Citrus Sinensis ID: 016720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSHFSHPSSSELNDSRSLTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccccccccccccccccccEcEEEEccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
merllyssspthftkthlkfspfrsrlspidspklaFFCSLrseskrvgsvsckyenpshfshpssselndsrsltphrvdspnesmpssnFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLihpvfapaafaTFQTaartggpaaaAVGSRLIRTELLSSAWTGFFAGClhtlsgpdhlaalaplsigrtRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGikeasevptpcvalengecdvsvyealdnpavgkkkiGFATFATgivhglqpdaLMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Flexible Loop (DISEMBL)
merllyssspthftkthlkfspfrsrlspIDSPKLAFFCSLRSESKRVGSVSCKyenpshfshpssselndsRSLTPHrvdspnesmpssnFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVirtwgtrvVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Low Complexity Region (SEG)
MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSHFSHPSSSELNDSRSLTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVfapaafatfqtaartggpaaaaVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGllflllKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDalmmvlpalalpSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Disordered region (IsUnstruct)
*********************************KLAFFCSL***********************************************************TGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYS**
Disordered Region (DISOPRED)
**********************************************************************************************************IAAGTLVALSAAIVFLIHPVFAPAAFA*******************LIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEV*****************************IGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Disordered Region (DISEMBL)
**********THFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYEN********************************SNFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAA*********VGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Disordered Region (DISPRO)
********SPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENP********************************NFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTP************************KKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSHFSHPSSSELNDSRSLTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q07404	228	Urease accessory protein	N/A	no	0.453	0.763	0.270	6e-09

>sp|Q07404|UREH_BACSB Urease accessory protein UreH OS=Bacillus sp. (strain TB-90) GN=ureH PE=3 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 155 RTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRM-ESAAVGALWGCGHDAGQVIF 213
           + +LLS    GF  G  H +  PDH+ A++ +     ++  S+  G  WG GH +  +IF
Sbjct: 3   QVDLLSILTLGFVLGIKHAME-PDHVIAVSTIVCQSKKLWRSSLAGVFWGIGHTSTLLIF 61

Query: 214 GLLFLLLKDRLHIEVIRTWGTR---VVGMTLLVIGAMGIKEASEVPTPCVALENGECDVS 270
           G+  +L+K ++  E    W      +VG+ L+  G   I    +        E+    + 
Sbjct: 62  GMTIILMKKKISQE----WSMSLEFLVGIILVYFGISAILSLKKTH------EHSHSRLH 111

Query: 271 VYEALDNPAVGKKKIGFA-TFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGT 329
           ++   D+P    K I +  +   GI+HGL   A M++L    +     G  +++ F  GT
Sbjct: 112 LHT--DHPIYTYKGIPYVKSLFIGIIHGLAGSAAMVLLTMSTVEKAWEGLLYILFFGAGT 169

Query: 330 VVAMGSYTVFIG 341
           V+ M S+T  IG
Sbjct: 170 VLGMLSFTTLIG 181

Probably facilitates nickel incorporation. May constitute a multicomponent high-affinity nickel transporter. Not essential for the expression of catalytically active urease.
Bacillus sp. (strain TB-90) (taxid: 36824)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
449458620	377	PREDICTED: uncharacterized protein LOC10	0.981	1.0	0.713	1e-145
255584954	371	Urease accessory protein ureH, putative	0.966	1.0	0.755	1e-143
225428041	382	PREDICTED: urease accessory protein UreH	0.963	0.968	0.699	1e-142
147790360	282	hypothetical protein VITISV_009850 [Viti	0.729	0.992	0.875	1e-135
356529803	282	PREDICTED: urease accessory protein ureH	0.726	0.989	0.882	1e-132
167857805	380	chloroplast zebra-necrosis protein [Nico	0.986	0.997	0.670	1e-129
357473773	380	High-affinity nickel-transport family pr	0.942	0.952	0.712	1e-128
356544922	371	PREDICTED: uncharacterized protein LOC10	0.932	0.964	0.743	1e-127
358248277	379	uncharacterized protein LOC100818218 [Gl	0.911	0.923	0.735	1e-127
388515857	383	unknown [Lotus japonicus]	0.981	0.984	0.697	1e-126

>gi|449458620|ref|XP_004147045.1| PREDICTED: uncharacterized protein LOC101219983 [Cucumis sativus] gi|449489637|ref|XP_004158371.1| PREDICTED: uncharacterized LOC101219983 [Cucumis sativus]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/384 (71%), Positives = 308/384 (80%), Gaps = 7/384 (1%)

Query: 1   MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSH 60
           M+RLLYS SPT   K HL   P   RL  ID  KL F  S RSE   V S S + ENP  
Sbjct: 1   MDRLLYSPSPTPL-KPHLNRLPHLPRLPRIDPSKLHFPSSTRSEFAGVHSFSSRNENPIL 59

Query: 61  FSHPSSSELNDSRSLTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIV 120
            S       N   SL     DS + S+P   F +QI    +G +KA    T +AL  AI+
Sbjct: 60  SSSSLPISSNTLLSLN----DSRDGSVPKPQFHQQIEDFPSGERKAKITKTFMALCVAIL 115

Query: 121 FLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHL 180
            LI PVFAP+AFA   +AA TGGP+AA  G R  R+ELLSSAWTGFFAGCLHTLSGPDHL
Sbjct: 116 VLIQPVFAPSAFA--YSAATTGGPSAATFGGRFFRSELLSSAWTGFFAGCLHTLSGPDHL 173

Query: 181 AALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMT 240
           AALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGL+FLLLKDRLHIE+IRTWGTRVVG+T
Sbjct: 174 AALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLIFLLLKDRLHIEIIRTWGTRVVGIT 233

Query: 241 LLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQP 300
           LLVIGA+GI+EA+EVPTPCVAL+NGE DVS+YEAL+NP+ GKKKIGFATFATGIVHGLQP
Sbjct: 234 LLVIGALGIREATEVPTPCVALDNGEGDVSIYEALENPSEGKKKIGFATFATGIVHGLQP 293

Query: 301 DALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTW 360
           DALMM+LPALALPSR+AGAAFL+MFL+GTVVAMGSYTVFIGSC+QALK+R+PRITEKLTW
Sbjct: 294 DALMMILPALALPSRVAGAAFLVMFLVGTVVAMGSYTVFIGSCTQALKERVPRITEKLTW 353

Query: 361 ASSLVAIALGFAILISQFFGYSLY 384
           A+S +AIALGFAILISQ+FG+SLY
Sbjct: 354 AASSIAIALGFAILISQYFGFSLY 377

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584954|ref|XP_002533189.1| Urease accessory protein ureH, putative [Ricinus communis] gi|223527002|gb|EEF29195.1| Urease accessory protein ureH, putative [Ricinus communis]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/384 (75%), Positives = 315/384 (82%), Gaps = 13/384 (3%)

Query: 1   MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSH 60
           MERLLYSSSPT   K  LK + F  R   I S KL F    R + +RV SVSCK++NPS+
Sbjct: 1   MERLLYSSSPTPL-KFSLKSTSFLPR---IHSLKLGFGPLTRPDFRRVNSVSCKHDNPSN 56

Query: 61  FSHPSSSELNDSRSLTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIV 120
              P +S    S S  P     P  S P S+F  QI       +KA   GT + LSA I+
Sbjct: 57  ---PLTSVKLPSLSPLP-----PTGSTPKSHFNNQIENGAPLQQKAATLGTFLVLSAIIM 108

