|++|+++-+..+++.+++.++++++..++|+.+..+....+ .+ ..+|+|+| +.+ ...+++.+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~ii-e~GIDIp~v~ 732 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----TII-ETGIDIPNAN 732 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chh-hcccccccCC
Confidence 46789999999999999999999988889999999998765544433 33 48999999 444 3567899999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||++.+++.
T Consensus 733 ~VIi~~a~~~ 742 (926)
T TIGR00580 733 TIIIERADKF 742 (926)
T ss_pred EEEEecCCCC
Confidence 9999999873
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.14 Score=52.92 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....+++||||+|+|....+. .+.+.++.-+.++.+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 346789999999998765332 33334444445676666654
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.33 Score=50.55 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
...+++||||+|+|....+ ..+-+.++.-+.++.+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 4678999999998876533 3333445544445555554
|
|
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.15 Score=51.11 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
|.=+++.|.+|.|||..+ +-+...+.. ..+..+++++ ...-..|+..++-....++...-+ .|..+. ++
T Consensus 213 g~liviaarpg~GKT~~a-l~ia~~~a~-------~~~~~v~~fS-lEM~~~ql~~R~la~~~~v~~~~i~~g~l~~-~e 282 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFS-MNIGEYVAV-------EYGLPVAVFS-MEMPGTQLAMRMLGSVGRLDQHRMRTGRLTD-ED 282 (460)
T ss_pred CceEEEEeCCCCCccHHH-HHHHHHHHH-------HcCCeEEEEe-CCCCHHHHHHHHHHhhcCCCHHHHhcCCCCH-HH
Confidence 345788999999999854 433333321 1244466554 333344555554332222322212 222222 22
Q ss_pred HHHH------hcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----
Q 016712 215 MRAL------DYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (384)
Q Consensus 215 ~~~~------~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~----- 274 (384)
...+ ..+..+.|. |+..+...+.+-......+++||||=.+.|... .....+..|.+.++
T Consensus 283 ~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAke 362 (460)
T PRK07004 283 WPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKE 362 (460)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 2111 123456653 333343333221112235899999999987532 23345556655543
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.++++|.-
T Consensus 363 l~ipVi~lsQL 373 (460)
T PRK07004 363 LDVPVIALSQL 373 (460)
T ss_pred hCCeEEEEecc
Confidence 27888888764
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.43 Score=47.40 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=14.7
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
-++++|++|+|||....-
T Consensus 102 vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478899999999986543
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.13 Score=53.40 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...+++||||+|+|....+ ..+.++++.-+.+..+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 3568999999998765533 34555566555566566544
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.32 Score=51.05 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=83.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 111 VAALARRGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
-..+.+...+....-|.+.+..++..+ -+++.|+-|=|||.+..+.+.... .. ....+++|.+|+.+=++.
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~------~~~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL------AGSVRIIVTAPTPANVQT 276 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh------cCCceEEEeCCCHHHHHH
Confidence 334555444344444444555555543 578899999999999887773332 21 114579999999998888
Q ss_pred HHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHH
Q 016712 189 VEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (384)
Q Consensus 189 ~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~ 266 (384)
+++-+.+-+.. ++-.+..... ......-.+...|=+.+|.... ..-++||||||=.+. .+-+
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~--g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL 340 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDAL--GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLL 340 (758)
T ss_pred HHHHHHHhHHHhCCccccccccc--cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHH
Confidence 77665553321 1111111100 0000000012335556665432 116789999998652 3344
Q ss_pred HHHHHHCCCCCcEEEEEccCCh
Q 016712 267 EVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 267 ~~il~~l~~~~q~l~~SAT~~~ 288 (384)
..++. ..+.++||.|+..
T Consensus 341 ~~l~~----~~~rv~~sTTIhG 358 (758)
T COG1444 341 HKLLR----RFPRVLFSTTIHG 358 (758)
T ss_pred HHHHh----hcCceEEEeeecc
Confidence 44444 3467888999864
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.17 Score=44.07 Aligned_cols=89 Identities=17% Similarity=0.056 Sum_probs=51.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+=.+++||.+||||.--+.-+-... ..+.++++..|-.. ..+ +...+.-.-|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~---------~~g~~v~vfkp~iD----------~R~-~~~~V~Sr~G~~~----- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYK---------EAGMKVLVFKPAID----------TRY-GVGKVSSRIGLSS----- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHH---------HcCCeEEEEecccc----------ccc-ccceeeeccCCcc-----
Confidence 3468899999999995433332222 23677888888532 111 1122222222111
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
.-++|-.+..+.+.+......+. +++|.|||||-
T Consensus 60 -----~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF 93 (201)
T COG1435 60 -----EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQF 93 (201)
T ss_pred -----cceecCChHHHHHHHHhcccCCC-cCEEEEehhHh
Confidence 24566666667777765433222 88999999995
|
|
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.043 Score=56.01 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=38.6
Q ss_pred CCCCCcHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhh
Q 016712 118 GISKLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~ 164 (384)
+..+|+.+|.+.+..+ -+|+--|+.+|||+|||++-+..++..+...
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 3457999999887764 4688889999999999999888888877554
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.23 Score=49.69 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=71.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
.-+++.|.+|.|||... +-++..+.. ..+..++|++ ...-..|+..++-....++....+..+.-...+..
T Consensus 204 ~livIaarpg~GKT~~a-l~ia~~~a~-------~~g~~v~~fS-lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 204 DLIIVAARPSVGKTAFA-LNIAQNVAT-------KTDKNVAIFS-LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred ceEEEEeCCCCCchHHH-HHHHHHHHH-------hCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHH
Confidence 45788999999999854 444443321 1244466554 44445566666543332333221222221122221
Q ss_pred HH------hcCCCEEEE-C----chhHHHHHHccCCCCCCccEEEEeCcccccCC-----ChHHHHHHHHHHCC-----C
Q 016712 217 AL------DYGVDAVVG-T----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-----GFAEDVEVILERLP-----Q 275 (384)
Q Consensus 217 ~~------~~~~~IlV~-T----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-----~~~~~~~~il~~l~-----~ 275 (384)
.+ ..+..+.|. + ++.+...+..-.....++++||||=.|.|... .....+..+.+.+. -
T Consensus 275 ~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 275 KLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 11 112345553 3 34444433221111136899999999987422 12334555555442 2
Q ss_pred CCcEEEEEccC
Q 016712 276 NRQSMMFSATM 286 (384)
Q Consensus 276 ~~q~l~~SAT~ 286 (384)
++.++++|..-
T Consensus 355 ~i~vi~lsQln 365 (448)
T PRK05748 355 KVPVIALSQLS 365 (448)
T ss_pred CCeEEEecccC
Confidence 68888887753
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.12 Score=48.89 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=42.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 112 AALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+.|.+.|. +++.|.+.+.. +..+++++++|+||||||.. +-.++..+.. .....+++++-.+.|+.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~------~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK------NDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc------cCCCceEEEECCchhhc
Confidence 33445564 56666666655 44567999999999999984 3445554422 01245688888887773
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.21 Score=50.34 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=70.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
|.=+++.|.||.|||... +-+...+.. .+..++|++ ...-..|+..++-....+++..-+ .|..+..+.
T Consensus 192 G~LivIaarpg~GKT~fa-l~ia~~~~~--------~g~~V~~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~ 261 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLC-LNMALKALN--------QDKGVAFFS-LEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEW 261 (472)
T ss_pred CceEEEEcCCCCChHHHH-HHHHHHHHh--------cCCcEEEEe-CcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence 345788999999999854 433333322 244566664 334556666665443333332212 222222111
Q ss_pred ------HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHC---C--
Q 016712 215 ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERL---P-- 274 (384)
Q Consensus 215 ------~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l---~-- 274 (384)
...+. +..+.|- |+..+...++.-.....++++||||=.+.|...+ ...++..|.+.| .
T Consensus 262 ~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAke 340 (472)
T PRK08506 262 ERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARE 340 (472)
T ss_pred HHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11122 2345543 3334443333211122468999999999775322 233444444433 2
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.++++|..
T Consensus 341 l~ipVi~lsQL 351 (472)
T PRK08506 341 LDIPIIALSQL 351 (472)
T ss_pred hCCcEEEEeec
Confidence 27888888754
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.55 Score=40.22 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=31.4
Q ss_pred CCccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 244 ~~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
.+.+++|+|...... +......+..+........-++.++|+-.....+.+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 356788899887643 1123334444444334455577777776666555555554
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.17 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.++++.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999854 4444444
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.15 Score=51.41 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.+....+ ..+.+.++.-+++..+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 45788999999998765433 23344444444555555543
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.3 Score=47.54 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.+....+ ..+...++.-+.++.+|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 34678999999998865422 22333344444555566543
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.48 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp 156 (384)
++.++++||+|+|||....--
T Consensus 206 ~~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999865433
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.13 Score=48.81 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....++|||||||.|... -...+...+..-+.+..+++.+-
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 367899999999998663 34444445554445555555443
|
|
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.54 Score=40.50 Aligned_cols=138 Identities=18% Similarity=0.204 Sum_probs=66.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH-HHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~-La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
+.+-...|-|||.+++=-++..+ +.|.+|+++-=.+- --.-=.+.++.+. ++. +...+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---------G~G~rV~ivQFlKg~~~~GE~~~l~~l~-~~~--~~~~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---------GHGMRVLIVQFLKGGRYSGELKALKKLP-NVE--IERFGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---------CTT--EEEEESS--SS--HHHHHHGGGT---E--EEE--TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---------hCCCEEEEEEEecCCCCcCHHHHHHhCC-eEE--EEEcCCcccccCCC
Confidence 45566789999999887777776 56888988875554 1111122333332 322 22222111000000
Q ss_pred HhcCCCEEEECchhHHHHHH--ccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHHHH
Q 016712 218 LDYGVDAVVGTPGRVIDLIK--RNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~--~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~ 293 (384)
-. .+ .......+. ...+.-...++||+||+-..++.++ ..++..+++.-|...-+|+.--.+|+++.+.
T Consensus 74 ~~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 00 011111111 1233346799999999998888775 4567777777777788888777777777666
Q ss_pred HH
Q 016712 294 TN 295 (384)
Q Consensus 294 ~~ 295 (384)
+.
T Consensus 147 AD 148 (172)
T PF02572_consen 147 AD 148 (172)
T ss_dssp -S
T ss_pred CC
Confidence 54
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.38 Score=49.85 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+.+.++|||||+|.|.... ...+.+.++..+.++.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 5678899999999886542 334444455555667677654
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.66 Score=45.71 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCccEEEEeCcccccC-CChHHHHHHHHHHCC---CCCcEEEEEccCCh-hHHHHHHHh
Q 016712 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLP---QNRQSMMFSATMPP-WIRSLTNKY 297 (384)
Q Consensus 244 ~~l~~vViDEah~~~~-~~~~~~~~~il~~l~---~~~q~l~~SAT~~~-~~~~~~~~~ 297 (384)
.+.++||||=+-+... ......+..+++... +.--++++|||... .+.+....|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4568899996654422 223344455555442 22457888999877 455555555
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.16 Score=48.20 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=55.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
++.+++.|++|+|||... .++...+.. .|..+.++. .-+|+.++...+.. +
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~--------~g~~v~~~~-~~~l~~~lk~~~~~-----------~-------- 206 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK--------KGVSSTLLH-FPEFIRELKNSISD-----------G-------- 206 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCEEEEE-HHHHHHHHHHHHhc-----------C--------
Confidence 468999999999999854 344444432 244455443 33555554433211 0
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH--HHHHHHHH-HCCCCCcEEEEEccCCh
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA--EDVEVILE-RLPQNRQSMMFSATMPP 288 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~--~~~~~il~-~l~~~~q~l~~SAT~~~ 288 (384)
+...+++. +.++++|||||........+. ..+..|+. ++.....+++.|--...
T Consensus 207 ------------~~~~~l~~-------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~ 263 (306)
T PRK08939 207 ------------SVKEKIDA-------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFD 263 (306)
T ss_pred ------------cHHHHHHH-------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHH
Confidence 10111111 457889999999854322232 23344544 33345566665554333
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.18 Score=54.82 Aligned_cols=148 Identities=14% Similarity=0.192 Sum_probs=106.5
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHh-------------
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK------------- 163 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~------------- 163 (384)
+...|.+||| -++++=.++|.. |.+-+..+...-|+|-.+.|=-=.|+=.-+.-+..+.-
T Consensus 710 kdv~FkdLGL--lIIDEEqRFGVk-----~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T 782 (1139)
T COG1197 710 KDVKFKDLGL--LIIDEEQRFGVK-----HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKT 782 (1139)
T ss_pred CCcEEecCCe--EEEechhhcCcc-----HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEE
Confidence 4567888886 355554555654 77777777777777777777777776443333332210
Q ss_pred -----------hhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH----hcCCCEEEEC
Q 016712 164 -----------FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGT 228 (384)
Q Consensus 164 -----------~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~IlV~T 228 (384)
..-...-.+|+|+-||.|..+-..++.+.++++.|..++.+.+|-....+..+.+ ....||+|||
T Consensus 783 ~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 783 FVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred EEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 0000112469999999999999999999999999999999999998876655444 2358999999
Q ss_pred chhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 229 PGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 229 p~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
..+ ..+++..+...+|||-||++
T Consensus 863 -----TII-EtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 863 -----TII-ETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred -----eee-ecCcCCCCCceEEEeccccc
Confidence 444 45678999999999999985
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.3 Score=44.40 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=36.4
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+..|.-++|.|++|+|||...+--+..... .|..++|++- .+=..|+.+++..++
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK---------SGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 445567899999999999966544444431 2556777753 333567777777664
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.099 Score=50.11 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+..+++++++|+||||||. ++-.++..+ ....+++.+=-+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~i---------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREI---------PAIERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhC---------CCCCeEEEecCCCccc
Confidence 34567899999999999998 345555544 2245677665666653
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.15 Score=53.11 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=26.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+.+.+++||||+|.|.... ...+.+.++.-+.++.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876532 334455555555667666654
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.28 Score=48.93 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=70.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE-CCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~-g~~~~~~~ 214 (384)
|.=+++.|++|+|||... +-+...+.. ..+..++|++ ...-..|+.+++-....++....+. |.....+.
T Consensus 195 G~l~vi~g~pg~GKT~~~-l~~a~~~a~-------~~g~~vl~~S-lEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFA-LNIAENAAI-------KEGKPVAFFS-LEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHHH-HHHHHHHHH-------hCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHH
Confidence 345788999999999844 444333321 1244566664 3344455555555443334322222 22222111
Q ss_pred ------HHHHhcCCCEEE-E----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----
Q 016712 215 ------MRALDYGVDAVV-G----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (384)
Q Consensus 215 ------~~~~~~~~~IlV-~----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~----- 274 (384)
...+.+ ..+.| . |+..+...+..-... ..+++||||=.+.+... ....++..+.+.|.
T Consensus 266 ~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 266 EKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 112222 34444 2 334444433321111 34889999999877532 23344555544443
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.++++|-.
T Consensus 344 ~~i~vi~lsql 354 (434)
T TIGR00665 344 LNVPVIALSQL 354 (434)
T ss_pred hCCeEEEEecc
Confidence 37888888764
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.13 Score=43.98 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=28.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
...+++||||+|.|... -...+.+.++.-+.++.+++.|..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECC
Confidence 56889999999998765 455666666666667767666554
|
... |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.32 Score=50.20 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
..+.+++||||+|.|.... ...+.+.++..+.++-+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 3567899999999886553 334445555555566666655 433
|
|
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.45 Score=47.82 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~ 213 (384)
.|.=+++.|.+|.|||..+ +-+...+.. ..+..++|++. ..-..|+..++-....++...-+ .|..+..+
T Consensus 216 ~g~LiviaarPg~GKTafa-lnia~~~a~-------~~~~~v~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e 286 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFA-MNLCENAAM-------DQDKPVLIFSL-EMPAEQLMMRMLASLSRVDQTKIRTGQLDDED 286 (464)
T ss_pred CCceEEEEeCCCCchHHHH-HHHHHHHHH-------hCCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHH
Confidence 3445778899999999854 333333321 12445666653 23445565555443333322212 22222222
Q ss_pred HH------HHHhcCCCEEEE-C----chhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC----
Q 016712 214 QM------RALDYGVDAVVG-T----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP---- 274 (384)
Q Consensus 214 ~~------~~~~~~~~IlV~-T----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~---- 274 (384)
.. ..+.....+.|- + +..+...+..-......+++||||=.|.|...+ ...++..+.+.|+
T Consensus 287 ~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAk 366 (464)
T PRK08840 287 WARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAK 366 (464)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 11 122123345553 2 233333222211122358999999999875222 2344555555443
Q ss_pred -CCCcEEEEEcc
Q 016712 275 -QNRQSMMFSAT 285 (384)
Q Consensus 275 -~~~q~l~~SAT 285 (384)
-++.++++|.-
T Consensus 367 el~ipVi~LsQL 378 (464)
T PRK08840 367 ELNVPVVALSQL 378 (464)
T ss_pred HhCCeEEEEEec
Confidence 27888888743
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.74 Score=38.52 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=30.2
Q ss_pred EEEEeCcccccCCC-------hHHHHHHHHHH-CCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 248 FVVLDEADQMLSVG-------FAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 248 ~vViDEah~~~~~~-------~~~~~~~il~~-l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
++|||=+|.+.... +...+..++.. +++++.+++.|.+ ..... ....+.....+.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~--~~~~~-~~~~~~~~~~~~l 147 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP--RAFPD-LRRRLKQAQILEL 147 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC--ChHHH-HHHhcCCCcEEEE
Confidence 48999999887632 22334445554 4556776665543 22222 4444544444444
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.043 Score=54.77 Aligned_cols=18 Identities=33% Similarity=0.224 Sum_probs=15.0
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
.+|++||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999997633
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.85 Score=43.46 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCccEEEEeCcccccC-CChHHHHHHHHHHC------CCCCcEEEEEccCChhHHHHHHHhc
Q 016712 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERL------PQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 244 ~~l~~vViDEah~~~~-~~~~~~~~~il~~l------~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
.+.++||||=+-++.. ...-.++..+.+.+ .+..-++.++||........+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 4578888887776542 22334555555432 2334578889997665555556654
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.24 Score=52.98 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=26.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
...+++||||+|+|... -...+.++++.-+.++.+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 46789999999988544 223344444544455666664 444443
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.026 Score=48.75 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=54.8
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 219 (384)
++.|+-|-|||.+..+.+...+.. ...+++|-+|+.+=++.+++.+......+....-. ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK-KKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccccc-cccccccccccc
Confidence 578999999999776665443321 22479999999998888776665543322211100 000000000111
Q ss_pred cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 220 ~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.+..|-+..|+.+... ....+++|||||=.+. .+.+..++ .....++||.|...
T Consensus 72 ~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll----~~~~~vv~stTi~G 125 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLL----RRFPRVVFSTTIHG 125 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHH----CCSSEEEEEEEBSS
T ss_pred ccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHH----hhCCEEEEEeeccc
Confidence 2356767777655322 1245889999998642 23334443 34557788999864
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.094 Score=45.54 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=27.7
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
.+++++++.|++|+|||..+. .+...+.. .|..++++ ...+|+..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~-ai~~~~~~--------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAV-AIANEAIR--------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHH-HHHHHHHH--------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHH-HHHHHhcc--------CCcceeEe-ecCceeccc
Confidence 357899999999999999753 34444433 24556664 455665554
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.38 Score=46.01 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHhC--CC---cEEEEccCCCchhHHHHH
Q 016712 122 LFPIQKAVLEPAMQ--GR---DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~--g~---d~li~a~TGsGKT~~~~l 155 (384)
.+|||...|..+.. ++ -+++.||.|.|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 37888888888763 32 589999999999986533
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.87 Score=39.60 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
....++|||||+|.+... ....+...++..+++.-+|+.
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 467789999999998654 233344444443334444444
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=49.48 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=31.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCC-cHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 99 LDISKLDISQDIVAALARRGISKL-FPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..|+..-|++.+.+.+++.-..+- |.--+. --+|+++-||+|+|||+.+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a------pfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQA------PFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccc------hhhheeeeCCCCCCchHHH
Confidence 447777789888888776432211 110000 0169999999999999854
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.35 Score=49.48 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=26.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|+|... -...+...++.-+..+.+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 356789999999998664 2334445555555566666655
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.058 Score=51.88 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+..+++++++|+||||||.. +-.++..+ ....+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i---------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI---------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc---------CCCCCEEEECCCcccc
Confidence 455778999999999999983 34444443 1234577777887764
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.25 Score=49.83 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=69.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH-
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ- 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~- 214 (384)
.=++|.|.+|.|||... +-+...+.. ..+..++|.+. ..-..|+..++.....++...-+ .|..+..+.
T Consensus 230 ~LivIaarPg~GKTafa-l~iA~~~a~-------~~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~ 300 (476)
T PRK08760 230 DLIILAARPAMGKTTFA-LNIAEYAAI-------KSKKGVAVFSM-EMSASQLAMRLISSNGRINAQRLRTGALEDEDWA 300 (476)
T ss_pred ceEEEEeCCCCChhHHH-HHHHHHHHH-------hcCCceEEEec-cCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHH
Confidence 45788999999999854 444333321 12444666643 33345666666554433332222 222222111
Q ss_pred -----HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----C
Q 016712 215 -----MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-----Q 275 (384)
Q Consensus 215 -----~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~-----~ 275 (384)
...+. ...+.|. |++.+...+..-. .-.++++||||=.+.|... ....++..|.+.|. -
T Consensus 301 ~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel 378 (476)
T PRK08760 301 RVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL 378 (476)
T ss_pred HHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 11122 2445544 3344433333211 1235899999999977422 22334555544432 2
Q ss_pred CCcEEEEEcc
Q 016712 276 NRQSMMFSAT 285 (384)
Q Consensus 276 ~~q~l~~SAT 285 (384)
++.++++|..
T Consensus 379 ~ipVi~lsQL 388 (476)
T PRK08760 379 NVPVIALSQL 388 (476)
T ss_pred CCEEEEeecc
Confidence 7788888754
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.28 Score=47.15 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHhC--C---CcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQ--G---RDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~--g---~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.+|||...+..+.. + +-.++.||.|.||+..+ ..+.+.+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHc
Confidence 47888888887664 3 25789999999999866 33334443
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.095 Score=48.33 Aligned_cols=142 Identities=16% Similarity=0.090 Sum_probs=70.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.=+++.|.+|.|||...+=-+.+.. . ..+..++|++.-- -..++..++-....++...-+..+.-...+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a-~-------~~~~~vly~SlEm-~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAA-L-------NGGYPVLYFSLEM-SEEELAARLLARLSGVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHH-H-------TTSSEEEEEESSS--HHHHHHHHHHHHHTSTHHHHHCCGCHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHH-H-------hcCCeEEEEcCCC-CHHHHHHHHHHHhhcchhhhhhccccCHHHH
Confidence 34578899999999985544444333 2 1246788887531 1122333322222122211111222122222
Q ss_pred HH-------HhcCCCEEEECch----hHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----C
Q 016712 216 RA-------LDYGVDAVVGTPG----RVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-----Q 275 (384)
Q Consensus 216 ~~-------~~~~~~IlV~Tp~----~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~-----~ 275 (384)
.. +....-.+..+|. .+...+..-.....++++||||=.|.+... +....+..+.+.|. .
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~ 169 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL 169 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 22 2222223334433 444444332222368899999999987753 24455555544442 2
Q ss_pred CCcEEEEEccC
Q 016712 276 NRQSMMFSATM 286 (384)
Q Consensus 276 ~~q~l~~SAT~ 286 (384)
++.++++|..-
T Consensus 170 ~i~vi~~sQln 180 (259)
T PF03796_consen 170 NIPVIALSQLN 180 (259)
T ss_dssp TSEEEEEEEBS
T ss_pred CCeEEEccccC
Confidence 77888887753
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.16 Score=45.89 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=31.5
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCC-CCcEEEEEccCChhHHH---HHHHhcCCCeEEEecC
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSATMPPWIRS---LTNKYLKNPLTVDLVG 308 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~~SAT~~~~~~~---~~~~~l~~~~~i~~~~ 308 (384)
++|+||++|.+.. -...+-.++..+.. ..++|+.|.|.|+.... -+..-+.....+.+.+
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~ 152 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCC
Confidence 3799999997632 23445556655544 45555544444443221 1333334445555543
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.73 Score=43.19 Aligned_cols=18 Identities=33% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 358999999999999865
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.53 Score=43.19 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.|..+++.|++|+|||...+--+...+. .+..++|++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~---------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 3467899999999999865444444442 355677777 5556666777776664
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.4 Score=43.41 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||....--+...+ ..+.+++|+.=- +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~---------~~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL---------KQGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH---------hCCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 45688999999999986544444433 135667777754 33456667676654
|
|
| >PHA03372 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.64 Score=47.47 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=81.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH----HHhCCCCceEEEECCCChH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF----HESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~----~~~~~~~~~~~~~g~~~~~ 212 (384)
+-.+..-|--.|||+ ++.|++..++.. -.|-++.|+++-+-.++-+++++ +++++.-.+...-+
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~----- 270 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD----- 270 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-----
Confidence 567888899999998 788888888762 45788999999988887766554 44554332222111
Q ss_pred HHHHHHhcCCCEEEECchhH-----HHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccC
Q 016712 213 HQMRALDYGVDAVVGTPGRV-----IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATM 286 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l-----~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~ 286 (384)
--|.+.-|+.= +.....+.+.-.+.++++|||||-+- ...+..|+-.+. +++.+|..|.|-
T Consensus 271 ---------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 ---------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ---------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 12333333221 12223345566789999999999653 234555666554 578899999885
|
|
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.65 Score=46.77 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=71.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
|.=+++.|.+|.|||..+ +-+...+.. ..+..++|.+. ..-..|+..++-....++...-+ .|..+..+.
T Consensus 224 G~LiiIaarPgmGKTafa-lnia~~~a~-------~~g~~V~~fSl-EM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFA-MNLCENAAM-------LQDKPVLIFSL-EMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHH-------hcCCeEEEEec-cCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 345677899999999844 444333321 12445666643 23445555555443333332222 232222221
Q ss_pred H------HHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----
Q 016712 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (384)
Q Consensus 215 ~------~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~----- 274 (384)
. ..+.....+.|- |+..+...+..-......+++||||=.|.|... ....++..|.+.|+
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 374 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE 374 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1 112123455553 333443333221112236899999999977522 23445566655543
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.+|++|-.
T Consensus 375 l~ipVi~LsQL 385 (471)
T PRK08006 375 LQVPVVALSQL 385 (471)
T ss_pred hCCeEEEEEec
Confidence 27888888854
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.21 Score=46.73 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
+.++++||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998653
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=94.30 E-value=1 Score=44.63 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.9
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
-++++|++|+|||....-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999987543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.71 Score=48.75 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=38.1
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
+-=++|+|+-|.+.+.-....+..+++..|++...++.|=+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 34589999999999988888999999999999999998877653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.79 Score=50.02 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=35.3
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.--+||||++|.+.+......+..+++..+.+..+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 33579999999987665667888899999989999888877544
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.43 Score=45.57 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.+|||...+..+. +|+ -.++.||.|.||+..+. .+...+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~-~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR-ALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH-HHHHHHc
Confidence 4688887777654 443 57899999999998653 3334443
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.3 Score=49.98 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=25.7
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.|....+ ..+.+.++..+.++.+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998865433 23444445545566666655
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.16 Score=52.38 Aligned_cols=97 Identities=24% Similarity=0.291 Sum_probs=59.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.=++++||+|.|||-. +..+++.+.+-+ +.+..||.....+.
T Consensus 350 GpILcLVGPPGVGKTSL---------------------------------gkSIA~al~Rkf----vR~sLGGvrDEAEI 392 (782)
T COG0466 350 GPILCLVGPPGVGKTSL---------------------------------GKSIAKALGRKF----VRISLGGVRDEAEI 392 (782)
T ss_pred CcEEEEECCCCCCchhH---------------------------------HHHHHHHhCCCE----EEEecCccccHHHh
Confidence 34578899999999963 233333333322 23455666554444
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
+.-++ --+=+-||++..-+...... =-++++||+|.|.....+.--..+++-|.
T Consensus 393 RGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 393 RGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 43322 22335699999988764321 12689999999998766655666666663
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.68 Score=46.99 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchhHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~l 155 (384)
+.+|++||.|+|||.++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999997633
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.57 Score=46.96 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.-+++.|++|+|||...+- +...+.. .+.+++|+..- +-..|+..++.++.-......+...
T Consensus 94 GsvilI~G~pGsGKTTL~lq-~a~~~a~--------~g~kvlYvs~E-Es~~qi~~ra~rlg~~~~~l~~~~e------- 156 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ-VACQLAK--------NQMKVLYVSGE-ESLQQIKMRAIRLGLPEPNLYVLSE------- 156 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCcEEEEECc-CCHHHHHHHHHHcCCChHHeEEcCC-------
Confidence 45689999999999985543 3333322 24568888753 4556777666665422111111111
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
.+.+.+...+.. .+.++||||.++.+.
T Consensus 157 -----------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 -----------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred -----------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 122334444432 246799999999765
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.11 Score=49.27 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=44.4
Q ss_pred CCCCCcHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
.|..+++.|...+..+..++ |++++|.||||||.. +-++..... ..-+++.+--|.||--+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC--------CcccEEEEeehhhhccC
Confidence 45578999999988877665 999999999999983 333332221 23378999888888544
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.11 Score=49.57 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=36.7
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCC-CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGIS-KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
-+.+|.+.|=-+.+.++|.+.-.- --+|-.-.--..+...+.+++-||+|+|||.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 346788888778888888875221 112222221222334578999999999999965
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.17 Score=44.20 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=29.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHH-hCCCcEEEEccCCCchhHH
Q 016712 113 ALARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~ 152 (384)
.|.+.|+ .++.|...+... ..|..++++||||+|||..
T Consensus 3 ~l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 3 DLIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3455564 678888877764 4678999999999999984
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.53 Score=44.58 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=65.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCC-hHHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP-ISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
.+.-+++.+|+.+.++|....+++.++...+..+++... ..+....+.+| .+|+|+| ..+.+ .+.+.+++.+
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILER-GVTfp~vdV~ 377 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILER-GVTFPNVDVF 377 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhc-ccccccceEE
Confidence 355699999999999999999988887777666666544 44555666665 7899999 56654 5568999999
Q ss_pred EEeCcccccCC
Q 016712 250 VLDEADQMLSV 260 (384)
Q Consensus 250 ViDEah~~~~~ 260 (384)
|++-.|+++..
T Consensus 378 Vlgaeh~vfTe 388 (441)
T COG4098 378 VLGAEHRVFTE 388 (441)
T ss_pred EecCCcccccH
Confidence 99999987654
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.52 Score=50.23 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=26.7
Q ss_pred cEEEEeCcccccCCCh----HHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 247 QFVVLDEADQMLSVGF----AEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 247 ~~vViDEah~~~~~~~----~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
.+|+|||+|.+...|- ..+...+++.+-....+.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999875432 2344444554333445666667766554
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.26 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=16.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
-+++.||.|+|||.++. .+...+
T Consensus 38 a~Lf~GppGtGKTTlA~-~lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR-LIAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHH
Confidence 35999999999999763 334444
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.41 Score=48.62 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=64.3
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
=+++.|.+|.|||...+ -+...+.. ..+..++|+ ....-..|+..++-....++....+..+.-..++...
T Consensus 267 Liiiaarpg~GKT~~al-~~a~~~a~-------~~g~~v~~f-SlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~ 337 (505)
T PRK05636 267 MIIVAARPGVGKSTLAL-DFMRSASI-------KHNKASVIF-SLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEK 337 (505)
T ss_pred eEEEEeCCCCCHHHHHH-HHHHHHHH-------hCCCeEEEE-EeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHH
Confidence 46788999999998544 33332211 123446665 3333334444443332222322222222212222221
Q ss_pred H------hcCCCEEEE-Cch----hHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC---C--CC
Q 016712 218 L------DYGVDAVVG-TPG----RVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP---Q--NR 277 (384)
Q Consensus 218 ~------~~~~~IlV~-Tp~----~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~---~--~~ 277 (384)
+ .....+.|- +|+ .+...++.-.. -..+++||||=.|.|.... ....+..+.+.|. + ++
T Consensus 338 ~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~i 416 (505)
T PRK05636 338 LVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDV 416 (505)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 1 112445553 333 23222222111 1358999999999875321 2234444544432 2 78
Q ss_pred cEEEEEc
Q 016712 278 QSMMFSA 284 (384)
Q Consensus 278 q~l~~SA 284 (384)
.++++|.
T Consensus 417 pVi~lsQ 423 (505)
T PRK05636 417 PLIAISQ 423 (505)
T ss_pred eEEEEee
Confidence 8888875
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.62 Score=45.06 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....+++||||+|.|... -...+-++++.-+.+..++++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEEC
Confidence 346789999999998654 33445555666555666666653
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.56 Score=47.59 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=70.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHh-hhhcc------CCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIK-FNEKH------GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~-~~~~~------~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~ 209 (384)
.=+++.|.||.|||..++ -+...+.. ..... ....+..++|+ ....-..|+..++-....++....+..+.
T Consensus 218 ~livIaarpg~GKT~~al-~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~~~~i~~~~ 295 (497)
T PRK09165 218 DLIILAGRPSMGKTALAT-NIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEISSSKIRRGK 295 (497)
T ss_pred ceEEEEeCCCCChHHHHH-HHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCCHHHHhcCC
Confidence 347889999999998543 33333321 10000 00124556666 44445566666665543334322222222
Q ss_pred ChHHHHHHHh------cCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC------hHHHHHHHHHH
Q 016712 210 PISHQMRALD------YGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG------FAEDVEVILER 272 (384)
Q Consensus 210 ~~~~~~~~~~------~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~------~~~~~~~il~~ 272 (384)
-..++...+. ....+.|- |++.+...+.+-.. -..+++||||=.|.|...+ ...++..+.+.
T Consensus 296 l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~ 374 (497)
T PRK09165 296 ISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQG 374 (497)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHH
Confidence 1222221111 12345543 33444443432111 2358999999999775321 22345555443
Q ss_pred CC-----CCCcEEEEEcc
Q 016712 273 LP-----QNRQSMMFSAT 285 (384)
Q Consensus 273 l~-----~~~q~l~~SAT 285 (384)
|. -++.++++|.-
T Consensus 375 LK~lAkel~ipVi~lsQL 392 (497)
T PRK09165 375 LKALAKELNIPVIALSQL 392 (497)
T ss_pred HHHHHHHhCCeEEEeecc
Confidence 32 27778887763
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.3 Score=50.57 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.|... -...+.+.++.-+.++-+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457889999999987654 2334455555545556566544
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.43 Score=48.50 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred CHHHHHHHHHcCCCCCcH----HHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe
Q 016712 107 SQDIVAALARRGISKLFP----IQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~----~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~ 180 (384)
++-++..|++.-=.+++. +|.+==+.+. .++-++|+|..|||||.+++--+...+..++.. -.+..+||+.
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~---l~~k~vlvl~ 267 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP---LQAKPVLVLG 267 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc---cccCceEEEc
Confidence 344667777653333433 3333222233 235689999999999998765554444333221 1234499999
Q ss_pred cCHHHHHHHHHHHHHhCC
Q 016712 181 PTRELAKQVEKEFHESAP 198 (384)
Q Consensus 181 Pt~~La~q~~~~~~~~~~ 198 (384)
|.+-+..-+.+.+-+++.
T Consensus 268 PN~vFleYis~VLPeLGe 285 (747)
T COG3973 268 PNRVFLEYISRVLPELGE 285 (747)
T ss_pred CcHHHHHHHHHhchhhcc
Confidence 999999888888877774
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.14 Score=52.76 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=84.5
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH-HHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE-KEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~-~~~~~~~ 197 (384)
..+|+|.+.++.+... +.++++.++-+|||.+.+-.+...+ . ....-+|++.||.++|.+.. .++..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~-------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-D-------QDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-E-------eCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5789999999887654 5799999999999996544443333 2 23445999999999999876 3455443
Q ss_pred CCCce--EEEEC----CCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC--ChHHHHHHH
Q 016712 198 PSLDT--ICVYG----GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV--GFAEDVEVI 269 (384)
Q Consensus 198 ~~~~~--~~~~g----~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~--~~~~~~~~i 269 (384)
...+. ..+.. ..........+. |..+.++..++- ..+.-..++++++||.|.+... +-+.-+...
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la 160 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELA 160 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHH
Confidence 22221 01111 011111111122 334444432211 1222345889999999998532 122223333
Q ss_pred HHHCC--CCCcEEEEEccCChh
Q 016712 270 LERLP--QNRQSMMFSATMPPW 289 (384)
Q Consensus 270 l~~l~--~~~q~l~~SAT~~~~ 289 (384)
.++.. .....+++..|+...
T Consensus 161 ~~R~~tf~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 161 EKRTKTFGSNRKILRISTPTIE 182 (557)
T ss_pred HHHHhhhccCcEEEEeCCCCCC
Confidence 33221 133455566666544
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.49 Score=48.18 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=27.3
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
....+++||||+|.|... -...+...++.-++.+.+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 457889999999988654 3334455555556677777655
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.34 Score=49.25 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCC
Q 016712 93 SSKDEGLDISKLDISQDIVAALARR--GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (384)
Q Consensus 93 ~~~~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 170 (384)
.......+|+++|=-...+..|.++ .+.+|-.++.--+ .--+.+|+.||+|+|||.
T Consensus 181 ~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~------------------- 238 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTS------------------- 238 (802)
T ss_pred CCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHH-------------------
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
||+-+..++.--+-.+....+.+|.+-..+ +++..++.+..-.-..+ |+
T Consensus 239 --------------lA~AiAgel~vPf~~isApeivSGvSGESE---------------kkiRelF~~A~~~aPci--vF 287 (802)
T KOG0733|consen 239 --------------LANAIAGELGVPFLSISAPEIVSGVSGESE---------------KKIRELFDQAKSNAPCI--VF 287 (802)
T ss_pred --------------HHHHHhhhcCCceEeecchhhhcccCcccH---------------HHHHHHHHHHhccCCeE--EE
Q ss_pred EeCccccc---CCChHHHHHHHHHHC-----------CCCCcEEEEEccC-ChhHHHHHHHhcCCCeEEEe
Q 016712 251 LDEADQML---SVGFAEDVEVILERL-----------PQNRQSMMFSATM-PPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 251 iDEah~~~---~~~~~~~~~~il~~l-----------~~~~q~l~~SAT~-~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||+|.+. +++-...-..|..+| .....+++..||- |+.+..-+++--+-...|.+
T Consensus 288 iDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l 358 (802)
T KOG0733|consen 288 IDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICL 358 (802)
T ss_pred eecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeee
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.89 Score=47.20 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~l 155 (384)
+.+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999996533
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.49 Score=45.05 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
..+|||...+..+. .|+ -.++.||.|.||+..+ ..+.+.+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~l 49 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRAL 49 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHH
Confidence 36788888887765 343 5899999999999755 3333444
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.48 Score=49.18 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=24.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
...+++||||+|+|....|. .+.+.++.-+.++.+|+.+ |-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T-td~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT-TDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE-CCc
Confidence 46789999999998765332 2333333334455565544 433
|
|
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.3 Score=38.41 Aligned_cols=142 Identities=22% Similarity=0.200 Sum_probs=74.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH-HHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
++|-...|-|||.+++=-++..+ +.|.++.|+-=.+-=...= ...+..+...+....+..+.....+...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~---------GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~ 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL---------GHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDRE 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh---------cCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcH
Confidence 66778889999999887777776 5577887775222111110 1222222111211111111000000000
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.|+ ..+...+.... ..+.-..+++||+||....+..++ ..++..+++.-|.+..+|+.--..|+.+.+++.
T Consensus 102 ----~d~--~aa~~~w~~a~-~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 102 ----ADI--AAAKAGWEHAK-EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred ----HHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 011 11111111111 111223689999999998887764 356677777767777777766667888777765
Q ss_pred H
Q 016712 296 K 296 (384)
Q Consensus 296 ~ 296 (384)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 4
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.65 Score=45.18 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
....+++||||+|.|... -...+-+.++.-+.++.+|++|..
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 356789999999988654 334455555554555656665554
|
|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.8 Score=41.44 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=63.7
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC-CEEEEEecCHHHHHHH----HHHHHHhCCC-CceEEE-ECCCChH
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN-PLCLVLAPTRELAKQV----EKEFHESAPS-LDTICV-YGGTPIS 212 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~-~~~lvl~Pt~~La~q~----~~~~~~~~~~-~~~~~~-~g~~~~~ 212 (384)
++.++.|+|||.+..+.++..+.. ..+ ..+++. ++..-+.+. ...+....+. +..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~-------~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT-------RPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS-------SSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhh-------CCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE-
Confidence 578899999999887777776654 222 445555 665555543 2333344333 221111 001000
Q ss_pred HHHHHHhcCCCEEEECchhH--HHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccC--Ch
Q 016712 213 HQMRALDYGVDAVVGTPGRV--IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM--PP 288 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l--~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~--~~ 288 (384)
.+.+|..|.+.+-+.- ..-+. -..++++++||+-.+.+..+...+........ ....+.+|.|+ ..
T Consensus 72 ----~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 72 ----ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGG 141 (384)
T ss_dssp ----EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSS
T ss_pred ----EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCC
Confidence 0134556666663321 11222 14678999999987765534333333333222 22222444433 33
Q ss_pred hHHHHHHHhcCCC
Q 016712 289 WIRSLTNKYLKNP 301 (384)
Q Consensus 289 ~~~~~~~~~l~~~ 301 (384)
....+......+.
T Consensus 142 ~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 142 WFYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHHCTS
T ss_pred ceeeeeehhhcCC
Confidence 4556666666555
|
The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.34 Score=49.88 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~l 155 (384)
+.+|+.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999996533
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.7 Score=49.36 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=30.9
Q ss_pred CCCCccCCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-....++.+.++ .+....|.....+ .+..++.+++.||+|+|||...
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHL-GIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc-CCCCCceEEEECCCCCChHHHH
Confidence 346677776555555555442 1111111111111 1234578999999999999853
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.8 Score=39.91 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
|.-+++.|++|+|||...+--+.+.+ ..+..++|++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a---------~~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA---------SRGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---------hCCCcEEEEEe
Confidence 45689999999999996544444433 13566888873
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.06 Score=52.78 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=38.8
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+++++|+||+|||.++++|-+... +..++|+-|--++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----------~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----------CCCEEEEccchhHHHHHHHHHHHcC
Confidence 478999999999999988876432 3458999999999987776666543
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=1 Score=46.96 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
.+.+-+++||||+|.|.... ...+...++.-+...-+|+.+ |- ...+..........+.+.
T Consensus 124 ~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t-~~---~~kLl~TI~SRc~~vef~ 184 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT-TE---LHKIPATIASRCQRFNFK 184 (620)
T ss_pred hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CC---hhhhhHHHHhhceEEecC
Confidence 35677899999999986532 223333344333344444444 32 234444444344455543
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.65 Score=47.88 Aligned_cols=20 Identities=35% Similarity=0.258 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchhHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp 156 (384)
+-.|++||.|+|||.++-+-
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34789999999999876443
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.77 Score=45.11 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=26.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
....+++||||+|+|... ....+-+.++.-+++..+|+ ++|-+..
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL-~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLL-CAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEE-EECChHH
Confidence 356789999999998654 23334444444344544444 4443433
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.2 Score=46.60 Aligned_cols=177 Identities=16% Similarity=0.222 Sum_probs=105.1
Q ss_pred CCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 104 LDISQDIVAALARR---GISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 104 l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
+-+-+.+.+.++-. |+..+++--.+.+.... .|-.+|+.-..|-|||+-. +....-++.+ ...+.||+
T Consensus 245 iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQV-isF~diflRh------T~AKtVL~ 317 (1387)
T KOG1016|consen 245 IFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQV-ISFSDIFLRH------TKAKTVLV 317 (1387)
T ss_pred eeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEE-eehhHHHhhc------CccceEEE
Confidence 34556666666543 55556666666665544 3557899999999999832 2222222221 34678999
Q ss_pred EecCHHHHHHHHHHHHHhCCC-----------CceEEEECCCChHH----HHHHHhcCCCEEEECchhHHHHHHc-----
Q 016712 179 LAPTRELAKQVEKEFHESAPS-----------LDTICVYGGTPISH----QMRALDYGVDAVVGTPGRVIDLIKR----- 238 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~-----------~~~~~~~g~~~~~~----~~~~~~~~~~IlV~Tp~~l~~~l~~----- 238 (384)
|+|-..|- -|+.+|..+.+. +.+.++..+..... .+..+...-.|+..-.+.+.-+...
T Consensus 318 ivPiNTlQ-NWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~ 396 (1387)
T KOG1016|consen 318 IVPINTLQ-NWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKK 396 (1387)
T ss_pred EEehHHHH-HHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhccccc
Confidence 99988774 478888776543 33444544443322 2333444456777777765333221
Q ss_pred c-------C-----CC-------------------CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 239 N-------A-----LN-------------------LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 239 ~-------~-----~~-------------------~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
+ . +. -..-++||.||-|++-.. ...+...++.++..+++++....+.
T Consensus 397 grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~--~A~iS~aLk~IrtrRRiVLTGYPLQ 474 (1387)
T KOG1016|consen 397 GRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNI--TAEISMALKAIRTRRRIVLTGYPLQ 474 (1387)
T ss_pred CCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccc--hHHHHHHHHHhhhceeEEEeccccc
Confidence 0 0 00 122478999999998664 3455666777777777777655555
Q ss_pred hhH
Q 016712 288 PWI 290 (384)
Q Consensus 288 ~~~ 290 (384)
+.+
T Consensus 475 NNL 477 (1387)
T KOG1016|consen 475 NNL 477 (1387)
T ss_pred cch
Confidence 543
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.35 Score=50.05 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchhHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp 156 (384)
..+|+.||.|+|||.++.+-
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999976443
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.3 Score=49.17 Aligned_cols=18 Identities=39% Similarity=0.335 Sum_probs=14.9
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
.+|+.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986533
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.29 Score=47.00 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
|+-+.+.||+|+|||...+-.+.... ..+..++||..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~---------~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ---------KAGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---------HcCCcEEEECCccchHH
Confidence 45688999999999997655544443 23667888887665554
|
|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.11 Score=46.91 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.2
Q ss_pred EEEEccCCCchhHH
Q 016712 139 MIGRARTGTGKTLA 152 (384)
Q Consensus 139 ~li~a~TGsGKT~~ 152 (384)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.32 Score=46.31 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
|.-+.+.||+|+|||..++-.+.... . .+..++|+..-..+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~-~--------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQ-K--------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCcEEEEcccchhHH
Confidence 45688999999999996644444332 2 3566888865544443
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.12 Score=52.16 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=40.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++++.||||||||..+++|.+-.. +.-++|.-|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999976321 2258999999999988887777765
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.31 Score=47.62 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.6
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
+-.|+.++++||+|+|||...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH
Confidence 346788999999999999853
|
Members of this family differ in the specificity of RNA binding. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.74 Score=45.33 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.6
Q ss_pred cEEEEccCCCchhHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp 156 (384)
.+|+.||.|+|||.++..-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999976443
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.24 Score=42.95 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCC-CCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~~SA 284 (384)
.+-+++++||...-++......+...+..+.. +.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56689999999998887666666666666533 366666544
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.49 Score=45.42 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+|||...|..+. +|+ -.++.||.|.||+..+. .....+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~-~~A~~L 48 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY-ALSRWL 48 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH-HHHHHH
Confidence 5788888887754 343 57899999999998653 333444
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.7 Score=48.65 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=23.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
....+++||||+|.|... -...+...++.-+..+.+|+.+
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 457789999999987643 2223333344434444444433
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.44 Score=45.60 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=29.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
++|+.||+|+|||..+-+-+-. ......+-+=+..|..-.+++...|++
T Consensus 164 SmIlWGppG~GKTtlArlia~t---------sk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAST---------SKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhh---------cCCCceEEEEEeccccchHHHHHHHHH
Confidence 7999999999999854222111 112234556666666666665555544
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.3 Score=47.28 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.|+++.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999864
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.2 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=16.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
-.|+.||.|+|||.++.. +.+.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~-lAk~L 62 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA-FARCL 62 (563)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhh
Confidence 479999999999996533 33443
|
|
| >PRK06321 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.7 Score=43.89 Aligned_cols=146 Identities=15% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEE
Q 016712 129 VLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC 204 (384)
Q Consensus 129 ~i~~i~~g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~ 204 (384)
.++.+..| .=+++.|.+|.|||... +-+...+.. ..+..++|++ ...-..|+..++-....++...-
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafa-l~ia~~~a~-------~~g~~v~~fS-LEMs~~ql~~Rlla~~s~v~~~~ 285 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALA-LNIAENFCF-------QNRLPVGIFS-LEMTVDQLIHRIICSRSEVESKK 285 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHH-HHHHHHHHH-------hcCCeEEEEe-ccCCHHHHHHHHHHhhcCCCHHH
Confidence 34555444 34677899999999854 444444321 1234465554 33334455555443322333221
Q ss_pred E-ECCCChHHHH------HHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC-------hHHH
Q 016712 205 V-YGGTPISHQM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-------FAED 265 (384)
Q Consensus 205 ~-~g~~~~~~~~------~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-------~~~~ 265 (384)
+ .|..+..+.. ..+. ...+.|- |.+.+...+..-. .-..+++||||=.+.|...+ ...+
T Consensus 286 i~~~~l~~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~~~~r~~e 363 (472)
T PRK06321 286 ISVGDLSGRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLSGSGNLRNSESRQTE 363 (472)
T ss_pred hhcCCCCHHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcCCCCccCCcchHHHH
Confidence 2 2322222211 1222 2356554 3334433333211 12458999999999875321 2344
Q ss_pred HHHHHHHCC-----CCCcEEEEEcc
Q 016712 266 VEVILERLP-----QNRQSMMFSAT 285 (384)
Q Consensus 266 ~~~il~~l~-----~~~q~l~~SAT 285 (384)
+..|.+.|+ -++.++++|.-
T Consensus 364 i~~Isr~LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 364 ISEISRMLKNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeec
Confidence 555555543 27888888775
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.27 Score=46.32 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999854
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.31 Score=46.90 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=41.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 111 VAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+..|.+.|+ +++.+.+.+..+. .+++++++|+||+|||... -.++..+ ....+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i---------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV---------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC---------CCCCcEEEECCccee
Confidence 455666675 5677777776654 5679999999999999832 3333332 123457777777676
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.26 Score=49.17 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHH
Q 016712 123 FPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
++.|...+..+++.. =+++.||||||||.. +..++..+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 677877777776654 378899999999985 46666665
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.79 Score=42.60 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 016712 137 RDMIGRARTGTGKTLA 152 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~ 152 (384)
+++++.||+|+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 6899999999999984
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.50 E-value=4.1 Score=38.96 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+.+-+.|+.|.|||. ++-++...... ..-.-++...-+.++.+++..+- |..
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~----------~~k~R~HFh~FM~~vH~~l~~l~---------g~~------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG----------ERKRRLHFHRFMARVHQRLHTLQ---------GQT------- 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc----------cccccccHHHHHHHHHHHHHHHc---------CCC-------
Confidence 578999999999997 44444333211 11223677777887777777754 111
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~ 289 (384)
|.+ ..+.+-+ .++.+++++||++ +.|-+=.-.+..+++.| ...+.++..|-|.|+.
T Consensus 118 ------dpl----~~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 118 ------DPL----PPIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred ------Ccc----HHHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHH
Confidence 111 0011111 3567889999999 55543233344444443 4588899999998876
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.1 Score=46.99 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=59.3
Q ss_pred CCCEEEEEecCH--------HHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTR--------ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~--------~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.+.+++|++|+. .-+.++++.+.+.+++.++..++|+.+..+....+ .+ ..+|+|+| +.+ ..
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT-----~vi-e~ 520 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVAT-----TVI-EV 520 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC-----cee-ec
Confidence 367899999976 34556777777777788899999998765544333 33 48999999 433 35
Q ss_pred CCCCCCccEEEEeCccc
Q 016712 240 ALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 240 ~~~~~~l~~vViDEah~ 256 (384)
.+++.++++||+..+++
T Consensus 521 GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 521 GVDVPNATVMVIEDAER 537 (630)
T ss_pred CcccCCCcEEEEeCCCc
Confidence 77899999999998886
|
|
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.17 Score=52.42 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=44.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~ 205 (384)
.++++.||||||||..+++|-+... +.-++|+=|--|+........++.+ .+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~Ta~~R~~~G--~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYELTSGWREKQG--QKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHHHHHHHHHCC--CeEEEE
Confidence 5799999999999999999988653 3449999999999988887777654 344443
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.37 Score=45.93 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=29.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
|+-+.+.||+|+|||..++-.+.... . .+..++||..-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~-~--------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ-K--------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCCEEEECccccHHH
Confidence 45688999999999986644444433 2 3667888887655543
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.79 Score=49.77 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.+.++.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999865
|
|
| >PHA00012 I assembly protein | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.6 Score=41.37 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCCccEEEEeCcccccCC-ChH----HHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHh
Q 016712 243 LSEVQFVVLDEADQMLSV-GFA----EDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~-~~~----~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
..+-.++||||||..+.. +++ ..+.+.+...+ ....++++|-.+. .+...++..
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR~l 138 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAREA 138 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHHHh
Confidence 356789999999998753 122 33444444433 3677888877643 444444433
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.81 Score=46.07 Aligned_cols=73 Identities=14% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh---c-CCCEEEECchhHHHHHHccCCCCCCc
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
..+.++||.|-|+.-|.++.+.++... +++.+++|+.+..+....+. + .+.|+|+| +.. .+.++++++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~--~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVA-aRGLDi~dV 410 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG--WPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVA-ARGLDVPDV 410 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC--cceeeecccccHHHHHHHHHhcccCCcceEEEc-----ccc-cccCCCccc
Confidence 456789999999999999999998864 68899999988777665554 2 48999999 433 356778888
Q ss_pred cEEEE
Q 016712 247 QFVVL 251 (384)
Q Consensus 247 ~~vVi 251 (384)
++||-
T Consensus 411 ~lVIn 415 (519)
T KOG0331|consen 411 DLVIN 415 (519)
T ss_pred cEEEe
Confidence 88874
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.67 Score=49.81 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999854
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.83 Score=49.65 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.+.++.||+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999865
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.47 Score=47.51 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=68.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
.=+++.|.||.|||... +-+...+.. ..|..++|+.. ..-..|+..++-....++...-+..+.-...+..
T Consensus 202 ~liviaarpg~GKT~~a-l~ia~~~a~-------~~g~~vl~fSl-Ems~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 202 DMILIAARPSMGKTTFA-LNIAEYAAL-------REGKSVAIFSL-EMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred cEEEEEecCCCChHHHH-HHHHHHHHH-------HcCCcEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHH
Confidence 34677899999999854 444333211 12455777654 3334455555444332333222222211111111
Q ss_pred HHh------cCCCEEEE-C----chhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC-----CC
Q 016712 217 ALD------YGVDAVVG-T----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP-----QN 276 (384)
Q Consensus 217 ~~~------~~~~IlV~-T----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~-----~~ 276 (384)
.+. ....+.|- + +..+...+..-.. -.++++||||=.|.|...+ ....+..+.+.++ -+
T Consensus 273 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~ 351 (444)
T PRK05595 273 NIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEME 351 (444)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 111 12344443 2 2333333332211 1358999999999886332 2234555544442 27
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
+.++++|..
T Consensus 352 i~vi~lsQL 360 (444)
T PRK05595 352 CPVIALSQL 360 (444)
T ss_pred CeEEEeecc
Confidence 888888765
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.1 Score=40.17 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=35.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||...+--+...+ ..+..++|+.- .+-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~---------~~g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGL---------KNGEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---------hCCCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 45789999999999985443444433 13556777765 445677777777765
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.37 Score=49.30 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=25.1
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
+++-+++|+||+-.-+|......+.+.+..+.+++-+|+.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5566788888888777765555665555555444444443
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.93 Score=44.62 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHH-cCCC--CCcHHHH-----HHHHHHhCCCcEEEEccCCCchhHHHH
Q 016712 108 QDIVAALAR-RGIS--KLFPIQK-----AVLEPAMQGRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 108 ~~l~~~l~~-~g~~--~~~~~Q~-----~~i~~i~~g~d~li~a~TGsGKT~~~~ 154 (384)
++|++.|-. .||. .++.-|+ .+++-+.++.|++..||+|+|||..|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 467777766 5775 2232221 112556677899999999999998764
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.71 Score=40.51 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=24.7
Q ss_pred CccEEEEeCcccccCCC-h-HHHHH---HHHHHCCC-CCcEEEEEccCChhHHHHHHH
Q 016712 245 EVQFVVLDEADQMLSVG-F-AEDVE---VILERLPQ-NRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~-~-~~~~~---~il~~l~~-~~q~l~~SAT~~~~~~~~~~~ 296 (384)
.=.++||||||.+.... . ..... ..+...+. ...++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 45689999999887543 2 12222 33333333 56777777764 334444443
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.53 Score=43.62 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=29.1
Q ss_pred HHHcCCCCCcHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
|.+.|+ .+.|.+.+..++. +..++++|+||||||.. +..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 455564 5566666665543 34689999999999984 34455554
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.1 Score=43.90 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=68.7
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
-.|..+++.|+||+||++.+.. ++.+.... ..+|.+-|=|- ++.+... .. ++| +..-+.++|....+.
T Consensus 99 p~~~~vLi~GetGtGKel~A~~--iH~~s~r~-----~~~PFI~~NCa--~~~en~~-~~-eLF-G~~kGaftGa~~~k~ 166 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARL--IHALSARR-----AEAPFIAFNCA--AYSENLQ-EA-ELF-GHEKGAFTGAQGGKA 166 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHH--HHHhhhcc-----cCCCEEEEEHH--HhCcCHH-HH-HHh-ccccceeecccCCcC
Confidence 3678999999999999996532 22222110 23444333221 1111111 11 134 344455555221111
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH-----C----CCCCcEEEEEc
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----L----PQNRQSMMFSA 284 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~-----l----~~~~q~l~~SA 284 (384)
+.+...+=+.+.+||+|++.-.+ ...+-.+++. + +....+-+.+|
T Consensus 167 -------------------------Glfe~A~GGtLfLDEI~~LP~~~-Q~kLl~~le~g~~~rvG~~~~~~~dVRli~A 220 (403)
T COG1221 167 -------------------------GLFEQANGGTLFLDEIHRLPPEG-QEKLLRVLEEGEYRRVGGSQPRPVDVRLICA 220 (403)
T ss_pred -------------------------chheecCCCEEehhhhhhCCHhH-HHHHHHHHHcCceEecCCCCCcCCCceeeec
Confidence 11223345679999999987653 2223333333 1 12455666778
Q ss_pred cCChhHHHHHH--Hhc--CCCeEEEecC
Q 016712 285 TMPPWIRSLTN--KYL--KNPLTVDLVG 308 (384)
Q Consensus 285 T~~~~~~~~~~--~~l--~~~~~i~~~~ 308 (384)
|--+--..+.. .+. ..+..|.+++
T Consensus 221 T~~~l~~~~~~g~dl~~rl~~~~I~LPp 248 (403)
T COG1221 221 TTEDLEEAVLAGADLTRRLNILTITLPP 248 (403)
T ss_pred cccCHHHHHHhhcchhhhhcCceecCCC
Confidence 86554444444 333 3567777654
|
|
| >PRK07773 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.95 Score=49.38 Aligned_cols=137 Identities=14% Similarity=0.061 Sum_probs=67.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQMR 216 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 216 (384)
=+++.|.+|.|||..+ +-+...+.. ..+..++|++ ...-..|+..++.....++...-+ .|.... .+..
T Consensus 219 livIagrPg~GKT~fa-l~ia~~~a~-------~~~~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~i~~g~l~~-~~~~ 288 (886)
T PRK07773 219 LIIVAARPSMGKTTFG-LDFARNCAI-------RHRLAVAIFS-LEMSKEQLVMRLLSAEAKIKLSDMRSGRMSD-DDWT 288 (886)
T ss_pred EEEEEeCCCCCcHHHH-HHHHHHHHH-------hcCCeEEEEe-cCCCHHHHHHHHHHHhcCCCHHHHhcCCCCH-HHHH
Confidence 4788999999999854 444333321 1234455554 444455666665554333332222 222221 1111
Q ss_pred HH------hcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----CC
Q 016712 217 AL------DYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-----QN 276 (384)
Q Consensus 217 ~~------~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~-----~~ 276 (384)
.+ .....+.|. |++.+...+..-.- -.++++||||=.+.|... .....+..|.+.|+ -+
T Consensus 289 ~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ 367 (886)
T PRK07773 289 RLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELE 367 (886)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 11 112445552 34444333322111 135899999999977532 13334555544442 25
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
+.++++|-.
T Consensus 368 vpvi~lsQL 376 (886)
T PRK07773 368 VPVVALSQL 376 (886)
T ss_pred CcEEEeccc
Confidence 666666544
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.6 Score=41.53 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-------HhCC-----CcEEEEccCCCchhHHH
Q 016712 103 KLDISQDIVAALARRGISKLFPIQKAVLEP-------AMQG-----RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 103 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-------i~~g-----~d~li~a~TGsGKT~~~ 153 (384)
.+|.+++-++.+...|.-...+.-.+.+.. +... ..+++.||.|||||..+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 456777777777776655444444444332 1111 26899999999999743
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=91.95 E-value=2.9 Score=42.55 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhCCCCceEEEECCCChH-----HHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 186 AKQVEKEFHESAPSLDTICVYGGTPIS-----HQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
.+++.+.+++.+++.++..++++.... .....+.+ ..+|+|||. ++ ....++.++.+|+|=.+|..+.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~-----~i-~kG~d~~~v~lV~vl~aD~~l~ 344 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQ-----MI-AKGHHFPNVTLVGVLDADSGLH 344 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCc-----cc-ccCCCCCcccEEEEEcCccccc
Confidence 467788899999999988888876432 23444555 489999994 33 4567899999999988997654
Q ss_pred C-ChHH------HHHHHHHHC---CCCCcEEEEEccCChh
Q 016712 260 V-GFAE------DVEVILERL---PQNRQSMMFSATMPPW 289 (384)
Q Consensus 260 ~-~~~~------~~~~il~~l---~~~~q~l~~SAT~~~~ 289 (384)
. .|.. .+..+..+. ....++++.|.++...
T Consensus 345 ~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~ 384 (505)
T TIGR00595 345 SPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHP 384 (505)
T ss_pred CcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCH
Confidence 2 2321 122222222 2345788888877554
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.6 Score=45.45 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=19.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.+..++++||||||||.. +-.++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 345789999999999984 455555553
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.5 Score=46.48 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=59.3
Q ss_pred CCCEEEEEecCHH--------HHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTRE--------LAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~~--------La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.+.+++|++|+.+ -+.++++.+.+.++++++..++|+.+..+....+ .+ ..+|+|+| +.+ ..
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT-----~vi-e~ 543 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVAT-----TVI-EV 543 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC-----cce-ee
Confidence 4678999999643 3566777888777678899999997765544433 33 47999999 443 35
Q ss_pred CCCCCCccEEEEeCccc
Q 016712 240 ALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 240 ~~~~~~l~~vViDEah~ 256 (384)
.+++.++++||+..+++
T Consensus 544 GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 544 GVDVPNATVMVIENAER 560 (681)
T ss_pred CcccCCCcEEEEeCCCC
Confidence 67899999999998886
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.4 Score=42.30 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=17.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
+..++.||.|+|||..+ ..+...+
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHh
Confidence 35799999999999854 3344444
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.4 Score=44.61 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=82.6
Q ss_pred CCCcHHHHHHHHHHhC------C----CcEEEEccCCCchhHHHH-HHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 120 SKLFPIQKAVLEPAMQ------G----RDMIGRARTGTGKTLAFG-IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~------g----~d~li~a~TGsGKT~~~~-lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
..+-|+|.-.+-.+.. | +-.+|..|-+-|||.... +.....+... ..+....|++|+.+-+.+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHHH
Confidence 3578999999988772 1 257889999999997543 3333333221 346679999999999999
Q ss_pred HHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--cCCCCCCccEEEEeCcccccCCChHHHH
Q 016712 189 VEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~l~~vViDEah~~~~~~~~~~~ 266 (384)
.+..++......+ + .......-.....|...--...+..+.. +..+-.+..+.|+||.|...+.+ ..+
T Consensus 134 ~F~~ar~mv~~~~------~--l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 134 SFNPARDMVKRDD------D--LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred hhHHHHHHHHhCc------c--hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 8888777543222 0 0000000000011222221112222222 22334467799999999855531 333
Q ss_pred HHHHHHC--CCCCcEEEEEc
Q 016712 267 EVILERL--PQNRQSMMFSA 284 (384)
Q Consensus 267 ~~il~~l--~~~~q~l~~SA 284 (384)
..+..-+ .++.+++..|-
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 4443333 34666666654
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.6 Score=43.98 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=34.5
Q ss_pred ccEEEEeCcccccCCC-------hHHHHHHHHHHC---CCCCcEEEEEccC-ChhHHHHHHHhcCCCeEEEe
Q 016712 246 VQFVVLDEADQMLSVG-------FAEDVEVILERL---PQNRQSMMFSATM-PPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 246 l~~vViDEah~~~~~~-------~~~~~~~il~~l---~~~~q~l~~SAT~-~~~~~~~~~~~l~~~~~i~~ 306 (384)
-..|.|||.|.+.... ....+..++..+ .++--+|++.||- |..+..-+.+--+-...|.+
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTV 468 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEec
Confidence 3468899999887542 122344444443 4577899999995 33333333333333444444
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.8 Score=47.04 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHh----CC--CcEEEEccCCCchhHHH
Q 016712 126 QKAVLEPAM----QG--RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 126 Q~~~i~~i~----~g--~d~li~a~TGsGKT~~~ 153 (384)
|..-|..+. .+ .+.++.||+|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555443 32 48999999999999865
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.25 Score=39.64 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 341 QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 341 ~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+..+.+...|...+..+..+||++++.+|..++++|.+++..|+
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 82 (131)
T cd00079 39 KMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVL 82 (131)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 44555666666678899999999999999999999999997653
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.45 Score=45.20 Aligned_cols=62 Identities=27% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHHHHcCCCCCcHHHHHHH-HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 112 AALARRGISKLFPIQKAVL-EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i-~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
..|.+.| .+++.|..-+ -.+..+++++++|+||||||. ++.+++..+ ....+.+.+--|.++
T Consensus 120 ~~l~~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I---------p~~~rivtIEdt~E~ 182 (312)
T COG0630 120 EDLIEYG--TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI---------PPEERIVTIEDTPEL 182 (312)
T ss_pred HHHhhcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC---------CchhcEEEEeccccc
Confidence 3344444 4677775554 456678999999999999998 456666555 234567777777766
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.57 Score=48.44 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=27.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~ 281 (384)
+++-.++|+||+-.-+|..-...+.+.+..+.+++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 556688999999988887666666666665555544444
|
|
| >TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.73 Score=48.18 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=38.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH--HHHHHHHHHHHhCC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE--LAKQVEKEFHESAP 198 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~--La~q~~~~~~~~~~ 198 (384)
.++++.|+||+|||..+..-+.+.+ . .+..++++=|--. |...+...++..+.
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i-~--------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDI-R--------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 5899999999999987644444444 2 2567888888754 77777777777653
|
Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.69 Score=46.84 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=42.6
Q ss_pred HHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 128 AVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 128 ~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..++.++.| .-+++.||+|+|||...+--+...+ ..|.+++|++ ..|-..|+.+.++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---------~~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---------ANKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345666654 5789999999999996544444333 2356788877 7777888888888775
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >COG3972 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.88 Score=45.23 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
.+++.+++ .+-.+...|.++.-..-.|+. .|.|=.|||||..-.+-+.+.- ...+.-+++|-+-|+.|+++
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh-------~knPd~~I~~Tfftk~L~s~ 221 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELH-------SKNPDSRIAFTFFTKILAST 221 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHh-------cCCCCceEEEEeehHHHHHH
Confidence 45666654 344567788877655555665 7889999999996433332211 23456789999999999999
Q ss_pred HHHHHHHhC
Q 016712 189 VEKEFHESA 197 (384)
Q Consensus 189 ~~~~~~~~~ 197 (384)
+.....+++
T Consensus 222 ~r~lv~~F~ 230 (660)
T COG3972 222 MRTLVPEFF 230 (660)
T ss_pred HHHHHHHHH
Confidence 887776654
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.17 Score=46.96 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 125 IQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 125 ~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
...+.+.. +..+.+++++|+||||||.. +..++..+.. ...+++++-.+.|+
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred HHHHHHhhccccceEEEEECCCccccchH-HHHHhhhccc--------cccceEEeccccce
Confidence 33334433 34578999999999999984 3555555422 13567888777766
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.4 Score=44.69 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHHHH
Q 016712 139 MIGRARTGTGKTLAFGI 155 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~l 155 (384)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986543
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.65 Score=43.00 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|-|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 37999999999999854
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=2.3 Score=41.58 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=20.0
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
+-.|+..+|.||.|+|||... --+...+
T Consensus 166 IGkGQR~lIvgppGvGKTTLa-K~Ian~I 193 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL-QNIANSI 193 (416)
T ss_pred cccCceEEEeCCCCCChhHHH-HHHHHHH
Confidence 346789999999999999743 2244443
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.49 E-value=2.1 Score=40.71 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=35.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 309 (384)
....+++|||++|.|... -...+-++++.-+ +..+|+.|.. + ..+..........+.+.+-
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~-~---~~Ll~TI~SRcq~i~f~~l 182 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS-P---ESLLPTIVSRCQIIPFYRL 182 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC-h---HhCcHHHHhhceEEecCCC
Confidence 357899999999998654 3444555555544 6656555543 2 3344443334455655443
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.40 E-value=2.4 Score=44.24 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+=+++|||.|-|||..+
T Consensus 327 KilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLA 343 (877)
T ss_pred ceEEeecCCCCChhHHH
Confidence 35899999999999854
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.7 Score=41.65 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.9
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....+++||||+|.|... -...+.+.++.-++++.+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 456789999999998654 33344444554445565665443
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.3 Score=45.07 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=36.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
.|+.+++.|++|+|||...+--+...+ . .|-.++|++ +.+...++.+.+..++-+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~-~--------~ge~vlyvs-~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA-R--------EGEPVLYVS-TEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH-h--------cCCcEEEEE-ecCCHHHHHHHHHHcCCC
Confidence 457899999999999985433333332 2 244566665 566777788888775543
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.30 E-value=9.6 Score=36.28 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=74.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
-++++|-.|+|||....=- .+.+. +.|.++++.+- .|+=|.++.+.+.+.. +++++.. +|+.+..--
T Consensus 141 Vil~vGVNG~GKTTTIaKL-A~~l~--------~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKL-AKYLK--------QQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGKEGADPAAVA 210 (340)
T ss_pred EEEEEecCCCchHhHHHHH-HHHHH--------HCCCeEEEEecchHHHHHHHHHHHHHHHh-CCeEEccCCCCCcHHHH
Confidence 3788999999999864222 22222 34666776664 3566666666655543 2333221 232222111
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCC------cEEEEEccCC
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNR------QSMMFSATMP 287 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~------q~l~~SAT~~ 287 (384)
.+-+... .-+++++|++|=|-||-.. +.-.++++|.+-+.+.. -++.+=||.-
T Consensus 211 ------------------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 211 ------------------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ------------------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 1222211 1346777888888777644 35667777777665533 3455589988
Q ss_pred hhHHHHHHHhc
Q 016712 288 PWIRSLTNKYL 298 (384)
Q Consensus 288 ~~~~~~~~~~l 298 (384)
.+-.+.++.|-
T Consensus 271 qnal~QAk~F~ 281 (340)
T COG0552 271 QNALSQAKIFN 281 (340)
T ss_pred hhHHHHHHHHH
Confidence 88777777664
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.13 Score=48.11 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.|+++.||||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 48999999999999855
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.1 Score=44.37 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=58.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++|+..++++++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+| +.+. ..+++.+++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g--~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~V~ 327 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHG--YRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDGVK 327 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccCCC
Confidence 46689999999999999999998764 6888899987765544433 33 48999999 5554 566889999
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||.-+..
T Consensus 328 ~VInyd~P 335 (572)
T PRK04537 328 YVYNYDLP 335 (572)
T ss_pred EEEEcCCC
Confidence 98875543
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.54 Score=48.53 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=20.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+++++++|+||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999984 45555555
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.13 Score=44.27 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=29.6
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCC--CCCccEEEEeCcccccCC
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALN--LSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~--~~~l~~vViDEah~~~~~ 260 (384)
.+.....+||||++..-|++-.....+. ..+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3444556899999988776654333221 123468999999998654
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.57 Score=44.44 Aligned_cols=45 Identities=24% Similarity=0.154 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHh
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 163 (384)
+.--|+-|..=+..+.+..=++..||-|+|||+.+...+..++..
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh
Confidence 444689999988888876668889999999999877777776643
|
|
| >TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family | Back alignment and domain information |
|---|
Probab=91.05 E-value=1 Score=46.86 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH--HHHHHHHHHHHHhCC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR--ELAKQVEKEFHESAP 198 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~--~La~q~~~~~~~~~~ 198 (384)
..+.+|.|+||+|||..+.+-+.+.+. .+..++++=|-. ++...++..++..+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~---------~g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIR---------RGDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 358999999999999987766655552 356788888866 567777777777654
|
Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.7 Score=47.09 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|.|||..+
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 48999999999999965
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.6 Score=40.90 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||.|+|||..+
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999854
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.76 Score=49.09 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=28.8
Q ss_pred CCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 98 GLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...|++++-.+.+.+.|.+. .+..+.-++.. -+...+.+++.||+|+|||+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~---g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM---GIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEECCCCCCHHHHH
Confidence 34566666666666666542 11111111100 0112356999999999999854
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.1 Score=46.76 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
..+|+.||.|+|||..+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred ceEEEECCCCCChHHHHH
Confidence 457999999999999653
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.90 E-value=5.5 Score=38.59 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHHhCCCc------EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec-----CHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQGRD------MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-----TRELAKQVE 190 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d------~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P-----t~~La~q~~ 190 (384)
.+..|...+..++..++ +++.|.+|+|||.. +...+... +-..+++.+ .+.|-+++.
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~-----------n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL-----------NLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc-----------CCcceeeehHHhccHHHHHHHHH
Confidence 57889999888887654 48899999999984 23333332 222455544 334444444
Q ss_pred HHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--CCCCCCccEEEEeCcccccCCC--hHHHH
Q 016712 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--ALNLSEVQFVVLDEADQMLSVG--FAEDV 266 (384)
Q Consensus 191 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~l~~vViDEah~~~~~~--~~~~~ 266 (384)
..... .+ ..|.........+ ..+...+.++ ....+..-++|+|-+|.+-|.+ ....+
T Consensus 78 ~~~~~-~d-------~dg~~~~~~~en~-----------~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l 138 (438)
T KOG2543|consen 78 NKSQL-AD-------KDGDKVEGDAENF-----------SDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCL 138 (438)
T ss_pred HHhcc-CC-------CchhhhhhHHHHH-----------HHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHH
Confidence 33320 00 0000000000111 1122333331 1122345689999999988765 33445
Q ss_pred HHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 267 ~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
-.+-..++.+.-.|.+|+++++... ..+....+++.+.++.
T Consensus 139 ~~L~el~~~~~i~iils~~~~e~~y-~~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 139 FRLYELLNEPTIVIILSAPSCEKQY-LINTGTLEIVVLHFPQ 179 (438)
T ss_pred HHHHHHhCCCceEEEEeccccHHHh-hcccCCCCceEEecCC
Confidence 5555556666778888999876522 2223445666666643
|
|
| >COG4185 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.68 Score=39.16 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=25.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
.++.||.|+|||..|........ + .++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~------------~-~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL------------P-GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc------------C-CeEEECHHHHhhhc
Confidence 47889999999998754433221 1 56777777776664
|
|
| >PRK07413 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.80 E-value=3.2 Score=40.35 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCCccEEEEeCcccccCCChH--HHHHHHHHHCCCCCcEEEEEcc-CChhHHHHHH
Q 016712 243 LSEVQFVVLDEADQMLSVGFA--EDVEVILERLPQNRQSMMFSAT-MPPWIRSLTN 295 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~--~~~~~il~~l~~~~q~l~~SAT-~~~~~~~~~~ 295 (384)
-...++||+||+-..++.++. .++..+++..|.+.-+|+.--. .|+++.+++.
T Consensus 303 ~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~AD 358 (382)
T PRK07413 303 SGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLAS 358 (382)
T ss_pred CCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCc
Confidence 356889999999988888754 4667777777777666665554 6777666654
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.7 Score=46.36 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
|.++|+ .+.|.+.+..+. .+.-++++||||||||... ..++..+
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 445554 566666666554 3456899999999999853 4555555
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.4 Score=44.61 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=29.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.++++.|+||+|||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~--------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR--------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH--------cCCCEEEEcCCchHHH
Confidence 578999999999998765 44444433 3566777777655544
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.63 Score=47.06 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=30.7
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCC-C-cEEEEccCCCchhHHHHHHHHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQG-R-DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g-~-d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.|.+.|+ .+.|.+.+..+... + -++++||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3556664 67777777766543 3 3789999999999853 4445554
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.3 Score=48.15 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.++++||||+|||..+
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999965
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=90.53 E-value=5 Score=42.26 Aligned_cols=78 Identities=24% Similarity=0.389 Sum_probs=58.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH---HHhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|.++|+..+..+.+.+.+.+ +++..++|+....+... .+.. ..+|+||| +.+. .++++.+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~g--i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v~ 512 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELG--IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEVS 512 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhc--cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCCc
Confidence 47789999999999999999998874 67777888765544332 2333 47899999 4444 567789999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||+-+++..
T Consensus 513 lVvi~Dadif 522 (655)
T TIGR00631 513 LVAILDADKE 522 (655)
T ss_pred EEEEeCcccc
Confidence 9998888763
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PHA02542 41 41 helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.7 Score=43.80 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=27.2
Q ss_pred CccEEEEeCcccccCC-------ChHHHHHHHHHHCCC-----CCcEEEEEcc
Q 016712 245 EVQFVVLDEADQMLSV-------GFAEDVEVILERLPQ-----NRQSMMFSAT 285 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-------~~~~~~~~il~~l~~-----~~q~l~~SAT 285 (384)
.+++||||=.+.|... +....+..|.+.|.. ++.++++|-.
T Consensus 301 ~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQL 353 (473)
T PHA02542 301 KPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQT 353 (473)
T ss_pred CCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEee
Confidence 3889999999977521 234445555554432 7888888776
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.4 Score=46.08 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999854
|
|
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.35 Score=50.69 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=39.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++++||||||||..+++|-+-.. ...++|+=|--|+........++.+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-----------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-----------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-----------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 4899999999999999999986542 2358999999999887766665543
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.3 Score=36.84 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=33.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccC--CCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~--~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.|.-.++.|++|+|||... +.+...+.......+ ...+.+++|+..-.. ..++.+++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~-~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLA-LQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHH-HHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 4556899999999999854 444444432111100 113556888776554 5577777776553
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.18 E-value=2.7 Score=43.85 Aligned_cols=111 Identities=20% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHh--------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM--------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~--------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.+...-.+.++.+. +|+-+.++||+|-|||-+. -. +++.
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-kS--------------------------------IA~A 461 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-KS--------------------------------IARA 461 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-HH--------------------------------HHHH
Confidence 34555555554433 3466888999999999753 22 2222
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
+.+-| .....||.....+++.-.+ --|=+-||++.+.++.-... =-++.|||+|.+....-+.--..+++.
T Consensus 462 LnRkF----fRfSvGG~tDvAeIkGHRR--TYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~g~qGDPasALLEl 532 (906)
T KOG2004|consen 462 LNRKF----FRFSVGGMTDVAEIKGHRR--TYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGSGHQGDPASALLEL 532 (906)
T ss_pred hCCce----EEEeccccccHHhhcccce--eeeccCChHHHHHHHhhCCC---CceEEeehhhhhCCCCCCChHHHHHHh
Confidence 22222 1233455443333322211 23345699999999754331 126899999998843334444455555
Q ss_pred C
Q 016712 273 L 273 (384)
Q Consensus 273 l 273 (384)
|
T Consensus 533 L 533 (906)
T KOG2004|consen 533 L 533 (906)
T ss_pred c
Confidence 5
|
|
| >PHA02535 P terminase ATPase subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=2.9 Score=42.83 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 104 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
-.+++.....|.+.....+.+||...+..-+..+..++.-.=-.|||..|..-++..... .|...++|.|++
T Consensus 121 n~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~--------~G~nqiflSas~ 192 (581)
T PHA02535 121 NDISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL--------TGRNQIFLSASK 192 (581)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh--------cCCceEEECCCH
Confidence 346777888888877778999999988552223555666666789999877666554433 355689999999
Q ss_pred HHHHHHHHHHHHhC
Q 016712 184 ELAKQVEKEFHESA 197 (384)
Q Consensus 184 ~La~q~~~~~~~~~ 197 (384)
+.+.+..+.+..+.
T Consensus 193 ~QA~~f~~yi~~~a 206 (581)
T PHA02535 193 AQAHVFKQYIIAFA 206 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998777766663
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.51 Score=45.74 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+.-++++||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5678999999999999843 4444444
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.52 Score=41.60 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=23.8
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
++++||||||||... ..++..+.. ..+.+++.+--..++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~-------~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINK-------NKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhh-------cCCcEEEEEcCCccc
Confidence 689999999999853 444444422 123455665554443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.8 Score=43.78 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=25.8
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
.+.+.+++||||+|.|... -...+...++..+.+.-+| +.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEE-EEeC
Confidence 3567889999999998654 2334445555544444444 4444
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.55 Score=44.53 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 016712 133 AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~ 152 (384)
+..+++++++|+||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 45678999999999999984
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.57 Score=48.34 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=31.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.|.+.|| .+.|.+.+..+.. ..-++++||||||||... ..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3566675 5677777766554 346789999999999853 5555555
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.91 Score=47.15 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=72.7
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE-EecCHHHHHHHHHHHHHhCCC--------CceE
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQVEKEFHESAPS--------LDTI 203 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv-l~Pt~~La~q~~~~~~~~~~~--------~~~~ 203 (384)
+..|+.+-++||.|+|||.+ ..++.++.+ ..++++++ =+|-+++=..+++.--.+-.. +.-.
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~-------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYD-------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcC-------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence 44688999999999999985 455566543 12222221 234444433333311111100 1111
Q ss_pred EEECCCChHH--------------HHHHHhcCCCEEEECchhHHHHHHcc-----CCCCCCccEEEEeCcccccCCChHH
Q 016712 204 CVYGGTPISH--------------QMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 204 ~~~g~~~~~~--------------~~~~~~~~~~IlV~Tp~~l~~~l~~~-----~~~~~~l~~vViDEah~~~~~~~~~ 264 (384)
+.||-....+ ....+.+|.+-.||.-|..+.=-... ..-+++-..+|+|||--.+|..-..
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH
Confidence 2233322111 12222334555565554332111100 1125677889999999988877677
Q ss_pred HHHHHHHHCCCCCcEEEEEc
Q 016712 265 DVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 265 ~~~~il~~l~~~~q~l~~SA 284 (384)
.+++.+.++..++ +++.=|
T Consensus 642 lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 642 LVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred HHHHHHHHhhcCC-eEEEEe
Confidence 7778887776664 444333
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.6 Score=43.75 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.+.++|||||+|.|.... ...+...++.-+..+.+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999876432 223344444434455455533
|
|
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.1 Score=43.44 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHHHHh---CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 124 PIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 124 ~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
++-..+|+.+. +|...+|.|+.|+|||... .-++..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl-~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL-QQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 45556777655 6789999999999999853 3344444
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.2 Score=46.08 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=61.7
Q ss_pred CCCEEEEEecCHH--------HHHHHHHHHHHhCCCCceEEEECCCChHH---HHHHHhc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTRE--------LAKQVEKEFHESAPSLDTICVYGGTPISH---QMRALDY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~~--------La~q~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.|.|+-||||..+ -|...++.++..++++++..++|.....+ .+..+++ ..+|+|+| ..+ .=
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT-----TVI-EV 545 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT-----TVI-EV 545 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe-----eEE-Ee
Confidence 4889999999775 45677888888889999999999877544 3444455 58999999 222 23
Q ss_pred CCCCCCccEEEEeCccc
Q 016712 240 ALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 240 ~~~~~~l~~vViDEah~ 256 (384)
.++..+-.++||..|++
T Consensus 546 GVdVPnATvMVIe~AER 562 (677)
T COG1200 546 GVDVPNATVMVIENAER 562 (677)
T ss_pred cccCCCCeEEEEechhh
Confidence 56789999999999999
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.9 Score=43.11 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=56.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
..+.++|.+.++.-|.-+.+.|.+.+ +++..++|+....+....+ .. ..+|+||| +.. ...++..++.
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvA-gRGIDIpnVS 587 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAG--YKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVA-GRGIDIPNVS 587 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhcc--ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----ccc-ccCCCCCccc
Confidence 36779999999999999999999987 8899999998876665544 33 48999999 433 3467788888
Q ss_pred EEE
Q 016712 248 FVV 250 (384)
Q Consensus 248 ~vV 250 (384)
+||
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 775
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=5.7 Score=42.73 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=20.3
Q ss_pred CchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 228 Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.|+++...+..... .-.++++||+|.+...