Query: 121 FLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHL 180
           FLI PVFAP AFATFQTAA TGG  AAAVGS+L+RTELLSSAWTGF AGCLHTLSGPDHL
Sbjct: 109 FLIPPVFAPPAFATFQTAAETGG-TAAAVGSKLMRTELLSSAWTGFLAGCLHTLSGPDHL 167

Query: 181 AALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMT 240
           AALAPLSIGR+RMESA VGALWGCGHDAGQVIFGLLFLLLKDRLHIE+IRTWGTRVVG T
Sbjct: 168 AALAPLSIGRSRMESAVVGALWGCGHDAGQVIFGLLFLLLKDRLHIEIIRTWGTRVVGFT 227

Query: 241 LLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQP 300
           LLVIGAMGI+EASEVP PCVALENGECDVSVYEAL++P VGKKKIGFATFATGIVHGLQP
Sbjct: 228 LLVIGAMGIREASEVPAPCVALENGECDVSVYEALESPTVGKKKIGFATFATGIVHGLQP 287

Query: 301 DALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTW 360
           DALMMVLPALALPSRLAGAAFL+MFL+GTVVAMGSYTVF+GSCSQALKDR+PRITEKLTW
Sbjct: 288 DALMMVLPALALPSRLAGAAFLVMFLVGTVVAMGSYTVFLGSCSQALKDRVPRITEKLTW 347

Query: 361 ASSLVAIALGFAILISQFFGYSLY 384
            SSLVAIALG AI++SQFFG+SLY
Sbjct: 348 ISSLVAIALGLAIIVSQFFGFSLY 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428041|ref|XP_002279051.1| PREDICTED: urease accessory protein UreH-like [Vitis vinifera]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/396 (69%), Positives = 307/396 (77%), Gaps = 26/396 (6%)

Query: 1   MERLLYSSSPTHFTKTHLKFSPFRSRLSP-----IDSPKLAFFCSLRSESKRVGSVSCKY 55
           MERL+YS SP     + ++  PF            DS +L F            S SC +
Sbjct: 1   MERLIYSYSPI---PSKVRLKPFSPLSPIPSLPPFDSSRLCF-----------SSFSCTH 46

Query: 56  ENPSHFSHPSSSEL-------NDSRSLTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIA 108
               + S P SS L         S S +  + +SP+ES+   + L QI    +  +KA  
Sbjct: 47  LKRLNASTPHSSFLCSLAPLLASSSSSSAFQAESPDESVSPPSSLPQIVAGASQQRKAAT 106

Query: 109 AGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFA 168
           AGT+  LSA  + LIHPV A  AFATFQTAA+TGGPAAA VG +LIRTELLSSAWTGFFA
Sbjct: 107 AGTITLLSALTILLIHPVLAQPAFATFQTAAKTGGPAAATVGGQLIRTELLSSAWTGFFA 166

Query: 169 GCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEV 228
           GCLHTLSGPDHLAALAPLS+GR+RMESAAVGALWGCGHDAGQ+IFGLLFLLLKDRLHIEV
Sbjct: 167 GCLHTLSGPDHLAALAPLSVGRSRMESAAVGALWGCGHDAGQMIFGLLFLLLKDRLHIEV 226

Query: 229 IRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFA 288
           IRTWGTRVVG TLLVIGAMGI+EASEVPTPCVA+ENGECDV  YEAL+NP   KKKIGFA
Sbjct: 227 IRTWGTRVVGFTLLVIGAMGIREASEVPTPCVAVENGECDVGTYEALENPTAKKKKIGFA 286

Query: 289 TFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALK 348
           TFATGIVHGLQPDALMMVLPALALPSRLAGAAFL+MFLLGTVVAM SYTVFIGSCSQALK
Sbjct: 287 TFATGIVHGLQPDALMMVLPALALPSRLAGAAFLVMFLLGTVVAMASYTVFIGSCSQALK 346

Query: 349 DRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY 384
           +R+PRITEKLTWASSL+AIALGFAILISQFFG+SLY
Sbjct: 347 ERVPRITEKLTWASSLIAIALGFAILISQFFGFSLY 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790360|emb|CAN67732.1| hypothetical protein VITISV_009850 [Vitis vinifera]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/280 (87%), Positives = 261/280 (93%)

Query: 105 KAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWT 164
           +A  AGT+  LSA  + LIHPV A  AFATFQTAA+TGGPAAA VG +LIRTELLSSAWT
Sbjct: 3   QAATAGTITLLSALTILLIHPVLAQPAFATFQTAAKTGGPAAATVGGQLIRTELLSSAWT 62

Query: 165 GFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRL 224
           GFFAGCLHTLSGPDHLAALAPLS+GR+RMESAAVGALWGCGHDAGQ+IFGLLFLLLKDRL
Sbjct: 63  GFFAGCLHTLSGPDHLAALAPLSVGRSRMESAAVGALWGCGHDAGQMIFGLLFLLLKDRL 122

Query: 225 HIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKK 284
           HIEVIRTWGTRVVG TLLVIGAMGI+EASEVPTPCVA+ENGECDV  YEAL+NP   KKK
Sbjct: 123 HIEVIRTWGTRVVGFTLLVIGAMGIREASEVPTPCVAVENGECDVGTYEALENPTAKKKK 182

Query: 285 IGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCS 344
           IGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFL+MFLLGTVVAM SYTVFIGSCS
Sbjct: 183 IGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLVMFLLGTVVAMASYTVFIGSCS 242

Query: 345 QALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY 384
           QALK+R+PRITEKLTWASSL+AIALGFAILISQFFG+SLY
Sbjct: 243 QALKERVPRITEKLTWASSLIAIALGFAILISQFFGFSLY 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529803|ref|XP_003533477.1| PREDICTED: urease accessory protein ureH-like [Glycine max]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/280 (88%), Positives = 262/280 (93%), Gaps = 1/280 (0%)

Query: 106 AIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTG 165
           AI A T   LSA ++ LI P FAPAAFATFQ AA+T GPAAAAVG +LIRTELLSSAWTG
Sbjct: 3   AITARTFAILSALVLLLIQPAFAPAAFATFQNAAKTSGPAAAAVGGKLIRTELLSSAWTG 62

Query: 166 FFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH 225
           FFAGCLHTLSGPDHLAALAPLSIGRT+MESAAVGALWGCGHDAGQVIFGL+FLLLKDRLH
Sbjct: 63  FFAGCLHTLSGPDHLAALAPLSIGRTQMESAAVGALWGCGHDAGQVIFGLIFLLLKDRLH 122

Query: 226 IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALD-NPAVGKKK 284
           IE+I+TWGTRVVG+TLLVIGAMGIKEASEVP  CVALENGECDVSVYE+ D NP VGKKK
Sbjct: 123 IEIIQTWGTRVVGLTLLVIGAMGIKEASEVPILCVALENGECDVSVYESRDSNPVVGKKK 182

Query: 285 IGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCS 344
           IGFATFATGIVHGL+PDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCS
Sbjct: 183 IGFATFATGIVHGLEPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCS 242

Query: 345 QALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY 384
           +ALKDR+PRITEKLTWASSLVAIALGFAI+ SQFFG+SLY
Sbjct: 243 EALKDRVPRITEKLTWASSLVAIALGFAIITSQFFGFSLY 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167857805|gb|ACA03877.1| chloroplast zebra-necrosis protein [Nicotiana benthamiana]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/385 (67%), Positives = 299/385 (77%), Gaps = 6/385 (1%)

Query: 1   MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSH 60
           ME+L+YS++    +K HLK SP   R+  +D   L          + + S+S K  + S 
Sbjct: 1   MEKLIYSTTTPFPSKLHLKPSPSLPRIHLVDF-NLPSSLLSLESRRVINSLSVKCLHDSS 59

Query: 61  FSHPSSSELNDSRSLTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIV 120
           FS   +   +    ++P     PN S    + LK+I +R +   K ++A ++V LSA  V
Sbjct: 60  FSVTQNGH-DKKPFMSP---GFPNGSGSGPDLLKRIGERISQQNKVLSASSIVLLSAVFV 115

Query: 121 FLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHL 180
             IHPV    A+A+FQ AA+TGGP AAAVGSRL+R ELLSSAWTGFFAGCLHTLSGPDHL
Sbjct: 116 MFIHPVIVSPAYASFQAAAKTGGPVAAAVGSRLVRNELLSSAWTGFFAGCLHTLSGPDHL 175

Query: 181 AALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMT 240
           AALAPLSIGRTRMESAAVGALWGCGHDAGQ+IFGLLFLLLKDRL IEVIRTWGTRVVG+T
Sbjct: 176 AALAPLSIGRTRMESAAVGALWGCGHDAGQLIFGLLFLLLKDRLQIEVIRTWGTRVVGLT 235

Query: 241 LLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVG-KKKIGFATFATGIVHGLQ 299
           LLVIGAMGI+EASE  T  VALEN E DVSVY+ +D P +G KKK+GFATFATGIVHGLQ
Sbjct: 236 LLVIGAMGIREASEAHTLYVALENCESDVSVYKGIDAPVIGKKKKVGFATFATGIVHGLQ 295

Query: 300 PDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLT 359
           PDALM++LPALALPSRLAGAAFL MFL+GTV+AMGSYT FIGSCSQALKDRIPRITEKLT
Sbjct: 296 PDALMIILPALALPSRLAGAAFLGMFLVGTVMAMGSYTAFIGSCSQALKDRIPRITEKLT 355

Query: 360 WASSLVAIALGFAILISQFFGYSLY 384
           WASSLVAI LG +I+ISQFFG+SLY
Sbjct: 356 WASSLVAIGLGLSIIISQFFGFSLY 380

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473773|ref|XP_003607171.1| High-affinity nickel-transport family protein, putative [Medicago truncatula] gi|355508226|gb|AES89368.1| High-affinity nickel-transport family protein, putative [Medicago truncatula] gi|388496636|gb|AFK36384.1| unknown [Medicago truncatula]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/376 (71%), Positives = 296/376 (78%), Gaps = 14/376 (3%)

Query: 15  KTHLK---FSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSHFSHPSSSELND 71
            T+LK   F P + R    +S +  FF S RS  K V S+S   ENPS F   +   +  
Sbjct: 13  NTNLKPFTFLPLKPRF---NSARFNFFPSNRSSFKWVASISRNNENPSPFLSATPLFVKP 69

Query: 72  SRSLTPHRVDSPN---ESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFA 128
           + SL+ H  +S N   ES P    + +I        K +   T V LSA +V LI PVFA
Sbjct: 70  NNSLS-HVANSDNPIIESQP----VNKINATDFKKPKGLTVQTFVILSALVVLLIQPVFA 124

Query: 129 PAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSI 188
           PAAFATF  AA+T GPA  AVG +LIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSI
Sbjct: 125 PAAFATFANAAKTSGPATTAVGGKLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSI 184

Query: 189 GRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMG 248
           GRTR ESA VGALWGCGHDAGQ+IFGL+FLLLKDRLHIE+IRTWGTRVVG+TLLVIGAMG
Sbjct: 185 GRTRTESALVGALWGCGHDAGQLIFGLIFLLLKDRLHIEIIRTWGTRVVGLTLLVIGAMG 244

Query: 249 IKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLP 308
           IKEASEV  P VALENGE  V  YE+LDNP  GKKKIGFATFATGIVHGLQPDALMMVLP
Sbjct: 245 IKEASEVSAPIVALENGESSVGAYESLDNPVAGKKKIGFATFATGIVHGLQPDALMMVLP 304

Query: 309 ALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIA 368
           ALALPSR++GAAFLIMFL+GTVVAMGSYTVFIGSCSQALKDR+PRITEKLTWASSL+AIA
Sbjct: 305 ALALPSRVSGAAFLIMFLVGTVVAMGSYTVFIGSCSQALKDRVPRITEKLTWASSLIAIA 364

Query: 369 LGFAILISQFFGYSLY 384
           LGFAI+ISQFFG+SLY
Sbjct: 365 LGFAIIISQFFGFSLY 380

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544922|ref|XP_003540896.1| PREDICTED: uncharacterized protein LOC100799220 [Glycine max]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 276/371 (74%), Positives = 301/371 (81%), Gaps = 13/371 (3%)

Query: 15  KTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSHFSHPSSSELNDSRS 74
            T+LK  PF S L   DS +   F S R       S+S K+E P   S      L     
Sbjct: 13  NTNLK--PF-SLLPRFDSVRFNPFSSTRCS---FTSISSKHETPPPLSSSPPKTLPP--- 63

Query: 75  LTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFAT 134
           L+P  +   + S+P S   + +        KAI A T   LS+ ++ LI P FAPAAFAT
Sbjct: 64  LSPSPLIHFHASVPPS---QPLTPNNFQNPKAITARTFAILSSLVLLLIQPAFAPAAFAT 120

Query: 135 FQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRME 194
           FQ AA+TGGPAAAAVG +LIRTELL+SAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRME
Sbjct: 121 FQNAAKTGGPAAAAVGGKLIRTELLTSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRME 180

Query: 195 SAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASE 254
           SAAVGALWGCGHDAGQVIFGL+FLLLKDRLHIE+IRTWGTRVVG+TLLVIGAMGIKEASE
Sbjct: 181 SAAVGALWGCGHDAGQVIFGLIFLLLKDRLHIEIIRTWGTRVVGLTLLVIGAMGIKEASE 240

Query: 255 VPTPCVALENGECDVSVYEALD-NPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALP 313
           VPTPCVALENGECDVSVYE+ D NP VGKKKIGFATFATGIVHGLQPDALMMVLPALALP
Sbjct: 241 VPTPCVALENGECDVSVYESRDSNPVVGKKKIGFATFATGIVHGLQPDALMMVLPALALP 300

Query: 314 SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAI 373
           SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCS+ALKDR+PRITEKLTWASSL+AIALGFAI
Sbjct: 301 SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSEALKDRVPRITEKLTWASSLIAIALGFAI 360

Query: 374 LISQFFGYSLY 384
           +ISQFFG+SLY
Sbjct: 361 IISQFFGFSLY 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248277|ref|NP_001239853.1| uncharacterized protein LOC100818218 [Glycine max] gi|255639907|gb|ACU20246.1| unknown [Glycine max]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/356 (73%), Positives = 291/356 (81%), Gaps = 6/356 (1%)

Query: 34  KLAFFCSLRSES--KRVGSVSCKYENPSHFSH--PSSSELNDSRSLTPHRVDSPNESMPS 89
           +  F  S RS S  KR+ S+ C++ NPS FS   P  +  N   +       S   ++ S
Sbjct: 25  RFNFSPSTRSHSHLKRLSSICCQHANPSPFSSSTPFLASSNHPINFPSFSSSSDPSTLES 84

Query: 90  SNFLKQIAKRTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAV 149
            + L QI        K I A TLV LSA  + LI P  APAAFATFQTAA+TGGPAAAA 
Sbjct: 85  HS-LNQIKTGAFPKPKVITARTLVILSALAMILIQPTIAPAAFATFQTAAKTGGPAAAAA 143