T Consensus 402 ~~G~~~~~l~~~~~---~~~villDEidk~~~~ 431 (784)
T PRK10787 402 MPGKLIQKMAKVGV---KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CCcHHHHHHHhcCC---CCCEEEEEChhhcccc
Confidence 57777776654332 1137999999998765
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.38 Score=44.50 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHhCCCcEEEEccCCCchhHHH
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+..+..|+++++.||+|+|||..+
T Consensus 15 l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 15 LRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344567899999999999999975
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.3 Score=36.82 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
..+-+++++||--.-+|......+..+++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 3466789999999888876777777777776
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.88 Score=49.45 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=37.6
Q ss_pred CCCccCCCCCHHHHHHHHHcCCC-CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 98 GLDISKLDISQDIVAALARRGIS-KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...|++.|....++..|+++-+. -++|-+..-+ .+-.-+-++++||.|+|||+.+
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 45688888888899999987432 2344333322 1233467999999999999854
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=89.25 E-value=1.3 Score=39.60 Aligned_cols=45 Identities=18% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
|.-+.+.|++|+|||...+.-+....... . -.+.+..++|+..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~--~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-E--LGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-c--cCCCcceEEEEecCC
Confidence 45689999999999996654443332110 0 001125678877643
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.6 Score=40.83 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
.+.++||+++|+.-++.+++.+++.+.++.+..++|........+.. ..+|+|+| +.+.+ +++++.. .||+
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaT-----dv~~r-GiDi~~~-~vi~ 341 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--QFDILLGT-----STVDV-GVDFKRD-WLIF 341 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--cCCEEEEe-----cHHhc-ccCCCCc-eEEE
Confidence 46689999999999999999999875456677777776655443332 47999999 55543 4555554 5666
Q ss_pred e
Q 016712 252 D 252 (384)
Q Consensus 252 D 252 (384)
|
T Consensus 342 ~ 342 (357)
T TIGR03158 342 S 342 (357)
T ss_pred C
Confidence 4
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK13880 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.42 Score=50.00 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=36.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
.++++.||||||||..+++|.+... +..++|+=|--|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-----------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-----------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-----------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987532 345899999999976554443
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.8 Score=38.39 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=23.3
Q ss_pred cEEEEeCccccc-CC----ChHHHHHHHHHHCCC-CCcEEEEEccC
Q 016712 247 QFVVLDEADQML-SV----GFAEDVEVILERLPQ-NRQSMMFSATM 286 (384)
Q Consensus 247 ~~vViDEah~~~-~~----~~~~~~~~il~~l~~-~~q~l~~SAT~ 286 (384)
-+|||||+|.+. .. .+...+..++..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999988 21 245556666666332 23344455554
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.6 Score=45.81 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=31.4
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
...+++++.|.||+|||. ++..++..+.. .+.+++|.=|.-+.....+
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~--------~g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRA--------RGDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHH--------TT-EEEEEEETTHHHHHH-
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHH--------cCCEEEEEECCchHHHHhc
Confidence 345799999999999997 55677777654 2556777777766655433
|
It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.74 Score=44.41 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+..++++||||||||... ..++..+.. ..+.+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~-------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK-------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc-------CCCCEEEEEcCChhh
Confidence 4568999999999999853 444444421 123456666555554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.63 Score=48.43 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=41.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~ 205 (384)
.++++.||||+|||..+++|-+-.. +.-++|+=|.-|+.......-++.+ +.++.++
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-----------~gS~VV~DpKgE~~~~Ta~~R~~~G-g~~V~vf 268 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-----------GGPLVCLDPSTEVAPMVCEHRRQAG-NRKVIVL 268 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-----------CCCEEEEEChHHHHHHHHHHHHHcC-CCcEEEE
Confidence 5899999999999999999964321 3458999999999876665444443 2445444
|
This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 384 | ||||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 2e-53 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 5e-53 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 1e-36 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-36 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 2e-34 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 4e-33 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 4e-33 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 5e-33 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 6e-33 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 7e-33 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 3e-32 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 6e-32 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 8e-32 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 2e-31 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-31 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 4e-30 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 1e-29 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 2e-29 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 6e-29 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 1e-28 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 5e-28 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 1e-27 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 1e-27 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 3e-27 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 7e-27 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 1e-26 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 2e-26 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 3e-26 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 7e-25 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 8e-25 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 2e-23 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 3e-23 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 5e-23 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 1e-22 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-22 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 3e-22 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 1e-21 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 2e-21 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 2e-17 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 3e-17 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 3e-17 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 3e-17 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 2e-14 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 2e-14 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 2e-14 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 2e-14 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 1e-13 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-13 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 2e-13 |
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 6e-93
Identities = 98/203 (48%), Positives = 133/203 (65%), Gaps = 3/203 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI +++
Sbjct: 4 KDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERL 63
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
RGR P LVL PTRELA QV E AP L + VYGGT Q AL G
Sbjct: 64 ---APSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRG 120
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ+++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 282 FSATMPPWIRSLTNKYLKNPLTV 304
FSAT+P W + L +Y+KNP+ +
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLI 203
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 3e-88
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 12/209 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ I+ A+ K IQ+ ++ A++G M+G+++TGTGKT A+ +PI++KI
Sbjct: 7 TRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH------ESAPSLDTICVYGGTPISHQM 215
++ APTRELA Q+ E + C+ GGT +
Sbjct: 67 ------KPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 120
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L+ V+GTPGR+ D I+ AL++ +V+DEAD ML +GF DV+ I R+P+
Sbjct: 121 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK 180
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+ Q ++FSAT+P ++ KY++NP V
Sbjct: 181 DLQMLVFSATIPEKLKPFLKKYMENPTFV 209
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 3e-88
Identities = 70/212 (33%), Positives = 120/212 (56%), Gaps = 9/212 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+G + + ++++ + G K PIQ+ + A+ GRD++ RA+ GTGK+ A+ IP
Sbjct: 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISH 213
+L+++ + N +V+ PTRELA QV + + + + GGT +
Sbjct: 61 LLERL------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
+ LD V V+ TPGR++DLIK+ + VQ +VLDEAD++LS F + +E I+ L
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305
P+NRQ +++SAT P ++ N +L+ P ++
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 8e-85
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 11/213 (5%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAF 153
+ E ++ ++L++S +I+ A+ +G K IQ V+ + +++ +ARTG+GKT +F
Sbjct: 2 EVEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASF 61
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPI 211
IP+++ + ++L PTRELA QV E +L +YGG I
Sbjct: 62 AIPLIELV-------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAI 114
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q++AL + VVGTPGR++D I R LNL V++ +LDEAD+ML++GF +DVE IL
Sbjct: 115 YPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 173
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
++++ ++FSATMP I +L KY+ + +
Sbjct: 174 ACNKDKRILLFSATMPREILNLAKKYMGDYSFI 206
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 260 bits (668), Expect = 4e-84
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 10/234 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L +
Sbjct: 40 DTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL 99
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
+ + R L+LAPTRELA Q++K ++ GGT + +R LD
Sbjct: 100 ---DIQV---RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
YG V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q
Sbjct: 154 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 213
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
++ SAT+P I +TNK++ +P+ + + D+ +GI + +A K +
Sbjct: 214 VLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFD 265
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 257 bits (660), Expect = 6e-83
Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 12/251 (4%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
D DD +G + ++++ + G K PIQ+ + A+ GRD++ RA+
Sbjct: 7 DTRPQTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAK 66
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--T 202
GTGKT AF IP L+K+ + L++ PTRELA Q +
Sbjct: 67 NGTGKTAAFVIPTLEKV------KPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISC 120
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+ GGT + + L+ V +VGTPGRV+DL R +LS+ ++DEAD+MLS F
Sbjct: 121 MVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDF 180
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322
+E IL LP QS++FSAT P ++ K+L P ++L ++ GI+ Y
Sbjct: 181 KTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL---MEELTLKGITQYY 237
Query: 323 IATSMNMQKVE 333
QK+
Sbjct: 238 AFVE-ERQKLH 247
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 5e-82
Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 11/235 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT F I IL +I
Sbjct: 43 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 102
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
+ LVLAPTRELA+Q++K + GGT + +++ L
Sbjct: 103 ---ELDL---KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 156
Query: 220 Y-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + + I ++L N Q
Sbjct: 157 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 216
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
++ SATMP + +T K++++P+ + + ++ +GI + I K++
Sbjct: 217 VVLLSATMPSDVLEVTKKFMRDPIRILVK--KEELTLEGIRQFYINVEREEWKLD 269
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 2e-81
Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 15/201 (7%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+++ I A+ G +Q + +QG++++ RA+TG+GKT A+ IPIL+ +K
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK-- 58
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
LV+ PTREL +QV + +D VYGG P Q+ + D
Sbjct: 59 ----------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NAD 107
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR++DL + ++LS + V++DEAD M +GF +D+++IL + + + +FS
Sbjct: 108 IVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFS 167
Query: 284 ATMPPWIRSLTNKYLKNPLTV 304
AT+P IR + ++ N +
Sbjct: 168 ATIPEEIRKVVKDFITNYEEI 188
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 2e-81
Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 11/234 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+++ ++++ + G + IQ+ + P ++G D++ +A++GTGKT F I L +I
Sbjct: 24 DDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 83
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
+ + P L+LAPTRELA Q++K A +D GGT L
Sbjct: 84 ---DTSV---KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 137
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
VVGTPGRV D I+R +++ +LDEAD+MLS GF E + I LP Q
Sbjct: 138 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 196
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
++ SATMP + +T K+++NP+ + + D+ +GI + + K E
Sbjct: 197 VLLSATMPNDVLEVTTKFMRNPVRILVK--KDELTLEGIKQFYVNVEEEEYKYE 248
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 3e-81
Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT F I IL ++
Sbjct: 33 DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 92
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+ + LVLAPTRELA+Q++K GGT + ++M+ L
Sbjct: 93 ---EIEF---KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146
Query: 220 Y-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + + I ++L + Q
Sbjct: 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 206
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
++ SATMP + +T K++++P+ +
Sbjct: 207 VVLLSATMPTDVLEVTKKFMRDPIRI 232
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 7e-81
Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 9/203 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++ ++++ + G + IQ+ + P ++G D++ +A++GTGKT F I L +I
Sbjct: 19 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-- 76
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
+ + P L+LAPTRELA Q++K A +D GGT L
Sbjct: 77 -DTSV---KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-D 131
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VVGTPGRV D I+R +++ +LDEAD+MLS GF E + I LP Q ++
Sbjct: 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 191
Query: 282 FSATMPPWIRSLTNKYLKNPLTV 304
SATMP + +T K+++NP+ +
Sbjct: 192 LSATMPNDVLEVTTKFMRNPVRI 214
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 245 bits (629), Expect = 9e-81
Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 9/226 (3%)
Query: 88 VAYDDSSKDEGLDISK--------LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
+ DD E I K D++ ++ R GI K PIQ +QG D+
Sbjct: 1 MTCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDL 60
Query: 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAP 198
I A+TGTGKTL++ +P + + P LVL PTRELA VE E + S
Sbjct: 61 IVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK 120
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L +IC+YGG + Q+ + GVD ++ TPGR+ DL N++NL + ++V+DEAD+ML
Sbjct: 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML 180
Query: 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+ F + IL + +RQ++M SAT P +R L YLK+P+ V
Sbjct: 181 DMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 1e-80
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 11/235 (4%)
Query: 76 AWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ 135
+ + AQ D E D L +S+ ++ L G + P+Q +
Sbjct: 1 SMRTAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC 60
Query: 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195
G D+I +A++GTGKT F LD ++ + L+LAPTRE+A Q+
Sbjct: 61 GLDLIVQAKSGTGKTCVFSTIALDSLVL------ENLSTQILILAPTREIAVQIHSVITA 114
Query: 196 SA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
L+ GGTP+S L VG+PGR+ LI+ + LN ++ +LD
Sbjct: 115 IGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173
Query: 253 EADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
EAD++L G F E + I LP ++Q + SAT P ++ + KY+++P V L
Sbjct: 174 EADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 2e-80
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 11/206 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +++ A+ G +Q + A+ G D++ +A++G GKT F + L ++
Sbjct: 19 FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-- 76
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
LV+ TRELA Q+ KE+ + P++ +GG I L
Sbjct: 77 ----EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132
Query: 221 GV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQ 278
VVGTPGR++ L + +LNL ++ +LDE D+ML + DV+ I P +Q
Sbjct: 133 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ 192
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
MMFSAT+ IR + K++++P+ +
Sbjct: 193 VMMFSATLSKEIRPVCRKFMQDPMEI 218
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 2e-78
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 16/244 (6%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +++ A+ G +Q + A+ G D++ +A++G GKT F + L ++
Sbjct: 11 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL 70
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
LV+ TRELA Q+ KE+ + P++ +GG I L
Sbjct: 71 ------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 124
Query: 219 DYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQN 276
VVGTPGR++ L + +LNL ++ +LDE D+ML + DV+ I P
Sbjct: 125 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 184
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL-ADGISLYSIATSMNMQKVENA 335
+Q MMFSAT+ IR + K++++P+ + + D + KL G+ Y + + +K
Sbjct: 185 KQVMMFSATLSKEIRPVCRKFMQDPMEIFV--DDETKLTLHGLQQYYVKLK-DNEKNR-K 240
Query: 336 LFSL 339
LF L
Sbjct: 241 LFDL 244
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 245 bits (626), Expect = 5e-76
Identities = 73/275 (26%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILD 159
+ + ++I A+ R L P+Q+ ++P + + D+I RA+TGTGKT AF IPI
Sbjct: 24 EEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE------FHESAPSLDTICVYGGTPISH 213
+I +++APTR+LA Q+E E + + + GGT
Sbjct: 84 HLINTKFDSQYM--VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141
Query: 214 QMRALD-YGVDAVVGTPGRVIDLIKRNALNLSE-VQFVVLDEADQMLSVGFAEDVEVILE 271
M ++ + V+ TPGR+ID++++ + V + VLDEAD++L +GF +D+E I
Sbjct: 142 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201
Query: 272 RLPQ-------NRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYS 322
L + N ++++FSAT+ ++ L N + L +D V ++ + + I
Sbjct: 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261
Query: 323 IATSMNMQKVENALFSLKQNVMQTAWLMLWLKVII 357
+ + + A+ +K+ + + K II
Sbjct: 262 VISEKFANSIFAAVEHIKKQIKERD---SNYKAII 293
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 9e-76
Identities = 78/210 (37%), Positives = 128/210 (60%), Gaps = 4/210 (1%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P + I
Sbjct: 34 ANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH 93
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q+R L+ G
Sbjct: 94 -QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 152
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++ +RQ++M
Sbjct: 153 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 212
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
+SAT P +R L +LK+ + ++ +G +
Sbjct: 213 WSATWPKEVRQLAEDFLKDYIHIN-IGALE 241
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 7e-75
Identities = 79/332 (23%), Positives = 147/332 (44%), Gaps = 24/332 (7%)
Query: 45 PRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKL 104
R+++ + R S SR D + + + + +
Sbjct: 18 QRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEG 77
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKII 162
+ ++I A+ R L P+Q+ ++P + + D+I RA+TGTGKT AF IPI +I
Sbjct: 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLI 137
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF------HESAPSLDTICVYGGTPISHQMR 216
+++APTR+LA Q+E E + + + GGT M
Sbjct: 138 NTKFDSQYM--VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMN 195
Query: 217 ALD-YGVDAVVGTPGRVIDLIKRNALNL-SEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ + V+ TPGR+ID++++ + V + VLDEAD++L +GF +D+E I L
Sbjct: 196 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 255
Query: 275 Q-------NRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIAT 325
+ N ++++FSAT+ ++ L N + L +D V ++ + + I + +
Sbjct: 256 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315
Query: 326 SMNMQKVENALFSLKQNVMQTAWLMLWLKVII 357
+ A+ +K+ + + K II
Sbjct: 316 EKFANSIFAAVEHIKKQIKERD---SNYKAII 344
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 4e-74
Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 9/228 (3%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
+ + ++E L ++ + A + G +K IQ + A+QGRD+
Sbjct: 24 EEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDI 83
Query: 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SA 197
IG A TG+GKT AF +PIL+ +++ + LVL PTRELA Q+ ++F S+
Sbjct: 84 IGLAETGSGKTGAFALPILNALLE------TPQRLFALVLTPTRELAFQISEQFEALGSS 137
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQ 256
+ + + GG Q AL ++ TPGR+ID ++ NL ++++V+DEAD+
Sbjct: 138 IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+L++ F +V+ IL+ +P++R++ +FSATM ++ L LKNP+
Sbjct: 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 3e-73
Identities = 74/210 (35%), Positives = 121/210 (57%), Gaps = 9/210 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + I + + PIQK + ++ RD++ A+TG+GKT AF IPI++ ++
Sbjct: 28 LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87
Query: 164 F---NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRAL 218
+++ + P CL+LAPTRELA Q+ E + + + + VYGG Q+R +
Sbjct: 88 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV 147
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP-- 274
G +V TPGR++D I++N ++L +++VLDEAD+ML +GF + I+E +P
Sbjct: 148 QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG 207
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
NRQ++MFSAT P I+ L +L N + +
Sbjct: 208 INRQTLMFSATFPKEIQKLAADFLYNYIFM 237
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 9e-71
Identities = 82/257 (31%), Positives = 132/257 (51%), Gaps = 14/257 (5%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSS-KDEGLDISK-------LDISQDIV 111
EF+ P + I ++ + Y++ K G D+ + D+ I+
Sbjct: 10 GEFYIPPEPSNDAIEIF-SSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIII 68
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ + G PIQK + GRD++ A+TG+GKT AF +PIL K+++ +
Sbjct: 69 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE-DPHELEL 127
Query: 172 RNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P ++++PTRELA Q+ E + L VYGGT HQ + G V+ TP
Sbjct: 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATP 187
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLPQNRQSMMFSATMP 287
GR++D + R + + +FVVLDEAD+ML +GF+ED+ I+ + Q++MFSAT P
Sbjct: 188 GRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP 247
Query: 288 PWIRSLTNKYLKNPLTV 304
I+ + ++LKN + V
Sbjct: 248 EEIQRMAGEFLKNYVFV 264
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-70
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 19/238 (7%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILD 159
+L ++ +++ + K IQ+ L + R+MI ++++GTGKT AF + +L
Sbjct: 8 DELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLT 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMR 216
++ N + +P + LAP+RELA+Q + E + V + Q+
Sbjct: 68 RV---NPED---ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI- 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQ 275
+VGTPG V+DL++R + L +++ VLDEAD ML G + + LP+
Sbjct: 121 ----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
+ Q ++FSAT +R K + N T++L +++ D I + K +
Sbjct: 177 DTQLVLFSATFADAVRQYAKKIVPNANTLELQ--TNEVNVDAIKQLYMDCKNEADKFD 232
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 3e-69
Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 6/221 (2%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
Y+ + +E S +S+ + L + IQK + A+QG+D++G A+TG+G
Sbjct: 15 NYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSG 74
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVY 206
KTLAF +P+L+ + + + L+++PTRELA Q + + +
Sbjct: 75 KTLAFLVPVLEALYR--LQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLII 132
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLDEADQMLSVGFAED 265
GG + H+ ++ ++ +V TPGR++ + + +++Q +VLDEAD++L +GFA+
Sbjct: 133 GGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADT 191
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ ++E LP+ RQ+++FSAT ++ L LKNP V +
Sbjct: 192 MNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 2e-68
Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 18/213 (8%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK------ 163
I+ + ++ P+QK + + RD++ A+TG+GKT AF +PIL +I
Sbjct: 26 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 85
Query: 164 ------FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
R + P+ LVLAPTRELA Q+ +E + + VYGG I Q+
Sbjct: 86 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 145
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE---- 271
R L+ G +V TPGR++D+++R + L +++VLDEAD+ML +GF + I+E
Sbjct: 146 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 205
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
R +MMFSAT P I+ L +L + +
Sbjct: 206 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 238
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 6e-68
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 18/237 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161
L + ++ + G ++ IQ+ L + +++I ++++GTGKT AF + +L ++
Sbjct: 30 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 89
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ + P CL L+PT ELA Q K + P L G + +
Sbjct: 90 ---EPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI- 142
Query: 219 DYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQN 276
V+GTPG V+D + ++ +++ VLDEAD M++ G + I LP+N
Sbjct: 143 --SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 200
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
Q ++FSAT + K + +P + L +++ D I Y + S +K +
Sbjct: 201 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLK--REEETLDTIKQYYVLCSSRDEKFQ 255
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 2e-66
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 16/210 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161
L + ++ + G ++ IQ+ L + +++I ++++GTGKT AF + +L ++
Sbjct: 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ + P CL L+PT ELA Q K + P L G + +
Sbjct: 157 ---EPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI- 209
Query: 219 DYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQN 276
V+GTPG V+D + ++ +++ VLDEAD M++ G + I LP+N
Sbjct: 210 --SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q ++FSAT + K + +P + L
Sbjct: 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 2e-66
Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 14/208 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ ++ + G PIQ + + GR+++ A TG+GKTLAF IPIL ++
Sbjct: 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL---- 91
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQ-MRALDYGV 222
K + L+++PTRELA Q+ +E + + ++ + +
Sbjct: 92 -KQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKF 150
Query: 223 DAVVGTPGRVIDLIKRN--ALNLSEVQFVVLDEADQML---SVGFAEDVEVILERL-PQN 276
D +V TP R+I L+K++ ++L+ V+++V+DE+D++ GF + + I
Sbjct: 151 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 210
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+ MFSAT + L N ++V
Sbjct: 211 VRRAMFSATFAYDVEQWCKLNLDNVISV 238
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 3e-66
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 18/237 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKI 161
L + ++ + G ++ IQ+ L + +++I ++++GTGKT AF + +L ++
Sbjct: 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
+ + P CL L+PT ELA Q K + P L G + +
Sbjct: 157 ---EPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI- 209
Query: 219 DYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQN 276
V+GTPG V+D + ++ +++ VLDEAD M++ G + I LP+N
Sbjct: 210 --SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
Q ++FSAT + K + +P + L +++ D I Y + S +K +
Sbjct: 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLK--REEETLDTIKQYYVLCSSRDEKFQ 322
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 2e-61
Identities = 71/205 (34%), Positives = 118/205 (57%), Gaps = 10/205 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII--K 163
++++ + A+ G + + IQ + P ++GRD++ A+TG+GKTLAF IP ++ I+ +
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG 221
F ++G G L+L+PTRELA Q E + GG+ S + + L G
Sbjct: 121 FMPRNGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNG 176
Query: 222 VDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
++ +V TPGR++D ++ +Q +V+DEAD++L VGF E+++ I++ LP RQ+M
Sbjct: 177 INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 236
Query: 281 MFSATMPPWIRSLTNKYLKN-PLTV 304
+FSAT + L LK PL V
Sbjct: 237 LFSATQTRKVEDLARISLKKEPLYV 261
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 1e-60
Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 16/206 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+ +D + ++ L Q+ + +QG+ A TG GKT + L K
Sbjct: 4 WNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALD--- 219
++ PT L KQ + + + + Y + +
Sbjct: 64 ---------GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFE 114
Query: 220 -YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+V + V R L+ FV +D+ D +L D +++ +P+
Sbjct: 115 EDDYHILVFSTQFVSK--NREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
FS I L V
Sbjct: 173 RKAFSTIKQGKIYERPKNLKPGILVV 198
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 78.3 bits (192), Expect = 5e-16
Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 12/174 (6%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+ RR + + Q+ + + + TG GKTL + I ++ G+
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMM-----IAEYRLTKYGGK- 54
Query: 174 PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
L+LAPT+ L Q + F P + + G + +A +V TP
Sbjct: 55 --VLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQT 111
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
+ + + ++L +V +V DEA + + + +R +N + +A+
Sbjct: 112 IENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 2e-15
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 11/190 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPI 157
+ + +L + + I + L RGI +P Q L+ + +G++ + T +GKTL I +
Sbjct: 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAM 60
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
+ +I+ K + + P + LA++ +EF + + + G S
Sbjct: 61 VHRILTQGGK--------AVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWL 112
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
Y D ++ T + L++ + + +V+ +V DE + S +EVIL +
Sbjct: 113 GKY--DIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA 170
Query: 278 QSMMFSATMP 287
Q + SAT+
Sbjct: 171 QIIGLSATIG 180
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 5e-12
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 24/198 (12%)
Query: 99 LDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ + +L IS V L GI +LFP Q +E G++++ T GKTL +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMA 60
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
++ + IK G+ L + P R LA + + F + I + G S
Sbjct: 61 MVREAIK------GGK---SLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH 111
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED----VEVILER 272
D D +V T + LI+ A + V +V+DE +L +E +E+++ +
Sbjct: 112 LGDC--DIIVTTSEKADSLIRNRASWIKAVSCLVVDEI-HLLD---SEKRGATLEILVTK 165
Query: 273 LPQNRQSMMF---SATMP 287
+ + +++ SAT P
Sbjct: 166 MRRMNKALRVIGLSATAP 183
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 24/196 (12%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPI 157
+ I L + +++ + +RGI KL P Q ++ + G ++ + TG+GKTL + I
Sbjct: 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGI 67
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMR 216
+ ++K K + + P R L + F + G
Sbjct: 68 ISFLLKNGGK--------AIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWL 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED-----VEVILE 271
D ++ T ++ L + L+EV + VLDE L + VE +
Sbjct: 120 K---NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDEL-HYL----NDPERGPVVESVTI 171
Query: 272 RLPQNRQSMMFSATMP 287
R + R + SAT+
Sbjct: 172 RA-KRRNLLALSATIS 186
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 62.7 bits (151), Expect = 9e-11
Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 13/203 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ L + ++ I K Q + +PA+ G++ + A TG+GKT +
Sbjct: 223 DDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTF---V 279
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
IL + GR + LA + +Q + F + G +
Sbjct: 280 SILI-CEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+ + D +V TP +++ + L +LS ++ DE +
Sbjct: 339 SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398
Query: 273 LPQNRQSMMFSATMPPWIRSLTN 295
N S + P I LT
Sbjct: 399 QKFNSASQL------PQILGLTA 415
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 5e-10
Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 26/179 (14%)
Query: 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170
V ++ S +F + + A TG+GK+ +P + + +
Sbjct: 207 VESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKST--KVPAA-----YAAQGYK 259
Query: 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP-ISHQMRALDYGVDAVVGTP 229
LVL P+ + +G P I +R + G T
Sbjct: 260 V-----LVLNPSVAATLGFGAYMSK---------AHGIDPNIRTGVRTITTGAPVTYSTY 305
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288
G+ + + ++ DE + +L++ ++ AT P
Sbjct: 306 GK---FLADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLATATP 360
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-09
Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 16/175 (9%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLF---PIQKAVLEPAMQGRDMIGRARTGTG 148
+ + G D + D AR P Q V +PA++G+++I TG+G
Sbjct: 1 SMNSNMGSDSGTMGSDSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSG 60
Query: 149 KTL-AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES--APSLDTICV 205
KT A I D + K + G+ +VL L +Q+ ++ + I +
Sbjct: 61 KTRVAVYI-AKDHLDKKKKASEPGK---VIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGL 116
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEA 254
G T + + D ++ T + + + + LS+ +++DE
Sbjct: 117 SGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 2e-09
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185
Q + PA +G++ I A TG GKT + + +K G+ + A +
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHL----KKFPCGQKGKVVFFANQIPV 64
Query: 186 AKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN- 242
+Q F + + G T S ++ + D ++ TP +++ + A+
Sbjct: 65 YEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPS 124
Query: 243 LSEVQFVVLDEA 254
LS ++ DE
Sbjct: 125 LSVFTLMIFDEC 136
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 57.7 bits (138), Expect = 3e-09
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 7/166 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ L + ++ I K Q + +PA+ G++ + A TG+GKT +
Sbjct: 223 DDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTF---V 279
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
IL + GR + LA + +Q + F + G +
Sbjct: 280 SILI-CEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQML 258
+ + D +V TP +++ + L +LS ++ DE
Sbjct: 339 SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 384
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 5e-09
Identities = 57/445 (12%), Positives = 140/445 (31%), Gaps = 132/445 (29%)
Query: 17 KRALTAALTSVETILHSHLAAAKSGPVIPRHD---DIIKSRFSAGTREFHAISRPLDFK- 72
K L+ ++ I+ S + + S+ ++F +++K
Sbjct: 43 KSILSKE--EIDHII-------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 73 --SSIAWQHAQSAVD--DYVAYDDSSKDEGLDISKLDIS-QDIVAALARRGISKLFPIQK 127
S I + Q ++ Y+ D ++ +K ++S L R+ + +L P +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKN 152
Query: 128 AVLEPAMQGRDMIGRARTGTGKT-LA--------------FGI------------PILDK 160
++ G ++G +GKT +A F I +L+
Sbjct: 153 VLI----DG--VLG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 161 IIKFNEKHGRGRNPLCLVLAPTR---ELAKQVEKEFHESAPS------LDTICVYGGTPI 211
+ K + + + + + +S P L +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------N 255
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA------DQMLSVGFAED 265
+ A + ++ T R + + L+ + + LD D++ S+ +
Sbjct: 256 AKAWNAFNLSCKILLTT--RFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSL-LLKY 310
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY---- 321
++ + LP R+ + NP + ++ +S + DG++ +
Sbjct: 311 LDCRPQDLP--REVL-----------------TTNPRRLSIIAES---IRDGLATWDNWK 348
Query: 322 ---------SIATSMNMQKVEN--------ALFSLKQNVMQTAWLMLWLKVI------IV 358
I +S+N+ + ++F ++ ++W VI +V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 359 SLCMGISHKARGRGPFQLSEMDVSI 383
+ S + +S + +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYL 433
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 6e-04
Identities = 55/378 (14%), Positives = 115/378 (30%), Gaps = 122/378 (32%)
Query: 69 LDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKA 128
+DF++ + + + D + D D+ QD+ + I + K
Sbjct: 7 MDFETGEHQYQYKDILSVFE--DAFVDN--FDCK--DV-QDMP-----KSI-----LSKE 49
Query: 129 VLEPAMQGRDMIGRARTGTGKTLAFGIPILDK----IIKFNEKHGRGRNPLCLVLAPTRE 184
++ + +D + F +L K + KF E+ VL +
Sbjct: 50 EIDHIIMSKDAVSGTL------RLFWT-LLSKQEEMVQKFVEE----------VLRINYK 92
Query: 185 -LAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-----IDLIKR 238
L ++ E + PS+ T +Y I + R + D V V +++
Sbjct: 93 FLMSPIKTEQRQ--PSMMTR-MY----IEQRDRLYN---DNQVFAKYNVSRLQPYLKLRQ 142
Query: 239 NALNLSEVQFVVL-----------------DEA--DQM------LSVGFAEDVEVILE-- 271
L L + V++ +M L++ E +LE
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 272 -----RLPQNRQSMMFSATMPP--------WIRSL-TNKYLKNPLTV-DLVGDS------ 310
++ N S ++ +R L +K +N L V V ++
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 311 -----------DQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVS 359
+++ D +S + T+ + + + + L+ +L
Sbjct: 263 NLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQD 317
Query: 360 LCMGISHKARGRGPFQLS 377
L + P +LS
Sbjct: 318 L----PREVLTTNPRRLS 331
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 7e-09
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
Q + +PA+ G++ + A TG+GKT + IL + GR + LA
Sbjct: 10 SYQIELAQPAINGKNALICAPTGSGKTF---VSIL-ICEHHFQNMPAGRKAKVVFLATKV 65
Query: 184 ELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241
+ +Q + F + G + + + D +V TP +++ + L
Sbjct: 66 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 125
Query: 242 N-LSEVQFVVLDEA 254
LS ++ DE
Sbjct: 126 TSLSIFTLMIFDEC 139
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 9e-09
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 12/177 (6%)
Query: 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185
Q + PAM+G++ I A TG GKT + +K +G+ + A +
Sbjct: 18 QLELALPAMKGKNTIICAPTGCGKTFVSLLICE----HHLKKFPQGQKGKVVFFANQIPV 73
Query: 186 AKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN- 242
+Q + F + + G T + + + D ++ TP +++ +K+ +
Sbjct: 74 YEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 133
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LS ++ DE + ++ L Q S+ P + LT
Sbjct: 134 LSIFTLMIFDEC--HNTSKQHPYNMIMFNYLDQKLGG---SSGPLPQVIGLTASVGV 185
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 42/254 (16%), Positives = 86/254 (33%), Gaps = 29/254 (11%)
Query: 35 LAAAKSGPVIPRHDDIIKSRFSAGTREFHAI-SRPLDFKSSIAWQHAQSAVDDYVAYDDS 93
L + ++ + SR ++ + ++ + H V VA
Sbjct: 9 LYFQGAASMLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQ---VRHQVALPP- 64
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+ I++ AR L P Q + +G ++ A T GKT+
Sbjct: 65 ------NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTV-- 116
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
+ + I + K+ + + +P + L+ Q +E +G +
Sbjct: 117 ---VAEYAIAQSLKNKQR----VIYTSPIKALSNQKYRELLA---------EFGDVGLMT 160
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
++ +V T + ++ R + + EV +V+ DE M E + L
Sbjct: 161 GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220
Query: 274 PQNRQSMMFSATMP 287
P + + SAT+P
Sbjct: 221 PDKVRYVFLSATIP 234
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 18/188 (9%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ I++ AR L P Q + +G ++ A T GKT+ + +
Sbjct: 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTV-----VAE 217
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
I + K+ + + +P + L+ Q +E +G + ++
Sbjct: 218 YAIAQSLKNKQR----VIYTSPIKALSNQKYRELLA---------EFGDVGLMTGDITIN 264
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+V T + ++ R + + EV +V+ DE M E + LP +
Sbjct: 265 PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 324
Query: 280 MMFSATMP 287
+ SAT+P
Sbjct: 325 VFLSATIP 332
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 36/162 (22%)
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194
+G + G GKT F +P + + + + R LVLAPTR + ++++ FH
Sbjct: 7 KGMTTVLDFHPGAGKTRRF-LPQI--LAECARRRLRT-----LVLAPTRVVLSEMKEAFH 58
Query: 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-----LIKRNALN---LSEV 246
G + +A G+ VID + L +
Sbjct: 59 -------------GLDVKFHTQAFS-----AHGSGREVIDAMCHATLTYRMLEPTRVVNW 100
Query: 247 QFVVLDEADQM-LSVGFAEDVEVILERLPQNRQSMMFSATMP 287
+ +++DEA + + A R ++ +M +AT P
Sbjct: 101 EVIIMDEAHFLDPASIAARGWAAHRARANESATILM-TATPP 141
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 44/177 (24%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
P + + + R I G GKT +P + + + + R L+LAPTR
Sbjct: 7 PDYEVDEDIFRKKRLTIMDLHPGAGKTKRI-LPSI--VREALLRRLRT-----LILAPTR 58
Query: 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-----KR 238
+A ++E+ G PI +Q A+ T ++DL+
Sbjct: 59 VVAAEMEEAL-------------RGLPIRYQTPAVKSDH-----TGREIVDLMCHATFTT 100
Query: 239 NALN---LSEVQFVVLDEA-----DQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
L+ + +V+DEA + + G+ + E + +AT P
Sbjct: 101 RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAA-----IFMTATPP 152
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 100.0 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.97 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.97 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.97 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.97 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.96 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.96 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.96 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.96 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.96 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.95 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.95 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.95 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.94 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.93 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.93 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.93 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.92 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.92 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.92 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.91 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.91 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.9 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.9 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.89 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.89 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.89 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.89 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.89 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.87 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.85 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.83 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.83 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.81 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.78 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.73 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.68 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.65 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.59 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.5 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.44 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.31 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.28 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.97 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.37 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 98.34 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 98.31 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 98.28 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 98.22 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 98.22 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 97.98 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 97.78 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 97.67 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 97.63 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 97.55 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 97.54 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.44 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 97.36 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.3 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 97.3 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 97.02 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.01 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.87 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 95.9 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.78 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.77 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.74 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 96.71 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.68 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.67 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.62 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.58 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 96.47 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.44 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 96.43 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.39 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.33 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.22 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.17 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 96.17 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 96.13 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 96.05 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.97 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 95.95 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 95.92 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.81 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 95.77 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 95.7 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.64 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.57 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.56 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.53 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.49 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.48 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.47 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 95.43 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.36 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.34 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.34 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.32 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.27 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 95.22 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.1 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.93 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.9 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.84 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.77 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 94.66 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 94.66 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 94.61 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 94.52 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 94.27 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 94.23 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 94.15 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.04 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 94.03 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 93.99 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 93.92 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.83 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 93.81 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 93.72 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.68 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 93.67 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 93.64 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 93.63 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 93.63 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 93.59 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 93.58 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 93.44 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 93.29 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 93.1 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 93.06 | |
| 3hjh_A | 483 | Transcription-repair-coupling factor; MFD, mutatio | 93.04 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 92.74 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 92.71 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 92.65 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 92.51 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 92.46 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 92.26 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 91.94 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 91.85 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 91.78 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 91.61 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 91.37 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 91.28 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 90.79 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 90.65 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 90.6 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 90.52 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 90.32 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 90.32 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 90.28 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 90.01 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 89.92 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 89.92 | |
| 2l8b_A | 189 | Protein TRAI, DNA helicase I; RECD, hydrolase; NMR | 89.65 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 89.59 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 89.26 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 89.18 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 89.05 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 88.99 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 88.76 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 88.62 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 88.47 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 88.26 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 88.07 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 87.9 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 87.82 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 87.39 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 87.29 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 87.13 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 87.01 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 86.79 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 86.6 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 86.5 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 86.46 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 86.46 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 86.42 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 85.52 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 85.3 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 85.17 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 85.13 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 85.09 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 84.89 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 84.89 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 84.8 | |
| 3u4q_B | 1166 | ATP-dependent helicase/deoxyribonuclease subunit; | 84.65 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 84.45 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 84.1 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 83.85 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 83.74 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 83.72 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 83.66 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 83.44 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 83.38 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 83.25 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 83.01 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 83.0 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 82.92 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 82.48 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 82.3 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 82.08 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 81.59 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 81.42 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 81.06 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 81.03 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 80.77 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 80.54 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 80.27 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 80.24 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 80.17 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 80.12 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=348.70 Aligned_cols=286 Identities=28% Similarity=0.396 Sum_probs=247.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
+.+..+|+++++++.++++|.++||.+|||+|.++|+.+++|+|+++++|||||||++|++|++..+...... ....++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~ 130 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRP 130 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCC
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCc
Confidence 3456789999999999999999999999999999999999999999999999999999999999998763221 123477
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
++|||+||++|+.|+++.+++++. ++.+.+++||.....+...+..+++|+|+||++|.+++.++...+.++++||||
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 899999999999999999999874 467788999999888888888899999999999999999888889999999999
Q ss_pred CcccccCCChHHHHHHHHHHC--CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 253 EADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l--~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
|||+|++++|...+..++..+ ++++|+++||||+|+.+..++..++.++..+.+... ......+.+.+..+. ...
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~~-~~~ 287 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--GGACSDVKQTIYEVN-KYA 287 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--TCCCTTEEEEEEECC-GGG
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--cccccccceEEEEeC-cHH
Confidence 999999999999999999885 578999999999999999999999999998876422 244556777766654 344
Q ss_pred hHHHHHHH-------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENALFS-------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~~~-------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|...++.. ..+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 288 k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 354 (434)
T 2db3_A 288 KRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354 (434)
T ss_dssp HHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEE
T ss_pred HHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 54444333 2377888999999999999999999999999999999999998874
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=328.05 Aligned_cols=281 Identities=30% Similarity=0.458 Sum_probs=245.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.....|+++++++.++++|.++||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~ 107 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQ 107 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCC
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999987632 134678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++||++|+.|+++.+.+++. ++.+..++|+.........+..+++|+|+||+++.+.+..+...+.++++|||||
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 99999999999999999999875 4567778899888888888888899999999999999998888899999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+++|...+..++..++++.|++++|||+++.+.++...++.+|..+.+. .......++.+++........+.+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~ 265 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFD 265 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHH
Confidence 999999999999999999999999999999999999999999999999887653 233456677888777766555655
Q ss_pred HHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 266 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (410)
T 2j0s_A 266 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 330 (410)
T ss_dssp HHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred HHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEE
Confidence 54332 2367788888999999999999999999999999999999998874
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=323.40 Aligned_cols=286 Identities=29% Similarity=0.422 Sum_probs=240.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc--------
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK-------- 167 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~-------- 167 (384)
.+..+|+++++++.++++|..+||..|||+|.++|+.++.|+|+++++|||+|||++|++|++..+......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 445679999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred ----cCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC
Q 016712 168 ----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241 (384)
Q Consensus 168 ----~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~ 241 (384)
.....++++||++||++|+.|+++.+++++. ++.+..++|+.....+...+..+++|+|+||++|.+.+..+..
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 0112347899999999999999999998764 5678888999888888888888899999999999999998888
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHH--CCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCC
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~--l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (384)
.+.++++|||||+|++.+++|...+..++.. ++. ..|++++|||+++.+..+...++.++..+.+.. ......+
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 249 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSEN 249 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSS
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCccC
Confidence 8999999999999999999999999999885 333 689999999999999999999999998877632 2344566
Q ss_pred eEEEEEEeccchhhHHHHHHH---------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcc
Q 016712 318 ISLYSIATSMNMQKVENALFS---------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVS 382 (384)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~~---------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~ 382 (384)
+.+.++... ...+...+... ..+.++.++..|...+..+..+||+|+.++|++++++|++|+++
T Consensus 250 i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 250 ITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp EEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred ceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 776666654 34444444332 22678888899999999999999999999999999999999988
Q ss_pred cC
Q 016712 383 IY 384 (384)
Q Consensus 383 V~ 384 (384)
|+
T Consensus 329 vl 330 (417)
T 2i4i_A 329 IL 330 (417)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=316.73 Aligned_cols=280 Identities=28% Similarity=0.411 Sum_probs=236.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
....|+++++++.+.+.|.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 111 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQA 111 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSCCE
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCceeE
Confidence 3457999999999999999999999999999999999999999999999999999999999987643 1246789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
||++||++|+.|+.+.+++++. +..+....|+.........+. .+++|+|+||++|.+.+..+...+.++++|||||
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred EEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 9999999999999999999864 456677788887777666665 5689999999999999998888889999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+++|...+..++..++++.|+++||||+++.+..+...++.++..+... ........+.+++......+.+..
T Consensus 192 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 192 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK--KEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp HHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC--CCCCCTTSCCEEEEECSSSTTHHH
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec--CCccCCCCceEEEEEeChHHhHHH
Confidence 999999999999999999999999999999999999999999999999888653 233455667777777766666666
Q ss_pred HHHHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+.... .+.++.++..|...++.+..+||+|+.++|++++++|++|+++|+
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 334 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVL 334 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CE
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 554332 377888999999999999999999999999999999999998874
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=311.21 Aligned_cols=279 Identities=29% Similarity=0.436 Sum_probs=237.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
..+..|+++++++.++++|.++||..|+|+|.++++.+++|+++++++|||+|||++|++|++..+.. ...+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 34568999999999999999999999999999999999999999999999999999999999987632 124668
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++|+++|+.|+++.+++++. ++.+...+|+.........+..+++|+|+||+++.+.+......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999876 4667778888877777677777899999999999999988888899999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+.+|...+..++..+++..|+++||||+++.+......++.++..+.+... ....++.+++.... ...+..
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~k~~ 247 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVE-ERQKLH 247 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECC-GGGHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEec-hhhHHH
Confidence 99999888999999999999889999999999999999999999999988765432 34456666666554 333433
Q ss_pred HHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+.. +..+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 248 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 312 (400)
T 1s2m_A 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312 (400)
T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Confidence 3322 22377888899999999999999999999999999999999998874
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=295.09 Aligned_cols=214 Identities=36% Similarity=0.645 Sum_probs=194.3
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.+.+..+|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... .....+
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~ 102 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDG 102 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCC
Confidence 4456678999999999999999999999999999999999999999999999999999999999998864221 112357
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
+++|||+||++|+.|+++.++++.. ++.+.+++|+.........+..+++|+|+||+++.+++..+...++++++|||
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 8899999999999999999988753 57788899999988888888889999999999999999988888999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
||||++++++|...+..+++.+++++|+++||||+|+.+.+++..++++|+.|.+.+
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999999998753
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=305.81 Aligned_cols=278 Identities=25% Similarity=0.410 Sum_probs=235.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.++++|.++||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.. ...++++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEE
Confidence 46999999999999999999999999999999999999999999999999999999999987632 123568999
Q ss_pred EecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
++||++|+.|+.+.++++.. ++.+..++|+.........+..+ ++|+|+||+++...+......+.++++||||||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 99999999999999998753 67788889988877766666554 799999999999999888888999999999999
Q ss_pred ccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 255 DQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 255 h~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
|++.++ ++...+..++...+.+.|++++|||+++.+..+...++.++..+.+... .......+.+++.... ...+..
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 239 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE-TKLTLHGLQQYYVKLK-DNEKNR 239 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC-CCCCCTTCEEEEEECC-GGGHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc-cccCcccceEEEEEcC-chhHHH
Confidence 999884 6888899999999889999999999999999999999999998876433 2234455666666554 334444
Q ss_pred HHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...|+.+..+||+|+.++|++++++|++|+++|+
T Consensus 240 ~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 304 (391)
T 1xti_A 240 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 304 (391)
T ss_dssp HHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 33322 2367788899999999999999999999999999999999998874
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=290.39 Aligned_cols=212 Identities=36% Similarity=0.552 Sum_probs=183.4
Q ss_pred CCCCCCCccC-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC
Q 016712 94 SKDEGLDISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (384)
Q Consensus 94 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 172 (384)
.+.+...|++ +++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+...........
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3455677888 799999999999999999999999999999999999999999999999999999998754332222346
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
++++||++||++|+.|+++.++++. .++.+.+++|+.........+..+++|+|+||+++.+++..+...++++++|||
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 7889999999999999999999985 467888899998888777888888999999999999999888888999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEE
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 305 (384)
||||++.+++|...+..++..+++++|+++||||+|+.+.+++..++++|+.|.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999875
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=308.15 Aligned_cols=278 Identities=23% Similarity=0.317 Sum_probs=234.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.....|+++++++.++++|.++||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.. ...+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~ 95 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKY 95 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCS
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCC
Confidence 34567999999999999999999999999999999999987 999999999999999999999987743 1345
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFV 249 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~v 249 (384)
+++||++||++|+.|+++.++++.. ++.+....++...... ...+++|+|+||+++.+++.. ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 6899999999999999999988764 5667777766544322 133579999999999999865 56677899999
Q ss_pred EEeCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc
Q 016712 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328 (384)
Q Consensus 250 ViDEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 328 (384)
||||+|++.+ .++...+..+...++.+.|++++|||+++.+..+...++.++..+.+. ........+.+++......
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK--REEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCC--GGGSSCTTEEEEEEECSSH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeec--cccccccCceEEEEEcCCh
Confidence 9999999987 678888999999999999999999999999999999999999888764 3345566777787777666
Q ss_pred hhhHHHHHHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 329 MQKVENALFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 329 ~~k~~~l~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+...+.... .+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 251 ~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 320 (412)
T 3fht_A 251 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 320 (412)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEE
Confidence 66665553322 377889999999999999999999999999999999999998874
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=311.70 Aligned_cols=279 Identities=27% Similarity=0.427 Sum_probs=183.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
....|+++++++.++++|.+.||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+.. ...++++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 3467999999999999999999999999999999999999999999999999999999999987643 1346789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||++|+++|+.|+++.+.+++. ++.+..++|+.........+. +++|+|+||+++.+.+..+...+.++++||+||+
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 9999999999999999999875 467778888887766655554 5899999999999999888888899999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccch-----
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM----- 329 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~----- 329 (384)
|++.+++|...+..++..++++.|++++|||+++.+..+...++.++..+..... .....++.+++......+
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD--ELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc--cccCCCceEEEEEcCchhhHHHH
Confidence 9999999999999999999999999999999999999999999999988876432 122233333333222111
Q ss_pred ---------hhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 330 ---------QKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 330 ---------~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+...++++..+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 250 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 313 (394)
T 1fuu_A 250 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRIL 313 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEE
Confidence 1223345667788889999999889999999999999999999999999998874
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=302.29 Aligned_cols=274 Identities=24% Similarity=0.343 Sum_probs=231.1
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
.+|+++++++.++++|.++||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.. ...++++
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 78 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQA 78 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCccE
Confidence 57999999999999999999999999999999999998 899999999999999999999987633 1346789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||++|+++|+.|+++.+++++. ++.+...+++...... ..+++|+|+||+++.+.+......+.++++|||||+
T Consensus 79 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 154 (395)
T 3pey_A 79 ICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEA 154 (395)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEECh
Confidence 9999999999999999999774 4455556655432221 235899999999999999888888999999999999
Q ss_pred ccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 255 DQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 255 h~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
|++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+.... .......+.+.+........+..
T Consensus 155 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHH
T ss_pred hhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHH
Confidence 99987 6788999999999999999999999999999999999999988876532 23445566677666655555555
Q ss_pred HHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 297 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 297 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEE
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 44332 2377888999999999999999999999999999999999998874
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=278.46 Aligned_cols=201 Identities=35% Similarity=0.586 Sum_probs=184.4
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.+|+++++++.++++|.++||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~l 75 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAM 75 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEE
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEE
Confidence 457999999999999999999999999999999999999999999999999999999999987632 13467899
Q ss_pred EEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
|++||++|+.|+++.++++.. +..+..++|+.........+..+++|+|+||+++.+.+..+...++++++||+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 999999999999999998864 56778888988887777777788999999999999999888888999999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEE
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 304 (384)
|++.+.+|...+..++..+++++|+++||||+|+.+.+++..++.+|+.|
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999899999999999999999999999999876
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=297.90 Aligned_cols=273 Identities=30% Similarity=0.479 Sum_probs=232.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
...+|+++++++.++++|.++||.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+.. ..+.+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~ 76 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 76 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCc
Confidence 3467999999999999999999999999999999999988 699999999999999999999887632 34678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++|+++|+.|+++.+.+++. ++.+...+|+.........+. +++|+|+||+++.+.+..+...+.++++||+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 99999999999999999999764 466777888887766655554 589999999999999988888899999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+++|...+..++..++++.+++++|||+++....+...++.++..+.... ...+.+.+.... ...+.+
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~ 228 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVN-ENERFE 228 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECC-GGGHHH
T ss_pred chHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeC-hHHHHH
Confidence 9999999999999999999999999999999999999999999998877765421 224445554443 345555
Q ss_pred HHHHH-------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS-------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~-------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...+..+..+||+|+.++|++++++|++|+.+|+
T Consensus 229 ~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 292 (367)
T 1hv8_A 229 ALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292 (367)
T ss_dssp HHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 44332 3377888999999999999999999999999999999999998874
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=322.23 Aligned_cols=288 Identities=25% Similarity=0.381 Sum_probs=230.2
Q ss_pred CCCCCCccCCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc
Q 016712 95 KDEGLDISKLD----ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168 (384)
Q Consensus 95 ~~~~~~f~~l~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~ 168 (384)
......|+++. +++.++++|.++||..|+|+|.++|+.++ .|+|+++++|||+|||++|++|++..+......
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~- 91 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD- 91 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-
Confidence 34445565554 99999999999999999999999999999 788999999999999999999999988763221
Q ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHHhC------CCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHcc-C
Q 016712 169 GRGRNPLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN-A 240 (384)
Q Consensus 169 ~~~~~~~~lvl~Pt~~La~q~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~-~ 240 (384)
...++++|||+||++|+.|+++.+++++ +.+.+..+.|+.........+.. +++|+|+||++|.+++... .
T Consensus 92 -~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~ 170 (579)
T 3sqw_A 92 -SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSN 170 (579)
T ss_dssp -STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred -ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccc
Confidence 1336789999999999999999999864 34567788888887777766644 7999999999999988764 4
Q ss_pred CCCCCccEEEEeCcccccCCChHHHHHHHHHHCC-------CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC--CCc
Q 016712 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSD 311 (384)
Q Consensus 241 ~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~ 311 (384)
..++++++|||||||++++++|...+..++..++ .++|+++||||+++.+..++..++.++..+.+.. ...
T Consensus 171 ~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~ 250 (579)
T 3sqw_A 171 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE 250 (579)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS
T ss_pred cccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccc
Confidence 4678899999999999999999999998887763 3789999999999999999999999887665432 223
Q ss_pred ccccCCeEEEEEEeccchhhHHHHHH-------------------HHhHhHHHHHHHHHhh---cceEEEecCCCChhhh
Q 016712 312 QKLADGISLYSIATSMNMQKVENALF-------------------SLKQNVMQTAWLMLWL---KVIIVSLCMGISHKAR 369 (384)
Q Consensus 312 ~~~~~~i~~~~~~~~~~~~k~~~l~~-------------------~~~~~~~~~~~~l~~~---~~~v~~~hg~m~~~eR 369 (384)
......+.+.+........+....+. ...+.++.++..|... ++.+..+||+|++++|
T Consensus 251 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 251 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred cccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 34445566666655543332222211 1225677888888776 8999999999999999
Q ss_pred hchhhhhhcCCcccC
Q 016712 370 GRGPFQLSEMDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~~~~~V~ 384 (384)
++++++|++|+++|+
T Consensus 331 ~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 331 TSLVKRFKKDESGIL 345 (579)
T ss_dssp HHHHHHHHHCSSEEE
T ss_pred HHHHHHhhcCCCeEE
Confidence 999999999998874
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=276.71 Aligned_cols=204 Identities=48% Similarity=0.834 Sum_probs=187.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+|+++++++.+.+.|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.... ....++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEEE
Confidence 589999999999999999999999999999999999999999999999999999999998874311 12357789999
Q ss_pred ecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+||++|+.|+++.+++++..+.+..++|+.........+..+++|+|+||+++.+.+..+...+.++++||+||||++.+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999999999988888899999888777777778899999999999999988888899999999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
.+|...+..++..++++.|+++||||+++.+.++++.++.+|..|.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999998865
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=317.92 Aligned_cols=287 Identities=25% Similarity=0.382 Sum_probs=228.7
Q ss_pred CCCCCccCCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccC
Q 016712 96 DEGLDISKLD----ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (384)
Q Consensus 96 ~~~~~f~~l~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~ 169 (384)
.....|+++. +++.++++|.++||..|+|+|.++|+.++ .++|+++++|||+|||++|++|+++.+......
T Consensus 65 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-- 142 (563)
T 3i5x_A 65 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-- 142 (563)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--
Confidence 3445565554 99999999999999999999999999999 678999999999999999999999998764321
Q ss_pred CCCCCEEEEEecCHHHHHHHHHHHHHhC------CCCceEEEECCCChHHHHHHH-hcCCCEEEECchhHHHHHHcc-CC
Q 016712 170 RGRNPLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN-AL 241 (384)
Q Consensus 170 ~~~~~~~lvl~Pt~~La~q~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~-~~~~~IlV~Tp~~l~~~l~~~-~~ 241 (384)
...++++|||+||++|+.|+++.++++. ....+..++|+.........+ ..+++|+|+||++|.+++... ..
T Consensus 143 ~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 222 (563)
T 3i5x_A 143 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 222 (563)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccc
Confidence 1235689999999999999999999853 245577788888877766666 447999999999999988764 34
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCC-------CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC--CCcc
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSDQ 312 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~ 312 (384)
.++++++|||||||++++++|...+..++..++ .++|+++||||+++.+..++..++.++..+.+.. ....
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 302 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 302 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCc
Confidence 578899999999999999999999998887753 3789999999999999999999998887665432 2223
Q ss_pred cccCCeEEEEEEeccchhhHHHHHH-------------------HHhHhHHHHHHHHHhh---cceEEEecCCCChhhhh
Q 016712 313 KLADGISLYSIATSMNMQKVENALF-------------------SLKQNVMQTAWLMLWL---KVIIVSLCMGISHKARG 370 (384)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~-------------------~~~~~~~~~~~~l~~~---~~~v~~~hg~m~~~eR~ 370 (384)
.....+.+.+........+....+. ...+.++.++..|... ++.+..+||+|++++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 303 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382 (563)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred cccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Confidence 4445566666655543333222211 1226667788888776 89999999999999999
Q ss_pred chhhhhhcCCcccC
Q 016712 371 RGPFQLSEMDVSIY 384 (384)
Q Consensus 371 ~il~~F~~~~~~V~ 384 (384)
+++++|++|+++|+
T Consensus 383 ~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 383 SLVKRFKKDESGIL 396 (563)
T ss_dssp HHHHHHHHCSSEEE
T ss_pred HHHHHHhcCCCCEE
Confidence 99999999998874
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=319.45 Aligned_cols=276 Identities=23% Similarity=0.334 Sum_probs=172.9
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
...|+++++++.++++|.++||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.. ...+++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~~ 164 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQ 164 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSCC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCCc
Confidence 457999999999999999999999999999999999987 899999999999999999999987633 123568
Q ss_pred EEEEecCHHHHHHHHHHHHHhC---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEEE
Q 016712 176 CLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVL 251 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vVi 251 (384)
+|||+||++|+.|+++.++++. +++.+.+..++...... ...+++|+|+||++|.+++.. ..+.+.++++|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999988888764 35667777666543322 133579999999999999865 4567889999999
Q ss_pred eCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 252 DEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 252 DEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
||+|++++ .+|...+..+.+.++.++|++++|||+++.+..+...++.++..+.+... ......+.++++.+.....