Query: 150 GSR-LIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDA 208
             R LI TELLSSAWTGF AGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDA
Sbjct: 144 VGRKLIHTELLSSAWTGFLAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDA 203

Query: 209 GQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECD 268
           GQV+FGL+FL+LKD+LHIE+IRTWGTRVVG+TLL+IGAMGI+EASEV  P VALE+GECD
Sbjct: 204 GQVLFGLIFLILKDQLHIEIIRTWGTRVVGLTLLIIGAMGIREASEVHAPIVALESGECD 263

Query: 269 VSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLG 328
           V+VYE+LDNP VGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFL+G
Sbjct: 264 VNVYESLDNPTVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLIG 323

Query: 329 TVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSLY 384
           TV+AMGSYTVFIGSCSQALKDR+PRITEKLTW SSL+AIALGFAI+ISQFFG+SLY
Sbjct: 324 TVIAMGSYTVFIGSCSQALKDRVPRITEKLTWVSSLIAIALGFAIIISQFFGFSLY 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515857|gb|AFK45990.1| unknown [Lotus japonicus]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 272/390 (69%), Positives = 301/390 (77%), Gaps = 13/390 (3%)

Query: 1   MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRSESKRVGSVSCKYENPSH 60
           M+RLL SSSP      +LK  PF +R     S +  FF S RS  KR  S+ C ++NPS 
Sbjct: 1   MDRLLSSSSPPSLKTLNLKPFPFLNR---SQSARFNFFPSTRSYLKRGTSICCNHQNPSP 57

Query: 61  FSHPSSSELNDSRSLTPHRVDSPNESMPSSNFLKQIAKRT------TGGKKAIAAGTLVA 114
           FS  S    +   +  P    SP+ S P  N L QI+  T      +   KA+ A TLV 
Sbjct: 58  FSSSSPILASKQPNNLPSLSFSPDRSSPEPNSLTQISTGTGTGTGASQKPKALTARTLVI 117

Query: 115 LSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTL 174
           LSA +  LI P  APAAFATFQTAA     A  AVG +LIRTELLSSAWTGFFAGCLHTL
Sbjct: 118 LSALVTILIQPAIAPAAFATFQTAAN----AGGAVGGKLIRTELLSSAWTGFFAGCLHTL 173

Query: 175 SGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGT 234
           SG DHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGL+FL+LKDRLHIE+IRTWGT
Sbjct: 174 SGRDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLIFLILKDRLHIEIIRTWGT 233

Query: 235 RVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGI 294
           RVVG TLLVIGAMGI+EASE   P VALENGE DV+VYE+LDNP   +KKIGFATFATGI
Sbjct: 234 RVVGFTLLVIGAMGIREASEAAAPSVALENGEGDVNVYESLDNPKTREKKIGFATFATGI 293

Query: 295 VHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRI 354
           VHGLQPDALMMVLPALALPSRLAGAAFLIMFL GTV+AM SYTVFIGSCS+ALKD++PRI
Sbjct: 294 VHGLQPDALMMVLPALALPSRLAGAAFLIMFLFGTVIAMESYTVFIGSCSEALKDKVPRI 353

Query: 355 TEKLTWASSLVAIALGFAILISQFFGYSLY 384
           TEKLTW SSL+AIALGFAI+ISQFFG+SLY
Sbjct: 354 TEKLTWTSSLIAIALGFAIIISQFFGFSLY 383

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2059889	372	AT2G16800 [Arabidopsis thalian	0.955	0.986	0.562	2.6e-102

TAIR|locus:2059889 AT2G16800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 219/389 (56%), Positives = 267/389 (68%)

Query:     1 MERLLYSSSPTHFTKTHLKFSPFRSRLSPIDSPKLAFF-CSLRSESKRVGSVSCKY-ENP 58
             M+RLL   S      +  +  P    L  + S  L+ F  S R ES+R+ S+SC + +NP
Sbjct:     1 MDRLLQPPSSHSIAPSKFQSRPSPLLLHRLHSTNLSTFPSSRRLESRRISSISCFFRQNP 60

Query:    59 SHFSHPSSSELNDSRS--LTPHRVDSPNESMPSSNFLKQIAKRTTGGKKAIAAGTLVALS 116
             S  + P    LN S +  +   + D+   S P+  F+++I   +   +K I+AG ++ +S
Sbjct:    61 SPDTSPG---LNQSSNFLIASSQTDA---SKPNPGFIQRIVS-SFEQRKTISAGMVILVS 113

Query:   117 AAIVFLIHPVXXXXXXXXXXXXXXXXXXXXXXVGSRLIRTELLSSAWTGFFAGCLHTLSG 176
             A    L++P+                      VG +L+RTE+L+SAWTGFFAGCLHTLSG
Sbjct:   114 AIAALLLNPILVPPAFASFQTATNSGGAAV--VGGKLLRTEVLTSAWTGFFAGCLHTLSG 171

Query:   177 PDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGXXXXXXKDRLHIEVIRTWGTRV 236
             PDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQ+IFG      KDRLHIEVIRTWGTRV
Sbjct:   172 PDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQLIFGLLFLLLKDRLHIEVIRTWGTRV 231

Query:   237 VGMTLLVIGAMGIKEASEVPTPCVA-LENGECDVSVYEALDNPAVGKKKIGFATFATGIV 295
             VG+TLLVIGAMGIKEASE+P PCV  LENGE D          ++ KKKIGFATFATGIV
Sbjct:   232 VGLTLLVIGAMGIKEASEMPEPCVVTLENGETD--------EKSLKKKKIGFATFATGIV 283

Query:   296 HGLQPDXXXXXXXXXXXXSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRIT 355
             HGLQPD            SR+AGA+FLIMFL+GTV+AMGSYTVFIGSCS+ALK+++PRIT
Sbjct:   284 HGLQPDALMMVLPALALPSRIAGASFLIMFLIGTVIAMGSYTVFIGSCSEALKEKVPRIT 343

Query:   356 EKLTWASSLVAIALGFAILISQFFGYSLY 384
             EKLTWASSLVAI LG AI++SQFFG+SLY
Sbjct:   344 EKLTWASSLVAIGLGLAIIVSQFFGFSLY 372


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      384       344   0.00097  116 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  212 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.29u 0.10s 26.39t   Elapsed:  00:00:01
  Total cpu time:  26.29u 0.10s 26.39t   Elapsed:  00:00:01
  Start:  Mon May 20 23:02:52 2013   End:  Mon May 20 23:02:53 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0015099 "nickel cation transmembrane transporter activity" evidence=ISS

GO:0015675 "nickel cation transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
pfam03824	278	pfam03824, NicO, High-affinity nickel-transport pr	8e-28
pfam13386	199	pfam13386, DsbD_2, Family description	0.001

>gnl|CDD|217749 pfam03824, NicO, High-affinity nickel-transport protein

 Score =  110 bits (276), Expect = 8e-28
 Identities = 59/279 (21%), Positives = 80/279 (28%), Gaps = 53/279 (18%)

Query: 158 LLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLF 217
           LLS A   F  G LH L  PDH  A+   S  +       VG L+  GH +   +  LL 
Sbjct: 1   LLSLAILAFLLGVLHAL-DPDHGKAIDIRSYMQAGKTPLKVGILFSLGHSSVVGLVALLL 59

Query: 218 LLLKDRLHI-----EVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVY 272
            L    +       E+  T GT V G  LL+IG   +    E+      L  G       
Sbjct: 60  ALGVKLVLRLPSLQEIGSTIGTLVSGSFLLIIGLGNLLLLRELRHLFRKLRRGRAPEPDL 119

Query: 273 EA-LDNP-----------------------------------------AVGKKKIGFATF 290
           EA L                                             +G    G    
Sbjct: 120 EAALQKRGLLSRILGPRLVTKHWHMYPVGGLGFDTATEVALLAPSPSALIGLSFDGILVL 179

Query: 291 ATGIVHGLQPDALMMVLPALALPSRLAG---AAFLIMFLLGTVVAMGSYTVFIGSCSQAL 347
                 G++P      +  LA             L M + GT + +      I +     
Sbjct: 180 PALFAAGMRPCDGADGVLMLAAYLWAFLGGRKLVLNMSITGTSITVALLAGLIETLGLLA 239

Query: 348 KDRIPRIT--EKLTWASSLVAIALGFAILISQFFGYSLY 384
           K      T    L W S  +   +G  I    + G SL 
Sbjct: 240 KKLAGSGTFWSALGWLSLEIVGYIGVLIFALTWLGASLV 278

High affinity nickel transporters involved in the incorporation of nickel into H2-uptake hydrogenase and urease enzymes. Essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Alcaligenes eutrophus is thought to be an integral membrane protein with seven transmembrane helices. The family also includes a cobalt transporter. Length = 278

>gnl|CDD|222093 pfam13386, DsbD_2, Family description

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 211 VIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVS 270
            + GLL  +L     ++ +R     ++G+ LL++G   +     +    +          
Sbjct: 51  ALAGLLGSVLSLSGQLQGLRGVLGILMGLLLLLLGLYLLGLGGLLKLERLG--------K 102

Query: 271 VYEALDNPAVGKKKIGFATFATGIVHGLQPDAL--MMVLPALALPSRLAGAAFLIMFLLG 328
                  P + K K     F  G++ GL P  L    +L A A  S L GA  ++ F LG
Sbjct: 103 GLWRRLGPLLKKLKSPPGAFLLGLLWGLLPCGLVYSALLLAAASGSALQGALLMLAFGLG 162

Query: 329 TVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFA 372
           T+ AM    +  G  SQ L+ R+ R+       + ++ I LG  
Sbjct: 163 TLPAMLLAGLLAGFLSQKLRKRLLRL-------AGVLLIVLGIL 199

Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	99.95
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	99.87
COG2836	232	Uncharacterized conserved protein [Function unknow	99.87
TIGR00802	280	nico high-affinity nickel-transporter, HoxN/HupN/N	99.78
COG2215	303	ABC-type uncharacterized transport system, permeas	99.74
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	99.64
COG3376	342	HoxN High-affinity nickel permease [Inorganic ion	99.61
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.38
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	99.22
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	98.91
PF13795	151	HupE_UreJ_2: HupE / UreJ protein	98.47
PF11139	214	DUF2910: Protein of unknown function (DUF2910); In	98.12
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	97.71
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.36
PRK09304	207	arginine exporter protein; Provisional	97.36
PRK11469	188	hypothetical protein; Provisional	97.34
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	96.86
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	96.82
PRK10958	212	leucine export protein LeuE; Provisional	96.75
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	96.36
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	96.18
PRK10229	206	threonine efflux system; Provisional	96.11
PF04955	180	HupE_UreJ: HupE / UreJ protein; InterPro: IPR00703	95.93
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	95.34
PF09948	191	DUF2182: Predicted metal-binding integral membrane	95.1
COG1971	190	Predicted membrane protein [Function unknown]	94.32
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	93.26
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	93.23
COG2370	201	HupE Hydrogenase/urease accessory protein [Posttra	92.85
COG2119	190	Predicted membrane protein [Function unknown]	92.79
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	92.66
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	92.62
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	92.46
TIGR00948	177	2a75 L-lysine exporter.	91.72
COG2215	303	ABC-type uncharacterized transport system, permeas	90.54
PF09930	224	DUF2162: Predicted transporter (DUF2162); InterPro	89.67
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	88.89
PF01914	203	MarC: MarC family integral membrane protein; Inter	86.45
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	85.36
COG4280	236	Predicted membrane protein [Function unknown]	85.17
PRK10621	266	hypothetical protein; Provisional	81.2
COG1279	202	Lysine efflux permease [General function predictio	81.11
COG5486	283	Predicted metal-binding integral membrane protein	80.35

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=99.95  E-value=1.6e-26  Score=224.74  Aligned_cols=224  Identities=16%  Similarity=0.176  Sum_probs=168.3

Q ss_pred             hHHHHHHHHHHHhhhhcCCCCCchhhhhh--h-ccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q 016720          157 ELLSSAWTGFFAGCLHTLSGPDHLAALAP--L-SIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWG  233 (384)
Q Consensus       157 ~lls~~~~gflLG~lHaL~gPDHLAAi~~--L-s~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~  233 (384)
                      ..+..+..+|++|++|+++ |||.++++.  + +++++.++++.+++.|+++|+.++++++++.+.+++.++.|....|+
T Consensus        12 ~~~~l~~~~f~yG~~HAlg-PGHGKavi~sYlv~~~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~~~l   90 (279)
T PRK10019         12 NAWFFIPSAILLGALHGLE-PGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAEPWL   90 (279)
T ss_pred             hHHHHHHHHHHHHHHHhcC-CCcchHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            3567778899999999995 999999655  3 44556689999999999999999999999988888888777899999


Q ss_pred             HHHHHHHHHHHHHHHhHhhhcCC--------CCcccc--cC-Ccccc---c--------cccccCCccccc---------
Q 016720          234 TRVVGMTLLVIGAMGIKEASEVP--------TPCVAL--EN-GECDV---S--------VYEALDNPAVGK---------  282 (384)
Q Consensus       234 eivvGvlLIvLGl~~L~~~~~~~--------~~~~~~--~~-g~~~~---h--------~h~h~~~~~~~k---------  282 (384)
                      |.++|++++++|+|++++..+..        .+.|.|  ++ +++++   |        .|+|..++++..         
T Consensus        91 e~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~~~~~a~~~r~~~  170 (279)
T PRK10019         91 QLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIKRRF  170 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHHHhhccchhhhhh
Confidence            99999999999999998754321        111111  00 00100   0        001100101100         


Q ss_pred             ---ccccchhHHHHHhhccchH-H-HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHH
Q 016720          283 ---KKIGFATFATGIVHGLQPD-A-LMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEK  357 (384)
Q Consensus       283 ---~~~~~s~f~iGilhGL~P~-g-lLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~  357 (384)
                         +....+.+.+|+.+|+.|| | +++++.+.+++..+.|++|.++|++||.++|.+++++.....++..+|.+..+++
T Consensus       171 ~~~~~~~~~~l~igl~~Gl~PCpgAl~VLL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~  250 (279)
T PRK10019        171 DGREVTNGQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTL  250 (279)
T ss_pred             cccccccchhhHHHHHhccCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence               0112234799999999998 6 5568999999999999999999999999999999999877676666666555555


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHhhcc
Q 016720          358 L---TWASSLVAIALGFAILISQFFGY  381 (384)
Q Consensus       358 L---~~~s~~vsI~lGll~Ilr~~~g~  381 (384)
                      +   +.+++++++++|++++++.+.|.
T Consensus       251 ~~~~p~~s~~l~i~~G~~~~~~~~~~~  277 (279)
T PRK10019        251 ARRAPYFSSLLIGLVGVYMGVHGFMGI  277 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4   49999999999999999988663

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=99.87  E-value=3.4e-21  Score=177.85  Aligned_cols=191  Identities=24%  Similarity=0.275  Sum_probs=140.4