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc--ccCcCCceEEEEEeCCHHH
Confidence 99999987 57888889999999999999999999999999999999999988876432 2333444444443332222
Q ss_pred h--------------HHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 K--------------VENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k--------------~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+ ...+++...+.++.++..|...+..+..+||+|+..+|++++++|++|+++|+
T Consensus 320 ~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iL 387 (479)
T 3fmp_B 320 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 2 23345567788889999999999999999999999999999999999999875
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=281.63 Aligned_cols=204 Identities=33% Similarity=0.535 Sum_probs=182.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.+...|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~~~~ 94 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENLSTQ 94 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCC
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCce
Confidence 44567999999999999999999999999999999999999999999999999999999999988643 134678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+||++||++|+.|+++.+++++. ++.+.+++|+.........+ .+++|+|+||+++.+.+..+...++++++||||
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 99999999999999999999864 57788888888776665555 468999999999999998888888999999999
Q ss_pred CcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||++.+++ |...+..+++.++.++|+++||||+|+.+.+++..++.+|..|.+
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999987 999999999999999999999999999999999999999998865
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=283.23 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=182.3
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 77 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVI 77 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEE
Confidence 56999999999999999999999999999999999999999999999999999999999988643 124678999
Q ss_pred EecCHHHHHHHHHHHHHhCC------CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 179 LAPTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
++||++|+.|+++.++++.. ++.+.+++|+.........+..+++|+|+||+++.+.+..+...+.++++||||
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988764 456777888876665555555678999999999999998888888999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||++.+++|...+..++..+++++|+++||||+|+.+.++++.++.+|..|.+
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999999999999999999999999999999998876
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=282.49 Aligned_cols=203 Identities=34% Similarity=0.584 Sum_probs=185.9
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~l 115 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFAL 115 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCEE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceEE
Confidence 4679999999999999999999999999999999999999999999999999999999999988652 2467899
Q ss_pred EEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vViDEa 254 (384)
|++||++|+.|+++.+++++. ++.+.+++|+.....+...+..+++|+|+||+++.+.+.. ....+.++++||||||
T Consensus 116 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 116 VLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp EECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 999999999999999998754 5678888999888777777788899999999999999876 4567899999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|++.+++|...+..++..+++++|+++||||+++.+.+++..++.+|+.|.+
T Consensus 196 h~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999998875
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=282.87 Aligned_cols=205 Identities=33% Similarity=0.551 Sum_probs=175.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.+..+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~ 100 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQ 100 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCC
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999988632 124678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+||++||++|+.|+++.+++++. ++.+..++|+.....+...+..+ ++|+|+||+++.+.+..+...+.++++||||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 99999999999999999999875 45677778887766666666555 8999999999999998888889999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||++.+++|...+..+++.++.++|+++||||+|+.+.+++..++++|+.|.+
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999998865
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=292.91 Aligned_cols=202 Identities=27% Similarity=0.443 Sum_probs=179.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
...+|+++++++.++++|.++||..||++|.++|+.++.| +|+++++|||||||++|++|++..+.. ...++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCc
Confidence 4568999999999999999999999999999999999998 999999999999999999999988743 23467
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vV 250 (384)
++|||+||++||.|+++.++.++. ++.+.+..|+....... ..+++|+||||++|.+++.. +.+.++++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 899999999999999999998764 56777777776543321 44689999999999999965 567789999999
Q ss_pred EeCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 251 iDEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
|||||+|++ .+|...+..+++.+++++|+++||||+++.+..++..++.+|+.|.+.
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999997 689999999999999999999999999999999999999999999874
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=285.85 Aligned_cols=211 Identities=36% Similarity=0.595 Sum_probs=186.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc---cCCCCC
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRN 173 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---~~~~~~ 173 (384)
+...|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+...... .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 44679999999999999999999999999999999999999999999999999999999999988653211 012345
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
+++|||+||++|+.|+++.+++++. ++.+..++|+.....+...+..+++|+|+||++|.+.+..+...++++++|||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 7899999999999999999998764 46677888998888887888888999999999999999988888999999999
Q ss_pred eCcccccCCChHHHHHHHHHHC--CC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 252 DEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l--~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
||||++++++|+..+..++..+ +. ++|+++||||+++.+..++..++.+|+.|.+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999999953 44 78999999999999999999999999999874
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=276.78 Aligned_cols=210 Identities=31% Similarity=0.532 Sum_probs=183.9
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
..+...|+++++++.+.+.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... ....++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 345567999999999999999999999999999999999999999999999999999999999998865321 112467
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vVi 251 (384)
++||++||++|+.|+++.+++++.. +.+.+++|+.........+ .+++|+|+||+++.+.+... ...+.++++|||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 8999999999999999999998753 6777888887776665555 46899999999999988765 567889999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
||||++.+++|...+..++..+++++|+++||||+++.+.++++.++.+|..|.+.
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998763
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=274.24 Aligned_cols=204 Identities=33% Similarity=0.552 Sum_probs=176.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
....|+++++++.+++.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~~ 85 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 85 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCceE
Confidence 3467999999999999999999999999999999999999999999999999999999999988743 1346789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||++||++|+.|+++.+++++. ++.+..++|+.........+.. ++|+|+||+++.+.+..+...++++++||||||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 9999999999999999999865 5667778888776665555544 899999999999999888888999999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
|++.+++|...+..++..++++.|+++||||+++.+.+++..++.+|+.|.+.
T Consensus 165 h~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 165 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999998764
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=280.00 Aligned_cols=204 Identities=33% Similarity=0.543 Sum_probs=178.4
Q ss_pred CCCCccCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 97 EGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 97 ~~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
+...|++++ +++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+...... ...+.
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~ 127 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGT 127 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCC
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCc
Confidence 445677777 99999999999999999999999999999999999999999999999999999988653211 12467
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vVi 251 (384)
++||++||++|+.|+++.+++++. +..+..++|+.........+..+++|+|+||+++.+.+... ...++++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 899999999999999999999875 45677888988888888888888999999999999988765 467899999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCe
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 302 (384)
||||++++++|+..+..+++.++.++|+++||||+|+.++++++.+++++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999987543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=270.46 Aligned_cols=201 Identities=29% Similarity=0.512 Sum_probs=180.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++||
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~li 87 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 87 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEEE
Confidence 56999999999999999999999999999999999999999999999999999999999987632 123568999
Q ss_pred EecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
++||++|+.|+++.++++.. ++.+.+++|+.........+.. .++|+|+||+++.+.+..+...+.++++||||||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 99999999999999998864 5778888898887777666655 4799999999999999888888999999999999
Q ss_pred ccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEE
Q 016712 255 DQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (384)
Q Consensus 255 h~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 305 (384)
|++.+ .+|...+..+++.+++++|++++|||+++.+.++++.++.+|+.|.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99987 4788899999999988999999999999999999999999999875
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=278.79 Aligned_cols=257 Identities=28% Similarity=0.465 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+++.+.++|.++||..|+|+|.++++.+++|+++++++|||+|||++|++|++.. +.++||++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 5789999999999999999999999999999999999999999999999998763 5679999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 186 a~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
+.|+++.+++++. +..+..++|+.........+.. ++|+|+||++|.+.+......+.++++||+||+|++.++++.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 9999999999765 4677778888877766655554 899999999999999888778899999999999999999999
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH-------
Q 016712 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL------- 336 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~------- 336 (384)
..+..++..++...+++++|||+++.+......++.++..+... ....++.+.+.............+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSKVQALRENKDKG 222 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHHHHHHHTCCCSS
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999988877532 223344444444432221111111
Q ss_pred ----HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 ----FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 ----~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+.++.++..|. .+..+||+|+.++|++++++|++|+++|+
T Consensus 223 ~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 270 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDML 270 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred EEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEE
Confidence 112244444444443 68899999999999999999999998874
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=269.04 Aligned_cols=208 Identities=27% Similarity=0.455 Sum_probs=173.7
Q ss_pred CCCCCCccCC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCC
Q 016712 95 KDEGLDISKL----DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (384)
Q Consensus 95 ~~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 170 (384)
+.+..+|+++ ++++.++++|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. ..
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-----~~ 95 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----PA 95 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-----CC
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----cc
Confidence 4455678776 89999999999999999999999999999999999999999999999999999988743 12
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHH-HHHhcCCCEEEECchhHHHHHHcc--CCCCCC
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM-RALDYGVDAVVGTPGRVIDLIKRN--ALNLSE 245 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~ 245 (384)
..++++||++||++|+.|+++.+++++.. +.+..++|+....... .....+++|+|+||+++.+++... ...+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 34678999999999999999999998763 4444444443221111 122346899999999999999876 467899
Q ss_pred ccEEEEeCcccccC---CChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 246 VQFVVLDEADQMLS---VGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 246 l~~vViDEah~~~~---~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
+++|||||||++.+ .+|...+..++..+. .+.|+++||||+|+.+.+++..++++|+.|.+.
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999987 468889998888764 578999999999999999999999999999874
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=291.07 Aligned_cols=269 Identities=14% Similarity=0.170 Sum_probs=206.4
Q ss_pred CCccCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.+.++++++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++++|
T Consensus 21 w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~l 88 (591)
T 2v1x_A 21 WNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTL 88 (591)
T ss_dssp GCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEE
T ss_pred cccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEE
Confidence 455678899999999999 69999999999999999999999999999999999999999742 46899
Q ss_pred EEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH------hcCCCEEEECchhHHH---HHH--ccCCCCCCc
Q 016712 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL------DYGVDAVVGTPGRVID---LIK--RNALNLSEV 246 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~IlV~Tp~~l~~---~l~--~~~~~~~~l 246 (384)
||+|+++|+.|+.+.+.++ ++.+..++|+....+....+ ..+.+|+|+||++|.. ++. .....+.++
T Consensus 89 VisP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i 166 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRF 166 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCE
T ss_pred EEeCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCC
Confidence 9999999999999999998 47788888887765543322 3468999999998742 221 123456789
Q ss_pred cEEEEeCcccccCCC--hHHHHHH--HHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEE
Q 016712 247 QFVVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (384)
Q Consensus 247 ~~vViDEah~~~~~~--~~~~~~~--il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~ 322 (384)
++|||||||++.+|| |.+.+.. ++....++.|+++||||+++.+...+..++..+..+.+... ....++....
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v 243 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEV 243 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEE
Confidence 999999999999988 7766654 34444567999999999999998888887765433333211 1122333222
Q ss_pred EEecc-chhhHHHHHHH---------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 323 IATSM-NMQKVENALFS---------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 323 ~~~~~-~~~k~~~l~~~---------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..... ...+...++.. .++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~Vl 321 (591)
T 2v1x_A 244 RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVV 321 (591)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred EeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 22211 12233333322 2377889999999999999999999999999999999999998874
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=281.77 Aligned_cols=262 Identities=18% Similarity=0.233 Sum_probs=200.6
Q ss_pred CccCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
+|+++++++.+.+.|.+ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ++.+||
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~lv 70 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVV 70 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEE
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEEE
Confidence 68899999999999999 79999999999999999999999999999999999999998742 457999
Q ss_pred EecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH---HH-hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---AL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
|+|+++|+.|+.+.+++++ +.+..++++....+... .+ ...++|+|+||++|........+...++++||||||
T Consensus 71 i~P~~aL~~q~~~~l~~~g--i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG--VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSG
T ss_pred ECChHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCc
Confidence 9999999999999999874 67777777766544332 22 335899999999985332222334578999999999
Q ss_pred ccccCCC--hHHHHHH---HHHHCCCCCcEEEEEccCChhHHHHHHHhc--CCCeEEEecCCCcccccCCeEEEEEEecc
Q 016712 255 DQMLSVG--FAEDVEV---ILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSM 327 (384)
Q Consensus 255 h~~~~~~--~~~~~~~---il~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 327 (384)
|++.++| |...+.. +...+ ++.+++++|||+++.+.......+ .++..+. .+. ...++.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~----~r~~l~~~v~~~-- 220 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF----DRPNIRYMLMEK-- 220 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCC----CCTTEEEEEEEC--
T ss_pred cccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCC----CCCceEEEEEeC--
Confidence 9999887 6555544 34445 469999999999998766554443 4555443 211 122333222221
Q ss_pred chhhHHHHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 328 NMQKVENALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 328 ~~~k~~~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+...++. +.++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 221 -~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 221 -FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp -SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 223333322 23377889999999999999999999999999999999999998874
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=301.78 Aligned_cols=312 Identities=14% Similarity=0.148 Sum_probs=234.0
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
.+|.+++|.+ +...++|.++ ..++++.+++..|+..+.++..... |..+....+.. ++.++.+.+
T Consensus 518 ~~~~l~vp~~~l~~~~~y~g~~~~~~~l~~l~~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~g~~---~~~~~~~~~ 594 (1151)
T 2eyq_A 518 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA---FKHDREQYQ 594 (1151)
T ss_dssp GGCEEEEEGGGGGGEEECCCSCSSSCCCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC---CCCCHHHHH
T ss_pred CCCceeeeHHHhhhHhcccCCCCCCCchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC---CCCCHHHHH
Confidence 4577888888 8899999766 3568899999999987665543221 22222334443 446888888
Q ss_pred HHHHc-CCCCCcHHHHHHHHHHhC----CC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 113 ALARR-GISKLFPIQKAVLEPAMQ----GR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 113 ~l~~~-g~~~~~~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+.+. +| ++||+|.++++.++. |+ |+++++|||+|||++|+++++..+. .+++++|++||++|
T Consensus 595 ~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~vlvlvPt~~L 664 (1151)
T 2eyq_A 595 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQVAVLVPTTLL 664 (1151)
T ss_dssp HHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCEEEEECSSHHH
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCeEEEEechHHH
Confidence 88764 66 589999999999886 55 9999999999999999999988762 47799999999999
Q ss_pred HHHHHHHHHHhCCC--CceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 186 AKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 186 a~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+.|+++.+.+.+.+ +++..+.+.....+.. ..+.. .++|+|+||+.+ ...+.++++++|||||+|+
T Consensus 665 a~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvIiDEaH~--- 736 (1151)
T 2eyq_A 665 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHR--- 736 (1151)
T ss_dssp HHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGG---
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceEEEechHh---
Confidence 99999999988764 4566666665544432 33444 499999999755 2456789999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH---
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL--- 336 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~--- 336 (384)
|+.....+++.++.++++++||||+++++..+...++.++..+...+.. ...+..+...... ..-.+.++
T Consensus 737 --~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~----r~~i~~~~~~~~~-~~i~~~il~~l 809 (1151)
T 2eyq_A 737 --FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR----RLAVKTFVREYDS-MVVREAILREI 809 (1151)
T ss_dssp --SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB----CBCEEEEEEECCH-HHHHHHHHHHH
T ss_pred --cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC----ccccEEEEecCCH-HHHHHHHHHHH
Confidence 4556677788888889999999999999998888888777666543322 1223334333221 11112221
Q ss_pred ---------HHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 ---------FSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 ---------~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+.++.++..|... +.++..+||+|++++|++++++|++|+++|+
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VL 868 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 868 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 22336778888888877 8899999999999999999999999999885
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=273.08 Aligned_cols=252 Identities=18% Similarity=0.180 Sum_probs=192.5
Q ss_pred HHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 108 QDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 108 ~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+.+.+.+.+. || +|+|+|.++++.+++|+|+++++|||+|||++|++|++..+ ..++++|||+||++|+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHH
Confidence 3566667764 66 79999999999999999999999999999999999988765 3478899999999999
Q ss_pred HHHHHHHHHhCC-CCceEEEECCCCh---HHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC--
Q 016712 187 KQVEKEFHESAP-SLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-- 259 (384)
Q Consensus 187 ~q~~~~~~~~~~-~~~~~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~-- 259 (384)
.|+++.+++++. ++.+..++|+... ..+...+..+ ++|+|+||+++.+.+.. +.+.++++|||||||++.+
T Consensus 78 ~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~ 155 (414)
T 3oiy_A 78 KQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKAS 155 (414)
T ss_dssp HHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCH
T ss_pred HHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhcc
Confidence 999999999876 6788889999887 5555666666 99999999999888764 5677999999999987654
Q ss_pred ---------CChHHH-HHHHHHHCC-----------CCCcEEEEEcc-CChhHH-HHHHHhcCCCeEEEecCCCcccccC
Q 016712 260 ---------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIR-SLTNKYLKNPLTVDLVGDSDQKLAD 316 (384)
Q Consensus 260 ---------~~~~~~-~~~il~~l~-----------~~~q~l~~SAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~ 316 (384)
.+|... +..++..++ .+.|++++||| +|..+. .+...++. +.+ ........
T Consensus 156 ~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~--~~~~~~~~ 229 (414)
T 3oiy_A 156 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTV--GRLVSVAR 229 (414)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCS--SCCCCCCC
T ss_pred chhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCc--Cccccccc
Confidence 567777 788888776 78999999999 565544 33333332 111 12223445
Q ss_pred CeEEEEEEeccchhhHHHHHH----------HHhHhHHHHHHHHHhhcceEE-EecCCCChhhhhchhhhhhcCCcccC
Q 016712 317 GISLYSIATSMNMQKVENALF----------SLKQNVMQTAWLMLWLKVIIV-SLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 317 ~i~~~~~~~~~~~~k~~~l~~----------~~~~~~~~~~~~l~~~~~~v~-~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++.+.+..... ..+...++. +..+.++.++..|...|+.+. .+||+ +|+ +++|++|+++|+
T Consensus 230 ~i~~~~~~~~~-~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 230 NITHVRISSRS-KEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp SEEEEEESSCC-HHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred cchheeeccCH-HHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 56666655432 222222222 233778889999999999998 99995 444 999999999874
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=299.87 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=164.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
.|..+++++.+...+...++..|+|+|.++|+.+..|+++++++|||||||++|++|++..+. .+.+++|+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---------~g~rvlvl 233 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYT 233 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------TTCEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEEE
Confidence 466677777777777777777899999999999999999999999999999999999998873 37789999
Q ss_pred ecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+||++|+.|+++.+.+.+. .+.+++|+.... .+++|+|+||++|.+++..+...+.++++|||||||++.+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~--~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG--DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS--SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cCcHHHHHHHHHHHHHHhC--CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 9999999999999999885 667778876533 3589999999999999988877788999999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChh--HHHHHHHhcCCCeEEEe
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPW--IRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~ 306 (384)
++|+..+..++..+++++|+|+||||+|+. +..++..+...+..+..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~ 353 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 353 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEE
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe
Confidence 999999999999999999999999999875 34666666666666544
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=288.35 Aligned_cols=184 Identities=22% Similarity=0.341 Sum_probs=160.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.|+++++++.+.+.+.+.||..|+|+|.++++. +..++++++++|||||||++|.+|+++.+.. .+.+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEEE
Confidence 589999999999999999999999999999998 8899999999999999999999999988763 2678999
Q ss_pred EecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
++|+++|+.|+++.++.+.+ ++.+..++|+...... ...+++|+|+||+++..++......++++++|||||+|++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999999975543 6788888887654432 1235899999999999988877767889999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.+++++..+..++..++.+.|+|+||||+++. ..+..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~ 187 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE 187 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH
Confidence 99889999999999987789999999999863 44444
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=281.10 Aligned_cols=187 Identities=22% Similarity=0.335 Sum_probs=159.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
+...|+++++++.+.+.+.+.||..|+|+|.++++. +..++++++++|||||||++|.++++..+.. .+.+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~ 77 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGK 77 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCe
Confidence 346799999999999999999999999999999999 7889999999999999999999999988753 2678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
++|++|+++|+.|+++.++.+.. ++.+...+|+...... .+ .+++|+|+||+++..++......++++++|||||+
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 154 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDEL 154 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSG
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEech
Confidence 99999999999999999965443 5777778887654432 12 35899999999999988887666889999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHH
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~ 296 (384)
|++.+.+++..++.++.+++ +.|+|+||||+++. ..+...
T Consensus 155 H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~ 194 (715)
T 2va8_A 155 HYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKW 194 (715)
T ss_dssp GGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHH
T ss_pred hhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHH
Confidence 99998889999999988886 89999999999863 444443
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=286.52 Aligned_cols=269 Identities=20% Similarity=0.207 Sum_probs=194.5
Q ss_pred CccCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 100 ~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+|++++ +++.+.+.+.+.||..|+|+|.++++.+..++++++++|||||||++|.+|++..+.. +++++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 578888 9999999999999999999999999999999999999999999999999999988743 56899
Q ss_pred EEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
|++|+++|+.|+++.++.+.. ++++...+|+...... ...+++|+|+||+++..++......++++++|||||+|+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 999999999999999965543 5778888887654332 123689999999999999888766688999999999999
Q ss_pred ccCCChHHHHHHHHHHC---CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccC----CeEEEEEEec---
Q 016712 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD----GISLYSIATS--- 326 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~----~i~~~~~~~~--- 326 (384)
+.+++++..+..++..+ .++.|+|+||||+++ ...+.. ++..+. +.... ...+... .....+....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDW-RPVPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCC-CSSCEEEEEECSSEEEEEETTEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCC-CCccceEEEeeCCeeeccCcchhh
Confidence 99988998888887766 578999999999986 344544 443221 21110 0000000 0000111100
Q ss_pred -cchhhHHHHHH------------HHhHhHHHHHHHHHhh------------------------------cceEEEecCC
Q 016712 327 -MNMQKVENALF------------SLKQNVMQTAWLMLWL------------------------------KVIIVSLCMG 363 (384)
Q Consensus 327 -~~~~k~~~l~~------------~~~~~~~~~~~~l~~~------------------------------~~~v~~~hg~ 363 (384)
........+.. ..++.++.++..+... +..+.++||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 00002222211 1224555555554432 2458899999
Q ss_pred CChhhhhchhhhhhcCCcccC
Q 016712 364 ISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 364 m~~~eR~~il~~F~~~~~~V~ 384 (384)
|+.++|+.+++.|++|+++|+
T Consensus 306 l~~~~R~~v~~~f~~g~~~vl 326 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVV 326 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEE
T ss_pred CCHHHHHHHHHHHHCCCCeEE
Confidence 999999999999999999874
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=272.33 Aligned_cols=170 Identities=21% Similarity=0.245 Sum_probs=145.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+|. |+|+|.++++.+..|+++++++|||+|||++|.++++..+. .+.++||++||++|++|+++.+.+.
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---------~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---------cCCeEEEECChHHHHHHHHHHHHHH
Confidence 4664 99999999999999999999999999999999999988773 3678999999999999999999998
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+. .+..++|+..... +++|+|+||++|.+++.++...+.++++|||||+|++.+++++..++.++..++.+
T Consensus 153 ~~--~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 153 FG--DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp HS--CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred hC--CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 75 6677788765432 47999999999999998887888999999999999999999999999999999999
Q ss_pred CcEEEEEccCChhHH--HHHHHhcCCCeEEE
Q 016712 277 RQSMMFSATMPPWIR--SLTNKYLKNPLTVD 305 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~--~~~~~~l~~~~~i~ 305 (384)
+|+|+||||+|+... .++......+..+.
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi 254 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIV 254 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEE
Confidence 999999999987532 33333445555544
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=278.75 Aligned_cols=251 Identities=18% Similarity=0.165 Sum_probs=192.7
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.+.+.+.+ .|| +|||+|.++++.+++|+|+++++|||+|||++|+++++..+ ..++++|||+||++||.
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---------~~~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------hcCCeEEEEechHHHHH
Confidence 34444544 588 59999999999999999999999999999999888888776 34788999999999999
Q ss_pred HHHHHHHHhC-CCCceEEEECCCCh---HHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC---
Q 016712 188 QVEKEFHESA-PSLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (384)
Q Consensus 188 q~~~~~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~--- 259 (384)
|+++.+++++ .++.+..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.++++++|||||||++..
T Consensus 136 Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 136 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp HHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSH
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccc
Confidence 9999999965 35688889999887 5566677766 99999999999888764 5578999999999976654
Q ss_pred --------CChHHH-HHHHHHHCC-----------CCCcEEEEEcc-CChhHHH-HHHHhcCCCeEEEecCCCcccccCC
Q 016712 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIRS-LTNKYLKNPLTVDLVGDSDQKLADG 317 (384)
Q Consensus 260 --------~~~~~~-~~~il~~l~-----------~~~q~l~~SAT-~~~~~~~-~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (384)
+||..+ +..+++.++ .+.|+++|||| .|..+.. +...++. +.+. .......+
T Consensus 214 ~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~ 287 (1104)
T 4ddu_A 214 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARN 287 (1104)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCC
T ss_pred cchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCC
Confidence 777777 888888877 78999999999 5655442 3333332 2221 22244566
Q ss_pred eEEEEEEeccchhhHHHHHH----------HHhHhHHHHHHHHHhhcceEE-EecCCCChhhhhchhhhhhcCCcccC
Q 016712 318 ISLYSIATSMNMQKVENALF----------SLKQNVMQTAWLMLWLKVIIV-SLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~----------~~~~~~~~~~~~l~~~~~~v~-~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+.++.+.. ..+...++. +..+.++.++..|...|+.+. .+||+ |++ +++|++|+++|+
T Consensus 288 i~~~~~~~~k-~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 288 ITHVRISSRS-KEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEEEEESCCC-HHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred ceeEEEecCH-HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 7777665532 222222221 223788899999999999998 99992 555 999999999885
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=273.04 Aligned_cols=157 Identities=22% Similarity=0.246 Sum_probs=140.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+| .|+++|.++|+.+++|+|+++++|||+|||++|++++...+. .+.++||++|+++|+.|+++.+++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 355 599999999999999999999999999999999999887652 3678999999999999999999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+.++.+..++|+.... ..++|+|+||++|.+.+......+.++++|||||+|++.+++|+..+..++..++++
T Consensus 106 ~~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 106 FDDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp C--CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred cCCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 8888888898887543 247999999999999998887778999999999999999999999999999999999
Q ss_pred CcEEEEEccCChhH
Q 016712 277 RQSMMFSATMPPWI 290 (384)
Q Consensus 277 ~q~l~~SAT~~~~~ 290 (384)
+|+|++|||+++..
T Consensus 179 v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 179 VKFILLSATVPNTY 192 (997)
T ss_dssp CEEEEEECCCTTHH
T ss_pred CCEEEEcCCCCChH
Confidence 99999999998654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=268.90 Aligned_cols=173 Identities=19% Similarity=0.196 Sum_probs=139.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
..+|..+||.+|+++|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHH
Confidence 3457778999999999999999999999999999999999999999998875421 122468999999999999999
Q ss_pred HHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCC-hHHHH
Q 016712 191 KEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVG-FAEDV 266 (384)
Q Consensus 191 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~-~~~~~ 266 (384)
+.++++++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.. +...+
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999986 6788888998876666666666799999999999999988776 78899999999999998765 22223
Q ss_pred HHHHHH-----CCCCCcEEEEEccCC
Q 016712 267 EVILER-----LPQNRQSMMFSATMP 287 (384)
Q Consensus 267 ~~il~~-----l~~~~q~l~~SAT~~ 287 (384)
...+.. .++..++++||||+.
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccc
Confidence 223332 246789999999997
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-30 Score=258.16 Aligned_cols=168 Identities=19% Similarity=0.207 Sum_probs=132.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++..+|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+++.++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3455799999999999999999999999999999999999998875421 122678999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCChHHHH-HHHHHH
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILER 272 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~~~~~-~~il~~ 272 (384)
++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+++....+ ..++..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 75 6788888898876666666667799999999999999988877 7899999999999999988754333 222222
Q ss_pred -C---CCCCcEEEEEccCCh
Q 016712 273 -L---PQNRQSMMFSATMPP 288 (384)
Q Consensus 273 -l---~~~~q~l~~SAT~~~ 288 (384)
+ .+..|+++||||++.
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp HHCC---CCEEEEEESCCCC
T ss_pred hhcccCCCCeEEEEeCCccc
Confidence 2 356899999999953
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=264.45 Aligned_cols=253 Identities=17% Similarity=0.134 Sum_probs=173.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 108 QDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
+.+.+.+...+| .||++|.++++.++.+ +|+++++|||||||++|++|++..+.. +.+++|++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeC
Confidence 344445567899 7999999999998876 699999999999999999999998743 678999999
Q ss_pred CHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHH---HHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 182 TRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM---RALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 182 t~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~---~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
|++|+.|+++.+.+++. ++++..++|+....+.. ..+..+ ++|+||||+.+.+ .+.+.++++|||||+|
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccc
Confidence 99999999999999875 57788888988766543 334444 9999999987743 5678999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
++.. .....+.....++++++||||++++...+......+...+...+... ..+..+.........-.+.+
T Consensus 501 r~g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r----~~i~~~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 501 RFGV-----KQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGR----KEVQTMLVPMDRVNEVYEFV 571 (780)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSC----CCCEECCCCSSTHHHHHHHH
T ss_pred hhhH-----HHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCC----cceEEEEeccchHHHHHHHH
Confidence 9532 22222233345789999999998877665542222233332111111 11221111111000001111
Q ss_pred HHH--------------------HhHhHHHHHHHHHh---hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LFS--------------------LKQNVMQTAWLMLW---LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~~--------------------~~~~~~~~~~~l~~---~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
... ....++.++..+.. .+..+..+||+|++++|++++++|++|+++|+
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~IL 643 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 643 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 100 01235566666666 37899999999999999999999999999985
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=249.26 Aligned_cols=164 Identities=20% Similarity=0.184 Sum_probs=136.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
+|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+++.++++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 699999999999999999999999999999999999998886521 12367899999999999999999999865
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCCh-HHHHHHHHHHC---
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGF-AEDVEVILERL--- 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l--- 273 (384)
++.+..++|+.........+..+++|+|+||++|.+.+..+.. .+.++++|||||||++.+.+. ...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 6788889999877666666666799999999999999988777 788999999999999988753 33333333332
Q ss_pred --CCCCcEEEEEccCCh
Q 016712 274 --PQNRQSMMFSATMPP 288 (384)
Q Consensus 274 --~~~~q~l~~SAT~~~ 288 (384)
.+..|+++||||++.
T Consensus 160 ~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CCSCCCEEEEEESCCCC
T ss_pred ccCCCCeEEEEecCccc
Confidence 246899999999965
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=260.42 Aligned_cols=168 Identities=19% Similarity=0.198 Sum_probs=133.9
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
-+|+..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999998886521 12367899999999999999999999
Q ss_pred hCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCChHHHH-HHHHH
Q 016712 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILE 271 (384)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~~~~~-~~il~ 271 (384)
+++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+....+ ..++.
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 876 7888899999877766677777899999999999999988777 7889999999999999887643332 23333
Q ss_pred HC----CCCCcEEEEEccCC
Q 016712 272 RL----PQNRQSMMFSATMP 287 (384)
Q Consensus 272 ~l----~~~~q~l~~SAT~~ 287 (384)
.. .+..|+++||||++
T Consensus 399 ~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCC
T ss_pred HhhccCCCCCeEEEEcCCcc
Confidence 21 45689999999985
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=273.62 Aligned_cols=247 Identities=16% Similarity=0.194 Sum_probs=187.3
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 110 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
+.+.+.+ +||. | ++|.++|+.++.|+|+++++|||||||+ |.+|++..+.. .++++|||+||++|+.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 3444554 7998 9 9999999999999999999999999998 88999887753 46789999999999999
Q ss_pred HHHHHHHhCC--CC----ceEEEECCCChHHH---HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 189 VEKEFHESAP--SL----DTICVYGGTPISHQ---MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 189 ~~~~~~~~~~--~~----~~~~~~g~~~~~~~---~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+++.+++++. ++ .+.+++|+.....+ ...+.. ++|+|+||++|.+++.. ++++++|||||||+|++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 9999999875 34 67788888877653 344455 99999999999987654 67999999999999998
Q ss_pred CChHHHHHHHHHHC-----------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc
Q 016712 260 VGFAEDVEVILERL-----------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328 (384)
Q Consensus 260 ~~~~~~~~~il~~l-----------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 328 (384)
++..+..++..+ +...|++++|||+++. ..+...++.++..+.+. .......++.++++....
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~~~~k- 263 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAVNDES- 263 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEESCCC-
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEechhH-
Confidence 567888888877 3578999999999987 54444444444444332 122334455555552211
Q ss_pred hhhHHHH----------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 329 MQKVENA----------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 329 ~~k~~~l----------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
......+ +++..+.++.++..|... +.+..+||+| ++++++|++|+++|+
T Consensus 264 ~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VL 323 (1054)
T 1gku_B 264 ISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHL 323 (1054)
T ss_dssp TTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEE
T ss_pred HHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEE
Confidence 1111111 223447788888888877 9999999998 588999999999874
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=270.38 Aligned_cols=180 Identities=20% Similarity=0.290 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
+..+..+++...+|..++|+|.++++.++. ++|+++++|||||||++|.+|+++.+.. ..+.++||++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHH
Confidence 445677777778899999999999999975 5689999999999999999999999875 34668999999999
Q ss_pred HHHHHHHHHHHhC-C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC--CCCCccEEEEeCcccccC
Q 016712 185 LAKQVEKEFHESA-P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 185 La~q~~~~~~~~~-~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~--~~~~l~~vViDEah~~~~ 259 (384)
||+|+++.+++.+ + ++.+..++|+..... + ...+++|+|+|||++..++.++.. .++++++||+||+|.+.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--K-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--H-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcch--h-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 9999999998753 3 456777777644322 2 223479999999999777765432 367899999999998877
Q ss_pred CChHHHHHHHHHH-------CCCCCcEEEEEccCChhHHHHHHHh
Q 016712 260 VGFAEDVEVILER-------LPQNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 260 ~~~~~~~~~il~~-------l~~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
. ++..++.++.+ +++++|+|+||||+++. .+++.+.
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL 1103 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWL 1103 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHh
Confidence 5 67766666554 46789999999999864 5555544
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-27 Score=231.55 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=134.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC--C
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~--~ 198 (384)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.+++ +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 5999999999999998 99999999999999999999887642 36679999999999999999999987 3
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
...+..++|+......... ..+++|+|+||+.+...+..+.+.+.++++|||||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 4478888888766544333 335899999999999999888888899999999999999876655555566666667899
Q ss_pred EEEEEccCChh
Q 016712 279 SMMFSATMPPW 289 (384)
Q Consensus 279 ~l~~SAT~~~~ 289 (384)
+++||||++..
T Consensus 159 ~l~lTaTp~~~ 169 (494)
T 1wp9_A 159 VIGLTASPGST 169 (494)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEecCCCCC
Confidence 99999999854
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=244.36 Aligned_cols=248 Identities=13% Similarity=0.030 Sum_probs=174.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh--
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-- 196 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~-- 196 (384)
...|+|+|.++++.++.++++++++|||+|||++|++++...+.. .++++|||+||++|+.|+++.++++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 347999999999999999999999999999999999998887743 2348999999999999999999988
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+++..+..++|+.....+ +..+.+|+|+||+.+.. .....++++++|||||+|++.. ..+..+++.+++.
T Consensus 183 ~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 444577778887665543 44568999999997643 2334577899999999999765 4567778888888
Q ss_pred CcEEEEEccCChhHHH-HHHHhcCCCeEEEecCCCc--ccccCCeEEEEEEecc------------c----------hhh
Q 016712 277 RQSMMFSATMPPWIRS-LTNKYLKNPLTVDLVGDSD--QKLADGISLYSIATSM------------N----------MQK 331 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~~-~~~~~l~~~~~i~~~~~~~--~~~~~~i~~~~~~~~~------------~----------~~k 331 (384)
.++++||||+++.... +....+.++..+.+..... ...........+.... . ..+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 9999999999776433 2222233444443322100 0001111111111100 0 011
Q ss_pred HHHHHHHH----------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSL----------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~----------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+...+ .+.+..++..|...+.++..+||+|+.++|++++++|++|+++|+
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vL 401 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIII 401 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEE
Confidence 11111111 144556777777777899999999999999999999999999874
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=257.02 Aligned_cols=165 Identities=21% Similarity=0.243 Sum_probs=129.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH-HHHHHHhCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAPS 199 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~-~~~~~~~~~~ 199 (384)
.|+|+|.++++.++.|+|+++++|||+|||++|++|++..+...... ..+.++|||+|+++|+.|+ .+.++++++.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH---TCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---CCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 69999999999999999999999999999999999999888653221 2346799999999999999 9999998865
Q ss_pred -CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHH------HccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHH
Q 016712 200 -LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI------KRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILE 271 (384)
Q Consensus 200 -~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l------~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~ 271 (384)
+.+..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...+ +...+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 8888999988776666666678999999999999888 4455678899999999999986543 2222222222
Q ss_pred H----C---------CCCCcEEEEEccCCh
Q 016712 272 R----L---------PQNRQSMMFSATMPP 288 (384)
Q Consensus 272 ~----l---------~~~~q~l~~SAT~~~ 288 (384)
. . .+..++++||||++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhhcccccccccccCCCCCEEEEecccccc
Confidence 1 1 156899999999986
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=257.87 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=131.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+... ....++++|||+||++|+.|+++.++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~----~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC----CSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999998876431 1122678999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCCh-HHHHHHHHHH
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGF-AEDVEVILER 272 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~-~~~~~~il~~ 272 (384)
++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++...+. ...+..++..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 75 6888889998876665556666799999999999999988776 788999999999999988753 3333333332
Q ss_pred C----CCCCcEEEEEccCC
Q 016712 273 L----PQNRQSMMFSATMP 287 (384)
Q Consensus 273 l----~~~~q~l~~SAT~~ 287 (384)
. .+..|+++||||++
T Consensus 400 ~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHTTCSCCCEEEEEESCCC
T ss_pred hhccCCCcCeEEEecCCcc
Confidence 1 45689999999985
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=265.71 Aligned_cols=173 Identities=19% Similarity=0.256 Sum_probs=136.5
Q ss_pred CCCCCcHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc--CCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~--~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
||++++++|.++++.++ .++|++++||||||||++|.+|+++.+....... ....+.++|||+|+++||+|+++.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999877 5789999999999999999999999997643221 12357799999999999999999998
Q ss_pred HhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC--CCCCCccEEEEeCcccccCCChHHHHHHHH
Q 016712 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (384)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~l~~vViDEah~~~~~~~~~~~~~il 270 (384)
+.+. ++.+..++|+...... ...+++|+|+|||++..++.... ..++++++|||||+|.+.+ .+|..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8664 5667778888765432 12358999999999865554432 2368899999999997766 4888777766
Q ss_pred HH-------CCCCCcEEEEEccCChhHHHHHH
Q 016712 271 ER-------LPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 271 ~~-------l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.+ +++++|+|++|||+|+. .+++.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~ 262 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-EDVAT 262 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HHHHH
Confidence 54 46789999999999863 44544
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=235.61 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=134.3
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.+|| .|||+|..+++.++.|+ |..++||+|||++|.+|++...+ .+++++||+||++||.|..+.+..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 4699 89999999999999998 99999999999999999985432 366899999999999999999888
Q ss_pred hCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc-CCC----
Q 016712 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SVG---- 261 (384)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~-~~~---- 261 (384)
++. ++.+.+++||.+... +....++||+||||++| .+++..+ ...++.+.++||||||.|+ +.+
T Consensus 147 l~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 653 688889999987543 34445799999999999 6766543 3567899999999999998 653
Q ss_pred -----------hHHHHHHHHHHCC---------CCCcEE-----------------EEEccCChh
Q 016712 262 -----------FAEDVEVILERLP---------QNRQSM-----------------MFSATMPPW 289 (384)
Q Consensus 262 -----------~~~~~~~il~~l~---------~~~q~l-----------------~~SAT~~~~ 289 (384)
|...+..++..++ +.+|++ +||||.+..
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~ 289 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVAL 289 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHH
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchh
Confidence 7889999999997 468887 899998753
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-26 Score=234.81 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=110.6
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|+|+|..+++.++.|+ |..++||+|||++|.+|++.... .+++++||+||++||.|+++.+..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 475 79999999999999998 99999999999999999986542 3678999999999999999998887
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc-CC------
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML-SV------ 260 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~-~~------ 260 (384)
+. ++.+.+++||.+.. .+.+..++||+||||++| .+++..+. ..+++++++||||+|+|+ +.
T Consensus 139 ~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 54 67888899998754 344555799999999999 78887553 567899999999999998 54
Q ss_pred ---------ChHHHHHHHHHHCCC
Q 016712 261 ---------GFAEDVEVILERLPQ 275 (384)
Q Consensus 261 ---------~~~~~~~~il~~l~~ 275 (384)
+|...+..++..+++
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EEEC--------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchh
Confidence 367788888888864
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=226.76 Aligned_cols=161 Identities=18% Similarity=0.274 Sum_probs=135.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+ .||++|..+++.++.|+ |..++||+|||++|.+|++...+ .+.+++||+||++||.|..+.+..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---------~g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---------AGNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------TTSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---------hCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 598 89999999999999998 99999999999999999975543 3567999999999999999998886
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc-CC------
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SV------ 260 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~-~~------ 260 (384)
+. ++.+.+++||.+... +....++||+||||++| .+++..+ ...++.+.++||||+|.|+ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 54 688888999877543 34445699999999999 7887654 3567899999999999998 42
Q ss_pred ---------ChHHHHHHHHHHCC---------CCCcEE-----------------EEEccCChhHH
Q 016712 261 ---------GFAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIR 291 (384)
Q Consensus 261 ---------~~~~~~~~il~~l~---------~~~q~l-----------------~~SAT~~~~~~ 291 (384)
+|...+..++..++ ++.|++ ++|||.+....
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~ 319 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVS 319 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHH
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHH
Confidence 48899999999998 688998 99999886433
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=199.14 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=120.8
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH-HHHHHHHh
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-VEKEFHES 196 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q-~~~~~~~~ 196 (384)
+...|+++|.++++.+++++++++++|||+|||++|+++++..+...... ..+.++||++|+++|+.| +.+.+..+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 44579999999999999999999999999999999999998877543211 236789999999999999 77778876
Q ss_pred CC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC------CCCCCccEEEEeCcccccCCChHHHH-HH
Q 016712 197 AP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEADQMLSVGFAEDV-EV 268 (384)
Q Consensus 197 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~------~~~~~l~~vViDEah~~~~~~~~~~~-~~ 268 (384)
.. ++.+..++|+.........+..+++|+|+||+++...+.... ..+.++++|||||||++.+.++...+ ..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred hccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 567777777766555444455568999999999999887643 56788999999999999876654443 33
Q ss_pred HHHHC-------------CCCCcEEEEEcc
Q 016712 269 ILERL-------------PQNRQSMMFSAT 285 (384)
Q Consensus 269 il~~l-------------~~~~q~l~~SAT 285 (384)
++... .++.++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 33221 157899999998
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=214.56 Aligned_cols=136 Identities=18% Similarity=0.102 Sum_probs=113.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+++.++ ++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 6999999999999999999999999999999998887653 467999999999999999999994 56
Q ss_pred c-eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcE
Q 016712 201 D-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (384)
Q Consensus 201 ~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~ 279 (384)
. +.+++|+... ..+|+|+||+.+...+..- .+++++|||||+|++.+.+|.. +++.+ +..++
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~ 221 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFR 221 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEE
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeE
Confidence 7 7777776532 4799999999987766421 2468999999999999887754 44444 46889
Q ss_pred EEEEccCC
Q 016712 280 MMFSATMP 287 (384)
Q Consensus 280 l~~SAT~~ 287 (384)
+++|||++
T Consensus 222 l~lSATp~ 229 (472)
T 2fwr_A 222 LGLTATFE 229 (472)
T ss_dssp EEEESCCC
T ss_pred EEEecCcc
Confidence 99999997
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-27 Score=242.62 Aligned_cols=254 Identities=15% Similarity=0.050 Sum_probs=172.5
Q ss_pred CccC-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.|.. +++++.+.+++... ...++|+|+.+++.+++|+|+++++|||||||++|++|++..+.. .++++||
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLv 220 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLI 220 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEE
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEE
Confidence 3444 55676666666543 477899998889999999999999999999999999999998864 3678999
Q ss_pred EecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
|+||++||.|+++.++. ..+. +.+.. .. .....+..+.+.|.+.+.+.+... ..++++++|||||||++
T Consensus 221 l~PtreLa~Qi~~~l~~----~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 221 LAPTRVVAAEMEEALRG----LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp EESSHHHHHHHHHHTTT----SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-
T ss_pred EcChHHHHHHHHHHhcC----Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-
Confidence 99999999999988863 3333 22211 00 001123467778888777666544 45889999999999998
Q ss_pred CCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHH
Q 016712 259 SVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALF 337 (384)
Q Consensus 259 ~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (384)
+.+|...+..++..++ +++|+++||||+++.+..+.. .++..+.+...........+... .. ...+...+++
T Consensus 290 ~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ll~~---l~-~~~~~~LVF~ 362 (618)
T 2whx_A 290 DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIPERSWNTGFDW---IT-DYQGKTVWFV 362 (618)
T ss_dssp SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCCSSCCSSSCHH---HH-HCCSCEEEEC
T ss_pred CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCCHHHHHHHHHH---HH-hCCCCEEEEE
Confidence 6668888888888775 689999999999987553322 24444443221100000000000 00 0011112244
Q ss_pred HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 338 SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+..+.++.++..|...+..+..+||+ +|++++++|++|+++|+
T Consensus 363 ~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VL 405 (618)
T 2whx_A 363 PSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFV 405 (618)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEE
T ss_pred CChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEE
Confidence 56688899999999999999999984 79999999999999874
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-26 Score=225.51 Aligned_cols=236 Identities=15% Similarity=0.037 Sum_probs=160.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 118 GISKLFPIQKAVLEPAMQGRDM-IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~-li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
|+..++|+|+ +||.+++++++ ++++|||||||++|++|++..+.. .++++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~-- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALR-- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhc--
Confidence 6788999986 79999999887 999999999999999999987654 36789999999999999999885
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH-CCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-LPQ 275 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~-l~~ 275 (384)
++.+....+.... ....+..|.++|++.+.+.+... ..++++++|||||+|++ +.++......+... .++
T Consensus 70 --g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp --TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred --Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 3333221111111 11234679999999998877644 56889999999999987 44344433333332 356
Q ss_pred CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcc
Q 016712 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKV 355 (384)
Q Consensus 276 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~ 355 (384)
++|+++||||+|+.+..+ +..++..+................ ... .......++++..+.++.++..|...|+
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~---~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~g~ 213 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIPERSWNTGFD---WIT-DYQGKTVWFVPSIKAGNDIANCLRKSGK 213 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCCSSCCSSSCH---HHH-HCCSCEEEECSSHHHHHHHHHHHHTTTC
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCccCCchhhHHHHH---HHH-hCCCCEEEEcCCHHHHHHHHHHHHHcCC
Confidence 899999999998864432 233444444321110000000000 000 0001112234456788899999999999
Q ss_pred eEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 356 IIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 356 ~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+..+||++. ++++++|++|+++|+
T Consensus 214 ~~~~lh~~~~----~~~~~~f~~g~~~vL 238 (451)
T 2jlq_A 214 RVIQLSRKTF----DTEYPKTKLTDWDFV 238 (451)
T ss_dssp CEEEECTTTH----HHHGGGGGSSCCSEE
T ss_pred eEEECCHHHH----HHHHHhhccCCceEE
Confidence 9999999754 679999999999874
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=220.52 Aligned_cols=266 Identities=15% Similarity=0.120 Sum_probs=179.1
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
...|+++++++.+.+.+...| ..|++.|+++|+.++. +++++++||||+|||+ ++|++..... .. ...+.++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~~--~~~g~~i 143 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--MP--HLENTQV 143 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--CG--GGGTCEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--cc--cCCCceE
Confidence 356899999999999999988 6799999999988775 4679999999999999 5666622211 11 1126689
Q ss_pred EEEecCHHHHHHHHHHHHHhCCCCceEEEECCC-ChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGT-PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
+|++|+++|+.|+++.+.+... ..+....|.. .... ....+.+|+|+|||++.+.+... ..+.++++|||||+|
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred EecCchHHHHHHHHHHHHHHhC-Cchhheecceecccc---ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 9999999999999988876542 2211111110 0000 01235799999999998877654 458899999999999
Q ss_pred c-ccCCCh-HHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh--
Q 016712 256 Q-MLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK-- 331 (384)
Q Consensus 256 ~-~~~~~~-~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k-- 331 (384)
. .++..+ ...+..+... .++.|+++||||++.. .+ ..++.+...+.+.+.. ..+.+++......+..
T Consensus 219 ~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~ 289 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDS 289 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHH
T ss_pred ccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HH-HHHhcCCCcccccCcc-----cceEEEEecCCchhHHHH
Confidence 5 555332 2334444443 3579999999999753 33 4556655556554321 2344444333222111
Q ss_pred -HHHHHH--------------HHhHhHHHHHHHHHh-----------hcceEEEecCCCChhhhhchhhhhh-----cCC
Q 016712 332 -VENALF--------------SLKQNVMQTAWLMLW-----------LKVIIVSLCMGISHKARGRGPFQLS-----EMD 380 (384)
Q Consensus 332 -~~~l~~--------------~~~~~~~~~~~~l~~-----------~~~~v~~~hg~m~~~eR~~il~~F~-----~~~ 380 (384)
...++. +..+.++.++..|.. .++.+..+||+|+.++|+++++.|+ +|+
T Consensus 290 ~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~ 369 (773)
T 2xau_A 290 AIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG 369 (773)
T ss_dssp HHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc
Confidence 111111 112566677776664 4788999999999999999999999 898
Q ss_pred cccC
Q 016712 381 VSIY 384 (384)
Q Consensus 381 ~~V~ 384 (384)
.+|+
T Consensus 370 ~kVl 373 (773)
T 2xau_A 370 RKVV 373 (773)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8764
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-27 Score=245.85 Aligned_cols=242 Identities=14% Similarity=0.084 Sum_probs=152.9
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 113 ALARRGIS-----KLFPIQK-----AVLEPAM------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 113 ~l~~~g~~-----~~~~~Q~-----~~i~~i~------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
+|..+||. .||++|+ ++|+.++ +|+|+++++|||||||++|++|++..+.. .++++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~ 273 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRT 273 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcE
Confidence 34455666 8999999 9999888 89999999999999999999999988754 36789
Q ss_pred EEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
||++||++||.|+++.++.+. +....+.... .-..+.-+-+.+.+.+.+.+... ..++++++|||||+|+
T Consensus 274 lilaPTr~La~Q~~~~l~~~~----i~~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGLP----VRYLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTSC----CEECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EEEccHHHHHHHHHHHHhcCC----eeeecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 999999999999999887653 2111110000 00001123333444444444433 5689999999999999
Q ss_pred ccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 257 MLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
+ +..+...+..+...++ .++|+++||||+++.+..+... ..++ +.+...........+ +.... ...+...+
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i-~~v~~~~~~~~~~~~---l~~l~-~~~~~~lV 415 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV-HDVSSEIPDRAWSSG---FEWIT-DYAGKTVW 415 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE-EEEECCCCSSCCSSC---CHHHH-SCCSCEEE
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce-EEEeeecCHHHHHHH---HHHHH-hCCCCEEE
Confidence 7 2223334444444443 6899999999999875433221 1222 111111000000000 00000 00111122
Q ss_pred HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.++.++..|...++.+..+|| ++|++++++|++|+++|+
T Consensus 416 F~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VL 460 (673)
T 2wv9_A 416 FVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFV 460 (673)
T ss_dssp ECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEE
T ss_pred EECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEE
Confidence 444567888899999999999999999 489999999999999875
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-25 Score=224.63 Aligned_cols=217 Identities=13% Similarity=0.088 Sum_probs=153.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.++++|.++++.+..++++++++|||||||++|.+|+++ .+.++||++||++||.|+++.+.+.+ +.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~-g~ 283 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAH-GI 283 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHH-SC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHh-CC
Confidence 355667666666778889999999999999999988775 25689999999999999999887765 34
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc--
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-- 278 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q-- 278 (384)
.+....|+.. ...+++|+|+||++| +....+.++++++|||||+| +++.+|...+..+++.++...|
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 5566666643 345689999999997 45667788899999999996 5666788889999999987776
Q ss_pred EEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEE
Q 016712 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIV 358 (384)
Q Consensus 279 ~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~ 358 (384)
+++||||+++.+. ...+....+.-...... ..... .........+...++++.++.++.++..|...++.+.
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~~~~~i-~~~~~-~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~ 424 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALSNTGEI-PFYGK-AIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAV 424 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECBSCSSE-EETTE-EECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCcccc------cCCcceEEEeecccchh-HHHHh-hhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEE
Confidence 7888999998522 12222221110000000 00000 0001111112223355677889999999999999999
Q ss_pred EecCCCChhhh
Q 016712 359 SLCMGISHKAR 369 (384)
Q Consensus 359 ~~hg~m~~~eR 369 (384)
.+||+|++++|
T Consensus 425 ~lHG~l~q~er 435 (666)
T 3o8b_A 425 AYYRGLDVSVI 435 (666)
T ss_dssp EECTTSCGGGS
T ss_pred EecCCCCHHHH
Confidence 99999998864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-24 Score=191.62 Aligned_cols=181 Identities=19% Similarity=0.219 Sum_probs=130.7
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
++.+.+.+...+...++++|.++++.+..|++++++||||||||..+.++++....... ...+.+++++.|+++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISA 122 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHH
Confidence 34444444444444589999999999999999999999999999999888888765421 12355899999999999
Q ss_pred HHHHHHHHHhCC-CC--ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc-cCCCh
Q 016712 187 KQVEKEFHESAP-SL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGF 262 (384)
Q Consensus 187 ~q~~~~~~~~~~-~~--~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~-~~~~~ 262 (384)
.|+.+.+..... .+ .+........ .....+++|+|+||+++.+.+.. .++++++|||||+|++ ++.+|
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHH
T ss_pred HHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHH
Confidence 999999887553 22 2221111100 00113478999999999999876 4889999999999986 66666
Q ss_pred H-HHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCe
Q 016712 263 A-EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302 (384)
Q Consensus 263 ~-~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 302 (384)
. ..+..++... ++.|+++||||++... +...+...|+
T Consensus 195 ~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 195 LLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 6 4566666665 5799999999999875 4444444443
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-25 Score=221.94 Aligned_cols=214 Identities=17% Similarity=0.132 Sum_probs=133.0
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCCh
Q 016712 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~ 211 (384)
.+++|+|+++++|||||||++|++|++..+.. .+++++|++||++||.|+++.++.+ .+.. .++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~-~~~--- 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL----DVKF-HTQ--- 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS----CEEE-ESS---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC----CeEE-ecc---
Confidence 35688999999999999999999999987754 3678999999999999999988754 3322 111
Q ss_pred HHHHHHHhcCCCE-EEECchhHHHHHH--------ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEE
Q 016712 212 SHQMRALDYGVDA-VVGTPGRVIDLIK--------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMM 281 (384)
Q Consensus 212 ~~~~~~~~~~~~I-lV~Tp~~l~~~l~--------~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~ 281 (384)
.+ .|+||+++.+.+. .....++++++|||||+|++ +.++...+..+...+ +.+.|+++
T Consensus 68 -----------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 68 -----------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -----------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -----------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 11 3777766543222 23345889999999999998 443444444443333 36799999
Q ss_pred EEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEec
Q 016712 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLC 361 (384)
Q Consensus 282 ~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~h 361 (384)
||||+++.+..+... ..++...............+. ... ...+...++++..+.++.++..|...+..+..+|
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lh 208 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQTDIPSEPWNTGHD----WIL-ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLN 208 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEECCCCSSCCSSSCH----HHH-HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECC
T ss_pred EeCCCCchhhhhhhc--CCCeeEeeeccChHHHHHHHH----HHH-hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEec
Confidence 999998875543332 122221111000000000000 000 0001112234455778888899998999999999
Q ss_pred CCCChhhhhchhhhhhcCCcccC
Q 016712 362 MGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 362 g~m~~~eR~~il~~F~~~~~~V~ 384 (384)
| ++|++++++|++|+++|+
T Consensus 209 g----~~R~~~~~~F~~g~~~vL 227 (440)
T 1yks_A 209 R----KTFEREYPTIKQKKPDFI 227 (440)
T ss_dssp S----SSCC--------CCCSEE
T ss_pred c----hhHHHHHhhhcCCCceEE
Confidence 9 579999999999999874
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-23 Score=202.92 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=143.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+|+++++++|||||||++|++|+++.+.. .+++++|++||++|+.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc---
Confidence 47899999999999999999999976654 36789999999999999998876 4555544443211
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCChhHHHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~ 293 (384)
.-..+.-+.+.|.+.+.+.+.. ...++++++|||||+|++ +.++......+.... +.++|+++||||+++.+..+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred --cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1112356778888888777766 566899999999999997 433444444444432 56899999999999864432
Q ss_pred HHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchh
Q 016712 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGP 373 (384)
Q Consensus 294 ~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il 373 (384)
... +.++ +.+...........+.. ..... .....++++.++.++.++..|...+.++..+||+ +|++++
T Consensus 142 ~~~--~~~i-~~~~~~~~~~~~~~~~~---~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~ 210 (431)
T 2v6i_A 142 PPS--NSPI-IDEETRIPDKAWNSGYE---WITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEY 210 (431)
T ss_dssp CCC--SSCC-EEEECCCCSSCCSSCCH---HHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHT
T ss_pred cCC--CCce-eeccccCCHHHHHHHHH---HHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHH
Confidence 211 1222 11110000000000000 00000 0111223445677888888898889999999997 688999
Q ss_pred hhhhcCCcccC
Q 016712 374 FQLSEMDVSIY 384 (384)
Q Consensus 374 ~~F~~~~~~V~ 384 (384)
++|++|+++|+
T Consensus 211 ~~f~~g~~~vL 221 (431)
T 2v6i_A 211 PKCKSEKWDFV 221 (431)
T ss_dssp THHHHSCCSEE
T ss_pred HhhcCCCCeEE
Confidence 99999999874
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-24 Score=217.26 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=152.9
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
.++|++++++||||||||+ +++..+.. .+.++|++||++||.|+++.+++. ++.+..++|+....
T Consensus 152 ~l~rk~vlv~apTGSGKT~----~al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~i 216 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTY----HAIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVT 216 (677)
T ss_dssp TSCCEEEEEECCTTSSHHH----HHHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEEC
T ss_pred hcCCCEEEEEcCCCCCHHH----HHHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEE
Confidence 4578899999999999998 34444433 234699999999999999999987 46777788875431
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHH
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIR 291 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~ 291 (384)
. ..-....+++++|++.+. ....+++|||||+|++.+.+|+..+..++..++ .+.+++++|||. +.+.
T Consensus 217 v--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~ 285 (677)
T 3rc3_A 217 V--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVM 285 (677)
T ss_dssp C--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHH
T ss_pred e--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHH
Confidence 0 000012577788775442 246789999999999999999999999999988 688999999995 3344
Q ss_pred HHHHHhcCCCeEEEec-CCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhh
Q 016712 292 SLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARG 370 (384)
Q Consensus 292 ~~~~~~l~~~~~i~~~-~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~ 370 (384)
.+.... ...+.+... ........... +.......+...++++..+.++.++..|...+..+..+||+|++++|+
T Consensus 286 ~l~~~~-~~~~~v~~~~r~~~l~~~~~~----l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~ 360 (677)
T 3rc3_A 286 ELMYTT-GEEVEVRDYKRLTPISVLDHA----LESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKL 360 (677)
T ss_dssp HHHHHH-TCCEEEEECCCSSCEEECSSC----CCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred HHHHhc-CCceEEEEeeecchHHHHHHH----HHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHH
Confidence 444433 344444321 00000000000 000000112223445556778899999999999999999999999999
Q ss_pred chhhhhhc--CCcccC
Q 016712 371 RGPFQLSE--MDVSIY 384 (384)
Q Consensus 371 ~il~~F~~--~~~~V~ 384 (384)
++++.|++ |+++|+
T Consensus 361 ~~~~~F~~~~g~~~VL 376 (677)
T 3rc3_A 361 AQAKKFNDPNDPCKIL 376 (677)
T ss_dssp HHHHHHHCTTSSCCEE
T ss_pred HHHHHHHccCCCeEEE
Confidence 99999999 888874
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-23 Score=209.60 Aligned_cols=166 Identities=19% Similarity=0.140 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEccCCCchhHHHHHHHHHHHHhhh-hccCCCCCCEEEEEecCHHHHHHHH-HHH
Q 016712 121 KLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFN-EKHGRGRNPLCLVLAPTRELAKQVE-KEF 193 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~-~~~~~~~~~~~lvl~Pt~~La~q~~-~~~ 193 (384)
.|+|+|.++++.+++ | ++++++++||+|||++++.. +..+.... .......++++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 56899999999999997544 44443321 0111125788999999999999999 777
Q ss_pred HHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH----ccCCCCCCccEEEEeCcccccCCChHHHHHHH
Q 016712 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (384)
Q Consensus 194 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~----~~~~~~~~l~~vViDEah~~~~~~~~~~~~~i 269 (384)
+.+.. .+..+.++ ....+.+|+|+||++|..... ...+...++++|||||||++...+ ...+..+
T Consensus 257 ~~~~~--~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~i 325 (590)
T 3h1t_A 257 TPFGD--ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREI 325 (590)
T ss_dssp TTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHH
T ss_pred Hhcch--hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHH
Confidence 77653 22233322 123457999999999988764 234456789999999999987642 3456777
Q ss_pred HHHCCCCCcEEEEEccCChhHHHHHHHhcC
Q 016712 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLK 299 (384)
Q Consensus 270 l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~ 299 (384)
++.++ +.++++||||+..........++.
T Consensus 326 l~~~~-~~~~l~lTATP~~~~~~~~~~~f~ 354 (590)
T 3h1t_A 326 LEYFE-PAFQIGMTATPLREDNRDTYRYFG 354 (590)
T ss_dssp HHHST-TSEEEEEESSCSCTTTHHHHHHSC
T ss_pred HHhCC-cceEEEeccccccccchhHHHHcC
Confidence 77775 578999999987544333333333
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=191.54 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=122.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
+|+++|.++++.++.+++.++++|||+|||++++.++...+.. .+.++|||+||++|+.|+.+.+++++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 7999999999999988899999999999999998887776543 234899999999999999999999864
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
...+..++++..... ....+.+|+|+||+.+... ....+.++++|||||||++.+ ..+..++..+....+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 345666667654432 2223589999999877443 223467899999999999864 467788888878999
Q ss_pred EEEEEccCChhHHH
Q 016712 279 SMMFSATMPPWIRS 292 (384)
Q Consensus 279 ~l~~SAT~~~~~~~ 292 (384)
++++|||+++....
T Consensus 255 ~l~lSATp~~~~~~ 268 (282)
T 1rif_A 255 KFGLSGSLRDGKAN 268 (282)
T ss_dssp EEEECSSCCTTSTT
T ss_pred EEEEeCCCCCcchH
Confidence 99999999876433
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-23 Score=206.50 Aligned_cols=220 Identities=13% Similarity=0.059 Sum_probs=142.0
Q ss_pred HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCC
Q 016712 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210 (384)
Q Consensus 131 ~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~ 210 (384)
..+.+++++++++|||||||++|++|++..+.. .++++||++||++|+.|+++.++. +.+....+...
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~~~~~ 83 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRG----LPVRYQTSAVQ 83 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTT----SCEEECC----
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcC----ceEeEEecccc
Confidence 345678899999999999999999999988754 367899999999999999998873 33322111111
Q ss_pred hHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc-----cCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-----LSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 211 ~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~-----~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
. .-..+..+.++|.+.+...+... ..++++++|||||||++ +..+|.... . ..++.|+++||||
T Consensus 84 ~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il~SAT 152 (459)
T 2z83_A 84 R-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIFMTAT 152 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEEECSS
T ss_pred c-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEEEEcC
Confidence 0 01223467788888887766544 56889999999999984 332222211 1 1368999999999
Q ss_pred CChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCC
Q 016712 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGIS 365 (384)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~ 365 (384)
++..+..+... ..|+.+.............+ ..... ..+...++++..+.++.++..|...++.+..+||+
T Consensus 153 ~~~~~~~~~~~--~~pi~~~~~~~~~~~~~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~-- 223 (459)
T 2z83_A 153 PPGTTDPFPDS--NAPIHDLQDEIPDRAWSSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK-- 223 (459)
T ss_dssp CTTCCCSSCCC--SSCEEEEECCCCSSCCSSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred CCcchhhhccC--CCCeEEecccCCcchhHHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH--
Confidence 99775433221 23443311100000000000 00000 00111223445678889999999999999999994
Q ss_pred hhhhhchhhhhhcCCcccC
Q 016712 366 HKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 366 ~~eR~~il~~F~~~~~~V~ 384 (384)
+|++++++|++|+++|+
T Consensus 224 --~R~~~~~~f~~g~~~iL 240 (459)
T 2z83_A 224 --SYDTEYPKCKNGDWDFV 240 (459)
T ss_dssp --CCCCCGGGSSSCCCSEE
T ss_pred --HHHHHHhhccCCCceEE
Confidence 89999999999999874
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=167.49 Aligned_cols=139 Identities=17% Similarity=0.074 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
..++++|.++++.+++++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 36999999999999999999999999999999987776532 467999999999999999999994 4
Q ss_pred Cc-eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 200 ~~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
.. +..+.|+... ..+|+|+|++.+......- ..++++|||||+|++.+..+. .++..++ ..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCE
Confidence 66 6666665432 4799999999987665421 246899999999999887654 3455554 678
Q ss_pred EEEEEccCChh
Q 016712 279 SMMFSATMPPW 289 (384)
Q Consensus 279 ~l~~SAT~~~~ 289 (384)
++++|||+++.
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999998764
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=182.33 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=110.5
Q ss_pred CCcHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+|+|.++++.+ ..+++.+++.+||+|||+.++.. +..+... ....++|||+|+ .|+.||.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~-i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH-HHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 6999999999876 46789999999999999987544 4443321 234679999994 6899999999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
++++.+.+++|+... ....+.+|+|+|++.+..... +...++++||+||||++.+.+. .....+..++ .
T Consensus 109 ~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 109 APHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp CTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred CCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 988888777766532 112347999999998865433 2234689999999999876542 3344555564 4
Q ss_pred CcEEEEEccCCh
Q 016712 277 RQSMMFSATMPP 288 (384)
Q Consensus 277 ~q~l~~SAT~~~ 288 (384)
...+++||||..
T Consensus 178 ~~~l~LTaTP~~ 189 (500)
T 1z63_A 178 KYRIALTGTPIE 189 (500)
T ss_dssp EEEEEECSSCST
T ss_pred CcEEEEecCCCC
Confidence 678999999854
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=196.08 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=117.2
Q ss_pred CCcHHHHHHHHHHhC--------------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 121 KLFPIQKAVLEPAMQ--------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~--------------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. .....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 499999999998865 368999999999999997 666654421 12346899999999999
Q ss_pred HHHHHHHHHhCCCCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccC--CCCCCccEEEEeCcccccCCChH
Q 016712 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 187 ~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~--~~~~~l~~vViDEah~~~~~~~~ 263 (384)
.|+.+.|..+.++ .+.++.+.......+. .+.+|+|+||++|...+.... ..++...+||+||||++.. +
T Consensus 344 ~Q~~~~f~~f~~~----~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPD----SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---G 416 (1038)
T ss_dssp HHHHHHHHTTSTT----CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---H
T ss_pred HHHHHHHHHhccc----ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---h
Confidence 9999999998753 1234445555555564 468999999999998876532 2355788999999999653 3
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 264 EDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
..+..+.+.++ +.++++|||||...
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCCS
T ss_pred HHHHHHHHhCC-cccEEEEeCCcccc
Confidence 34566777775 58999999999753
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=195.54 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=108.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.|+|+|.+++..++.. .++|++++||+|||++++..+...+.. +...++|||+|+ .|+.||.+++.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 6899999999988764 589999999999999997777665533 334579999999 99999999998877
Q ss_pred CCceEEEECCCChHHHHH--HHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEEEeCcccccCCChH-HHHHHHHHHC-
Q 016712 199 SLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFA-EDVEVILERL- 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~--~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vViDEah~~~~~~~~-~~~~~il~~l- 273 (384)
++++.++.++........ ......+|+|+|++.+...... ..+...++++|||||||++...+.. ......+..+
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 577666654322111110 1112469999999877532111 1123457899999999999754321 1112222222
Q ss_pred CCCCcEEEEEccCCh
Q 016712 274 PQNRQSMMFSATMPP 288 (384)
Q Consensus 274 ~~~~q~l~~SAT~~~ 288 (384)
.....++++||||.+
T Consensus 304 ~~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQ 318 (968)
T ss_dssp TTCSSEEESCSSCSS
T ss_pred hcCCcEEEEEcCCcc
Confidence 245679999999853
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-19 Score=182.41 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=109.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
+|+ +||++|..+++.+++|+ |..+.||+|||++|.+|++...+ .|.+++|++||++||.|+++.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---------~G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---------TGKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------TCSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 599 89999999999999998 99999999999999999975542 3668999999999999999999887
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCC---CccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLS---EVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~---~l~~vViDEah~~~ 258 (384)
+. ++.+.+++||.+.. .+....++||+||||++| .+++..+. +.++ +++++||||+|.|+
T Consensus 144 ~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 54 67788888987743 344455799999999999 88887663 4577 89999999999887
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-17 Score=169.77 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=112.7
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++|+|.+++..+. .+++.|++.++|.|||+.++..+...+... .....+|||+| ..|+.|+.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 69999999998665 789999999999999998755554433221 22455899999 77899999999999
Q ss_pred CCCCceEEEECCCChHHHHHHH------------hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH
Q 016712 197 APSLDTICVYGGTPISHQMRAL------------DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~------------~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~ 264 (384)
++++.+.+++|+.......... ....+|+|+|++.+...... +...++++|||||||++-+.+ .
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s 384 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--S 384 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--S
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--h
Confidence 9999988888876555443332 12478999999998664322 112367899999999985432 2
Q ss_pred HHHHHHHHCCCCCcEEEEEccCC
Q 016712 265 DVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 265 ~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
.....+..+. ....+++||||.
T Consensus 385 ~~~~~l~~l~-~~~rl~LTgTPi 406 (800)
T 3mwy_W 385 SLYESLNSFK-VANRMLITGTPL 406 (800)
T ss_dssp HHHHHHTTSE-EEEEEEECSCCC
T ss_pred HHHHHHHHhh-hccEEEeeCCcC
Confidence 3344445553 455788999983
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-15 Score=152.66 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=108.0
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
.++|||.+++..+. .+...|+..+||.|||+.++..+...+..... ......++|||+|+ .|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHHH
Confidence 69999999998863 45678999999999999876665544322111 11123469999996 88999999
Q ss_pred HHHHhCCC-CceEEEECCCChHH--HHHHHhc------CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh
Q 016712 192 EFHESAPS-LDTICVYGGTPISH--QMRALDY------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (384)
Q Consensus 192 ~~~~~~~~-~~~~~~~g~~~~~~--~~~~~~~------~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~ 262 (384)
++.++.+. +.+..++++..... ....+.. ..+|+|+|++.+.... ..+...++++||+||+|++-+...
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChhh
Confidence 99998753 55666666543221 1112211 3789999999886543 233345789999999999876532
Q ss_pred HHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 263 AEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 263 ~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.....+..+. ....+++||||..
T Consensus 210 --~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 210 --QTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp --HHHHHHHHHC-CSEEEEECSSCSG
T ss_pred --HHHHHHHhcc-cCcEEEEecCccc
Confidence 2233344443 4578999999843
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-16 Score=155.98 Aligned_cols=129 Identities=18% Similarity=0.122 Sum_probs=99.0
Q ss_pred CCCCCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
|| .++|+|.+++.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 45 599999997765 4578999999999999999999999872 578999999999999999999
Q ss_pred HHhCC--CCceEEEECCCCh---------------------------------HHHH------------------HHHhc
Q 016712 194 HESAP--SLDTICVYGGTPI---------------------------------SHQM------------------RALDY 220 (384)
Q Consensus 194 ~~~~~--~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~ 220 (384)
..+.. ++++.++.|.... .... +....
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 88754 4556655552110 1111 22334
Q ss_pred CCCEEEECchhHHHHHHccCCCC-CCccEEEEeCcccccC
Q 016712 221 GVDAVVGTPGRVIDLIKRNALNL-SEVQFVVLDEADQMLS 259 (384)
Q Consensus 221 ~~~IlV~Tp~~l~~~l~~~~~~~-~~l~~vViDEah~~~~ 259 (384)
++||||+|++.|.+...+..+.+ .+..+|||||||++.+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 68999999999988765443333 4678999999999987
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=152.05 Aligned_cols=127 Identities=21% Similarity=0.196 Sum_probs=88.1
Q ss_pred cCCCCCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.|| .++|+|.+++.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 477 799999998654 4688999999999999999999998753 56899999999999999999
Q ss_pred HHHhCCCCceEEEECCCC--------hH---------------------------------------HHHHHHhcCCCEE
Q 016712 193 FHESAPSLDTICVYGGTP--------IS---------------------------------------HQMRALDYGVDAV 225 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~--------~~---------------------------------------~~~~~~~~~~~Il 225 (384)
+..+. +++..+.|... .. ...+....++|||
T Consensus 71 ~~~l~--~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 71 AKLLG--LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp HGGGT--CCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred HHhcC--CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 88853 33333322110 00 0001112357999
Q ss_pred EECchhHHHHHHccCC-------CCCCccEEEEeCccccc
Q 016712 226 VGTPGRVIDLIKRNAL-------NLSEVQFVVLDEADQML 258 (384)
Q Consensus 226 V~Tp~~l~~~l~~~~~-------~~~~l~~vViDEah~~~ 258 (384)
|+|+..|.+....+.. .+.+..+|||||||++.
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999999875543221 24577899999999994
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=133.22 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=97.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|....-.+..|+ |..+.||+|||+++.+|++-..+ .|..+.|++|+..||.|-.+.+..+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---------~G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---------IGKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---------cCCceEEEeccHHHHHhHHHHHHHH
Confidence 477 59999999988888887 99999999999999999985543 3777999999999999988888876
Q ss_pred CC--CCceEEEECCC------------------------------------------------ChHHHHHHHhcCCCEEE
Q 016712 197 AP--SLDTICVYGGT------------------------------------------------PISHQMRALDYGVDAVV 226 (384)
Q Consensus 197 ~~--~~~~~~~~g~~------------------------------------------------~~~~~~~~~~~~~~IlV 226 (384)
+. ++.+.+++... ......+.-...+||++
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItY 219 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTY 219 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEE
Confidence 54 67788877621 00111122233489999
Q ss_pred ECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 227 GTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 227 ~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
||...+ .++|+.+. .....+.+.||||+|.++
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 999877 34554432 224568999999999874
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=132.13 Aligned_cols=73 Identities=29% Similarity=0.347 Sum_probs=55.4
Q ss_pred CCCCCcHHHHHHHHHHhC----CC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQ----GR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~----g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
+| .|++.|..++..+.. |. ..++.|.||||||+++. .++... +..+|||+|+..+|.|++..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a-~~~~~~-----------~~~~lvv~~~~~~A~ql~~e 72 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL-----------GRPALVLAPNKILAAQLAAE 72 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH-----------TCCEEEEESSHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEecCHHHHHHHHHH
Confidence 56 799999999886543 33 46789999999998653 233332 23499999999999999999
Q ss_pred HHHhCCCCceE
Q 016712 193 FHESAPSLDTI 203 (384)
Q Consensus 193 ~~~~~~~~~~~ 203 (384)
|+.++++-.+.
T Consensus 73 l~~~~~~~~V~ 83 (664)
T 1c4o_A 73 FRELFPENAVE 83 (664)
T ss_dssp HHHHCTTSEEE
T ss_pred HHHHCCCCeEE
Confidence 99998654433
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-12 Score=130.02 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
+|+|.|.+.+.. +..|+++++.+|||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 689999998864 5578999999999999999999999998754 2578999999999999999998875
Q ss_pred C
Q 016712 197 A 197 (384)
Q Consensus 197 ~ 197 (384)
.
T Consensus 75 ~ 75 (620)
T 4a15_A 75 S 75 (620)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.5e-11 Score=121.37 Aligned_cols=72 Identities=28% Similarity=0.338 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.|+.+|..++..+. .|. ..++.|-||||||++.. .++... +..+|||+|+..+|.|++..++.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a-~~~~~~-----------~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVS-NLIKEV-----------NKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH-----------CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 69999998887654 343 47788999999998542 233332 22499999999999999999999
Q ss_pred hCCCCceEE
Q 016712 196 SAPSLDTIC 204 (384)
Q Consensus 196 ~~~~~~~~~ 204 (384)
++++-.+..
T Consensus 80 ~~~~~~v~~ 88 (661)
T 2d7d_A 80 FFPNNAVEY 88 (661)
T ss_dssp HCTTSEEEE
T ss_pred HcCCCcEEE
Confidence 986544433
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=111.72 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=94.7
Q ss_pred HHHHHHHHcC-CCCCcHHHHHHHHHHhCCCcEEEEccCCCchh--HHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 109 DIVAALARRG-ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT--LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 109 ~l~~~l~~~g-~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT--~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+...|...+ -...++.|..+++.++.++++++.|++|+||| +.++++.+..+. ...+.++++++||..+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------~~~~~~vll~APTg~A 208 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKA 208 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------SSCCCCEEEEBSSHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------hcCCCeEEEEeCChhH
Confidence 3445555432 12237899999999999999999999999999 556666665431 1235689999999999
Q ss_pred HHHHHHHHHHhCCCCceEEE-ECCCChHHHHHHHhcCCC-EEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 186 AKQVEKEFHESAPSLDTICV-YGGTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
|.++.+.+......+++... ..... .. ....+ ++-.+|+.. . +........++++|||||++ |++ .
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~~~~~--~~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~ 276 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQKKRIP--ED----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---L 276 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCCCSCS--CC----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---H
T ss_pred HHHHHHHHHHHHhcCCCCHHHHhccc--hh----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---H
Confidence 99988877653221110000 00000 00 00011 111222211 1 11111222378999999999 544 4
Q ss_pred HHHHHHHHHCCCCCcEEEEEcc
Q 016712 264 EDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT 285 (384)
..+..++..++.+.|++++.-.
T Consensus 277 ~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 277 PMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp HHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHhCCCCCEEEEEcch
Confidence 5678889999989999998543
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-06 Score=82.31 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=80.6
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 110 IVAALARRGISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 110 l~~~l~~~g~~~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
|.....-+.|..+++.|++++..++.. ..+++.|+.|+|||.+. ..++..+... ....+++++||..
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~ 85 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHA 85 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHH
Confidence 334444567888999999999876532 38999999999999754 4445555431 1236999999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH-hc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh
Q 016712 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL-DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (384)
Q Consensus 185 La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~ 262 (384)
.+..+.+.+. .....++. ..... .. +....+.. .....+...++|||||++.+.
T Consensus 86 Aa~~l~~~~~-----~~~~T~h~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~~---- 141 (459)
T 3upu_A 86 AKKILSKLSG-----KEASTIHS------ILKINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMYD---- 141 (459)
T ss_dssp HHHHHHHHHS-----SCEEEHHH------HHTEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGCC----
T ss_pred HHHHHHhhhc-----cchhhHHH------HhccCcccccccchhcc---------cccccccCCCEEEEECchhCC----
Confidence 8877665541 11111110 00000 00 00000000 112345678999999999653
Q ss_pred HHHHHHHHHHCCCCCcEEEEE
Q 016712 263 AEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 263 ~~~~~~il~~l~~~~q~l~~S 283 (384)
...+..++..++...+++++.
T Consensus 142 ~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 142 RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEEC
Confidence 235556667676666666654
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=98.34 E-value=9.3e-06 Score=83.22 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++..+.. ..+.++++++||...+.++.+.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 45689999999999888778999999999999864 334444432 146689999999999999999887653
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=84.52 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=80.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.+++.|.+++..+..++.+++.|+.|+|||... ..++..+.. .+.++++++||...+..+.+... .
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~-----~ 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG-----R 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT-----S
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc-----c
Confidence 589999999999999999999999999999753 334443332 35679999999999887765432 1
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEE
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l 280 (384)
....++ +.+..... .+..........++|||||++.+. ...+..+++.++...+++
T Consensus 255 ~a~Tih---------~ll~~~~~-----------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 255 TASTVH---------RLLGYGPQ-----------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp CEEEHH---------HHTTEETT-----------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred cHHHHH---------HHHcCCcc-----------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 111100 00000000 000111223467899999999653 235667777787777777
Q ss_pred EEE
Q 016712 281 MFS 283 (384)
Q Consensus 281 ~~S 283 (384)
++.
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=84.03 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+.. .++..+... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 456899999999999887778999999999998643 333333321 25679999999999999999988754
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-06 Score=86.44 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++.|.+|+..++..++ .||.||+|+|||.+..-. +..+.. .+.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~-I~~l~~--------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEI-ILQAVK--------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHH-HHHHHH--------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHH-HHHHHh--------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 578999999999886654 789999999999875433 333333 36689999999999999999887654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-05 Score=83.14 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
...+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++..+.. ..+.++++++||..-+.++.+.+.+.+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 34689999999999988878899999999999864 344444432 146689999999999999999887654
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=69.16 Aligned_cols=88 Identities=11% Similarity=-0.023 Sum_probs=57.0
Q ss_pred HHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHh-------------HhHHHHHHHHHhhcceEEEe
Q 016712 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLK-------------QNVMQTAWLMLWLKVIIVSL 360 (384)
Q Consensus 294 ~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~-------------~~~~~~~~~l~~~~~~v~~~ 360 (384)
...|+.+|..|.+.. ......++.++++.+. ...|...++..+. +.++.++..|...|+.+..+
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVK-EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp ----------------------CCSEEEEEECC-GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcC-hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 356788999888743 2355678888888775 4567776655443 67788888999999999999
Q ss_pred cCCCChhhhhchhhhhhcCCcccC
Q 016712 361 CMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 361 hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
||+|++++|++++++|++|+++|+
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vL 108 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVL 108 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999998874
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.6e-05 Score=64.15 Aligned_cols=71 Identities=10% Similarity=-0.014 Sum_probs=59.6
Q ss_pred ccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcC
Q 016712 314 LADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEM 379 (384)
Q Consensus 314 ~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~ 379 (384)
...++.++++.+...+.|...+...+. +.+..++..|...|..+..+||+|++++|++++++|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 456789999988766667776654433 677788889999999999999999999999999999999
Q ss_pred CcccC
Q 016712 380 DVSIY 384 (384)
Q Consensus 380 ~~~V~ 384 (384)
+++|+
T Consensus 84 ~~~vL 88 (175)
T 2rb4_A 84 KEKVL 88 (175)
T ss_dssp SCSEE
T ss_pred CCeEE
Confidence 98874
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00016 Score=74.11 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..+++.|.+++.. .+..++|.|+.|||||.+..--+...+... .....++|++++|+..+.++.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE-----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC-----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 357899999999999997544444443221 1123579999999999999999998763
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=61.00 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=54.9
Q ss_pred CCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCc
Q 016712 316 DGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDV 381 (384)
Q Consensus 316 ~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~ 381 (384)
.++.++++.+...+.|.+.+...+. +.++.++..|...+..+..+||+|++++|++++++|++|++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 3567788877755557776644332 67778888898899999999999999999999999999998
Q ss_pred ccC
Q 016712 382 SIY 384 (384)
Q Consensus 382 ~V~ 384 (384)
+|+
T Consensus 82 ~vl 84 (165)
T 1fuk_A 82 RIL 84 (165)
T ss_dssp SEE
T ss_pred EEE
Confidence 874
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00025 Score=59.37 Aligned_cols=71 Identities=13% Similarity=-0.091 Sum_probs=56.5
Q ss_pred cccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhc
Q 016712 313 KLADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
....++.++++.+. ...|.+.+...+. +.++.++..|...|+.+..+||+|++++|++++++|++
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34556888888775 4567665544332 67778888899999999999999999999999999999
Q ss_pred CCcccC
Q 016712 379 MDVSIY 384 (384)
Q Consensus 379 ~~~~V~ 384 (384)
|+++|+
T Consensus 84 g~~~vl 89 (163)
T 2hjv_A 84 GEYRYL 89 (163)
T ss_dssp TSCSEE
T ss_pred CCCeEE
Confidence 998874
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00022 Score=60.35 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=54.9
Q ss_pred cCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCC
Q 016712 315 ADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 315 ~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
..++.++++.+. ...|...+...+. +.++.++..|...|+.+..+||+|++++|++++++|++|+
T Consensus 3 ~~~i~q~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECC-GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECC-hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 356778887775 4567666544332 6777888889999999999999999999999999999999
Q ss_pred cccC
Q 016712 381 VSIY 384 (384)
Q Consensus 381 ~~V~ 384 (384)
++|+
T Consensus 82 ~~vL 85 (172)
T 1t5i_A 82 RRIL 85 (172)
T ss_dssp CSEE
T ss_pred CcEE
Confidence 8874
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0012 Score=55.96 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHh---------CCCcEEEEccCCCchhHHH
Q 016712 123 FPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 123 ~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~ 153 (384)
.+.|.+++..+. .|+.+++.||+|+|||..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 455666655443 4688999999999999854
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00036 Score=59.83 Aligned_cols=71 Identities=13% Similarity=0.022 Sum_probs=49.1
Q ss_pred cccCCeEEEEEEeccchhhHHHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhh
Q 016712 313 KLADGISLYSIATSMNMQKVENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
....++.++++.+. ...|.+.+...+. +.++.++..|...|+.+..+||+|++++|++++++|+
T Consensus 15 ~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 45677888888876 4567666644433 5667888888888999999999999999999999999
Q ss_pred cCCcccC
Q 016712 378 EMDVSIY 384 (384)
Q Consensus 378 ~~~~~V~ 384 (384)
+|+++|+
T Consensus 94 ~g~~~vL 100 (185)
T 2jgn_A 94 SGKSPIL 100 (185)
T ss_dssp HTSSSEE
T ss_pred cCCCeEE
Confidence 9998874
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00022 Score=68.36 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..++++.|+...|..+.+.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 6899999999877545668999999999999766555543332 24668999999999999888777654
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00057 Score=69.48 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=85.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.++|+|...+..+-..+.+++..+-|+|||.+....++..+.. ..+..++++.|+...|.++.+.++......
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 4899999999877555779999999999999765544444432 235689999999999999988877754322
Q ss_pred c----eEEE-ECCCChHHHHHHHhcCCCEEEEC--chhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 201 D----TICV-YGGTPISHQMRALDYGVDAVVGT--PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 201 ~----~~~~-~g~~~~~~~~~~~~~~~~IlV~T--p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
+ .... ..... -.+.+|..|.+.+ |+.+ .. .+.+++|+||+|.+-+ ....+..+...+
T Consensus 236 p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----rG-----~~~~~~iiDE~~~~~~--~~~l~~~~~~~l 299 (592)
T 3cpe_A 236 PDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----RG-----NSFAMIYIEDCAFIPN--FHDSWLAIQPVI 299 (592)
T ss_dssp CTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH----HH-----SCCSEEEEETGGGCTT--HHHHHHHHHHHH
T ss_pred hHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc----cC-----CCcceEEEehhccCCc--hhHHHHHHHHHh
Confidence 2 1111 11100 0112344444432 3322 11 1367899999998654 223334444444
Q ss_pred C--CCCcEEEEEccCCh
Q 016712 274 P--QNRQSMMFSATMPP 288 (384)
Q Consensus 274 ~--~~~q~l~~SAT~~~ 288 (384)
. .+.++++ ..|+..
T Consensus 300 ~~~~~~~ii~-isTP~~ 315 (592)
T 3cpe_A 300 SSGRRSKIII-TTTPNG 315 (592)
T ss_dssp SSSSCCEEEE-EECCCT
T ss_pred ccCCCceEEE-EeCCCC
Confidence 3 2344444 345543
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0033 Score=61.05 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=52.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
-.++.|+.|+|||... ..+.. ....+|++||++++.++.+.+.+.+. .
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~---------~~~~lVlTpT~~aa~~l~~kl~~~~~--~---------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVN---------FEEDLILVPGRQAAEMIRRRANASGI--I---------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCC---------TTTCEEEESCHHHHHHHHHHHTTTSC--C----------------
T ss_pred EEEEEcCCCCCHHHHH-----HHHhc---------cCCeEEEeCCHHHHHHHHHHhhhcCc--c----------------
Confidence 3678999999999853 22211 13479999999999998888754321 0
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.....-|.|-++++. .......-..++|||||+- |.+.
T Consensus 211 --~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~ 248 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT 248 (446)
T ss_dssp --CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH
T ss_pred --ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH
Confidence 001233556554321 2122222348899999998 4443
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00056 Score=58.57 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=27.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
.|+-.++.|+.|+|||...+--+ ..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~-~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV-EIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHH--------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHH-HHHHH--------CCCeEEEEeecc
Confidence 35567899999999999654333 33322 356799998884
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.017 Score=49.63 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
..-.+|||||+|.+... ....+..++...+.+..+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45678999999987543 34455566666555666665543
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.00016 Score=60.92 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=47.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...++++..+.++.++..|...++.+..+||+|++++|++++++|++|+++|+
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vL 84 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 84 (170)
Confidence 34566777888999999999999999999999999999999999999998875
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0022 Score=59.25 Aligned_cols=66 Identities=17% Similarity=0.032 Sum_probs=51.6
Q ss_pred eEEEEEEeccchhhHHHHHHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 318 ISLYSIATSMNMQKVENALFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.++++.+. ...|.+.+...+ .+.++.++..|...|+.+..+||+|++++|++++++|++|+++|
T Consensus 3 v~~~~i~~~-~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAP-VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECC-SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECC-HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 345555554 355666554332 26777888889889999999999999999999999999999887
Q ss_pred C
Q 016712 384 Y 384 (384)
Q Consensus 384 ~ 384 (384)
+
T Consensus 82 L 82 (300)
T 3i32_A 82 L 82 (300)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0027 Score=56.06 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.|.-.++.|++|+|||...+--+ ..+.. .+.+++++.|...- . . .......+ | ...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~--------~g~kVli~~~~~d~--r-~--~~~i~srl------G-~~~--- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEY--------ADVKYLVFKPKIDT--R-S--IRNIQSRT------G-TSL--- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHH--------TTCCEEEEEECCCG--G-G--CSSCCCCC------C-CSS---
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHh--------cCCEEEEEEeccCc--h-H--HHHHHHhc------C-CCc---
Confidence 35567889999999998654433 33322 36678888876531 0 0 00111111 1 000
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+-+.+...+...+.... .-.+.++|||||++.+... ....+..+.. .+.++++..
T Consensus 67 -------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~---~gi~Vil~G 123 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFDDR-ICEVANILAE---NGFVVIISG 123 (223)
T ss_dssp -------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSCTH-HHHHHHHHHH---TTCEEEEEC
T ss_pred -------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCcHH-HHHHHHHHHh---CCCeEEEEe
Confidence 1234555666666655432 2345789999999974332 2223333222 256666543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0074 Score=58.88 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=24.7
Q ss_pred CccEEEEeCcccccCC-ChHHHHHHHHHHC-CCCCcEEEEEcc
Q 016712 245 EVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSAT 285 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-~~~~~~~~il~~l-~~~~q~l~~SAT 285 (384)
+.++|+|||+|.+.+. .....+..++..+ ..+.++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999998763 2334444444443 345666664443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0029 Score=55.23 Aligned_cols=44 Identities=18% Similarity=0.066 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 341 QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 341 ~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 42 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 42 AETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 67778888898899999999999999999999999999998874
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=54.38 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHH
Q 016712 135 QGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~ 152 (384)
.|..+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999984
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0029 Score=55.62 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999854
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=54.79 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999854
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.022 Score=55.22 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=73.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe--cCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~--Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.-++++|++|+|||....--+ ..+.. .+.+++++. +.+.-+.+....+.... ++++.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--------~G~kVllv~~D~~r~~a~eqL~~~~~~~-gv~~~~~~~~~----- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--------RGYKVGLVAADVYRPAAYDQLLQLGNQI-GVQVYGEPNNQ----- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--------TTCCEEEEEECCSCHHHHHHHHHHHHTT-TCCEECCTTCS-----
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--------cCCeEEEEecCccchhHHHHHHHHHHhc-CCceeeccccC-----
Confidence 357889999999998643222 22221 255566665 33443433333333332 23322111111
Q ss_pred HHHHhcCCCEEEECchhHH-HHHHccCCCCCCccEEEEeCccccc---CCChHHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 215 MRALDYGVDAVVGTPGRVI-DLIKRNALNLSEVQFVVLDEADQML---SVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~-~~l~~~~~~~~~l~~vViDEah~~~---~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
.|..+. ..+. .....+.++||||++-+.. +..+..++..+.+.+.++.-+++++|+.....
T Consensus 163 -------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 163 -------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp -------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred -------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 121111 1111 1223578899999998654 33466777778777777777888899876666
Q ss_pred HHHHHHhc
Q 016712 291 RSLTNKYL 298 (384)
Q Consensus 291 ~~~~~~~l 298 (384)
...+..|.
T Consensus 228 ~~~a~~f~ 235 (433)
T 3kl4_A 228 YDLASRFH 235 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0059 Score=53.31 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
|+=.++.|+.|+|||...+--+.... ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~---------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ---------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH---------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEeccC
Confidence 44457899999999986654444443 23677999999764
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0089 Score=51.34 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=27.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
.|+=.++.|++|+|||...+--+ ..... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a-~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRI-RRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH-HHHHH--------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHH-HHHHH--------CCCEEEEEEecc
Confidence 34557889999999998654433 33322 367799999884
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.013 Score=51.62 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=29.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
.|+=.++.|+.|+|||...+--+.... ..+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecCC
Confidence 356678899999999986655544443 34778999998764
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.018 Score=53.52 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
+.++++.||+|+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 468999999999999864 44445543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.022 Score=53.73 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3468999999999999854
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.021 Score=51.74 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.+..++.+.+.-. .+.+ .+.+.. +..++.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567887767777777765311 1111 112222 134578999999999999854
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.059 Score=48.52 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999864
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0094 Score=61.37 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ....++|+|+.|+..+.++.+++.+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 479999999975 3678999999999999975544444443211 124569999999999999999998864
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.01 Score=51.75 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=27.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
.|.=.++.|+.|+|||...+.- +..... .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~--------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY--------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH--------cCCceEEEEeccC
Confidence 3556789999999999755444 344332 3567999999764
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.015 Score=60.33 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+... .....++|+|+.|+..|.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-----~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-----HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 357899999999999997544444444321 112356999999999999999888775
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.044 Score=50.19 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999865
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.024 Score=48.59 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
|+=.++.|+.|+|||.-. +-.+..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH--------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHH--------cCCeEEEEccc
Confidence 556788999999999643 333333322 25679999887
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.019 Score=53.64 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+|+|.+++..+. +|+ .+++.||.|+|||..+ ..+.+.+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHH
Confidence 4688888776543 443 3899999999999865 3333444
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.052 Score=43.93 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.3
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..+.++++.|++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45679999999999999865
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.017 Score=63.56 Aligned_cols=107 Identities=20% Similarity=0.108 Sum_probs=68.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC-
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~- 199 (384)
++|+-|.++|..- +++++|.|..|||||.+.+--++..+.... ......++|++++|+..+.++.+++......