Q ss_pred             HHHHHHHHhhhhcCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHH----HHHHHHHHH
Q 016720          161 SAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIE----VIRTWGTRV  236 (384)
Q Consensus       161 ~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie----~lq~w~eiv  236 (384)
                      ++..|++ |..||+.||++++.......+++   .+ ..+.|++||.++|.++|++++++|+.+...    .++.+..++
T Consensus         2 a~~~Gl~-gs~hC~~mCg~~~~~~~~~~~~~---~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~   76 (199)
T PF13386_consen    2 AFLLGLL-GSLHCIGMCGPIALALSLSQPKR---WL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGIL   76 (199)
T ss_pred             HHHHHHH-HhhhHHHhHHHHHHHHhccCccc---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3567766 77799999999999887666432   23 589999999999999999999999988632    455566667


Q ss_pred             HHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccc-cccchhHHHHHhhccchHH--HHHHHHHhhcC
Q 016720          237 VGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKK-KIGFATFATGIVHGLQPDA--LMMVLPALALP  313 (384)
Q Consensus       237 vGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~-~~~~s~f~iGilhGL~P~g--lLaLL~Alal~  313 (384)
                      +|++++.+|++.++.... +... ..++   .  .+++  .....++ +..++.|.+|+++|+.||+  |.++..|.+.+
T Consensus        77 ~~~~~l~~gl~~l~~~~~-~~~~-~~~~---~--~~~~--~~~~~~~~~~~~~~~~lG~l~gllPCg~~y~~l~~A~~s~  147 (199)
T PF13386_consen   77 LGLLGLFLGLRLLGGPRL-PKLG-RLGH---G--LARR--LQPLLRKLKGPWGAFLLGFLNGLLPCGPVYFALALAAASG  147 (199)
T ss_pred             HHHHHHHHHHHHHhccch-hhHH-hccH---H--HHHH--hHHHHHhcCCccHHHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence            777777777777643211 1000 0000   0  0010  0011222 4668999999999999999  56777788889


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016720          314 SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFA  372 (384)
Q Consensus       314 s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll  372 (384)
                      |+..|+++|.+|++||++.|..+..+..+..+       +.+++..++++.+.+++|++
T Consensus       148 s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~-------~~~~~~~r~~g~~~i~~G~~  199 (199)
T PF13386_consen  148 SPLYGALLMLAFGLGTLPALLLAGLLAGKLSR-------RLRRRLLRLAGVLLIILGIY  199 (199)
T ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999998887643       45577778999999999874

>COG2836 Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=1.1e-20  Score=177.64  Aligned_cols=211  Identities=17%  Similarity=0.137  Sum_probs=156.8

Q ss_pred             HHhHHHHHHHHHHHhhhhcCCCCCchhhhhhhccCCch-hHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHH-HHHHH
Q 016720          155 RTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTR-MESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIE-VIRTW  232 (384)
Q Consensus       155 ~~~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~-~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie-~lq~w  232 (384)
                      +.+.+. ++....+|.-||++|||.+.......+..+. .+.++..++|++||.++|.++|.+++.+|..+... .+|.+
T Consensus         3 ~~~~l~-~~~~g~lg~gHC~gMCGGi~~afs~~~~~~~~~~~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~   81 (232)
T COG2836           3 SISFLG-IFLLGLLGGGHCLGMCGGIVLAFSLLIPSKVSSSRLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGV   81 (232)
T ss_pred             chhHHH-HHHHHHhcCccHHHhcchHHHHHHHhccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667 5555577999999999999866655443222 22489999999999999999999999999777633 78899


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcCC-CCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHH--HHHHHHH
Q 016720          233 GTRVVGMTLLVIGAMGIKEASEVP-TPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDA--LMMVLPA  309 (384)
Q Consensus       233 ~eivvGvlLIvLGl~~L~~~~~~~-~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~g--lLaLL~A  309 (384)
                      +.++.|++||++|++.+-+..-.+ ...++.-+    ...+++...-...+.+..++.+.+|++||+.||+  |-+++.|
T Consensus        82 l~i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~----~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~lPCGlVYs~l~~A  157 (232)
T COG2836          82 LFIIAGALLIALGLYLLARGGMWSGALKLPFIG----GFLWRLLKPIRLLPLKPLPGALFLGMLWGLLPCGLVYSALAYA  157 (232)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhHHhhchhcc----hHHHHhhhhhhccccCcchHHHHHHHHhcccchHHHHHHHHHH
Confidence            999999999999999863311000 00000000    0011111100122233467899999999999999  6688999


Q ss_pred             hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          310 LALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQ  377 (384)
Q Consensus       310 lal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~  377 (384)
                      +..+|.++|+++|++|++||.|.|..++.+.++.+.       ..|+++.+.++.+.+++|++.+++.
T Consensus       158 ~~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~-------~~r~~~~rl~~gl~~v~g~~~l~~g  218 (232)
T COG2836         158 LSTGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSK-------SSRKRLNRLSGGLMVVVGLIGLWKG  218 (232)
T ss_pred             HHcCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888764       5678888999999999998887764

>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family

Probab=99.78  E-value=7.7e-19  Score=169.53  Aligned_cols=209  Identities=19%  Similarity=0.229  Sum_probs=138.5

Q ss_pred             HHHHHHhhhhcCCCCCchhhhhhhccC--CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc--HHHHHH----HHH
Q 016720          163 WTGFFAGCLHTLSGPDHLAALAPLSIG--RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH--IEVIRT----WGT  234 (384)
Q Consensus       163 ~~gflLG~lHaL~gPDHLAAi~~Ls~~--r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~--ie~lq~----w~e  234 (384)
                      .+|+.+|++|++ ||||++|+++++++  ++.+++..+|+.|++||+++++++.+++......+.  .+.+++    .++
T Consensus         2 ~la~~lGlrHA~-DaDHiaAId~~trkl~~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~iGt   80 (280)
T TIGR00802         2 LLAYVLGLRHAF-DADHIAAIDNTTRKLMQQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGLIGT   80 (280)
T ss_pred             hHHHHhhhhccC-CcchhhhhHHHHHHHhhcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccceeeH
Confidence            578999999999 59999999999875  345688999999999999999998877765533332  234666    456


Q ss_pred             HHHHHHHHHHHHHHhH------hhhc-CCCCcccccCCccccccccccC------CcccccccccchhHHHHHhhccchH
Q 016720          235 RVVGMTLLVIGAMGIK------EASE-VPTPCVALENGECDVSVYEALD------NPAVGKKKIGFATFATGIVHGLQPD  301 (384)
Q Consensus       235 ivvGvlLIvLGl~~L~------~~~~-~~~~~~~~~~g~~~~h~h~h~~------~~~~~k~~~~~s~f~iGilhGL~P~  301 (384)
                      .++|.+|+++|+.++.      +..+ .++..  .++++.+... +...      .+..+..+++|.+|.+|+++||+.|
T Consensus        81 ~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~--~~~~~l~~~l-~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD  157 (280)
T TIGR00802        81 LVSALFLLIIALLNLVILRNLLRLFRKVRRGI--YDEADLEALL-GNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD  157 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhhHHHhh-hccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence            8999999999999882      2111 11110  0000000000 0000      0112235678999999999999985