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~---~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE---NPIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS---SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC---CCCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5899999999753 789999999999999976555555553210 0113457999999999999999888774310
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~ 237 (384)
+.. .. ......+.+..-..+-|+|-..+...+.
T Consensus 85 ~~~----~~-~~~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 85 LVQ----RP-GSLHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp HHH----ST-TCHHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred hhc----Cc-chHHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 000 00 0011112222224577888877765553
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.02 Score=58.40 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=73.5
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.+|..|.+++..+.. ..-.++.|+-|.|||.+..+.+-... ..++|.+|+.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~------------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA------------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS------------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH------------hCcEEECCCHHHHHHHHHHhhC---
Confidence 579999999998876 33579999999999976555543321 2369999998876644433221
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
.|-+..|+.+.. ...+.++||||||=.+. .+.+..++. ...
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~ 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFP 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSS
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCC
Confidence 122334544321 23468999999998653 334444544 344
Q ss_pred EEEEEccCCh
Q 016712 279 SMMFSATMPP 288 (384)
Q Consensus 279 ~l~~SAT~~~ 288 (384)
.++||.|...
T Consensus 281 ~v~~~tTv~G 290 (671)
T 2zpa_A 281 RTLLTTTVQG 290 (671)
T ss_dssp EEEEEEEBSS
T ss_pred eEEEEecCCc
Confidence 6788888753
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.051 Score=46.42 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999854
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.078 Score=49.74 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999854
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.086 Score=51.13 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=64.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe--cCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~--Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.-++++|++|+|||....--+ ..+. ..|.+++++. |.+.-+.++...+.... ++++.....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~--------~~G~kVllv~~D~~R~aa~eqL~~~~~~~-gvpv~~~~~~~d---- 166 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQ--------KRGYKVGVVCSDTWRPGAYHQLRQLLDRY-HIEVFGNPQEKD---- 166 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHH--------TTTCCEEEEECCCSSTHHHHHHHHHHGGG-TCEEECCTTCCC----
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHH--------HCCCeEEEEeCCCcchhHHHHHHHHHHhc-CCcEEecCCCCC----
Confidence 357889999999998653222 2232 2355677766 44554544444444432 233221111111
Q ss_pred HHHHhcCCCEEEECchhHH-HHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHH
Q 016712 215 MRALDYGVDAVVGTPGRVI-DLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~-~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~ 292 (384)
|..+. +.+... .-.+.++||||.+=+.... ....++..+.....++.-++++.||.......
T Consensus 167 --------------p~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 167 --------------AIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp --------------HHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred --------------HHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 11111 111100 0123567777777543321 23344555555555555566777776555555
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
.+..|.
T Consensus 231 ~a~~f~ 236 (443)
T 3dm5_A 231 QALAFK 236 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.14 Score=45.31 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=28.0
Q ss_pred CCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 99 LDISKLDISQDIVAALARR--GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..|+++.-.+.+.+.+.+. .+..+..+... .+...+.+++.||+|+|||..+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 4566665555666666542 11111111111 1123467999999999999854
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.027 Score=53.18 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999854
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.053 Score=45.08 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
..++++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999854
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.018 Score=53.33 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
.+.++|||||+|.+........+..+++..+.++++|+.|-
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 46789999999998622234445555555555666666443
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.05 Score=49.96 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
.+-.+|||||+|.+... ....+..+++..+.++.+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987643 34445556666555666665443
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.18 Score=48.27 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=34.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 96 DEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.+...|++.+=-+...+.|.+.= +..|--++... +...+.+|+.||+|+|||+.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 45678999876677777777641 11111121111 123478999999999999954
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.048 Score=50.40 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.38 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
...+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999854
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.032 Score=52.73 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999854
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.14 Score=44.16 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999854
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.045 Score=46.97 Aligned_cols=139 Identities=17% Similarity=0.099 Sum_probs=72.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH-HHHHHHHHHHHhCCCCceEEEECCCChHH-H
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISH-Q 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~-La~q~~~~~~~~~~~~~~~~~~g~~~~~~-~ 214 (384)
..+++.+++|.|||.+++--++..+ +.|.+|+|+.=.+. .-.--.+.+..+. +.......+..... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~---------g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV---------GHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQN 97 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH---------HTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCC
Confidence 4799999999999999877777776 34788998843331 0000011223331 22111111110000 0
Q ss_pred -HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHH
Q 016712 215 -MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 215 -~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
...... . ...+.... ..+.-.++++||+||+-..+..++ ..++..++...+...-+|+.+--.|+++.
T Consensus 98 ~~~~~~~-a-------~~~l~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 98 READTAA-C-------MAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp HHHHHHH-H-------HHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred cHHHHHH-H-------HHHHHHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 000000 0 11111111 122236789999999976554442 34566677776666767776666777666
Q ss_pred HHHH
Q 016712 292 SLTN 295 (384)
Q Consensus 292 ~~~~ 295 (384)
+++.
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.047 Score=53.19 Aligned_cols=139 Identities=17% Similarity=0.070 Sum_probs=66.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEE-EECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC-VYGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~-~~g~~~~~~~ 214 (384)
|.-+++.|++|+|||... +-+...+.. ..+..++|+.-- .-..|+..++.....++...- ..|.....+.
T Consensus 200 G~l~ii~G~pg~GKT~la-l~ia~~~a~-------~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~ 270 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFA-LTIAQNAAL-------KEGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVRLGQLTDRDF 270 (444)
T ss_dssp TCEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHH
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHH-------hCCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHH
Confidence 346899999999999854 333333322 124457777643 223344444332111111100 1122221111
Q ss_pred H------HHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC-------ChHHHHHHHHHHCC--
Q 016712 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-------GFAEDVEVILERLP-- 274 (384)
Q Consensus 215 ~------~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-------~~~~~~~~il~~l~-- 274 (384)
. ..+. ...+.|- |++.+...+..-.. -.++++||||..+.+... +....+..+.+.+.
T Consensus 271 ~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 271 SRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 1122 2356553 33444333322110 125889999999988753 12233444444332
Q ss_pred ---CCCcEEEEEcc
Q 016712 275 ---QNRQSMMFSAT 285 (384)
Q Consensus 275 ---~~~q~l~~SAT 285 (384)
.++.++++|-.
T Consensus 349 Ake~~v~vi~lsql 362 (444)
T 2q6t_A 349 ARELGIPIIALSQL 362 (444)
T ss_dssp HHHHTSCEEEEEEC
T ss_pred HHHhCCeEEEEecC
Confidence 26778887753
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.93 E-value=0.19 Score=46.39 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-----hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA-----MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-----~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.....+.|.+.-. .|.. .+.+ ...+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887777777777765311 1110 1111 12357999999999999864
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.19 Score=46.69 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=26.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
.+.++|+|||+|.+... ....+..+++..+.+..+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999987643 34455566666665666666543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.069 Score=52.13 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=66.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceE-EEECCCChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI-CVYGGTPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~-~~~g~~~~~~ 213 (384)
.|.-+++.|++|+|||...+- +...+.. ..+..++|+..--. ..|+..++.....++... +..|.....+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~-ia~~~~~-------~~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN-IAQNVAT-------KTNENVAIFSLEMS-AQQLVMRMLCAEGNINAQNLRTGKLTPED 272 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH-HHHHHHH-------HSSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHHHHTSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHHHH-------hCCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCHHH
Confidence 345689999999999985433 3333322 12445788764322 234444432110011100 0112122111
Q ss_pred HH------HHHhcCCCEEEEC-----chhHHHHHHccCCCCCCccEEEEeCcccccCCC-----hHHHHHHHHHHCC---
Q 016712 214 QM------RALDYGVDAVVGT-----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILERLP--- 274 (384)
Q Consensus 214 ~~------~~~~~~~~IlV~T-----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-----~~~~~~~il~~l~--- 274 (384)
.. ..+. ..++.+-. .+.+...+..-. .-.++++||||+.+.+.... ....+..+++.+.
T Consensus 273 ~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA 350 (454)
T 2r6a_A 273 WGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA 350 (454)
T ss_dssp HHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11 1111 24566543 333433332211 12368999999999887432 2334444443332
Q ss_pred --CCCcEEEEEc
Q 016712 275 --QNRQSMMFSA 284 (384)
Q Consensus 275 --~~~q~l~~SA 284 (384)
.++.++++|-
T Consensus 351 ke~~i~vi~~sq 362 (454)
T 2r6a_A 351 RELEVPVIALSQ 362 (454)
T ss_dssp HHHTCCEEEEEC
T ss_pred HHhCCeEEEEec
Confidence 2677887765
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.19 Score=46.76 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=26.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...+++||||+|.+... ....+..+++..+.+..+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987643 3445666677666666666554
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.3 Score=47.52 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+..+|++.+=-+.+.+.|.+.=. .|.. -+.+.. +...+.+|+.||+|+|||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 3456789999877788888876411 1111 111111 123478999999999999854
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.013 Score=54.97 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=66.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~ 213 (384)
.|.-+++.|++|+|||..+ +-+...+.. .+..++|++.- .-..|+..++.....++...-+ .|..+. .
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a~--------~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~~~~l~~g~Ls~-~ 113 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSALN--------DDRGVAVFSLE-MSAEQLALRALSDLTSINMHDLESGRLDD-D 113 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH--------TTCEEEEEESS-SCHHHHHHHHHHHHHCCCHHHHHHTCCCH-H
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH--------cCCeEEEEeCC-CCHHHHHHHHHHHhhCCCHHHHhcCCCCH-H
Confidence 3456899999999999854 333333322 25567777643 3344554444322111211101 122221 1
Q ss_pred HHHHHh------cCCCEEE-ECc----hhHHHHHHccCCCCCCccEEEEeCcccccCCCh----HHHHHHHHHHCC----
Q 016712 214 QMRALD------YGVDAVV-GTP----GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF----AEDVEVILERLP---- 274 (384)
Q Consensus 214 ~~~~~~------~~~~IlV-~Tp----~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~----~~~~~~il~~l~---- 274 (384)
+...+. ....+.| -+| ..+...+.+-.-...++++||||-.+.|...+. ..++..+.+.|.
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAk 193 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAR 193 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 111111 1235555 333 333333322111112689999999998764211 112333333221
Q ss_pred -CCCcEEEEEcc
Q 016712 275 -QNRQSMMFSAT 285 (384)
Q Consensus 275 -~~~q~l~~SAT 285 (384)
-++.++++|-.
T Consensus 194 el~vpVi~lsQl 205 (338)
T 4a1f_A 194 ELEIPIIALVQL 205 (338)
T ss_dssp HHTSCEEEEEEC
T ss_pred HcCCeEEEEEec
Confidence 26778887764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.34 Score=42.27 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.|.-+++.|++|+|||...+--+.... . .+..++|+.-. .-..++.+.+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~--------~~~~v~~~~~e-~~~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K--------MGEPGIYVALE-EHPVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEcc-CCHHHHHHHHHHcC
Confidence 456789999999999986433333322 2 24457777643 33456666665443
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.16 Score=46.40 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=24.7
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+-.+|||||+|.+... ....+..+++..+.+..+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4679999999987643 2334455556555566666655
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.58 Score=45.05 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+..+|++.+=-+...+.|.+. .+..|--++..-+ .-.+.+|+.||+|+|||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 45667899987556666666653 2223333332221 22378999999999999954
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.2 Score=46.29 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=67.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECC------
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG------ 208 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~------ 208 (384)
.|.-+++.|++|+|||...+--+.... . .+..++|++-- .-..|+..++.....++...-+..+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~--------~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-D--------NDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFAS 136 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-T--------TTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCH
Confidence 345689999999999975433333332 1 23567777643 3445555555443222221100011
Q ss_pred CChHHH---HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCcc--EEEEeCcccccCC----ChHHHHHHHHHHCC
Q 016712 209 TPISHQ---MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQ--FVVLDEADQMLSV----GFAEDVEVILERLP 274 (384)
Q Consensus 209 ~~~~~~---~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~--~vViDEah~~~~~----~~~~~~~~il~~l~ 274 (384)
...... ...+. ...+.|- |++.+...+..-. .-..++ +||||-.+.+... +....+..+++.|.
T Consensus 137 ~~~~~l~~a~~~l~-~~~i~i~d~~~~~~~~i~~~i~~l~-~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk 214 (315)
T 3bh0_A 137 EDWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTK-RKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLK 214 (315)
T ss_dssp SCHHHHHHHHHHHH-TSCEEEECCSCCBHHHHHHHHHHHH-HTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHH
Confidence 111110 11111 2456554 3344443333211 112578 9999999987632 22344444444432
Q ss_pred -----CCCcEEEEEc
Q 016712 275 -----QNRQSMMFSA 284 (384)
Q Consensus 275 -----~~~q~l~~SA 284 (384)
.++.++++|-
T Consensus 215 ~lAk~~~i~vi~lsq 229 (315)
T 3bh0_A 215 KMARELDVVVIALSQ 229 (315)
T ss_dssp HHHHHHTCEEEEEEC
T ss_pred HHHHHhCCeEEEEee
Confidence 2666777655
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.3 Score=46.44 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999854
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.36 Score=46.59 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=34.1
Q ss_pred CCCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+...|++.+=-+...+.|.+. .+..|--++..- +...+.+|+.||+|+|||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 34567899987666777666653 111121122111 122367999999999999954
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.52 Score=41.89 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+..+++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999854
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.17 Score=50.22 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCccEEEEeCcccccCC--ChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSV--GFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~--~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
..-.+|||||+|.+... +....+..+++. .+..+|+.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 34568999999998753 233455555554 3566888887753
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.2 Score=46.46 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999854
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.12 Score=50.39 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999854
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.23 Score=46.20 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
.+.+++|+||+|. ++......+..+++..+.+..+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4677999999998 444455667777777766666666665543
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.29 Score=44.79 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999854
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.4 Score=44.79 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.43 Score=41.07 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+++.||+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999754
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.76 Score=38.92 Aligned_cols=73 Identities=18% Similarity=0.349 Sum_probs=55.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+. ..+++.++++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~~ 125 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG--VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQH 125 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT--CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCCE
Confidence 4579999999999999999998874 6788899987765544333 22 48999999 4444 4567888998
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.=+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88743
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.094 Score=47.91 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=25.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..|+++.-.+..++.+.+.- .. -...++++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHH
Confidence 34555544566666665421 10 11236999999999999854
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.4 Score=46.38 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=34.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 96 DEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.+...|++.+=-+...+.|.+. .+..|--++... +.-.+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4567899987666777776653 111111111111 122478999999999999964
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.11 Score=47.43 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.5
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..|.-+++.|++|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 35677899999999999854
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.83 Score=42.78 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-----hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA-----MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-----~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-.....+.|.+.=. .|. -.+.+ ...+.+++.||+|+|||..+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~---~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTH---HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 44667777655556666654210 000 00111 12357999999999999864
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.14 Score=48.64 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.2
Q ss_pred CcEEE--EccCCCchhHHH
Q 016712 137 RDMIG--RARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li--~a~TGsGKT~~~ 153 (384)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999854
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.56 Score=40.79 Aligned_cols=21 Identities=24% Similarity=0.001 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~l 155 (384)
.|.-+++.||+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456789999999999986533
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.58 Score=42.98 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=24.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.|.... ...+.+.++.-+++.-+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 4567899999999986542 233444455444455555544
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.48 Score=38.84 Aligned_cols=74 Identities=15% Similarity=0.305 Sum_probs=55.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gld~~~~~~ 106 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG--YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVA-ARGIDIENISL 106 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TTTCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hcCCchhcCCE
Confidence 4579999999999999999998874 6788889987765544333 33 47899999 332 34677888998
Q ss_pred EEEeCc
Q 016712 249 VVLDEA 254 (384)
Q Consensus 249 vViDEa 254 (384)
||.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887544
|
| >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.42 Score=46.95 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
.|....+.|-||||||++. ..++.. .+..+|||+|+...|.|+++.++.+++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAER-----------HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHH-----------SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHH-----------hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 4567889999999999843 222221 1334899999999999999999998764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.59 Score=44.13 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
|.-+++.|++|+|||..+ +.++..+.. .+..++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~~--------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQK--------AGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHHH--------CCCeEEEEECCC
Confidence 467899999999999855 444433322 244678877543
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.54 Score=43.84 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...-.+|||||+|.+... ....+...++..+.++.+|+.|
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 345679999999987543 3334444555444444455444
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.72 Score=38.22 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++..+..+.+.+.+.+ +.+..++|+.+..+....+ .. ..+|+|+|. .+ ...+++.+++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~ 104 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDG--HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVT 104 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCC
Confidence 35689999999999999999998864 6788889988766554333 33 489999992 22 3467788999
Q ss_pred EEEEeCc
Q 016712 248 FVVLDEA 254 (384)
Q Consensus 248 ~vViDEa 254 (384)
+||.-+.
T Consensus 105 ~Vi~~d~ 111 (175)
T 2rb4_A 105 IVVNFDL 111 (175)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8885443
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.62 Score=38.20 Aligned_cols=74 Identities=12% Similarity=0.307 Sum_probs=55.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~G~d~~~~~~ 101 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-ARGIDVQQVSL 101 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TTTCCCCSCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chh-hcCCCcccCCE
Confidence 5679999999999999999998864 6788889987765544333 23 47999999 222 34667888998
Q ss_pred EEEeCc
Q 016712 249 VVLDEA 254 (384)
Q Consensus 249 vViDEa 254 (384)
||.-+.
T Consensus 102 Vi~~~~ 107 (165)
T 1fuk_A 102 VINYDL 107 (165)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887544
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.14 Score=49.91 Aligned_cols=138 Identities=10% Similarity=0.054 Sum_probs=66.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECC-----C
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGG-----T 209 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~-----~ 209 (384)
|.-+++.|++|+|||... +-+...+.. .+..++|++-- .-..|+..++.....++...-+ .|. .
T Consensus 197 G~liiIaG~pG~GKTtla-l~ia~~~a~--------~g~~vl~fSlE-ms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~ 266 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFA-LKQAKNMSD--------NDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFASE 266 (444)
T ss_dssp SCEEEEEECSSSSHHHHH-HHHHHHHHH--------TTCEEEEECSS-SCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCS
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHH--------cCCEEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcccCCCCHH
Confidence 356899999999999854 333333322 14567777643 2233444443332112211000 111 1
Q ss_pred ChHH---HHHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCcc--EEEEeCcccccCC----ChHHHHHHHHHHCC-
Q 016712 210 PISH---QMRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQ--FVVLDEADQMLSV----GFAEDVEVILERLP- 274 (384)
Q Consensus 210 ~~~~---~~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~--~vViDEah~~~~~----~~~~~~~~il~~l~- 274 (384)
.... -...+. ...+.|- |++.+...+.+-.. -.+++ +||||-.+.|... +....+..+.+.|.
T Consensus 267 ~~~~l~~a~~~l~-~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~ 344 (444)
T 3bgw_A 267 DWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKK 344 (444)
T ss_dssp CHHHHHHHHHHHH-TSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHH
Confidence 1111 111222 2456553 33444443332110 12578 9999999987633 23344554444432
Q ss_pred ----CCCcEEEEEcc
Q 016712 275 ----QNRQSMMFSAT 285 (384)
Q Consensus 275 ----~~~q~l~~SAT 285 (384)
.++.++++|-.
T Consensus 345 lAke~~v~vi~lsql 359 (444)
T 3bgw_A 345 MARELDVVVIALSQL 359 (444)
T ss_dssp HHHHHTCEEEEEEEC
T ss_pred HHHHhCCeEEEEecC
Confidence 26778887763
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.26 Score=48.51 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=27.5
Q ss_pred cEEEEeCcccccCCC----------hHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 247 QFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 247 ~~vViDEah~~~~~~----------~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.+|+|||+|.+.... ....+...+..+.....++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 579999999886421 223344445555666778888888654
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.64 Score=40.06 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=54.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v~~ 102 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQVDL 102 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT--CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCBSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccCcE
Confidence 5679999999999999999998874 6788899998766654443 33 47899999 333 34677888998
Q ss_pred EEE
Q 016712 249 VVL 251 (384)
Q Consensus 249 vVi 251 (384)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.57 Score=43.30 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=52.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
-+++.||+|+|||...+-.+.... .. ..+..++|+..-..+-.. .+++++-+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~------g~g~~vlyId~E~s~~~~---ra~~lGvd~d---------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQ------YPDAVCLFYDSEFGITPA---YLRSMGVDPE---------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HH------CTTCEEEEEESSCCCCHH---HHHHTTCCGG----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hc------CCCceEEEEeccchhhHH---HHHHhCCCHH----------------
Confidence 578999999999986544333332 20 235679998876555332 3555543222
Q ss_pred HhcCCCEEEECchhHHHH-H---Hc-cCCCCCCccEEEEeCccccc
Q 016712 218 LDYGVDAVVGTPGRVIDL-I---KR-NALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~-l---~~-~~~~~~~l~~vViDEah~~~ 258 (384)
++++..|..+.+. + .. ..+.-..+++||||-+..+.
T Consensus 84 -----~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 3444444433332 1 11 11233468999999999886
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=91.78 E-value=1.4 Score=43.80 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=60.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
.+.++||.++++.-+..+++.+.+.++ ++.+..++|+....+....+ .. ..+|+|+| +.+ ...+++.++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~GiDip~v 411 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFPNV 411 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCTTC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chh-hcCCCcccC
Confidence 467899999999999999999998754 68888899988766544433 22 48999999 333 357788999
Q ss_pred cEEEEeCcc
Q 016712 247 QFVVLDEAD 255 (384)
Q Consensus 247 ~~vViDEah 255 (384)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 999876544
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.45 Score=54.34 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHhC------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 130 LEPAMQ------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 130 i~~i~~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
++.++. ++++++.||+|+|||..+.-.+.... ..|.+++|+..-..+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~---------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---------HcCCcEEEEEccccc
Confidence 666666 57999999999999997644444333 246778888866443
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.37 E-value=2.1 Score=35.33 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=56.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .+ ..+|+|+|. . ....+++.+++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~~ 101 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVN 101 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CSTTCCGGGCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC--CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hhcCcchhhCC
Confidence 35679999999999999999998864 6788889987765544333 33 489999993 2 23456778888
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||.-+..
T Consensus 102 ~Vi~~d~p 109 (172)
T 1t5i_A 102 IAFNYDMP 109 (172)
T ss_dssp EEEESSCC
T ss_pred EEEEECCC
Confidence 88865443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=91.28 E-value=1.7 Score=38.84 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=18.7
Q ss_pred HhCCCcEEEEccCCCchhHHHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~l 155 (384)
+..|.-+++.||+|+|||.....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45678899999999999986543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=3.1 Score=37.80 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++-++++|++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3557889999999999864
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=1.1 Score=41.27 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=35.2
Q ss_pred HHHHHhC-----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH-HHHHHHHHHHh
Q 016712 129 VLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHES 196 (384)
Q Consensus 129 ~i~~i~~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L-a~q~~~~~~~~ 196 (384)
.++.++. |.-+++.|++|+|||...+--+.... .... ..+.+..++|+.-...+ ..++...++.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~-~~~~--~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ-LPPE--KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT-SCGG--GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh-cccc--cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3555554 35789999999999985533333211 1000 00124578888754432 34455455544
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.60 E-value=9.7 Score=34.57 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=22.6
Q ss_pred cEEEEeCcccccC---CChHHHHHHHHHHCCCCCcEEEEE
Q 016712 247 QFVVLDEADQMLS---VGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 247 ~~vViDEah~~~~---~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
-+|||||+|.+.. ..+...+..+.... .+..+|+.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 4799999999864 34555666666554 245455443
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=90.52 E-value=0.48 Score=51.69 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=63.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|++++++-+..+++.+++.+++.++..++|+.+..+....+ .+ ..+|+|+| +. ....+++.+++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT-----~v-~e~GiDip~v~ 884 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TI-IETGIDIPTAN 884 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES-----ST-TGGGSCCTTEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEC-----Cc-ceeeecccCCc
Confidence 47789999999999999999999998889999999988765544333 33 58999999 33 34567899999
Q ss_pred EEEEeCccc
Q 016712 248 FVVLDEADQ 256 (384)
Q Consensus 248 ~vViDEah~ 256 (384)
+||+..++.
T Consensus 885 ~VIi~~~~~ 893 (1151)
T 2eyq_A 885 TIIIERADH 893 (1151)
T ss_dssp EEEETTTTS
T ss_pred EEEEeCCCC
Confidence 999887765
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=90.32 E-value=2.3 Score=42.48 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
.+.++||.++|+.-+..+++.+.+.++ ++.+..++|+....+....+ .. ..+|+|+| +.+ ...+++.++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~-~~GiDip~v 360 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFPNV 360 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCTTC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chh-hcCCCcccC
Confidence 467899999999999999999998754 68888899988765544333 22 47899999 333 356788999
Q ss_pred cEEEEeCcc
Q 016712 247 QFVVLDEAD 255 (384)
Q Consensus 247 ~~vViDEah 255 (384)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 999876654
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=90.28 E-value=0.25 Score=39.69 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.5
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
...+.++++.|++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345679999999999999853
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=90.01 E-value=0.82 Score=42.83 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=25.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.|.-+++.|++|+|||...+--+.... . .+..++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~-~--------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ-A--------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEECC
Confidence 346789999999999986544333332 2 24568887754
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.69 Score=38.89 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=46.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+.+.++..+ +.+..++|+.+..+.. ..+.. ..+|+|+| +.+. .++++.+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT--CCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC--CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhh-cCCCcccCC
Confidence 46679999999999999999998864 6788888876544332 23333 47999999 3332 356788888
Q ss_pred EEEEe
Q 016712 248 FVVLD 252 (384)
Q Consensus 248 ~vViD 252 (384)
+||.=
T Consensus 117 ~VI~~ 121 (185)
T 2jgn_A 117 HVINF 121 (185)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88763
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=89.92 E-value=0.6 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999854
|
| >2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.65 E-value=0.65 Score=39.16 Aligned_cols=121 Identities=10% Similarity=0.073 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 122 LFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
..+-|..++..++... -.++.+.-|++|+-..+--++.... ..|.++.+|+|+..-.....+....-.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--------~~Gr~V~vLAp~~~s~~~l~~~~~l~~-- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--------EQGREVQIIAADRRSQMNMKQDERLSG-- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--------HTTCCEEEECSTTHHHHHHSCTTTCSS--
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--------hcCeEEEEEcCchHHHHHHHhhcCcCc--
Confidence 3467889998886554 4677899999999875433333322 257889999999876654332222111
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH-CCCCCc
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-LPQNRQ 278 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~-l~~~~q 278 (384)
+++ +. +.+......|..=+.+|||||-.|. ..++..++.. ...+.|
T Consensus 105 -----------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 105 -----------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp -----------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred -----------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 000 00 1222233333444589999999873 3455555554 235788
Q ss_pred EEEEEcc
Q 016712 279 SMMFSAT 285 (384)
Q Consensus 279 ~l~~SAT 285 (384)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8887544
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.59 E-value=1.9 Score=40.67 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+| +.+. ..+++.+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCC--CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCcccCC
Confidence 46789999999999999999998864 6788889988765544333 22 47999999 5444 467888999
Q ss_pred EEEE
Q 016712 248 FVVL 251 (384)
Q Consensus 248 ~vVi 251 (384)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.26 E-value=0.52 Score=44.33 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
|.-+++.||+|+|||... +.++..+.. .+..++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeccccc
Confidence 456899999999999854 444443322 24568888765433
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=89.18 E-value=0.24 Score=44.67 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHh-hcceEEEecCCCChhhhhchhhhhhcC-Cccc
Q 016712 344 MQTAWLMLW-LKVIIVSLCMGISHKARGRGPFQLSEM-DVSI 383 (384)
Q Consensus 344 ~~~~~~l~~-~~~~v~~~hg~m~~~eR~~il~~F~~~-~~~V 383 (384)
..+...|.. .|+.+..+||+++.++|++++++|+++ +++|
T Consensus 126 ~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v 167 (271)
T 1z5z_A 126 KIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKF 167 (271)
T ss_dssp HHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCE
Confidence 344455555 389999999999999999999999999 6663
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=89.05 E-value=3.9 Score=37.79 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=38.1
Q ss_pred CccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 245 EVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 245 ~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
+.+++++|.+-+.- +.....++..+.+.+.++..++++.++......+.+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 34577888877543 2336666777777777778888999988877777777664
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.99 E-value=2.7 Score=43.59 Aligned_cols=16 Identities=38% Similarity=0.281 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999865
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.76 E-value=0.82 Score=48.22 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999854
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=3.1 Score=37.75 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=29.3
Q ss_pred CCccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHh
Q 016712 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 244 ~~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
.+.++|||||.-.+. +......+..+...+.+..-++.+.++-.....+.++.+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~ 233 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHH
Confidence 356899999995433 222234444555554444445667777554444444433
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=88.47 E-value=1.4 Score=41.44 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=26.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.|.-+++.|++|+|||..++--+.... . .+..++|+.--
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~--------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R--------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCeEEEEeCC
Confidence 356789999999999996644333332 2 24568888763
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=88.26 E-value=6.5 Score=35.86 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345789999999999854
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.07 E-value=1.5 Score=40.12 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=55.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v~~ 99 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQVDL 99 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccceeE
Confidence 567999999999999999998876 47888899998766554443 23 48999999 333 34677889998
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.=+
T Consensus 100 VI~~d 104 (300)
T 3i32_A 100 VVHYR 104 (300)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 87533
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=3.2 Score=35.38 Aligned_cols=19 Identities=21% Similarity=-0.018 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+.+.||+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999853
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.82 E-value=0.23 Score=48.07 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=37.4
Q ss_pred CCCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+..+|++.+--+...+.|.+. .+..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45667899998888888887753 2222333332211 22478999999999999854
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=87.39 E-value=2.1 Score=40.17 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+++.+.+.+ ..+..++|+.+..+....+ .+ ..+|+|+| +.+ ..++++.++++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEG--HQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-ARGIDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TSSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccc-ccCCCccCCCE
Confidence 5689999999999999999999874 6778889988766554433 33 47899999 333 45678899999
Q ss_pred EEEeCc
Q 016712 249 VVLDEA 254 (384)
Q Consensus 249 vViDEa 254 (384)
||.-..
T Consensus 338 Vi~~~~ 343 (412)
T 3fht_A 338 VINFDL 343 (412)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 885433
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=87.29 E-value=10 Score=34.91 Aligned_cols=77 Identities=10% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+++.+ ..+..++|+.+..+....+ .. ..+|+|+| +.+ ..++++.+++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~~ 313 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEG--HEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVL-ARGIDIPTVS 313 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGG-SSSCCCTTEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hcCCCcccCC
Confidence 45789999999999999999998874 6778888887765544333 33 47899999 333 4567889999
Q ss_pred EEEEeCccc
Q 016712 248 FVVLDEADQ 256 (384)
Q Consensus 248 ~vViDEah~ 256 (384)
+||.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 998766654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=87.13 E-value=8 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|++|+|||...
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999854
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=0.8 Score=44.05 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
..++++.|+||+|||... ..++..+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 468999999999999964 44444443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=86.79 E-value=4.6 Score=38.46 Aligned_cols=43 Identities=16% Similarity=0.009 Sum_probs=24.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.-+.+.||+|+|||.....-++..+.. ......+..++|+.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p---~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIP---LDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccC---cccCCCCCcEEEEeCC
Confidence 468899999999998553222222211 0001134568887643
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=86.60 E-value=1 Score=42.12 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999954
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=86.50 E-value=27 Score=35.38 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=60.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH---Hhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++|+.-+..+.+.+.+.+ +++..++|+.+..+.... +.. ..+|+||| +.+ ..++++.+++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l-~~GlDip~v~ 515 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG--IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-REGLDIPEVS 515 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCC-STTCCCTTEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC--CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chh-hCCcccCCCC
Confidence 36789999999999999999999874 677788887765554444 333 48999999 333 4567889999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||+-+++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999998764
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=2.1 Score=39.23 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhh---ccCCCCC----CEEEEEecCHHH-HHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNE---KHGRGRN----PLCLVLAPTREL-AKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~---~~~~~~~----~~~lvl~Pt~~L-a~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||...+--+......... ......| ..++|+.--..+ ..++.+.++.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g 167 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAG 167 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 4568999999999998654333321111000 0000112 578888754432 455555555543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.46 E-value=1.2 Score=50.88 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=35.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.|.++++.|++|+|||..+.--+.+.+ ..|..++|+. ..++..+++ ...++-++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~---------k~Ge~~~Fit-~ee~~~~L~--a~~~G~dl 1133 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFID-AEHALDPIY--ARKLGVDI 1133 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEEC-TTSCCCHHH--HHHTTCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---------HcCCeEEEEE-ccccHHHHH--HHHcCCCh
Confidence 457899999999999997655555554 2366788876 445555555 34444333
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=86.42 E-value=1 Score=44.25 Aligned_cols=50 Identities=6% Similarity=-0.057 Sum_probs=29.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
.|.-+++.|++|+|||... +-+...+.. ..+..++|+.-- +-..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~-------~~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGT-------AMGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTT-------TSCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHH-------hcCCcEEEEecc-CCHHHHHHHH
Confidence 3456899999999999854 333333321 114567777643 2344555554
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=85.52 E-value=2.1 Score=41.26 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
..++++|++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998653
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=85.30 E-value=3 Score=43.13 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999864
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=85.17 E-value=3.5 Score=38.24 Aligned_cols=64 Identities=8% Similarity=-0.029 Sum_probs=34.5
Q ss_pred HHHHhC-----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH-HHHHHHHHHHh
Q 016712 130 LEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHES 196 (384)
Q Consensus 130 i~~i~~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L-a~q~~~~~~~~ 196 (384)
++.++. |.-+++.|++|+|||...+--+...... ....+.+..++|+.-...+ ..++...+..+
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 556664 3468999999999998553333221110 0001135678888754421 33444444443
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=85.13 E-value=2.7 Score=39.09 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+|. . ....+++.+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~~~ 320 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVN 320 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTTEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCcccCC
Confidence 46789999999999999999998864 6778888887765544333 33 479999993 2 23467888999
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||.-+..
T Consensus 321 ~Vi~~~~p 328 (391)
T 1xti_A 321 IAFNYDMP 328 (391)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99876544
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=85.09 E-value=2.6 Score=38.71 Aligned_cols=75 Identities=12% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+++.+ ..+..++|+.+..+....+ .+ ..+|+|+| +.+. ..+++.+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~Gid~~~~~ 308 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIG--FKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMS-RGIDVNDLN 308 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHH-HHCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC--CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-cCCCcccCC
Confidence 45679999999999999999999874 6778888887765544333 23 47899999 3332 356788899
Q ss_pred EEEEeCc
Q 016712 248 FVVLDEA 254 (384)
Q Consensus 248 ~vViDEa 254 (384)
+||.-..
T Consensus 309 ~Vi~~~~ 315 (367)
T 1hv8_A 309 CVINYHL 315 (367)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=4.5 Score=39.91 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=55.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+..+||.++|+.-+..+++.+++.+ +.+..++|+.+..+..... .+ ..+|+|+|. .+ ...+++.+++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~~GiD~p~v~ 306 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKG--ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-GMGINKPNVR 306 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-CTTTCCTTCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCC--CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hCCCCccCcc
Confidence 35679999999999999999999874 6788889988765543333 22 489999993 22 3467888999
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||.-.
T Consensus 307 ~VI~~~ 312 (523)
T 1oyw_A 307 FVVHFD 312 (523)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988643
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=2.7 Score=42.29 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=56.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+.++++.+.+.+ +.+..++|+.+..+....+ .. ..+|+|+|. .+ ...+++.+++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g--~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~~GID~p~V~ 337 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLG--IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-GMGIDKPDVR 337 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-CTTCCCSCEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCC--CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hcCCCccccc
Confidence 46789999999999999999999864 6788899998766554333 22 479999992 22 3467888999
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||.=.
T Consensus 338 ~VI~~~ 343 (591)
T 2v1x_A 338 FVIHHS 343 (591)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988533
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=84.80 E-value=5.8 Score=41.35 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+|+.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999954
|
| >3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* | Back alignment and structure |
|---|
Probab=84.65 E-value=2.7 Score=45.86 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=50.4
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (384)
.+|.|..|||||.+.+--+...+... ..+.++|+|||... .-++.+++....+...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~------~~~~~il~lVP~q~-TFt~~~rl~~~l~~~~----------------- 59 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA------PFGKPIIFLVPDQM-TFLMEYELAKTPDMGG----------------- 59 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC------TTSSCEEEECCGGG-HHHHHHHHTCCSSCSE-----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC------CCCCcEEEEecCcc-cHHHHHHHHHhhhhcc-----------------
Confidence 47889999999997655554444331 23467999999763 3334444443331100
Q ss_pred hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
..++-|+|-.++...+.+..- ....-++|+.+
T Consensus 60 --~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~ 91 (1166)
T 3u4q_B 60 --MIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTG 91 (1166)
T ss_dssp --ESSEEEECHHHHHHHHHHHHS---CTTSCEECHHH
T ss_pred --eeeeEEecHHHHHHHHHHHcC---CCcccCcCHHH
Confidence 136888888887665543211 12334666654
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=84.45 E-value=4 Score=38.32 Aligned_cols=73 Identities=10% Similarity=0.236 Sum_probs=55.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
..++||.++++.-+..+.+.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+|. .+ ..++++.++++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v~~ 347 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREAN--FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQVSL 347 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTEEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCC--CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccCCE
Confidence 4589999999999999999998864 6778889987765544333 22 478999993 33 45678889998
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.-.
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88643
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=84.10 E-value=9.4 Score=37.08 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH---HHhc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.+.++++....-+..+.+.+.+.+. ++..++|+.+..+... .+.+ ..+|+|+|+..+ ..++++.++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~--~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYD--KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STGISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCS--SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHSCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCC--CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hcccccccCcE
Confidence 45566777778888888888888663 7778888877554433 2233 479999996544 34678999999
Q ss_pred EEEeCccc
Q 016712 249 VVLDEADQ 256 (384)
Q Consensus 249 vViDEah~ 256 (384)
||+.....
T Consensus 420 vi~~~~~~ 427 (510)
T 2oca_A 420 VVLAHGVK 427 (510)
T ss_dssp EEESSCCC
T ss_pred EEEeCCCC
Confidence 99988773
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=83.85 E-value=3.9 Score=38.20 Aligned_cols=74 Identities=8% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+|. . ....+++.+++
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~~ 328 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLG--YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAVN 328 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT--CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcC--CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCCC
Confidence 35689999999999999999999875 6777888887765544333 33 479999992 2 23467888999
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||.-+
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=83.74 E-value=7.1 Score=38.25 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
-+.++|++|+|||..
T Consensus 295 VI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCcccHHHH
Confidence 478999999999985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=1.8 Score=41.54 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHHHHh--CCCcEEEEccCCCchhHH
Q 016712 125 IQKAVLEPAM--QGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 125 ~Q~~~i~~i~--~g~d~li~a~TGsGKT~~ 152 (384)
.+...+..+. .|.-+++.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444444443 345689999999999984
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=83.66 E-value=1.3 Score=43.65 Aligned_cols=40 Identities=23% Similarity=0.069 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHH
Q 016712 111 VAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~ 152 (384)
...|.+.|. +++.+..-+.. +..|..++++||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556663 45555555543 56788999999999999984
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=83.44 E-value=10 Score=37.27 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=22.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
.++++|++|+|||....--+ ..+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~--------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR--------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH--------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh--------CCCeEEEEec
Confidence 57889999999998653322 22221 2455777665
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.38 E-value=0.32 Score=44.42 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=31.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHH-HHHHH--HhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEP--AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~--i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-.....+.|.+.-. .|... +.+.. +..++.+++.||+|+|||..+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34567787666677666665310 11100 01111 234578999999999999854
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=83.25 E-value=1.9 Score=41.54 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+.+++|.+|+++-+..+++.+++. ++++..++|.. .......+.+ ..+|+|+| +.+ ...+++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT-----~v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKT-FEREYPTIKQKKPDFILAT-----DIA-EMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSS-CC--------CCCSEEEES-----SST-TCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchh-HHHHHhhhcCCCceEEEEC-----Chh-heeeccC-ceEEE
Confidence 568999999999999999999987 47788888843 3333444444 48999999 333 3456777 88877
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.01 E-value=1.3 Score=43.66 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 110 l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...+.. ++..-...-..++-.+..+.++++.||+|+|||..+
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3444443 333333444455556678899999999999999854
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=83.00 E-value=4.5 Score=38.72 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=54.0
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
++||.++++.-+..+++.+.+.+ +.+..++|+....+....+ .+ ..+|+|+| +. ....+++.++++||
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v-~~rGlDi~~v~~VI 373 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE--FPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SV-ASRGLDIKNIKHVI 373 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT--CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GG-GTSSCCCTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC--CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hh-hhCCCCcccCCEEE
Confidence 39999999999999999998864 6788899987766554433 33 47999999 33 34577889999888
Q ss_pred Ee
Q 016712 251 LD 252 (384)
Q Consensus 251 iD 252 (384)
.=
T Consensus 374 ~~ 375 (434)
T 2db3_A 374 NY 375 (434)
T ss_dssp ES
T ss_pred EE
Confidence 63
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=82.92 E-value=1.5 Score=37.78 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 152 (384)
-+.-|..++..+..|.-+.+.||+|+|||..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3556778888888899999999999999984
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=82.48 E-value=8.6 Score=39.16 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=59.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH---Hhc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++|+.-+..+.+.+.+.+ +++..++|+.+..+.... +.. ..+|+||| +.+ ..++++.++++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~v~l 510 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG--IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEVSL 510 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC--CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCCCCE
Confidence 5689999999999999999999875 677778887765554443 333 48999999 333 35678889999
Q ss_pred EEEeCcccc
Q 016712 249 VVLDEADQM 257 (384)
Q Consensus 249 vViDEah~~ 257 (384)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 999888753
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=82.30 E-value=1.5 Score=38.01 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=31.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||..++--+.+.... .+..++|++-. +-..++.+.+....
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E-~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLE-ERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeeccc-CCHHHHHHHHHHcC
Confidence 4678999999999998543333333322 13446776533 34556666666544
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=82.08 E-value=2.4 Score=38.15 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=81.59 E-value=8.1 Score=36.56 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=53.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEEC--------CCChHHHHH---HHhc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG--------GTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.+.++||.++++.-+..+.+.+... ++.+..++| +.+..+... .+.. ..+|+|+| +.+ ..
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~~~-~~ 431 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----SVG-EE 431 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----GGG-GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----Ccc-cc
Confidence 3667999999999999999999987 467778888 544433332 2333 47999999 222 34
Q ss_pred CCCCCCccEEEEeCcc
Q 016712 240 ALNLSEVQFVVLDEAD 255 (384)
Q Consensus 240 ~~~~~~l~~vViDEah 255 (384)
++++..+++||+-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 6678889988865544
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=81.42 E-value=1.6 Score=41.36 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.9
Q ss_pred CccEEEEeCcccccCC---ChHHHHHHHHHHCCC-CCcEEEEEccC
Q 016712 245 EVQFVVLDEADQMLSV---GFAEDVEVILERLPQ-NRQSMMFSATM 286 (384)
Q Consensus 245 ~l~~vViDEah~~~~~---~~~~~~~~il~~l~~-~~q~l~~SAT~ 286 (384)
.-.++|+||+|.++.. .+...+..+++..++ +.-+++.|-++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~ 307 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNV 307 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCH
Confidence 3568899999998852 255667777777655 45555555554
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=81.06 E-value=1.5 Score=40.29 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHhCCCcEEEEccCCCchhHHH
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...+..+.++++.||+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344556789999999999999854
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=81.03 E-value=3.4 Score=36.97 Aligned_cols=42 Identities=21% Similarity=0.112 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCCCcHHH-HHHHHHHhCCC-----cEEEEccCCCchhHHH
Q 016712 109 DIVAALARRGISKLFPIQ-KAVLEPAMQGR-----DMIGRARTGTGKTLAF 153 (384)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q-~~~i~~i~~g~-----d~li~a~TGsGKT~~~ 153 (384)
++.+-|.-.||. |.+ ..++..+++++ .+++.||+|+|||+.+
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 688888878875 555 33355666653 4999999999999965
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=80.77 E-value=9.4 Score=35.42 Aligned_cols=18 Identities=22% Similarity=-0.027 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
.-+.+.||+|+|||....