Q ss_pred             -----HHHHHHHHhhc--CChHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 016720          302 -----ALMMVLPALAL--PSRLAGAAFLIMFLLGTVVAMG----SYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALG  370 (384)
Q Consensus       302 -----glLaLL~Alal--~s~~~g~~yml~FglGTilaM~----~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lG  370 (384)
                           +++++..+.+.  -+++..+.|.++|..|..+.-.    .+...|++.++...+|. .++..++.++.++++++|
T Consensus       158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L~DT~Dg~lM~~aY~wAf~~P~rkl-yYN~tiT~iSv~vA~~IG  236 (280)
T TIGR00802       158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMALFDTADSLFMVGAYGWAFSDPLRKL-YYNITITGASVAVALFIG  236 (280)
T ss_pred             hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHHhcCccHHHHHHHHHHHhcCcccee-eeehhHHHHHHHHHHHHH
Confidence                 23333333332  2367889999999988554322    23344555444333333 688899999999999999


Q ss_pred             HHHHHH
Q 016720          371 FAILIS  376 (384)
Q Consensus       371 ll~Ilr  376 (384)
                      ...+++
T Consensus       237 ~ie~l~  242 (280)
T TIGR00802       237 GIELLG  242 (280)
T ss_pred             HHHHHH
Confidence            988765

This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=99.74  E-value=4.7e-16  Score=151.78  Aligned_cols=221  Identities=16%  Similarity=0.196  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCchhhhhh--h-ccCCchhHHHHHhHHhhhhH--HHHHHHHHHHHHHHhhhhcHHHHHHH
Q 016720          158 LLSSAWTGFFAGCLHTLSGPDHLAALAP--L-SIGRTRMESAAVGALWGCGH--DAGQVIFGLLFLLLKDRLHIEVIRTW  232 (384)
Q Consensus       158 lls~~~~gflLG~lHaL~gPDHLAAi~~--L-s~~r~~~~a~~lGl~wglGH--s~tvvlLGll~~llg~~l~ie~lq~w  232 (384)
                      .+..+..+|+.|.+|+++ |||-+++..  + ..+.+-+|.+.+++.-++-|  +..+++.++..++.+..+..+..+.|
T Consensus        54 ~w~li~~SflyGvlHAlg-PGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~  132 (303)
T COG2215          54 GWTLIPLSFLYGVLHALG-PGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPW  132 (303)
T ss_pred             HHHHHHHHHHHHHHhccC-CCcchHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHH
Confidence            567778899999999995 999999887  2 34444689999999999999  55555555555565677778899999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcC---CCCcc-----------cccCCccccccccccCCcccccc-cccchhHHHHHhhc
Q 016720          233 GTRVVGMTLLVIGAMGIKEASEV---PTPCV-----------ALENGECDVSVYEALDNPAVGKK-KIGFATFATGIVHG  297 (384)
Q Consensus       233 ~eivvGvlLIvLGl~~L~~~~~~---~~~~~-----------~~~~g~~~~h~h~h~~~~~~~k~-~~~~s~f~iGilhG  297 (384)
                      +|+++.++++.+|+|++++..+.   ++|.+           +|+|+.++.+.|+|..++....+ ...+..+.+|+.-|
T Consensus       133 lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l~~G  212 (303)
T COG2215         133 LELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGLTGG  212 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHhcccccHHHHHHHHHHhc
Confidence            99999999999999999876431   11111           11111111122233222222212 22335699999999


Q ss_pred             cchH--HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH---HHHHHHHHHHHHHHHHHHH
Q 016720          298 LQPD--ALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPR---ITEKLTWASSLVAIALGFA  372 (384)
Q Consensus       298 L~P~--glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~---l~~~L~~~s~~vsI~lGll  372 (384)
                      |-||  ++.+++-+...+....|+++++.|++||.++..+++.+....-+... |...   ..+++..+++++...++++
T Consensus       213 LrPCpgAi~VLlfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~-~~~g~~~~~~~~~~~~~l~~gli~l~  291 (303)
T COG2215         213 LRPCPGAIFVLLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAV-RLSGFRTLAKRISYIVSLLGGLIGLY  291 (303)
T ss_pred             CccCcHHHHHHHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9987  46788888899999999999999999999986666555544333222 2222   3344455555555555555


Q ss_pred             HHHHHhhc
Q 016720          373 ILISQFFG  380 (384)
Q Consensus       373 ~Ilr~~~g  380 (384)
                      +-+..+++
T Consensus       292 ~g~~~l~~  299 (303)
T COG2215         292 FGLHLLLG  299 (303)
T ss_pred             HHHHHHHH
Confidence            55444443

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=99.64  E-value=1.9e-14  Score=139.68  Aligned_cols=186  Identities=19%  Similarity=0.186  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcH----HHHHH--
Q 016720          158 LLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHI----EVIRT--  231 (384)
Q Consensus       158 lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~i----e~lq~--  231 (384)
                      ++.++.++|++|++|+++ |||++++..--.. +.+++.+.|+.|++||++++.+.++++.++...+..    +..+.  
T Consensus         1 ~l~ll~laf~~G~~HAl~-PgH~kai~~~~~~-~~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~~   78 (282)
T PF03824_consen    1 LLSLLLLAFLYGLLHALG-PGHGKAIIASYLL-SSRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSAV   78 (282)
T ss_pred             CHHHHHHHHHHHHHHccC-CChHHHHHHHHHh-hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhHH
Confidence            367788999999999995 9999999653222 234567889999999999999999999887666542    12222  


Q ss_pred             HHHH-HHHHHHHHHHHHHhHhhhc-C-------CC--Cc--ccccC--Cccc---------ccccccc--C---------
Q 016720          232 WGTR-VVGMTLLVIGAMGIKEASE-V-------PT--PC--VALEN--GECD---------VSVYEAL--D---------  276 (384)
Q Consensus       232 w~ei-vvGvlLIvLGl~~L~~~~~-~-------~~--~~--~~~~~--g~~~---------~h~h~h~--~---------  276 (384)
                      |.++ .+.++++.+|.+.++++.. .       ++  +.  +.+++  .+.+         .+++++.  +         
T Consensus        79 ~~~~~~~~llv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~g~~~  158 (282)
T PF03824_consen   79 GLLVSGSFLLVIGIGNWLLLRRLRHLHRHLRRGHQHAHSHDHAHHHHGDHGHFHHPHHHHHSHHHHHDHVGHLFGLGFDT  158 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhcccccccCCCccccccccccccccccc
Confidence            2233 4455555566665543211 0       00  00  00000  0000         0000000  0         


Q ss_pred             --C-----ccc----ccccccchhHHHHHhhccchHH-HH-HHHHHhhcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 016720          277 --N-----PAV----GKKKIGFATFATGIVHGLQPDA-LM-MVLPALALPSRLAGAAFLIMFLL-GTVVAMGSYTVFIGS  342 (384)
Q Consensus       277 --~-----~~~----~k~~~~~s~f~iGilhGL~P~g-lL-aLL~Alal~s~~~g~~yml~Fgl-GTilaM~~vt~l~g~  342 (384)
                        .     +..    .........+.+|+..|+.||. .+ +++.+...+....+......+++ |+.+++.++..+...
T Consensus       159 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~~~~~~g~~~~~~~~l~g~~i~~~~~~~~~~~  238 (282)
T PF03824_consen  159 ASCGHLHGLSAAALPGAPISWILLLGLGFAAGMVPCPGALGVLLFALYLGAFWAGRAAVLAMSLGGMAITVALFAGLAVL  238 (282)
T ss_pred             cchhcccccccccccCCCchHHHHHHHHHHhhccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0     000    1112223578999999999974 43 44445555555668888889999 888877777766655


Q ss_pred             hhH
Q 016720          343 CSQ  345 (384)
Q Consensus       343 ~~~  345 (384)
                      ...
T Consensus       239 ~~~  241 (282)
T PF03824_consen  239 ARL  241 (282)
T ss_pred             HHH
Confidence            443

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]