T Consensus 132 ~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.54 E-value=0.81 Score=38.76 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=16.7
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..++.++++|++|+|||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 35678999999999999864
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=80.27 E-value=0.8 Score=38.16 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999843
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=80.24 E-value=0.94 Score=42.59 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.3
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~ 152 (384)
.+..|..++++||||+|||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 356889999999999999984
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=80.17 E-value=3 Score=39.01 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=80.12 E-value=0.84 Score=38.77 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999853
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 384 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-50 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 3e-44 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-41 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 1e-41 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-41 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 7e-41 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-39 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 7e-37 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 5e-33 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 2e-28 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 7e-27 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 7e-25 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 5e-22 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-17 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 167 bits (423), Expect = 1e-50
Identities = 70/211 (33%), Positives = 116/211 (54%), Gaps = 7/211 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGI 155
E ++ ++L++S +I+ A+ +G K IQ V+ + +++ +ARTG+GKT +F I
Sbjct: 2 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAI 61
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
P+ G + L + E E + +L +YGG I Q+
Sbjct: 62 PL-----IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI 116
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL + VVGTPGR++D I R LNL V++ +LDEAD+ML++GF +DVE IL +
Sbjct: 117 KALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 175
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++ ++FSATMP I +L KY+ + +
Sbjct: 176 DKRILLFSATMPREILNLAKKYMGDYSFIKA 206
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 151 bits (381), Expect = 3e-44
Identities = 76/216 (35%), Positives = 121/216 (56%), Gaps = 10/216 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L + I + + PIQK + ++ RD++ A+TG+GKT AF IPI++ +
Sbjct: 24 DELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 83
Query: 162 IKFN---EKHGRGRNPLCLVLAPTRELAKQ--VEKEFHESAPSLDTICVYGGTPISHQMR 216
+ + +++ + P CL+LAPTRELA Q E + L + VYGG Q+R
Sbjct: 84 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR 143
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
+ G +V TPGR++D I++N ++L +++VLDEAD+ML +GF + I+E
Sbjct: 144 EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP 203
Query: 274 -PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
NRQ++MFSAT P I+ L +L N + + VG
Sbjct: 204 SGINRQTLMFSATFPKEIQKLAADFLYNYIFMT-VG 238
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 143 bits (362), Expect = 1e-41
Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 7/204 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+++ ++++ + G + IQ+ + P ++G D++ +A++GTGKT F I L +I
Sbjct: 13 DDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 72
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY- 220
+ P L+LAPTRELA Q++K A +D S A
Sbjct: 73 DT------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 126
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
VVGTPGRV D I+R +++ +LDEAD+MLS GF E + I LP Q +
Sbjct: 127 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 186
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+ SATMP + +T K+++NP+ +
Sbjct: 187 LLSATMPNDVLEVTTKFMRNPVRI 210
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (361), Expect = 1e-41
Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 9/208 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT F I IL +I
Sbjct: 15 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 74
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRAL 218
+ LVLAPTRELA+Q++K + C G + +
Sbjct: 75 ------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 128
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + + I ++L N Q
Sbjct: 129 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 188
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
++ SATMP + +T K++++P+ + +
Sbjct: 189 VVLLSATMPSDVLEVTKKFMRDPIRILV 216
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (360), Expect = 2e-41
Identities = 70/207 (33%), Positives = 116/207 (56%), Gaps = 8/207 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L +
Sbjct: 20 DTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL 79
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ L+LAPTRELA Q++K ++ GGT + +R LD
Sbjct: 80 DIQVRE------TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 133
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
YG V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q
Sbjct: 134 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 193
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++ SAT+P I +TNK++ +P+ + +
Sbjct: 194 VLISATLPHEILEMTNKFMTDPIRILV 220
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 141 bits (355), Expect = 7e-41
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 11/208 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ +++ A+ G +Q + A+ G D++ +A++G GKT F + L ++
Sbjct: 4 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL 63
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRAL 218
+ LV+ TRELA Q+ + F + P++ +GG I L
Sbjct: 64 EPVTGQ------VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 117
Query: 219 D-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQN 276
VVGTPGR++ L + +LNL ++ +LDE D+ML DV+ I P
Sbjct: 118 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 177
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+Q MMFSAT+ IR + K++++P+ +
Sbjct: 178 KQVMMFSATLSKEIRPVCRKFMQDPMEI 205
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 137 bits (345), Expect = 2e-39
Identities = 70/212 (33%), Positives = 119/212 (56%), Gaps = 9/212 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+G + + ++++ + G K PIQ+ + A+ GRD++ RA+ GTGK+ A+ IP
Sbjct: 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISH 213
+L+++ + N +V+ PTRELA QV + + + GGT +
Sbjct: 61 LLERL------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
+ LD V V+ TPGR++DLIK+ + VQ +VLDEAD++LS F + +E I+ L
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305
P+NRQ +++SAT P ++ N +L+ P ++
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 130 bits (328), Expect = 7e-37
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 4/205 (1%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ ++++ + G K PIQ+ + A+ GRD++ RA+ GTGKT AF IP
Sbjct: 4 EDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT---- 59
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
++ + L +V L + + GGT + + L+
Sbjct: 60 LEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 119
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V +VGTPGRV+DL R +LS+ ++DEAD+MLS F +E IL LP QS++
Sbjct: 120 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 179
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL 306
FSAT P ++ K+L P ++L
Sbjct: 180 FSATFPLTVKEFMVKHLHKPYEINL 204
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 120 bits (302), Expect = 5e-33
Identities = 63/206 (30%), Positives = 107/206 (51%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ I+ A+ K IQ+ ++ A++G M+G+++TGTGKT A+ +PI++KI
Sbjct: 4 TRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKI 63
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG 221
+ LA +F + C+ GGT + L+
Sbjct: 64 KPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQ 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V+GTPGR+ D I+ AL++ +V+DEAD ML +GF DV+ I R+P++ Q ++
Sbjct: 124 PHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLV 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLV 307
FSAT+P ++ KY++NP V ++
Sbjct: 184 FSATIPEKLKPFLKKYMENPTFVHVL 209
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 108 bits (271), Expect = 2e-28
Identities = 35/215 (16%), Positives = 60/215 (27%), Gaps = 32/215 (14%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
D R+ + + IQK + ++ A TG GKT L +K
Sbjct: 27 DFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKG 86
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--------TICVYGGTPISHQMR 216
C V+ PT L Q + + A
Sbjct: 87 ---------KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 137
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-----------VGFAED 265
V+ T + + L F+ +D+ D +L +GF D
Sbjct: 138 QNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYD 193
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
++ M+ +AT ++ + L N
Sbjct: 194 LKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN 228
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 103 bits (258), Expect = 7e-27
Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 14/187 (7%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
IS V L GI +LFP Q +E G++++ T GKTL + ++ + IK
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDA 224
L + P R LA + + F + I + G S D
Sbjct: 69 ---------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH--LGDCDI 117
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQNRQSMM 281
+V T + LI+ A + V +V+DE + S +E+++ ++ + + +
Sbjct: 118 IVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIG 177
Query: 282 FSATMPP 288
SAT P
Sbjct: 178 LSATAPN 184
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 101 bits (251), Expect = 7e-25
Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 21/191 (10%)
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
I+ + + R I G GKT + I+ + IK R L+LAPTR
Sbjct: 1 IEDDIFR---KKRLTIMDLHPGAGKTKRYLPAIVREAIK--------RGLRTLILAPTRV 49
Query: 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLS 244
+A ++E+ T + RA G + V + + + +
Sbjct: 50 VAAEMEEALRGLPIRYQTPAI----------RAEHTGREIVDLMCHATFTMRLLSPIRVP 99
Query: 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+++DEA A + + +AT P
Sbjct: 100 NYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEE 159
Query: 305 DLVGDSDQKLA 315
+ +
Sbjct: 160 REIPERSWNSG 170
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 90.8 bits (224), Expect = 5e-22
Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 21/208 (10%)
Query: 104 LDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
L++ L G + P Q+ +++ + GRD + TG GK+L + IP
Sbjct: 7 LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA----- 61
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDY 220
N L +V++P L K + + A + +
Sbjct: 62 -------LLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG 114
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV----ILERLPQN 276
+ + P R++ L + +DEA + G E L +
Sbjct: 115 QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT 174
Query: 277 RQSMMFSATMPPWIRS--LTNKYLKNPL 302
M +AT R + L +PL
Sbjct: 175 LPFMALTATADDTTRQDIVRLLGLNDPL 202
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 78.3 bits (191), Expect = 2e-17
Identities = 33/204 (16%), Positives = 73/204 (35%), Gaps = 11/204 (5%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+ RR + + Q+ + + + + TG GKTL + ++ K
Sbjct: 2 VLRRDLIQPRIYQEVIYA-KCKETNCLIVLPTGLGKTLIAMMIAEYRLTK--------YG 52
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRV 232
L+LAPT+ L Q + F V S + R+ + +V TP +
Sbjct: 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI 112
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
+ + ++L +V +V DEA + + + +R +N + +A+
Sbjct: 113 ENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEK 172
Query: 293 LTNKYLKNPL-TVDLVGDSDQKLA 315
+ + ++ ++ +
Sbjct: 173 IMEVINNLGIEHIEYRSENSPDVR 196
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.96 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.96 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.95 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.95 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.94 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.92 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.88 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.78 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.77 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.77 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.7 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.28 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.2 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.7 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.63 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.15 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.05 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 98.01 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.96 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 97.88 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.8 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 97.78 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.66 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 97.65 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 97.57 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.28 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 97.22 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.18 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.14 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.01 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 97.0 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 96.84 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.81 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.69 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.67 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 96.65 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.5 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.49 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.36 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.21 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.19 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.18 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.12 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.87 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 95.85 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 95.84 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.83 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.24 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.88 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 94.73 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.54 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 94.26 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 94.25 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 94.03 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.73 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 93.57 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 93.51 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 93.38 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 93.19 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.14 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 93.02 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 92.97 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 92.73 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 92.63 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.46 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 92.31 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.99 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.58 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.55 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 91.43 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.85 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.77 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 90.63 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 90.62 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.46 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 90.41 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.34 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.08 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 89.74 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 89.43 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 88.91 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.77 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.35 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.32 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.26 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 86.96 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.67 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 86.22 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 86.08 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.7 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 85.69 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 85.65 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.62 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.42 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 85.36 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 84.87 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 84.84 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 84.51 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 83.27 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 83.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 82.4 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 82.13 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 82.01 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 81.5 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 81.21 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.91 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 80.52 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 80.11 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-44 Score=320.39 Aligned_cols=205 Identities=35% Similarity=0.613 Sum_probs=191.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
+...+|++++|++.++++|.++||.+|||+|.++||.+++|+|++++++||||||++|++|+++.+.. ...+++
T Consensus 14 ~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~------~~~~~~ 87 (222)
T d2j0sa1 14 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQ 87 (222)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCC
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc------cccCce
Confidence 34457999999999999999999999999999999999999999999999999999999999998743 235778
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
++|++||++|+.|+++.+..+.. ++.+.+++|+.....+...+..+++|+|+||+++.+++..+...+++++++|+||
T Consensus 88 ~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDE 167 (222)
T d2j0sa1 88 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 167 (222)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecc
Confidence 99999999999999999999875 5677888999998888888889999999999999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
||+|++.||...+..|++.+++++|++++|||+|+++.++++.++++|+.|.+
T Consensus 168 aD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V 220 (222)
T d2j0sa1 168 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220 (222)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECC
T ss_pred hhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999998865
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-44 Score=315.02 Aligned_cols=202 Identities=35% Similarity=0.585 Sum_probs=187.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
++.+|++++|+++++++|.++||..|||+|+++||.+++|+|+++++|||||||++|++|+++++.. ...++++
T Consensus 1 k~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~------~~~~~~~ 74 (206)
T d1veca_ 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQA 74 (206)
T ss_dssp CCSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CCCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc------cccCcce
Confidence 3578999999999999999999999999999999999999999999999999999999999988643 2457889
Q ss_pred EEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 177 LVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+|++||++|+.|+++.+..+.. +.......|+.........+..+++|+|+||+++.+++..+...+++++++|+||
T Consensus 75 lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDE 154 (206)
T d1veca_ 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred EEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEec
Confidence 9999999999999999988754 4556677888888888888888999999999999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEE
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 304 (384)
||.|++.+|..++..|++.+++++|++++|||+|+++.++++.++++|+.|
T Consensus 155 aD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cccccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 999999999999999999999999999999999999999999999999887
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-42 Score=305.41 Aligned_cols=200 Identities=30% Similarity=0.509 Sum_probs=182.5
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
.|++++|++.++++|.++||++|||+|.++||.+++|+|+++++|||||||++|++|+++.+.. ...+++++|+
T Consensus 2 ~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~------~~~~~~~lil 75 (207)
T d1t6na_ 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLVM 75 (207)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEEE
T ss_pred CccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc------cCCCceEEEE
Confidence 5999999999999999999999999999999999999999999999999999999999987633 2457789999
Q ss_pred ecCHHHHHHHHHHHHHhCCC---CceEEEECCCChHHHHHHH-hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 180 APTRELAKQVEKEFHESAPS---LDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~-~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
+||++|+.|+++.++.+... +...+++|+.....+...+ ..++||+|+||+++.+++..+.+.+++++++|+||||
T Consensus 76 ~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD 155 (207)
T d1t6na_ 76 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 155 (207)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred eccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhh
Confidence 99999999999999988753 4567778888877776665 4579999999999999999999999999999999999
Q ss_pred cccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEE
Q 016712 256 QMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (384)
Q Consensus 256 ~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 305 (384)
+|++. +|...+..|++.+++++|++++|||+|+++.++++.++++|+.|.
T Consensus 156 ~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 156 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred hhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEe
Confidence 99985 799999999999999999999999999999999999999998875
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.6e-42 Score=302.75 Aligned_cols=203 Identities=33% Similarity=0.558 Sum_probs=178.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
+...+|++++|++.++++|.++||++|||+|.++||.++.|+|+++++|||||||++|++|+++++.. ...+++
T Consensus 7 ~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~------~~~~~~ 80 (212)
T d1qdea_ 7 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQ 80 (212)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCC
T ss_pred ccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc------cCCCcc
Confidence 34678999999999999999999999999999999999999999999999999999999999998743 346789
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
++|++||++|+.|++..+..+.. ........++....++...+ ++++|+|+||+++..++..+.+.+++++++|+||
T Consensus 81 ~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDE 159 (212)
T d1qdea_ 81 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh-cCCcEEEECCCccccccccCceecCcceEEeehh
Confidence 99999999999999999988765 34555666666555554444 4689999999999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEE
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 305 (384)
||++++.+|..++..+++.+++++|++++|||+|+.+.++++.++++|+.|.
T Consensus 160 ad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 160 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred hhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999884
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-42 Score=305.05 Aligned_cols=205 Identities=33% Similarity=0.536 Sum_probs=181.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
+...+|+++++++.++++|.++||.+|||+|.++||.++.|+|+++++|||||||++|++|+++++.. ...+++
T Consensus 9 e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~------~~~~~~ 82 (218)
T d2g9na1 9 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQ 82 (218)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCC
T ss_pred CccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc------cccCcc
Confidence 45568999999999999999999999999999999999999999999999999999999999998743 245789
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHH-HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM-RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+||++||++||.|+++.+..+... .....+.++....... .....+++|+|+||+++.+++.++...+++++++|+|
T Consensus 83 alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlD 162 (218)
T d2g9na1 83 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLD 162 (218)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred EEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEee
Confidence 999999999999999999998653 4455555555444333 2334568999999999999999999999999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||+|++.+|...+..|++.+++++|++++|||+|+++.++++.++++|+.|.+
T Consensus 163 EaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v 216 (218)
T d2g9na1 163 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216 (218)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEEC
T ss_pred ecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999875
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.4e-41 Score=297.95 Aligned_cols=200 Identities=38% Similarity=0.647 Sum_probs=183.2
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
++|++++++++++++|.++||.+|||+|.++||.+++|+ |+++++|||+|||++|++|+++.... ..++++|
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~-------~~~~~~l 76 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEAI 76 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCEE
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc-------ccCcceE
Confidence 579999999999999999999999999999999999885 99999999999999999999886532 5688999
Q ss_pred EEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
|++||++||.|+++.++.+.. +..+...+|+.....+.+.+ +++||+||||++|.+++.++.+.+++++++||||+|
T Consensus 77 il~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l-~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad 155 (208)
T d1hv8a1 77 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 155 (208)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc-CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChH
Confidence 999999999999999999864 45677888888777766655 469999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
++++.++..++..|++.+++++|++++|||+|+.+.++++.+++||..|+.
T Consensus 156 ~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 156 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred HhhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999998875
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=6.5e-41 Score=302.60 Aligned_cols=211 Identities=35% Similarity=0.591 Sum_probs=189.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhh---ccCCCC
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE---KHGRGR 172 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~---~~~~~~ 172 (384)
....+|++++++++++++|.++||.+|||+|..+||.+++|+|+++++|||+|||++|++|+++++..... ......
T Consensus 18 ~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~ 97 (238)
T d1wrba1 18 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 97 (238)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999875322 122345
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
++++|||+||++||.|+++.+..+.. ++++..+.|+.....+.+....++||+||||++|.+++..+...+.+++++|
T Consensus 98 ~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lV 177 (238)
T d1wrba1 98 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 177 (238)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccceee
Confidence 78999999999999999999988765 4667778888888888888888999999999999999999999999999999
Q ss_pred EeCcccccCCChHHHHHHHHHHCCC----CCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 251 LDEADQMLSVGFAEDVEVILERLPQ----NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 251 iDEah~~~~~~~~~~~~~il~~l~~----~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||+|++++.+|..++..+++.+.. ++|++++|||+|+.+.++++.|+++|+.|.+
T Consensus 178 iDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 178 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999997642 6799999999999999999999999998864
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-40 Score=293.04 Aligned_cols=201 Identities=35% Similarity=0.589 Sum_probs=188.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+|++++|++.++++|.++||.+|||+|.++||.+++|+|+++.+|||+|||++|++|+++.+.. ...+.+++++
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~------~~~~~~~~~~ 75 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQALIM 75 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEEEE
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccc------ccccccceee
Confidence 6999999999999999999999999999999999999999999999999999999999988643 2456789999
Q ss_pred ecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
+|+.+++.|....+..+.. ++.+...+|+.........+..+++|+|+||++|.+++..+.+.+.+++++|+||||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l 155 (206)
T d1s2ma1 76 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 155 (206)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred ccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhh
Confidence 9999999999998888764 67788889999888888888899999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
++.+|..++..|++.+++++|++++|||+|+++.+++..|+++|+.|.+
T Consensus 156 ~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~ 204 (206)
T d1s2ma1 156 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 204 (206)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESC
T ss_pred hhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999998865
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=7.7e-39 Score=283.69 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=179.9
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.+|++++|++.++++|.+.||.+|||+|.+|||.+++|+|+++++|||||||++|++|+++.+.. ......+++
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~------~~~~~~~~~ 74 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVI 74 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccc------ccccccccc
Confidence 36999999999999999999999999999999999999999999999999999999999988643 234667999
Q ss_pred EecCHHHHHHHHHHHHHhCC------CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 179 LAPTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
++|+..++.+.+..+..... ...+.+..++.....+......+++|+|+||+++..++.++...+++++++|||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViD 154 (209)
T d1q0ua_ 75 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 154 (209)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred cccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEe
Confidence 99999999999888776432 234555666665555555566789999999999999999988899999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||++++++|..++..|++.+++++|++++|||+|+++.++++.++++|+.|.+
T Consensus 155 Ead~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 155 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred ecccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999875
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=3.3e-29 Score=220.04 Aligned_cols=185 Identities=24% Similarity=0.306 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+++.+.+.|++.||.+|+|+|.++++.+++|+|+++++|||+|||+++.++++..+.. ++++|||+|+++|
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~---------~~~vl~l~P~~~L 80 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSLYVVPLRAL 80 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEEEEESSHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc---------cCcceeecccHHH
Confidence 5778999999999999999999999999999999999999999999999999887743 5679999999999
Q ss_pred HHHHHHHHHHhCCCC-ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH
Q 016712 186 AKQVEKEFHESAPSL-DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 186 a~q~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~ 264 (384)
+.|+++.++++++.. .+....++..... ....+++|+++||..+...+......+.++++||+||+|++.++.+..
T Consensus 81 ~~q~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~ 157 (202)
T d2p6ra3 81 AGEKYESFKKWEKIGLRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGA 157 (202)
T ss_dssp HHHHHHHHTTTTTTTCCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHH
T ss_pred HHHHHHHHHHHhhccccceeeccCccccc---ccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccch
Confidence 999999999887643 4444444433221 222358999999999999998888788899999999999998887666
Q ss_pred HHHHHHH---HCCCCCcEEEEEccCChhHHHHHHHhcCCCeEE
Q 016712 265 DVEVILE---RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (384)
Q Consensus 265 ~~~~il~---~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 304 (384)
....++. ..++++|+|+||||+|+ ..++ ..|+..+..+
T Consensus 158 ~~~~~l~~i~~~~~~~~~l~lSATl~n-~~~~-~~~l~~~~~~ 198 (202)
T d2p6ra3 158 TLEILVTKMRRMNKALRVIGLSATAPN-VTEI-AEWLDADYYV 198 (202)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCTT-HHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCCc-HHHH-HHHcCCCeee
Confidence 6555544 45678999999999976 3555 4666555444
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=6.7e-29 Score=218.64 Aligned_cols=188 Identities=21% Similarity=0.263 Sum_probs=145.5
Q ss_pred CccCCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..+.++|++...+.|++. ||+.++|+|.++|+.+++|+|+++++|||+|||++|.+|++.. ..++++
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~------------~~~~~~ 70 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVV 70 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEE
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc------------cCceEE
Confidence 356788999999999987 9999999999999999999999999999999999999998743 567999
Q ss_pred EecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH----HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ----MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
++|+++|++|+.+.++..+. ......+....... ........+|+++||..+............+++++|+||+
T Consensus 71 v~P~~~L~~q~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEa 148 (206)
T d1oywa2 71 VSPLISLMKDQVDQLQANGV--AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148 (206)
T ss_dssp ECSCHHHHHHHHHHHHHTTC--CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSG
T ss_pred eccchhhhhhHHHHHHhhcc--cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeee
Confidence 99999999999999998874 33333333222221 1222345899999999886655555566788999999999
Q ss_pred ccccCCCh--HH---HHHHHHHHCCCCCcEEEEEccCChhHHHHH-HH-hcCCCe
Q 016712 255 DQMLSVGF--AE---DVEVILERLPQNRQSMMFSATMPPWIRSLT-NK-YLKNPL 302 (384)
Q Consensus 255 h~~~~~~~--~~---~~~~il~~l~~~~q~l~~SAT~~~~~~~~~-~~-~l~~~~ 302 (384)
|++.++++ .. .+..+...+ +++|+++||||+++.+.+.+ +. ++.+|+
T Consensus 149 H~~~~~~~~~~~~~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeeeccccchHHHHHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 99988763 22 233444455 57999999999999987644 43 478885
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=5.9e-29 Score=223.88 Aligned_cols=178 Identities=19% Similarity=0.162 Sum_probs=130.5
Q ss_pred ccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe
Q 016712 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (384)
Q Consensus 101 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~ 180 (384)
|.+..+.+.+.+ +.+.++.+|+++|+++++.+++|+|+++++|||+|||++++++++... ..+.++|||+
T Consensus 24 ~~~~~~~~~~~~-~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~---------~~~~rvliv~ 93 (237)
T d1gkub1 24 FPEDFLLKEFVE-FFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA---------LKGKRCYVIF 93 (237)
T ss_dssp CTTHHHHHHHHH-HHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHH---------TTSCCEEEEE
T ss_pred CccchhHHHHHH-HHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHH---------HhcCeEEEEe
Confidence 444333444444 455578899999999999999999999999999999999999988766 2467899999
Q ss_pred cCHHHHHHHHHHHHHhCCCCc------eEEEECCCChHHHHHHH--hcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 181 PTRELAKQVEKEFHESAPSLD------TICVYGGTPISHQMRAL--DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 181 Pt~~La~q~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
||++|+.|+++.+++++...+ .....++.........+ ..+++|+|+||++|.+ +...++++++||||
T Consensus 94 Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~----~~~~~~~~~~vVvD 169 (237)
T d1gkub1 94 PTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK----HYRELGHFDFIFVD 169 (237)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH----CSTTSCCCSEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHH----hhhhcCCCCEEEEE
Confidence 999999999999998764332 22333444433333333 2358999999987754 34457889999999
Q ss_pred CcccccCCChHHHHHHHHHHC-------------CCCCcEEEEEccCChhHHHHH
Q 016712 253 EADQMLSVGFAEDVEVILERL-------------PQNRQSMMFSATMPPWIRSLT 294 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l-------------~~~~q~l~~SAT~~~~~~~~~ 294 (384)
|+|.+++.+.. +..++..+ +...|++++|||+++..+..+
T Consensus 170 E~d~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l 222 (237)
T d1gkub1 170 DVDAILKASKN--VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAEL 222 (237)
T ss_dssp CHHHHHTSTHH--HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHH
T ss_pred Chhhhhhcccc--hhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHH
Confidence 99999886533 22333222 456789999999987654443
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.8e-27 Score=209.80 Aligned_cols=209 Identities=16% Similarity=0.216 Sum_probs=160.7
Q ss_pred ccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC------C
Q 016712 73 SSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG------R 137 (384)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~ 137 (384)
|+..|++.+.++.+... |..+....+..| ..+.++.+.+.+.....+|+.|..++..+.++ +
T Consensus 1 G~~~W~k~K~Kakk~i~~lA~eLL~i~akR~~~kg~~~---~~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~ 77 (233)
T d2eyqa3 1 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF---KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 77 (233)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC---CCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---CCCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCcc
Confidence 46788877666554332 212222334433 44788999988876678999999999887643 5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC--ceEEEECCCChHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQM 215 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~--~~~~~~g~~~~~~~~ 215 (384)
+.+++|+||||||++|+.++...+ ..|.++++++||..|+.|++++|+++++++ ++..+++..+..+..
T Consensus 78 ~~LL~GdvGsGKT~V~~~a~~~~~---------~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 148 (233)
T d2eyqa3 78 DRLVCGDVGFGKTEVAMRAAFLAV---------DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 148 (233)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHH---------TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHH---------HcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHH
Confidence 899999999999999999999888 458999999999999999999999988754 566677777765543
Q ss_pred H---HHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHH
Q 016712 216 R---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 216 ~---~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
. .+.. ..+|+||| +.+....+.++++++|||||.|+ |+..-.+.++....++.++++||||.+++.
T Consensus 149 ~~~~~~~~g~~~iviGt-----hs~l~~~~~f~~LgLiIiDEeH~-----fg~kQ~~~l~~~~~~~~~l~~SATPiprtl 218 (233)
T d2eyqa3 149 QILAEVAEGKIDILIGT-----HKLLQSDVKFKDLGLLIVDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTL 218 (233)
T ss_dssp HHHHHHHTTCCSEEEEC-----THHHHSCCCCSSEEEEEEESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHH
T ss_pred HHHHHHhCCCCCEEEee-----hhhhccCCccccccceeeechhh-----hhhHHHHHHHhhCCCCCEEEEecchhHHHH
Confidence 3 3334 48999999 66666778899999999999998 666666666666678999999999999998
Q ss_pred HHHHHhcCCCeE
Q 016712 292 SLTNKYLKNPLT 303 (384)
Q Consensus 292 ~~~~~~l~~~~~ 303 (384)
.++.....+...
T Consensus 219 ~~~~~g~~~~s~ 230 (233)
T d2eyqa3 219 NMAMSGMRDLSI 230 (233)
T ss_dssp HHHHTTTSEEEE
T ss_pred HHHHHhccceee
Confidence 887766544333
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=1.7e-25 Score=195.51 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=137.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
+|+++|.++++.+. ++|+|+++|||+|||+++++++...+.. .+.+++|++|+++|+.|+.+.+.+++.
T Consensus 9 ~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~--------~~~~il~i~P~~~L~~q~~~~~~~~~~~~ 79 (200)
T d1wp9a1 9 QPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (200)
T ss_dssp CCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh--------cCCcEEEEcCchHHHHHHHHHHHHhhccc
Confidence 69999999998876 5789999999999999999888776643 356799999999999999999999875
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
+..+....++.........+. ..+|+++||+.+.+.+......++++++||+||+|++........+...+.....+.+
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 158 (200)
T d1wp9a1 80 PEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (200)
T ss_dssp GGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred ccceeeeecccchhHHHHhhh-cccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCc
Confidence 455655666665555444443 3699999999999999888888999999999999998877655545444444456789
Q ss_pred EEEEEccCChhHHHHHHHhc-CCCeEEEecCCC
Q 016712 279 SMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDS 310 (384)
Q Consensus 279 ~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~~ 310 (384)
+++||||++.....+...+- .+...|.+.++.
T Consensus 159 ~l~~SATp~~~~~~~~~~~~~l~~~~i~~~~~~ 191 (200)
T d1wp9a1 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSEN 191 (200)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTT
T ss_pred EEEEEecCCCcHHHHHHHHhcCCceEEEeCCCC
Confidence 99999998765554433221 134556655443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=5.8e-25 Score=198.36 Aligned_cols=179 Identities=20% Similarity=0.225 Sum_probs=138.4
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 107 SQDIVAALAR-RGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 107 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+..+.+.+.+ ..| ++|+.|.+|+..+..+ ++.+++|+||||||.+|+..++..+.. |.+++++
T Consensus 69 ~~~l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---------g~q~~~m 138 (264)
T d1gm5a3 69 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFM 138 (264)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEE
T ss_pred ChHHHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---------ccceeEE
Confidence 4455666655 455 6999999999998642 589999999999999999999988854 7899999
Q ss_pred ecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 180 APTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||..|+.|+++.++++++. +.+..++|+....+....+ .+ .++|+||| +.+....+.++++++|||||
T Consensus 139 ~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGT-----hsl~~~~~~f~~LglviiDE 213 (264)
T d1gm5a3 139 VPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGT-----HALIQEDVHFKNLGLVIIDE 213 (264)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEEC-----TTHHHHCCCCSCCCEEEEES
T ss_pred eehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEee-----hHHhcCCCCccccceeeecc
Confidence 99999999999999999874 5677778887766544433 33 48999999 55555677889999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEE
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 305 (384)
.|+ |+..-...+.....++++++|||||.++...++..+..+-..|.
T Consensus 214 qH~-----fgv~Qr~~l~~~~~~~~~l~~SATPiprtl~~~~~g~~~~s~i~ 260 (264)
T d1gm5a3 214 QHR-----FGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVID 260 (264)
T ss_dssp CCC-----C-----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEEC
T ss_pred ccc-----cchhhHHHHHHhCcCCCEEEEECCCCHHHHHHHHcCCCCeEeeC
Confidence 999 55444444444445789999999999998888776665666654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.88 E-value=3e-24 Score=199.29 Aligned_cols=220 Identities=14% Similarity=0.053 Sum_probs=138.3
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
+.+|+++++.+|||||||++|+.+++..... .+.++||++||++||+|+++.++.+..+.......+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~--------~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~----- 72 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK--------RGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRA----- 72 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------HTCCEEEEESSHHHHHHHHHHTTTSCCBCCC----------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh--------cCCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEee-----
Confidence 4578899999999999999998888876654 267899999999999999999887654332221111
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC--CCCCcEEEEEccCChhH
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWI 290 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l--~~~~q~l~~SAT~~~~~ 290 (384)
.......|+++|++.+..++. ....+.++++|||||+|++..+++. ...++..+ ....+++++|||++...
T Consensus 73 ----~~~~~~~i~~~t~~~l~~~~~-~~~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~~~~~~~v~~SAT~~~~~ 145 (305)
T d2bmfa2 73 ----EHTGREIVDLMCHATFTMRLL-SPIRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVEMGEAAGIFMTATPPGSR 145 (305)
T ss_dssp -------CCCSEEEEEHHHHHHHHT-SSSCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHHHTSCEEEEECSSCTTCC
T ss_pred ----cccCccccccCCcHHHHHHHh-cCccccceeEEEeeeeeecchhhHH--HHHHHHHhhccccceEEEeecCCCcce
Confidence 122346899999998876655 4456789999999999998765432 12222222 35789999999998653
Q ss_pred HHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhh
Q 016712 291 RSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARG 370 (384)
Q Consensus 291 ~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~ 370 (384)
... ...+................... ..... ......+++...+.+++++..|...+.++..+||++.++++.
T Consensus 146 ~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~ 218 (305)
T d2bmfa2 146 DPF---PQSNAPIMDEEREIPERSWNSGH---EWVTD-FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI 218 (305)
T ss_dssp CSS---CCCSSCEEEEECCCCCSCCSSCC---HHHHS-SCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGG
T ss_pred eee---cccCCcceEEEEeccHHHHHHHH---HHHHh-hCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHHh
Confidence 211 11111111111110000000000 00000 001111234556788889999999999999999999877665
Q ss_pred chhhhhhcCCccc
Q 016712 371 RGPFQLSEMDVSI 383 (384)
Q Consensus 371 ~il~~F~~~~~~V 383 (384)
.|++|+.++
T Consensus 219 ----~~~~~~~~~ 227 (305)
T d2bmfa2 219 ----KTRTNDWDF 227 (305)
T ss_dssp ----GGGTSCCSE
T ss_pred ----hhhccchhh
Confidence 566776654
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.78 E-value=9.1e-20 Score=148.56 Aligned_cols=136 Identities=19% Similarity=0.185 Sum_probs=91.9
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
+.+|+++++++|||+|||++++..++..... .+.++++++|++++++|+++.+.... ...........
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--------~~~~vli~~p~~~l~~q~~~~~~~~~----~~~~~~~~~~~ 71 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD----VKFHTQAFSAH 71 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC----EEEESSCCCCC
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhh--------cCceeeeeecchhHHHHHHHHhhhhh----hhhcccccccc
Confidence 3468999999999999999887666665543 36789999999999999988775543 22221111100
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH-HHHHHHHHCCCCCcEEEEEccCC
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE-DVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~-~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
......+.+.|...+.... .....+.++++||+||||++...++.. .+...+.. .++.++|+||||||
T Consensus 72 -----~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 72 -----GSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPP 140 (140)
T ss_dssp -----CCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred -----cccccchhhhhHHHHHHHH-hccccccceeEEEEccccccChhhHHHHHHHHHHhh-CCCCCEEEEEcCCC
Confidence 0112567777877765543 445678899999999999875443221 11222222 35799999999987
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=1.6e-18 Score=151.60 Aligned_cols=136 Identities=17% Similarity=0.102 Sum_probs=102.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
+++++|.+++..++++++.++.+|||+|||++++.. +..+ +.++||++|++.|+.|+.+.++.++..
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~-~~~~-----------~~~~Liv~p~~~L~~q~~~~~~~~~~~- 136 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAA-INEL-----------STPTLIVVPTLALAEQWKERLGIFGEE- 136 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHH-HHHS-----------CSCEEEEESSHHHHHHHHHHHGGGCGG-
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhH-HHHh-----------cCceeEEEcccchHHHHHHHHHhhccc-
Confidence 599999999999999999999999999999976443 3222 456999999999999999999987642
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEE
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l 280 (384)
.+....|+.. ...+|+|+|...+....... .+++++||+||+|++....+ ..++..+ .....+
T Consensus 137 ~~~~~~~~~~---------~~~~i~i~t~~~~~~~~~~~---~~~~~lvIiDEaH~~~a~~~----~~i~~~~-~~~~~l 199 (206)
T d2fz4a1 137 YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMS-IAPFRL 199 (206)
T ss_dssp GEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTC-CCSEEE
T ss_pred chhhcccccc---------cccccccceehhhhhhhHhh---CCcCCEEEEECCeeCCcHHH----HHHHhcc-CCCcEE
Confidence 3334443321 23589999998876554322 35789999999999865433 4455554 345678
Q ss_pred EEEccC
Q 016712 281 MFSATM 286 (384)
Q Consensus 281 ~~SAT~ 286 (384)
+||||+
T Consensus 200 gLTATl 205 (206)
T d2fz4a1 200 GLTATF 205 (206)
T ss_dssp EEEESC
T ss_pred EEecCC
Confidence 999997
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.77 E-value=5.8e-19 Score=161.69 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
+|+++|.+++..+++.+..++.+|||+|||+++...+.... . ..+.++|||+|+++|+.|+++.|.+++...
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~-~-------~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~ 184 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYL-E-------NYEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHH-H-------HCSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhh-h-------cccceEEEEEcCchhHHHHHHHHHHhhccc
Confidence 69999999999999988999999999999998654443322 2 134579999999999999999999986432
Q ss_pred --ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 201 --DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 201 --~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
.+....++..... ......+|+|+|+..+.... ...++++++||+||||++. ...+..++..+.+...
T Consensus 185 ~~~~~~~~~g~~~~~---~~~~~~~i~i~t~qs~~~~~---~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~~~~ 254 (282)
T d1rifa_ 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCE
T ss_pred cccceeecceecccc---cccccceEEEEeeehhhhhc---ccccCCCCEEEEECCCCCC----chhHHHHHHhccCCCe
Confidence 2344444433221 11224789999987664332 2346789999999999864 3456677777755455
Q ss_pred EEEEEccCChh
Q 016712 279 SMMFSATMPPW 289 (384)
Q Consensus 279 ~l~~SAT~~~~ 289 (384)
.++||||++..
T Consensus 255 rlGlTaT~~~~ 265 (282)
T d1rifa_ 255 KFGLSGSLRDG 265 (282)
T ss_dssp EEEECSSCCTT
T ss_pred EEEEEeecCCC
Confidence 69999998654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.70 E-value=2.6e-17 Score=134.01 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=87.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+..++.+|||+|||+.+...+ . ..+.+++|++|+++|++|+.+.+.+.+.... ....++....
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~----~--------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~~~~---- 71 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAY----A--------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDP-NIRTGVRTIT---- 71 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHH----H--------TTTCCEEEEESCHHHHHHHHHHHHHHHSCCC-EEECSSCEEC----
T ss_pred CEEEEEeCCCCCHHHHHHHHH----H--------HcCCcEEEEcChHHHHHHHHHHHHHHhhccc-cccccccccc----
Confidence 467999999999997542222 1 2467899999999999999999998764333 3333332211
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC--CCCcEEEEEccC
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSATM 286 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~--~~~q~l~~SAT~ 286 (384)
....++++|.+.+... ....++++++|||||+|++... ....+..+++.+. ++..++++||||
T Consensus 72 ---~~~~~~~~~~~~~~~~---~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 72 ---TGSPITYSTYGKFLAD---GGCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp ---CCCSEEEEEHHHHHHT---TGGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ---cccceEEEeeeeeccc---cchhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 1257899998765433 3345788999999999986433 3334556666554 466899999996
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.28 E-value=5e-11 Score=109.09 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=100.8
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
.++|||.+++.-+. .+...|++-.+|.|||+..+ .++..+...... .......+|||+|.. |+.|+.+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qai-a~l~~l~~~~~~-~~~~~~~~LIV~P~s-l~~qW~~ 131 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCI-TLIWTLLKQSPD-CKPEIDKVIVVSPSS-LVRNWYN 131 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHH-HHHHHHHHCCTT-SSCSCSCEEEEECHH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHH-HHHHHHHHhccc-ccCCCCcEEEEccch-hhHHHHH
Confidence 58999999997542 34568999999999998653 333333332111 111234699999975 8899999
Q ss_pred HHHHhCCC-CceEEEECCCChHHHHH--HH-hc-----CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh
Q 016712 192 EFHESAPS-LDTICVYGGTPISHQMR--AL-DY-----GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (384)
Q Consensus 192 ~~~~~~~~-~~~~~~~g~~~~~~~~~--~~-~~-----~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~ 262 (384)
++.++++. ..+..++++........ .. .. ..+++|+|.+.+.... ..+.--++++||+||+|++-..+.
T Consensus 132 Ei~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~--~~l~~~~~~~vI~DEaH~ikn~~s 209 (298)
T d1z3ix2 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSDN 209 (298)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccch--hcccccceeeeecccccccccccc
Confidence 99997753 44455555543222111 11 11 3579999987765433 222334678999999999876542
Q ss_pred HHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 263 AEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 263 ~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.....+..+ .....+++||||..+
T Consensus 210 --~~~~a~~~l-~~~~rllLTGTPi~N 233 (298)
T d1z3ix2 210 --QTYLALNSM-NAQRRVLISGTPIQN 233 (298)
T ss_dssp --HHHHHHHHH-CCSEEEEECSSCSGG
T ss_pred --hhhhhhhcc-ccceeeeecchHHhh
Confidence 222233344 345678999998543
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.20 E-value=4.3e-11 Score=105.28 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++|||.+++.-+. .+...|+.-++|.|||...+.. +..+... .....+|||+| ..+..|+.+++.++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~-~~~~~~~------~~~~~~LIv~p-~~l~~~W~~e~~~~ 83 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKE------NELTPSLVICP-LSVLKNWEEELSKF 83 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHT------TCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHh-hhhhhhc------ccccccceecc-hhhhhHHHHHHHhh
Confidence 58999999987542 4567899999999999987443 4433321 23456899999 56778899999998
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
.....+....+...... ..+.+|+++|.+.+....... --..++||+||+|++-...- .....+..+. .
T Consensus 84 ~~~~~~~~~~~~~~~~~-----~~~~~vvi~~~~~~~~~~~l~---~~~~~~vI~DEah~~k~~~s--~~~~~~~~l~-a 152 (230)
T d1z63a1 84 APHLRFAVFHEDRSKIK-----LEDYDIILTTYAVLLRDTRLK---EVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 152 (230)
T ss_dssp CTTSCEEECSSSTTSCC-----GGGSSEEEEEHHHHTTCHHHH---TCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred cccccceeeccccchhh-----ccCcCEEEeeHHHHHhHHHHh---cccceEEEEEhhhcccccch--hhhhhhhhhc-c
Confidence 87666554433322211 123699999988764432211 22568899999999876432 2223344453 3
Q ss_pred CcEEEEEccCChh-HHHH
Q 016712 277 RQSMMFSATMPPW-IRSL 293 (384)
Q Consensus 277 ~q~l~~SAT~~~~-~~~~ 293 (384)
...+++|+||-.. ..++
T Consensus 153 ~~r~~LTgTPi~n~~~dl 170 (230)
T d1z63a1 153 KYRIALTGTPIENKVDDL 170 (230)
T ss_dssp EEEEEECSSCSTTCHHHH
T ss_pred ceEEEEecchHHhHHHHH
Confidence 4578999998543 4443
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.70 E-value=5.3e-08 Score=85.28 Aligned_cols=164 Identities=19% Similarity=0.227 Sum_probs=115.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .+++.|...-=.+..|+ |....||-|||+++.+|+.-..+ .|..|-|++.+--||..=.+.+..++
T Consensus 78 G~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al---------~g~~vhvvTvNdyLA~RDae~m~~iy 145 (273)
T d1tf5a3 78 GM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGKIF 145 (273)
T ss_dssp SC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred ce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHh---------cCCCceEEecCccccchhhhHHhHHH
Confidence 76 58999988887788875 89999999999999999876653 36779999999999986666666554
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc-CCChHH---
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML-SVGFAE--- 264 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~-~~~~~~--- 264 (384)
. ++.+.+...+....+.... ..+||++||...+ .++++.+. ...+.+.+.||||+|.++ |...-+
T Consensus 146 ~~lGlsvg~~~~~~~~~~r~~~--Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartplii 223 (273)
T d1tf5a3 146 EFLGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 223 (273)
T ss_dssp HHTTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred HHcCCCccccccccCHHHHHHH--hhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEe
Confidence 3 5777777666554443333 3589999999887 35554432 235678999999999875 321100
Q ss_pred ----------HHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 265 ----------DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 265 ----------~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
.+...++.. .++.+||.|.-.+..++...|-
T Consensus 224 sg~~~~~a~it~q~~f~~y---~~l~gmtgta~~~~~e~~~iy~ 264 (273)
T d1tf5a3 224 SGQSMTLATITFQNYFRMY---EKLAGMTGTAKTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEHHHHHTTS---SEEEEEESCCGGGHHHHHHHHC
T ss_pred ccCccchhhhhHHHHHHHH---HHHhCCccccHHHHHHHHhccC
Confidence 122233332 4688888888777777766664
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=5.4e-06 Score=76.72 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=90.4
Q ss_pred CCHH-HHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 106 ISQD-IVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 106 l~~~-l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
+++. +...+.+. .-....+.|..|+..++.++-++|.||.|+|||... ..++..+... ....+.++++.+||-
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i-~~~l~~l~~~----~~~~~~~I~l~ApTg 205 (359)
T d1w36d1 131 VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQM----ADGERCRIRLAAPTG 205 (359)
T ss_dssp CCHHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHH-HHHHHHHHHT----CSSCCCCEEEEBSSH
T ss_pred CChHHHHHHHHHhccCcccccHHHHHHHHHHcCCeEEEEcCCCCCceehH-HHHHHHHHHH----HhccCCeEEEecCcH
Confidence 3443 33444433 233467899999999999999999999999999864 3333333321 123467899999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHH------HHHHccCCCCCCccEEEEeCcccc
Q 016712 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI------DLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~------~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
.-+..+.+........+......... ...-..|..++. ..+..+......+++|||||+-.+
T Consensus 206 kAA~~L~e~~~~~~~~~~~~~~~~~~------------~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv 273 (359)
T d1w36d1 206 KAAARLTESLGKALRQLPLTDEQKKR------------IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 273 (359)
T ss_dssp HHHHHHHHHHTHHHHHSSCCSCCCCS------------CSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGC
T ss_pred HHHHHHHHHHHHHHhhcCchhhhhhh------------hhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhcc
Confidence 98888776654422111100000000 000001111110 112223334456889999999965
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
. ...+..++..++.+.++|++-
T Consensus 274 ~----~~l~~~ll~~~~~~~~lILvG 295 (359)
T d1w36d1 274 D----LPMMSRLIDALPDHARVIFLG 295 (359)
T ss_dssp B----HHHHHHHHHTCCTTCEEEEEE
T ss_pred C----HHHHHHHHHHhcCCCEEEEEC
Confidence 3 245677888888888888764
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=4.8e-06 Score=68.57 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=62.5
Q ss_pred ccccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhh
Q 016712 312 QKLADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 312 ~~~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
+..+++++|+++.+...+.|.+.+...+. +.++.++..+...++.+..+||+|++++|.+++++|+
T Consensus 2 ~~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk 81 (168)
T d2j0sa2 2 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 81 (168)
T ss_dssp GCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHh
Confidence 34578999999999887788887754433 6777889999999999999999999999999999999
Q ss_pred cCCcccC
Q 016712 378 EMDVSIY 384 (384)
Q Consensus 378 ~~~~~V~ 384 (384)
+|+++|+
T Consensus 82 ~g~~~iL 88 (168)
T d2j0sa2 82 SGASRVL 88 (168)
T ss_dssp HTSSCEE
T ss_pred cCCccEE
Confidence 9998874
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=8.9e-06 Score=66.86 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=56.6
Q ss_pred CeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcc
Q 016712 317 GISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVS 382 (384)
Q Consensus 317 ~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~ 382 (384)
++.+|++.+. .++|.+.+...+. +.++.++..|...|..+..+||+|++++|.+++++|++|+++
T Consensus 1 ~l~q~~v~~~-~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~ 79 (168)
T d1t5ia_ 1 GLQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 79 (168)
T ss_dssp CCEEEEEECC-GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEEeC-hHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccce
Confidence 4678888887 5677776655433 777788999999999999999999999999999999999998
Q ss_pred cC
Q 016712 383 IY 384 (384)
Q Consensus 383 V~ 384 (384)
|+
T Consensus 80 iL 81 (168)
T d1t5ia_ 80 IL 81 (168)
T ss_dssp EE
T ss_pred ee
Confidence 74
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=2.1e-06 Score=70.80 Aligned_cols=49 Identities=6% Similarity=-0.177 Sum_probs=44.9
Q ss_pred HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..++.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 37 fc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vL 85 (174)
T d1c4oa2 37 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCL 85 (174)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEE
T ss_pred EEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEE
Confidence 3445588899999999999999999999999999999999999999985
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.80 E-value=2.9e-05 Score=63.83 Aligned_cols=70 Identities=14% Similarity=0.010 Sum_probs=59.5
Q ss_pred ccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcC
Q 016712 314 LADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEM 379 (384)
Q Consensus 314 ~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~ 379 (384)
.++++.|+++.+.. ..|...+...+. +.++.++..|...|+.+..+||+|+.++|++++++|++|
T Consensus 3 tl~~i~q~yi~v~~-~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~ 81 (171)
T d1s2ma2 3 TLKGITQYYAFVEE-RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 81 (171)
T ss_dssp BCTTEEEEEEECCG-GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CccceEEEEEEcCH-HHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC
Confidence 46789999998864 577776654433 778899999999999999999999999999999999999
Q ss_pred CcccC
Q 016712 380 DVSIY 384 (384)
Q Consensus 380 ~~~V~ 384 (384)
+++|+
T Consensus 82 ~~~il 86 (171)
T d1s2ma2 82 KVRTL 86 (171)
T ss_dssp SSSEE
T ss_pred ccccc
Confidence 98874
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.78 E-value=2.8e-05 Score=63.32 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=56.8
Q ss_pred eEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 318 ISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.|+++.+...+.|.+.+...+. ..++.++..|...++.+..+||+|+.++|.+++++|++|+++|
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccce
Confidence 46788888777778877654333 7778999999999999999999999999999999999999887
Q ss_pred C
Q 016712 384 Y 384 (384)
Q Consensus 384 ~ 384 (384)
+
T Consensus 81 L 81 (162)
T d1fuka_ 81 L 81 (162)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.66 E-value=5e-05 Score=67.79 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+++|-|++++.. ....++|.|+.|||||.+.+--+...+.... .+..++||+++|+.++..+...+.+..
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~-----~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcC-----CChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 478999999964 3467999999999999975544433332211 123469999999999999988887765
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=97.65 E-value=7e-06 Score=68.30 Aligned_cols=46 Identities=11% Similarity=-0.109 Sum_probs=42.5
Q ss_pred HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 339 LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 40 ~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vL 85 (181)
T d1t5la2 40 TKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVL 85 (181)
T ss_dssp SHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEE
T ss_pred hhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEE
Confidence 4477888999999999999999999999999999999999999985
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.57 E-value=9e-05 Score=59.70 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=57.5
Q ss_pred CCeEEEEEEeccchhhHHHHHHHHh-------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcc
Q 016712 316 DGISLYSIATSMNMQKVENALFSLK-------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVS 382 (384)
Q Consensus 316 ~~i~~~~~~~~~~~~k~~~l~~~~~-------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~ 382 (384)
.++.|+++.+. .++|.+.+...+. +.++.++..|...|..+..+||+|++.+|.+++++|++|+++
T Consensus 2 ~nI~~~~i~v~-~~~K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 80 (155)
T d1hv8a2 2 ANIEQSYVEVN-ENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 80 (155)
T ss_dssp SSSEEEEEECC-GGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred CCeEEEEEEeC-hHHHHHHHHHHHccCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce
Confidence 46788888886 4678877755443 777889999999999999999999999999999999999988
Q ss_pred cC
Q 016712 383 IY 384 (384)
Q Consensus 383 V~ 384 (384)
|+
T Consensus 81 il 82 (155)
T d1hv8a2 81 IL 82 (155)
T ss_dssp EE
T ss_pred ee
Confidence 74
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.28 E-value=0.00039 Score=62.26 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... .....+++++++|+..+..+...+.+.
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~-----~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-----HVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcC-----CCCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 589999999975 356799999999999997654444433221 112346999999999999998887664
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=97.22 E-value=0.00065 Score=63.28 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.|+-.|=+||..+.+ | ++.++.|-||||||++. ..++... +..+|||+|+..+|.|+++.++.
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~i-A~l~~~~-----------~rp~LVVt~n~~~A~qL~~dL~~ 78 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTI-SNVIAQV-----------NKPTLVIAHNKTLAGQLYSELKE 78 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHH-HHHHHHH-----------TCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHH-HHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 588888888776654 3 56899999999999743 2333332 34599999999999999999999
Q ss_pred hCCCCce
Q 016712 196 SAPSLDT 202 (384)
Q Consensus 196 ~~~~~~~ 202 (384)
++++-.+
T Consensus 79 ~l~~~~v 85 (413)
T d1t5la1 79 FFPHNAV 85 (413)
T ss_dssp HCTTSEE
T ss_pred HcCCCce
Confidence 8865444
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.18 E-value=0.0015 Score=54.91 Aligned_cols=133 Identities=16% Similarity=0.169 Sum_probs=75.1
Q ss_pred Cc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 137 RD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 137 ~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
++ ++++||||+|||....--+. ++.. .+.++.+++- .|.-+.++.+.+.+.. ++++...........
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~-~~~~--------~g~kV~lit~Dt~R~gA~eQL~~~a~~l-~v~~~~~~~~~~~~~ 79 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL-YYKG--------KGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDGESPES 79 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH-HHHH--------TTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTTCCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHH--------CCCcEEEEecccccchHHHHHHHHHHhc-CCccccccccchhhH
Confidence 44 56699999999986433222 2222 2445666665 5666666666666654 345444433333222
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHH
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~ 292 (384)
...... .+ ..+.+.++|+||=+=+.... ....++..+.+...++.-+++++|+...+..+
T Consensus 80 ~~~~~~--------------~~-----~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~ 140 (207)
T d1ls1a2 80 IRRRVE--------------EK-----ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS 140 (207)
T ss_dssp HHHHHH--------------HH-----HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH
T ss_pred HHHHHH--------------HH-----HhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH
Confidence 111000 00 01234556777766654332 24456666777777777788899999888777
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
.+..|.
T Consensus 141 ~~~~f~ 146 (207)
T d1ls1a2 141 VARAFD 146 (207)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=5e-05 Score=64.00 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=29.8
Q ss_pred cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 354 KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 354 ~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++++.++||+|++++++++|.+|++|++||+
T Consensus 57 ~~~i~~lHGkm~~~eke~im~~F~~g~~~IL 87 (211)
T d2eyqa5 57 EARIAIGHGQMRERELERVMNDFHHQRFNVL 87 (211)
T ss_dssp TSCEEECCSSCCHHHHHHHHHHHHTTSCCEE
T ss_pred ceEEEEEEeccCHHHHHHHHHHHHcCCcceE
Confidence 7899999999999999999999999999985
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00071 Score=56.72 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=73.5
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCc
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
..|.|+.||+|..+-....++.+++.++++++.+++|..+..+....+ .+ ..+|+|+| ..+ ...++..+.
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~T-----tvI-EvGiDvpnA 102 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TII-ETGIDIPTA 102 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES-----STT-GGGSCCTTE
T ss_pred HcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEe-----hhh-hhccCCCCC
Confidence 458999999999999999999999999999999999998776554433 33 48999999 333 346789999
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
.++||..||++ -..++..+.-+..
T Consensus 103 ~~iiI~~a~rf----GLaQLhQLRGRVG 126 (211)
T d2eyqa5 103 NTIIIERADHF----GLAQLHQLRGRVG 126 (211)
T ss_dssp EEEEETTTTSS----CHHHHHHHHTTCC
T ss_pred cEEEEecchhc----cccccccccceee
Confidence 99999999983 1234555555543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0018 Score=54.32 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
++|||..++..+. .++ -+++.||.|+|||..+ ..+...+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a-~~~a~~l 48 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYL 48 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHH-HHHHHhc
Confidence 4688888777653 443 3899999999999965 3334444
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00092 Score=55.95 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 341 QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 341 ~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 41 ~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~il 84 (200)
T d1oywa3 41 AKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 84 (200)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred hhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEE
Confidence 77778889999999999999999999999999999999999874
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.00011 Score=61.99 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=28.1
Q ss_pred cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 354 KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 354 ~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.++..+||+|++++|+++|++|++|++||+
T Consensus 64 ~~~v~~lHG~m~~~eke~~m~~F~~g~~~iL 94 (206)
T d1gm5a4 64 EFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 94 (206)
T ss_dssp --CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred CCeEEEEeecccHHHHHHHHHHHHCCCEEEE
Confidence 6789999999999999999999999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.0065 Score=51.84 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=27.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....++||||+|.+... ....+..++...+.++.+++.+-
T Consensus 130 ~~~~iiiide~d~l~~~-~~~~l~~~~e~~~~~~~~Il~tn 169 (252)
T d1sxje2 130 HRYKCVIINEANSLTKD-AQAALRRTMEKYSKNIRLIMVCD 169 (252)
T ss_dssp -CCEEEEEECTTSSCHH-HHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCceEEEeccccccccc-cchhhhcccccccccccceeeec
Confidence 45679999999998655 45556677777766666666443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.65 E-value=0.0064 Score=51.05 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=28.0
Q ss_pred CccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~ 288 (384)
..++|+||++|.+.... ....+-.++..+. .+.++|+.|...|.
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 67899999999887542 3444555555543 45666665555443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0075 Score=50.47 Aligned_cols=131 Identities=14% Similarity=0.182 Sum_probs=66.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec-C-HHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T-RELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P-t-~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
++++||||+|||.+..=-+ .++.. .+.++.+++- | |.=|.++.+.+.+.. ++++.....+........
T Consensus 12 i~lvGptGvGKTTTiAKLA-~~~~~--------~g~kV~lit~Dt~R~gA~eQL~~~a~~l-~v~~~~~~~~~d~~~~l~ 81 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLA-RQFEQ--------QGKSVMLAAGDTFRAAAVEQLQVWGQRN-NIPVIAQHTGADSASVIF 81 (211)
T ss_dssp EEEECCTTSCHHHHHHHHH-HHHHT--------TTCCEEEECCCTTCHHHHHHHHHHHHHT-TCCEECCSTTCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH--------CCCcEEEEecccccccchhhhhhhhhhc-CCcccccccCCCHHHHHH
Confidence 5679999999999643322 22221 2344555553 3 555566666666655 355443333333222211
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCC------CCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLP------QNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~------~~~q~l~~SAT~~~~ 289 (384)
. .+.. ...++.++|+||=+=+.... ....++..+.+.+. +...++.++||....
T Consensus 82 ~-----------------~~~~--a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~ 142 (211)
T d2qy9a2 82 D-----------------AIQA--AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 142 (211)
T ss_dssp H-----------------HHHH--HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHH
T ss_pred H-----------------HHHH--HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcc
Confidence 1 0100 01234566777765543221 12344444444432 344578888988776
Q ss_pred HHHHHHHhc
Q 016712 290 IRSLTNKYL 298 (384)
Q Consensus 290 ~~~~~~~~l 298 (384)
....+..+.
T Consensus 143 ~~~~~~~~~ 151 (211)
T d2qy9a2 143 AVSQAKLFH 151 (211)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHhhhh
Confidence 555555443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.50 E-value=0.0077 Score=50.28 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
++-++++||||+|||....=-+ .++.. .+.++.+++- .|.=+.++.+.+.+.. ++++.....+.....
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA-~~~~~--------~g~kV~lit~Dt~R~gA~eQL~~~a~~l-~i~~~~~~~~~d~~~ 75 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLG-RYYQN--------LGKKVMFCAGDTFRAAGGTQLSEWGKRL-SIPVIQGPEGTDPAA 75 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH-HHHHT--------TTCCEEEECCCCSSTTHHHHHHHHHHHH-TCCEECCCTTCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HHHHH--------CCCcEEEEEeccccccchhhHhhccccc-CceEEeccCCccHHH
Confidence 3457889999999999743322 22221 2344555553 3566766676666654 344333333333222
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHC------CCCCcEEEEEccC
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERL------PQNRQSMMFSATM 286 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l------~~~~q~l~~SAT~ 286 (384)
..... .. ....++.++|+||=+=+.... ..-.++..+.+.. .+..-+++++||.
T Consensus 76 ~~~~~-----------------~~--~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~ 136 (207)
T d1okkd2 76 LAYDA-----------------VQ--AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 136 (207)
T ss_dssp HHHHH-----------------HH--HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB
T ss_pred HHHHH-----------------HH--HHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeeccc
Confidence 21110 00 000123455666655543322 1223333333322 2344578889998
Q ss_pred ChhHHHHHHHh
Q 016712 287 PPWIRSLTNKY 297 (384)
Q Consensus 287 ~~~~~~~~~~~ 297 (384)
..+....+..+
T Consensus 137 ~~~~~~~~~~~ 147 (207)
T d1okkd2 137 GQNGLEQAKKF 147 (207)
T ss_dssp CTHHHHHHHHH
T ss_pred CchHHHHHHHh
Confidence 77655544444
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.0093 Score=49.42 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
....+++||||||+|... -...+.++++.-+.+..+++.|..+
T Consensus 77 ~~~~KviIId~ad~l~~~-aqNaLLK~LEEPp~~t~fiLit~~~ 119 (198)
T d2gnoa2 77 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNTRRW 119 (198)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cCCCEEEEEeCccccchh-hhhHHHHHHhCCCCCceeeeccCCh
Confidence 356789999999998665 4445566666656677777766553
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.36 E-value=0.015 Score=48.78 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 240 ~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.....+..++||||+|.+... ....+..++......+.+++.+
T Consensus 94 ~~~~~~~kiiiiDe~d~~~~~-~~~~Ll~~le~~~~~~~~~~~~ 136 (227)
T d1sxjc2 94 QIFSKGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 136 (227)
T ss_dssp CSSSCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cccCCCeEEEEEeccccchhh-HHHHHHHHhhhcccceeecccc
Confidence 344456679999999988655 3445556666655555444443
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.013 Score=50.31 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH--hCCCcEEEEccCCCchhHHH
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA--MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~g~d~li~a~TGsGKT~~~ 153 (384)
.+...|++++--+.+.+.|.+. + .+ ..+.+.+... ...+.+|+.||+|+|||..+
T Consensus 3 ~p~~~~~di~G~~~~k~~l~~~-i-~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 3 APKVTFKDVAGAEEAKEELKEI-V-EF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHH-H-HH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCcHHHHccHHHHHHHHHHH-H-HH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 3456788887667777666542 0 00 0011122221 11256999999999999854
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.19 E-value=0.018 Score=48.14 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=62.8
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
++++||||+|||....=-+ .++.. .+.++.+++- .|.=+.++.+.+.+.. ++++..............
T Consensus 15 i~lvGptGvGKTTTiAKLA-~~~~~--------~g~kV~lit~Dt~R~ga~eQL~~~a~~l-~v~~~~~~~~~~~~~~~~ 84 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA-YFYKK--------KGFKVGLVGADVYRPAALEQLQQLGQQI-GVPVYGEPGEKDVVGIAK 84 (211)
T ss_dssp EEEECSCCC----HHHHHH-HHHHH--------TTCCEEEEECCCSSHHHHHHHHHHHHHH-TCCEECCTTCCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH--------CCCceEEEEeeccccchhHHHHHhcccc-CcceeecccchhhhHHHH
Confidence 6679999999998643222 22222 2334555554 3555555555655544 344333222222211111
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC---hHHHHHHHHHHCCCCCcEEEEEccCChhHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG---FAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~---~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~ 293 (384)
. .+. .....+.++|+||=+=+..... ...++..+.....+..-+++++|+........
T Consensus 85 ~-----------------a~~--~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~ 145 (211)
T d1j8yf2 85 R-----------------GVE--KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL 145 (211)
T ss_dssp H-----------------HHH--HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH
T ss_pred H-----------------HHH--HhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHH
Confidence 0 000 0012345667777554322111 23456666777766666888899987665555
Q ss_pred HHHhc
Q 016712 294 TNKYL 298 (384)
Q Consensus 294 ~~~~l 298 (384)
...+.
T Consensus 146 ~~~~~ 150 (211)
T d1j8yf2 146 ASKFN 150 (211)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 44443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.024 Score=48.04 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...+++||||+|.|... ....+..+++..+.++.+++.+
T Consensus 114 ~~~kviiIde~d~l~~~-~q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCCEEEEEECcccCCHH-HHHHHHHHHhcCCCCeEEEEEc
Confidence 35679999999997543 3344555565545555555544
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.018 Score=48.28 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=29.6
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
.....++|+||+|.+... ....+...+...+..+.+++.+....
T Consensus 99 ~~~~kviiiDe~d~~~~~-~~~~ll~~~e~~~~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 99 PGKHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACNQSN 142 (224)
T ss_dssp TTCCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CcceEEEEEecccccchh-HHHHHhhhccccccceeeeeccCchh
Confidence 345679999999998765 33444555666666777777666543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.87 E-value=0.02 Score=47.79 Aligned_cols=52 Identities=23% Similarity=0.209 Sum_probs=28.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec-CHHHHHHHHHHHHHhC
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-TRELAKQVEKEFHESA 197 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P-t~~La~q~~~~~~~~~ 197 (384)
-++++||||+|||....=-+ .++.. ...+-+|+-+- .|.=+.++.+.+.+..
T Consensus 13 vi~lvGptGvGKTTTiAKLA-a~~~~-------~~~kV~lit~Dt~R~gA~eQL~~~a~~l 65 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLA-KMFVD-------EGKSVVLAAADTFRAAAIEQLKIWGERV 65 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHH-------TTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHH-------CCCceEEEeecccccchhHHHHHHhhhc
Confidence 36779999999998743222 22322 11233444444 4555556666655543
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=95.85 E-value=0.017 Score=53.27 Aligned_cols=70 Identities=29% Similarity=0.330 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHH----hCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPA----MQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i----~~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.|+..|-++|..+ ..|. ...+.|-+||+|+++. ..++... +..+|||+|+...|.++++.+..
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~-A~l~~~~-----------~rp~LvVt~~~~~A~~l~~dL~~ 75 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTM-AKVIEAL-----------GRPALVLAPNKILAAQLAAEFRE 75 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHH-----------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH-HHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 5777887776654 4454 4688999999999742 2233322 33489999999999999999999
Q ss_pred hCCCCce
Q 016712 196 SAPSLDT 202 (384)
Q Consensus 196 ~~~~~~~ 202 (384)
+.++-.+
T Consensus 76 ~l~~~~v 82 (408)
T d1c4oa1 76 LFPENAV 82 (408)
T ss_dssp HCTTSEE
T ss_pred hcCccce
Confidence 8765443
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=95.84 E-value=0.066 Score=43.01 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=62.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.|+|+.-+..+.+.|.+.+ +++..++|+.+..+....+ .+ ..+|+|+| +.+ ...+++++++
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~G--i~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT-----~v~-~~GiDip~V~ 101 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEHG--IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEVS 101 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTEE
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhcC--CceEEEecccchHHHHHHHHHHHCCCeEEEEee-----eee-eeeccCCCCc
Confidence 47789999999999999999999975 7889999998876655444 33 48999999 333 4567899999
Q ss_pred EEEEeCccc
Q 016712 248 FVVLDEADQ 256 (384)
Q Consensus 248 ~vViDEah~ 256 (384)
+||+=.++.
T Consensus 102 ~Vi~~~~~~ 110 (174)
T d1c4oa2 102 LVAILDADK 110 (174)
T ss_dssp EEEETTTTS
T ss_pred EEEEecccc
Confidence 999877665
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.83 E-value=0.028 Score=47.16 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=27.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.|+++-..+.+.+.|... +.. ..-.++++.||+|+|||.++
T Consensus 22 ~~~diig~~~~~~~l~~~------------i~~-~~~~~lll~Gp~G~GKTtla 62 (231)
T d1iqpa2 22 RLDDIVGQEHIVKRLKHY------------VKT-GSMPHLLFAGPPGVGKTTAA 62 (231)
T ss_dssp STTTCCSCHHHHHHHHHH------------HHH-TCCCEEEEESCTTSSHHHHH
T ss_pred CHHHccCcHHHHHHHHHH------------HHc-CCCCeEEEECCCCCcHHHHH
Confidence 566776667776666542 000 11246999999999999864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.046 Score=46.95 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCCCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARR--GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...+|++.+-.+.+.+.+.+. .+..+..+|..- ....+.+++.||+|+|||..+
T Consensus 7 ~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH
Confidence 346788887777777776542 111111122111 112367999999999999864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.071 Score=44.44 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=29.2
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
....+|+||+|.+... ....+..++......+.++..+....+....+..
T Consensus 108 ~~~viiiDe~d~l~~~-~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 157 (237)
T d1sxjd2 108 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 157 (237)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred CceEEEEecccccCHH-HHHHHhhccccccccccccccccccccccccccc
Confidence 4568999999988765 3334455555555556666555444333333333
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=94.73 E-value=0.05 Score=44.11 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=61.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.+++|.++++.-+..+...+++.+ +.+..++|+.+..+....+ .+ ..+|+|+| +.+ ..++++.++++
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~g--~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaT-----dv~-~rGiDip~v~~ 102 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEAG--IKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-REGLDIPEVSL 102 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTTT--CCEEEECSSCCHHHHHHHHHHHHHTSCSEEEES-----CCC-SSSCCCTTEEE
T ss_pred CCeEEEEeehhhhhHHHHHHHHhCC--cceeEecCCccHHHHHHHHHHHHCCCCCEEEeh-----hHH-HccCCCCCCCE
Confidence 5689999999999999999999875 7888999998876655544 33 58999999 333 35678999999
Q ss_pred EEEeCccc
Q 016712 249 VVLDEADQ 256 (384)
Q Consensus 249 vViDEah~ 256 (384)
||.-++..
T Consensus 103 VI~~d~p~ 110 (181)
T d1t5la2 103 VAILDADK 110 (181)
T ss_dssp EEETTTTS
T ss_pred EEEecCCc
Confidence 99988875
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.54 E-value=0.017 Score=51.58 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHHHHcCCCC---CcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 112 AALARRGISK---LFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 112 ~~l~~~g~~~---~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
..|.+.|+.. ..+.+...+.. +..+++++++|+||||||.. +-.++..+ ....+++.|--+.||
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i---------~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFI---------PKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGS---------CTTCCEEEEESSCCC
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhc---------ccccceeeccchhhh
Confidence 4455555543 23444444444 45678999999999999984 33333332 235568888888887
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=94.26 E-value=0.0061 Score=53.37 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=42.2
Q ss_pred HHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhh----------hchhhhhhcCCcccC
Q 016712 334 NALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKAR----------GRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR----------~~il~~F~~~~~~V~ 384 (384)
+++++.++.+++++..|...|+++..+||+|+.+.| +++++.|++|++|++
T Consensus 40 LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvV 100 (299)
T d1a1va2 40 LIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSV 100 (299)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEE
T ss_pred EEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEE
Confidence 346678899999999999999999999999999987 578999999998863
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=94.25 E-value=0.08 Score=40.85 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=51.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (384)
-++.||..||||.- ++-.++.... .+.+++++-|...- +... .+ ..+.|..
T Consensus 5 ~~i~GpMfsGKTte-Li~~~~~~~~--------~~~kv~~ikp~~D~---------R~~~--~i-~s~~g~~-------- 55 (139)
T d2b8ta1 5 EFITGPMFAGKTAE-LIRRLHRLEY--------ADVKYLVFKPKIDT---------RSIR--NI-QSRTGTS-------- 55 (139)
T ss_dssp EEEECSTTSCHHHH-HHHHHHHHHH--------TTCCEEEEEECCCG---------GGCS--SC-CCCCCCS--------
T ss_pred EEEEccccCHHHHH-HHHHHHHHHH--------CCCcEEEEEEcccc---------cccc--eE-EcccCce--------
Confidence 47899999999984 3444444322 36679999997542 1111 11 1111111
Q ss_pred hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
-..+.+.+...+.+.+..... ..+.++|.|||+|-+
T Consensus 56 --~~~~~~~~~~~~~~~~~~~~~-~~~~dvI~IDE~QFf 91 (139)
T d2b8ta1 56 --LPSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 91 (139)
T ss_dssp --SCCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred --eeeEEeccchhhHHHHHhhcc-ccCcCEEEechhhhc
Confidence 124556665656566554332 467899999999964
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.21 Score=39.28 Aligned_cols=75 Identities=12% Similarity=0.297 Sum_probs=58.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh----cCCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
...++||.|.++.-+.++.+.+...+ +.+..++|+.+..+....+. ....|+|+| +.+ ..++++.+++
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~T-----dv~-~rGiDi~~v~ 97 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-ARGIDVQQVS 97 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TTTCCCCSCS
T ss_pred CCCcEEEEEEEEchHHHHHHHHhhcC--ceEEEeccCCchhhHHHHHHHHhhcccceeecc-----ccc-cccccCCCce
Confidence 35679999999999999999998875 67888899888766655443 258899999 443 4567899999
Q ss_pred EEEEeCc
Q 016712 248 FVVLDEA 254 (384)
Q Consensus 248 ~vViDEa 254 (384)
+||.=+.
T Consensus 98 ~VI~~d~ 104 (162)
T d1fuka_ 98 LVINYDL 104 (162)
T ss_dssp EEEESSC
T ss_pred EEEEecc
Confidence 9987554
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.73 E-value=0.031 Score=50.67 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++|++||||+|||+.+
T Consensus 69 ~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred cceeeeCCCCccHHHHH
Confidence 58999999999999965
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.57 E-value=0.1 Score=40.25 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=26.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
.=-+++||..||||.- ++-.++.... .+.+++++-|...
T Consensus 8 ~l~lI~GpMfSGKTte-Li~~~~~~~~--------~g~~vl~i~~~~D 46 (141)
T d1xx6a1 8 WVEVIVGPMYSGKSEE-LIRRIRRAKI--------AKQKIQVFKPEID 46 (141)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHHHHHH--------TTCCEEEEEEC--
T ss_pred eEEEEEeccccHHHHH-HHHHHHHhhh--------cCCcEEEEEeccc
Confidence 3358899999999984 4444444432 3667999999764
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.51 E-value=0.25 Score=38.44 Aligned_cols=73 Identities=12% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh---c-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+.++++.+++.+ +.+..++++.+..+....+. . ...|+|+| +.+. .++++.++++
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T-----~~~~-~Gid~~~v~~ 99 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRDIG--FKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMS-RGIDVNDLNC 99 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHH-HHCCCSCCSE
T ss_pred CCCEEEEECchHHHHHHHhhhcccc--cccccccccchhhhhhhhhhhhhcccceeeeeh-----hHHh-hhhhhccCcE
Confidence 4579999999999999999999865 67888888877666544443 2 47999999 3333 3567888888
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.=+
T Consensus 100 Vi~~d 104 (155)
T d1hv8a2 100 VINYH 104 (155)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 88533
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.21 Score=40.81 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh---c-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++|+.-+..+...+...+ +.+..++|+.+..+....+. . ..+|+|+| +.+ ..++++.+++
T Consensus 29 ~~~~~IIF~~t~~~~~~l~~~l~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT-----d~~-~~GiD~p~v~ 100 (200)
T d1oywa3 29 RGKSGIIYCNSRAKVEDTAARLQSKG--ISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-----VAF-GMGINKPNVR 100 (200)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----TTS-CTTTCCTTCC
T ss_pred CCCCEEEEEeeehhhHHhhhhhccCC--ceeEEecCCCcHHHHHHHHHHHhcccceEEEec-----chh-hhccCCCCCC
Confidence 35679999999999999999998865 67888899887665544442 2 48999999 333 3467788999
Q ss_pred EEEEe
Q 016712 248 FVVLD 252 (384)
Q Consensus 248 ~vViD 252 (384)
+||.=
T Consensus 101 ~VI~~ 105 (200)
T d1oywa3 101 FVVHF 105 (200)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88743
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=0.3 Score=38.61 Aligned_cols=77 Identities=8% Similarity=0.127 Sum_probs=59.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh---c-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.|+++.-+..++..+...+ +.+..++|+.+..+....+. . ..+|+|+|. . ...++++.+++
T Consensus 31 ~~~k~iVF~~~~~~~~~l~~~L~~~g--~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td-----~-~~~Gid~~~v~ 102 (171)
T d1s2ma2 31 QINQAIIFCNSTNRVELLAKKITDLG--YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAVN 102 (171)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT--CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTEE
T ss_pred CCCceEEEEeeeehhhHhHHhhhccc--ccccccccccchhhhhhhhhhcccCccccccchh-----H-hhhccccceeE
Confidence 45689999999999999999999875 77888898887665544443 2 489999994 2 34577889999
Q ss_pred EEEEeCccc
Q 016712 248 FVVLDEADQ 256 (384)
Q Consensus 248 ~vViDEah~ 256 (384)
+||.=+...
T Consensus 103 ~VI~~d~p~ 111 (171)
T d1s2ma2 103 VVINFDFPK 111 (171)
T ss_dssp EEEESSCCS
T ss_pred EEEecCCcc
Confidence 988665553
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.085 Score=45.49 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=22.5
Q ss_pred EEEEeCcccccCCC----hHHHHHHHHHHC--CCCCcEEE
Q 016712 248 FVVLDEADQMLSVG----FAEDVEVILERL--PQNRQSMM 281 (384)
Q Consensus 248 ~vViDEah~~~~~~----~~~~~~~il~~l--~~~~q~l~ 281 (384)
.++|||+|.++..| -..++..+++-. ..+.|+|+
T Consensus 113 IlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIg 152 (268)
T d1r6bx2 113 ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIG 152 (268)
T ss_dssp EEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEE
T ss_pred eEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEE
Confidence 67899999997643 234566666643 23567776
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.02 E-value=0.015 Score=48.24 Aligned_cols=30 Identities=7% Similarity=-0.076 Sum_probs=27.4
Q ss_pred ceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 355 VIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 355 ~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..|+++||+|++++|+.+++.|++|.++|+
T Consensus 95 ~GIa~hh~~l~~~~r~~ie~~f~~g~i~vl 124 (201)
T d2p6ra4 95 KGAAFHHAGLLNGQRRVVEDAFRRGNIKVV 124 (201)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHHTTSCCEE
T ss_pred ccHHHHHHHhhhhhHHHHHHHHhCCCceEE
Confidence 357899999999999999999999999874
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=92.97 E-value=0.16 Score=39.84 Aligned_cols=137 Identities=18% Similarity=0.094 Sum_probs=73.4
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH-HHHHHHHHhCCCCceEEEECCCC-hHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK-QVEKEFHESAPSLDTICVYGGTP-ISHQMR 216 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~-q~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 216 (384)
+.|-...|-|||.+++=-++.++ +.|.+|+++-=.+--.. --...+.... +.......+.. ......
T Consensus 5 i~vytG~GKGKTTAAlG~alRA~---------G~G~rV~ivQFlKg~~~~ge~~~~~~~~--~~~~~~~~~~~~~~~~~e 73 (157)
T d1g5ta_ 5 IIVFTGNGKGKTTAAFGTAARAV---------GHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNRE 73 (157)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHH---------HTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHHh---------cCCCEEEEEEEecCCcccchhhhhcccC--cEEEEecCCCcccCCChH
Confidence 45556679999999988888877 44778888753221100 0011122211 22111111111 000000
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~ 294 (384)
.-.. .....+.... ..+.-...++||+||+-..++.|+ ..++..+++.-|.+..+|+.--.+|+++.+++
T Consensus 74 ~~~~-------~a~~~~~~a~-~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~A 145 (157)
T d1g5ta_ 74 ADTA-------ACMAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 145 (157)
T ss_dssp HHHH-------HHHHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred HHHH-------HHHHHHHHHH-HHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhc
Confidence 0000 0011111111 223345689999999998887774 46677778877778878776666787766554
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.54 Score=37.02 Aligned_cols=74 Identities=11% Similarity=0.252 Sum_probs=57.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.|.++.-+..+.+.++..+ +.+..++|+.+..+....+ .. ..+|+|+| +.+ ..++++.++++
T Consensus 34 ~~k~iiF~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~T-----d~~-~rGiDi~~v~~ 105 (168)
T d2j0sa2 34 ITQAVIFCNTKRKVDWLTEKMREAN--FTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVW-ARGLDVPQVSL 105 (168)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGG-SSSCCCTTEEE
T ss_pred CCceEEEeeeHHHHHHHHHHhhhcc--cchhhhhhhhhHHHHHHHHHHHhcCCccEEecc-----chh-cccccccCcce
Confidence 5689999999999999999998875 5677888888776654444 23 48999999 444 45778999998
Q ss_pred EEEeCc
Q 016712 249 VVLDEA 254 (384)
Q Consensus 249 vViDEa 254 (384)
||.=++
T Consensus 106 VIn~d~ 111 (168)
T d2j0sa2 106 IINYDL 111 (168)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 875443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.63 E-value=0.0086 Score=51.40 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 341 QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 341 ~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.++.++..|.. .+||+|++++|++++++|++|++||+
T Consensus 36 ~~~~~l~~~l~~------~~hg~~~~~~R~~~~~~f~~g~~~vL 73 (248)
T d1gkub2 36 EEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGEIDHL 73 (248)
T ss_dssp HHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHH------hccCCCCHHHHHHHHHHHHhCCCeEE
Confidence 444555554442 38999999999999999999999984
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.46 E-value=0.035 Score=49.13 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
..++++++||||+|||+.+
T Consensus 48 ~~~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999965
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.28 Score=37.20 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=26.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
=-+++||..||||.- ++-.+.... ..+.+++++-|...
T Consensus 4 L~li~GpMfsGKTt~-Li~~~~~~~--------~~g~~v~~ikp~~D 41 (133)
T d1xbta1 4 IQVILGPMFSGKSTE-LMRRVRRFQ--------IAQYKCLVIKYAKD 41 (133)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHHH--------TTTCCEEEEEETTC
T ss_pred EEEEEecccCHHHHH-HHHHHHHHH--------HcCCcEEEEecccc
Confidence 357899999999984 444444432 23667999998654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.99 E-value=0.03 Score=52.21 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+|+|++||||+|||+.+
T Consensus 49 ksNILliGPTGvGKTlLA 66 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIA 66 (443)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cccEEEECCCCCCHHHHH
Confidence 369999999999999965
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.58 E-value=0.21 Score=45.31 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHhC-C-CcEEEEccCCCchhHHH
Q 016712 128 AVLEPAMQ-G-RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 128 ~~i~~i~~-g-~d~li~a~TGsGKT~~~ 153 (384)
+++..+.+ + .|.+++|++|.|||.+.
T Consensus 33 ~~~~~L~r~~k~n~llvG~~GvGKtaiv 60 (387)
T d1qvra2 33 RVIQILLRRTKNNPVLIGEPGVGKTAIV 60 (387)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred HHHHHHhcCCCCCCeEECCCCCCHHHHH
Confidence 34444442 2 47999999999999854
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.55 E-value=0.29 Score=41.30 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=15.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l 161 (384)
+++.||+|+|||.+. ..++..+
T Consensus 49 l~l~GppGtGKT~l~-~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLA-KFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHH-HHHHHHH
T ss_pred EEeECCCCCCHHHHH-HHHHHHH
Confidence 456799999999864 4444444
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.24 Score=39.18 Aligned_cols=75 Identities=11% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh---c-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.|+++.-+..+.+.+.+.+ ..+..++|+.+..+....+. . ..+|+|+| +.+ ...+++.++++
T Consensus 27 ~~k~iIF~~~~~~~~~l~~~L~~~~--~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T-----~~~-~~Gid~~~~~~ 98 (168)
T d1t5ia_ 27 FNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLF-GRGMDIERVNI 98 (168)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----SCC-STTCCGGGCSE
T ss_pred CCeEEEEEeeeecchhhhhhhcccc--ccccccccccchhhhhhhhhhhccccceeeecc-----ccc-cchhhcccchh
Confidence 4579999999999999999998865 67888999988776655443 2 48999999 322 34667888888
Q ss_pred EEEeCcc
Q 016712 249 VVLDEAD 255 (384)
Q Consensus 249 vViDEah 255 (384)
||.=+.-
T Consensus 99 vi~~~~p 105 (168)
T d1t5ia_ 99 AFNYDMP 105 (168)
T ss_dssp EEESSCC
T ss_pred hhhhhcc
Confidence 8766554
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=90.85 E-value=0.11 Score=40.01 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=49.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+.++||.|+|+.-|+++++.|++.+ +.+..++++....+.. ....+|+|+| +.+..+ ++ .++++||
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~~G--~~~~~~H~~~~~~~~~---~~~~~vlvaT-----d~~~~G-iD-~~v~~Vi 100 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVALG--INAVAYYRGLDVSVIP---TNGDVVVVAT-----DALMTG-FT-GDFDSVI 100 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHT--CEEEEECTTCCSCCCT---TSSCEEEEES-----SSSCSS-SC-CCBSEEE
T ss_pred CCCEEEEeCcHHHHHHHHHHHhccc--cchhhhhccchhhhhh---hhhcceeehh-----HHHHhc-cc-cccceEE
Confidence 5679999999999999999999875 7788888887654331 2357899999 444444 55 5777764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.77 E-value=0.11 Score=45.84 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.++++||||+|||..+
T Consensus 55 ~~lf~Gp~G~GKt~la 70 (315)
T d1qvra3 55 SFLFLGPTGVGKTELA 70 (315)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCcchHHHHH
Confidence 5789999999999865
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.63 E-value=0.09 Score=45.20 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=40.3
Q ss_pred hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 340 KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 340 ~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.++.......|...|+.+..+||+++.++|+++..+.++|+++|+
T Consensus 146 ~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~ii 190 (264)
T d1gm5a3 146 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVV 190 (264)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEE
T ss_pred HHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEE
Confidence 466677778888889999999999999999999999999999974
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=90.46 E-value=0.036 Score=42.82 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=35.8
Q ss_pred HHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 334 NALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 334 ~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
.++++..+.+++++..|...|+.+..|||+|+.++ |++|+.+|
T Consensus 39 IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~~~~~v 81 (138)
T d1jr6a_ 39 LIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPTNGDVV 81 (138)
T ss_dssp EEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTTSSCEE
T ss_pred EEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhhhhcce
Confidence 34667788999999999999999999999999654 56777665
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.41 E-value=0.17 Score=39.71 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=19.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHh
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIK 163 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~ 163 (384)
|++++.||+|+|||.. +..++..+..
T Consensus 2 k~v~ItG~~GtGKTtl-~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTL-IHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHH-HHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 6899999999999984 3445555533
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.34 E-value=0.17 Score=46.23 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHH
Q 016712 123 FPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+.|.+.+..+.... =+|++||||||||... ..++..+
T Consensus 143 ~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~ 182 (401)
T d1p9ra_ 143 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 182 (401)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHhhhhceEEEEcCCCCCccHHH-HHHhhhh
Confidence 466666666666543 4889999999999853 4455555
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.16 Score=46.46 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
..++++|.|+||+|||... ..++..+.. .+..++|+=|.-++.
T Consensus 49 ~~~H~~I~G~tGsGKT~~l-~~li~~~~~--------~g~~~iiiD~kge~~ 91 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDML 91 (433)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHH
T ss_pred ccceEEEEeCCCCcHHHHH-HHHHHHHHh--------CCCCEEEEeCChhHH
Confidence 3578999999999999864 444444433 133455555555443
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=89.74 E-value=0.22 Score=43.47 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=46.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+++++|.+|+..-++++.+.+++.+ .++.+++|.....+.........+|||+| +.... .+.+ ++.+||
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g--~~V~~l~~~~~~~e~~~~~~~~~~~~~~t-----~~~~~-~~~~-~~~~vi 104 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAG--KSVVVLNRKTFEREYPTIKQKKPDFILAT-----DIAEM-GANL-CVERVL 104 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEECCSSSCC--------CCCSEEEES-----SSTTC-CTTC-CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCcCcHhHHhhhhcCCcCEEEEe-----chhhh-ceec-CceEEE
Confidence 5679999999999999999999875 57888888877666555445568999999 44433 3344 455553
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.43 E-value=0.05 Score=44.57 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=26.2
Q ss_pred eEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 356 IIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 356 ~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+..+||+++.++|++++++|++|+++|+
T Consensus 114 ~~~~i~g~~~~~~R~~~l~~F~~~~~~vL 142 (200)
T d2fwra1 114 LIPAITHRTSREEREEILEGFRTGRFRAI 142 (200)
T ss_dssp TCCBCCSSSCSHHHHTHHHHHHHSSCSBC
T ss_pred CcceeeCCCCHHHHHHHHHHhhcCCeeee
Confidence 35678999999999999999999999885
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=88.91 E-value=0.091 Score=41.24 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++++++.|++|+|||..+
T Consensus 4 k~~~I~i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMA 22 (174)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 3578999999999999964
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=1.7 Score=35.03 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=59.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH-----HHHHHHHHHhC----C-CCceEEEE
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA-----KQVEKEFHESA----P-SLDTICVY 206 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La-----~q~~~~~~~~~----~-~~~~~~~~ 206 (384)
.|++++|++|.|||... --+...+... .......+.+++.+-...-++ -|+.++++... . .-+++.+.
T Consensus 44 ~n~lLvG~pGVGKTalv-~~LA~ri~~~-~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfI 121 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIV-EGLAQRIING-EVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHHHT-CSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCeEEEecCCcccHHHH-HHHHHHHHhC-CCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence 48999999999999864 2233333321 111112345544444444332 14444443321 1 11233322
Q ss_pred -------------CCCChHHHH-HHHhcC-CC-EEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 207 -------------GGTPISHQM-RALDYG-VD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 207 -------------g~~~~~~~~-~~~~~~-~~-IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
|+.+..... ..+.+| .. |.-+||+.+..++..+.-....+..|-|+|-+
T Consensus 122 Deih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 122 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp ETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred chHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCC
Confidence 122222222 223333 33 44578888877776655555678888888865
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.35 E-value=0.13 Score=39.41 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+++++.|++|+|||..+
T Consensus 2 ~k~I~l~G~~GsGKSTva 19 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIG 19 (169)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999865
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.32 E-value=0.13 Score=43.03 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++|+.||+|+|||..+
T Consensus 36 ~~~L~~GPpGtGKT~lA 52 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLA 52 (238)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 47999999999999965
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.26 E-value=0.16 Score=42.83 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.++++.||+|+|||.+. -.+...+
T Consensus 44 ~~lll~GppGtGKT~l~-~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL-RKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CceEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999854 3344444
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.96 E-value=0.18 Score=43.56 Aligned_cols=44 Identities=5% Similarity=-0.004 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHhhcceEEEecC--------CCChhhhhchhhhhhcCCcccC
Q 016712 341 QNVMQTAWLMLWLKVIIVSLCM--------GISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 341 ~~~~~~~~~l~~~~~~v~~~hg--------~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.++.++..|...++.+..+|| +|+..+|.+++++|++|+++|+
T Consensus 172 ~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vL 223 (286)
T d1wp9a2 172 ETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223 (286)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEE
T ss_pred HhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEE
Confidence 4555666677778888888866 6788899999999999998874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=86.67 E-value=0.19 Score=39.04 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
-++++++|++|||||..+
T Consensus 4 ~~~I~i~G~pGsGKTTia 21 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLG 21 (173)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 367899999999999865
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=86.22 E-value=0.15 Score=39.00 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHH
Q 016712 139 MIGRARTGTGKTLAF 153 (384)
Q Consensus 139 ~li~a~TGsGKT~~~ 153 (384)
++++|++|||||..+
T Consensus 5 Iii~G~pGsGKTTla 19 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.08 E-value=0.2 Score=42.23 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.||+|+|||..+
T Consensus 34 ~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999964
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.70 E-value=0.45 Score=39.35 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||...+--+...+ ..+..+++++-. +-..++.+.+..+.
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~---------~~~~~~~~is~e-~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENAC---------ANKERAILFAYE-ESRAQLLRNAYSWG 77 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH---------TTTCCEEEEESS-SCHHHHHHHHHTTS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---------Hhccccceeecc-CCHHHHHHHHHHcC
Confidence 35789999999999996544444433 235567777643 23344555555543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.69 E-value=0.14 Score=40.18 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-+++.|++|||||..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999964
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=85.65 E-value=0.31 Score=40.85 Aligned_cols=45 Identities=16% Similarity=-0.051 Sum_probs=39.7
Q ss_pred hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 340 KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 340 ~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.++..+....|...++.+..+||.++..+|.++.+++++|+++|+
T Consensus 118 ~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iv 162 (233)
T d2eyqa3 118 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 162 (233)
T ss_dssp HHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEE
Confidence 466667777777789999999999999999999999999999874
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.62 E-value=0.7 Score=39.44 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=29.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.|+=+.+.|+.|+|||..++..+.... . .+..++||---..+-
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q-~--------~g~~~vyIDtE~~~~ 101 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANAQ-A--------AGGVAAFIDAEHALD 101 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHHH-H--------TTCEEEEEESSCCCC
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHHh-c--------CCCEEEEEECCccCC
Confidence 356789999999999997755554433 1 356778776544443
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.42 E-value=0.2 Score=41.72 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++|+.||+|+|||..+
T Consensus 36 ~~~Ll~GPpG~GKTtla 52 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLA 52 (239)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47999999999999865
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.36 E-value=0.032 Score=46.28 Aligned_cols=93 Identities=14% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCCCEEEEEecCHHHHH--------HHHHHH-HHhCCCCceEEEECCCChHHH---HHHHhc-CCCEEEECchhHHHHHH
Q 016712 171 GRNPLCLVLAPTRELAK--------QVEKEF-HESAPSLDTICVYGGTPISHQ---MRALDY-GVDAVVGTPGRVIDLIK 237 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~--------q~~~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~l~~~l~ 237 (384)
..+.|+.||+|..+-.. +.++.+ +.+++++++.+++|..+..+. +..+.+ ..+|+|+| ..+
T Consensus 27 ~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaT-----tVi- 100 (206)
T d1gm5a4 27 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST-----TVI- 100 (206)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS-----SCC-
T ss_pred HcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEe-----hhh-
Confidence 35778999999764322 223333 335567888889998765443 344444 48999999 333
Q ss_pred ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 238 RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 238 ~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
...++.+++.++|+..+++..-. ++..+.-+.
T Consensus 101 E~GIDip~a~~iii~~a~~fgls----qlhQlrGRv 132 (206)
T d1gm5a4 101 EVGIDVPRANVMVIENPERFGLA----QLHQLRGRV 132 (206)
T ss_dssp CSCSCCTTCCEEEBCSCSSSCTT----HHHHHHHTS
T ss_pred hccccccCCcEEEEEccCCccHH----HHHhhhhhe
Confidence 34678999999999999984322 344444444
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=84.87 E-value=0.19 Score=38.99 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-+++.|++|+|||..+
T Consensus 4 lI~i~G~~GsGKTTva 19 (176)
T d2bdta1 4 LYIITGPAGVGKSTTC 19 (176)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999964
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.84 E-value=1 Score=40.99 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=39.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccC---CCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG---RGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~---~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
..+||.|..|||||.+..-=++..+........ .-....+|+|+=|+.=|.++.+++.+
T Consensus 17 g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~ 78 (485)
T d1w36b1 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (485)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHH
Confidence 468999999999998765555555543211100 01123599999999888888777654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.51 E-value=0.15 Score=40.03 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
|.+++.|++|+|||..+
T Consensus 8 K~I~i~G~~GsGKTTla 24 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLV 24 (192)
T ss_dssp EEEEEECCTTSHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=83.27 E-value=0.27 Score=38.39 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
|+++++|++|+|||.+.
T Consensus 1 k~I~liG~~GsGKsTi~ 17 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLA 17 (161)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999864
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=83.05 E-value=1.1 Score=37.98 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|+=+.+.|+.|+|||..++..+... .. .+..++|+----.+-.+ .++.++-+..
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~~a-qk--------~g~~v~yiDtE~~~~~~---~a~~~Gvd~d-------------- 110 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVAQA-QK--------AGGTCAFIDAEHALDPV---YARALGVNTD-------------- 110 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH-HH--------TTCCEEEEESSCCCCHH---HHHHTTCCGG--------------
T ss_pred ceEEEEecCCccchHHHHHHHHHHH-Hh--------CCCEEEEEECCccCCHH---HHHHhCCCch--------------
Confidence 3567899999999999665444433 22 25567777654333222 3344442222
Q ss_pred HHHhcCCCEEEECchhHHH---HHHccCCCCCCccEEEEeCccccc
Q 016712 216 RALDYGVDAVVGTPGRVID---LIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~---~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
+++|..|....+ ++.. .+.-..+++||||=+-.+.
T Consensus 111 -------~i~~~~~~~~E~~~~~~~~-l~~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 111 -------ELLVSQPDNGEQALEIMEL-LVRSGAIDVVVVDSVAALT 148 (268)
T ss_dssp -------GCEEECCSSHHHHHHHHHH-HHTTTCCSEEEEECTTTCC
T ss_pred -------hEEEEcCCCHHHHHHHHHH-HHhcCCCcEEEEecccccc
Confidence 234443333222 2211 1122457899999887665
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=82.40 E-value=0.17 Score=39.59 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=17.0
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
.+|.-++++|++|||||.++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45677889999999999965
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=82.13 E-value=0.23 Score=41.98 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+|+.||+|+|||..+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46999999999999854
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.01 E-value=0.39 Score=40.22 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++.+++.||.|+|||...
T Consensus 29 ~~~i~i~G~~G~GKTsLl 46 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSII 46 (283)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CCEEEEEcCCCCcHHHHH
Confidence 467899999999999753
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=81.50 E-value=0.84 Score=34.95 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=15.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l 161 (384)
+.++|+.|||||.. +--++..+
T Consensus 5 i~itG~~GSGKTTL-~~~L~~~l 26 (170)
T d1np6a_ 5 LAFAAWSGTGKTTL-LKKLIPAL 26 (170)
T ss_dssp EEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEcCCCCCHHHH-HHHHHHHH
Confidence 67899999999983 33444443
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=81.21 E-value=0.34 Score=37.62 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
..+=++++|++|||||..+
T Consensus 2 ~~kiI~l~G~~GsGKsTva 20 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456788999999999865
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=80.91 E-value=0.47 Score=37.77 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~ 154 (384)
.|..+++.||+|||||..+-
T Consensus 2 ~~~riil~G~pGSGKsT~a~ 21 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAP 21 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHH
Confidence 36778999999999999653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.52 E-value=0.45 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+++++.||+|||||..+
T Consensus 1 m~I~i~G~pGSGKsT~a 17 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQA 17 (182)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999965
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=80.11 E-value=0.37 Score=37.67 Aligned_cols=42 Identities=7% Similarity=0.149 Sum_probs=25.3
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
..+.+++++||++...... ......+.+.+......++++..
T Consensus 97 ~~~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~il~~~h 138 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSEEEEECC
T ss_pred hcCCCceeecCCCccchhh-HHHHHHHHHHhccCCCEEEEEEc
Confidence 3567899999997654432 33444555555554556666544
|