Probab=99.61  E-value=8.4e-16  Score=149.31  Aligned_cols=215  Identities=22%  Similarity=0.280  Sum_probs=138.7

Q ss_pred             HhHHHHHHHHHHHhhhhcCCCCCchhhhhhhccC--CchhHHHHHhHHhhhhHHHHHHHHHHHHHHH----hhhhcHHHH
Q 016720          156 TELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIG--RTRMESAAVGALWGCGHDAGQVIFGLLFLLL----KDRLHIEVI  229 (384)
Q Consensus       156 ~~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~--r~~~~a~~lGl~wglGHs~tvvlLGll~~ll----g~~l~ie~l  229 (384)
                      ..+++...+++.+|.+|++ |+||+||+++.+|+  ++.++...+|..+.+||++.++++.+++...    ++++  +.+
T Consensus        46 ~~~~~~~~laYtfGlRHA~-DADHIAAIDN~tRKLmQqgK~p~~VG~fFSlGHStVViL~~l~~~~~~~~~~n~~--~~l  122 (342)
T COG3376          46 ASLLGAGLLAYTLGLRHAF-DADHIAAIDNVTRKLMQQGKNPLGVGFFFSLGHSTVVILLSLALAAASKAFKNRL--PML  122 (342)
T ss_pred             hhHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHhCCCCCceeeEEEecCchHHHHHHHHHHHHHHHHHHhcc--HHH
Confidence            3488888999999999999 69999999998874  2345678999999999999999998887644    4554  366


Q ss_pred             HHHH----HHHHHHHHHHHHHHHhHh------h-hcCCCCcccccCCcccccccc-ccC----CcccccccccchhHHHH
Q 016720          230 RTWG----TRVVGMTLLVIGAMGIKE------A-SEVPTPCVALENGECDVSVYE-ALD----NPAVGKKKIGFATFATG  293 (384)
Q Consensus       230 q~w~----eivvGvlLIvLGl~~L~~------~-~~~~~~~~~~~~g~~~~h~h~-h~~----~~~~~k~~~~~s~f~iG  293 (384)
                      ++++    +.++|.+|+.+|+.++.-      . ++.+...  .++++-+.-..+ ..-    .+..+-..+.|.+|.+|
T Consensus       123 ~~iGglIgTlVSg~FLllig~lNliiLi~l~k~f~~~~~~~--~~e~ele~ll~~rGll~R~f~~lFrlvtksWhmypvG  200 (342)
T COG3376         123 EEIGGLIGTLVSGFFLLLIGLLNLIILVGLYKIFKKVRRSD--QQEAELEELLTSRGLLNRFFGRLFRLVTKSWHMYPVG  200 (342)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHhcCcHHHHHHHHHHHHhcCcceEeehh
Confidence            6665    468999999999887731      1 1111100  000000000000 000    01112235668999999


Q ss_pred             HhhccchH-H----HHHHHHHhhc--CChHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHhhhhhhHHHHHHHHHH
Q 016720          294 IVHGLQPD-A----LMMVLPALAL--PSRLAGAAFLIMFLLGTVVAMG----SYTVFIGSCSQALKDRIPRITEKLTWAS  362 (384)
Q Consensus       294 ilhGL~P~-g----lLaLL~Alal--~s~~~g~~yml~FglGTilaM~----~vt~l~g~~~~~l~~r~~~l~~~L~~~s  362 (384)
                      +++||+.| +    ++++..+.+.  -+++.-+.|.++|..|..+.-.    .+...++|.+....||. .++..++.++
T Consensus       201 FLFGLGFDTATEiaLL~isa~~a~~gi~~~~il~fPiLFaaGM~L~DtlDg~fM~~AYgWAF~~P~RKi-yYNiTiTaiS  279 (342)
T COG3376         201 FLFGLGFDTATEIALLAISAASAAIGIPIYAILVFPILFAAGMSLLDTLDGFFMNGAYGWAFSSPLRKI-YYNITITAIS  279 (342)
T ss_pred             hhhccccchHHHHHHHHHhhHhhhcCCChHHHHHHHHHHHccchhhhccccHHHhhhhhhhhcChhhhH-hhheeHHHHH
Confidence            99999985 2    4444332222  2467788999999988433211    12234444443333333 6777888999


Q ss_pred             HHHHHHHHHHHHHH
Q 016720          363 SLVAIALGFAILIS  376 (384)
Q Consensus       363 ~~vsI~lGll~Ilr  376 (384)
                      -.++.++|....++
T Consensus       280 V~iA~~IG~iE~Lg  293 (342)
T COG3376         280 VLIALFIGGIELLG  293 (342)
T ss_pred             HHHHHHHhHHHHHH
Confidence            99999999887664

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.38  E-value=1.6e-11  Score=130.55  Aligned_cols=205  Identities=14%  Similarity=0.071  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHHHhhhhcCCCCCchhhhhhhccC--CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHH-HHHH
Q 016720          157 ELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIG--RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVI-RTWG  233 (384)
Q Consensus       157 ~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~--r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~l-q~w~  233 (384)
                      .++.++..|+++.+.||+-.+-++....-+..+  .++++.+..++.|.+|..++|.++|+++.++|..+. ..+ +.|.
T Consensus       168 ~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~-~~~q~~~~  246 (571)
T PRK00293        168 SLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQ-AALQHPYV  246 (571)
T ss_pred             HHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHH
Confidence            455666667777777777544454332222222  245678899999999999999999999999998764 223 4688


Q ss_pred             HHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccc--hHH----HHHHH
Q 016720          234 TRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQ--PDA----LMMVL  307 (384)
Q Consensus       234 eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~--P~g----lLaLL  307 (384)
                      .++.|++++++|+.++.. .+.+-+.. ..+   ...  . ..  ...+.+.....|.+|++.|+.  ||.    +.++.
T Consensus       247 ~~~~~~l~v~lgL~~~G~-~~l~lp~~-~~~---~~~--~-~~--~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~  316 (571)
T PRK00293        247 LIGLSILFVLLALSMFGL-FTLQLPSS-LQT---RLT--L-LS--NRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALL  316 (571)
T ss_pred             HHHHHHHHHHHHHHHhcc-eeccCcHH-HHH---Hhh--h-hh--hcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            889999999999987632 12211100 000   000  0 00  011233456899999999997  996    22444


Q ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          308 PALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILIS  376 (384)
Q Consensus       308 ~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr  376 (384)
                      .+++.++++.|.+.|++|++|+.+.|++++...+...    .|..++.++++++.+++.+++|++++-+
T Consensus       317 ~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~l----pk~g~wm~~~k~~~G~~ll~~~~~ll~~  381 (571)
T PRK00293        317 YIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLL----PKSGPWMNQVKTAFGFVLLALPVFLLER  381 (571)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566788999999999999999888888887765432    2333455678889999999999997654

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=99.22  E-value=1.1e-09  Score=102.11  Aligned_cols=193  Identities=22%  Similarity=0.264  Sum_probs=136.2

Q ss_pred             HHHhhhhcCCCCCchhhhhh----hccC--CchhH----HHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHH
Q 016720          166 FFAGCLHTLSGPDHLAALAP----LSIG--RTRME----SAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTR  235 (384)
Q Consensus       166 flLG~lHaL~gPDHLAAi~~----Ls~~--r~~~~----a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~ei  235 (384)
                      |+.|..-.++ |+-+..+--    +..+  +++++    .+..++.|..|=.+++.++|.....+++.+.  ..++|...
T Consensus         2 f~aGll~~~s-PC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~--~~~~~~~~   78 (211)
T PF02683_consen    2 FLAGLLSSFS-PCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFG--QISPWLYI   78 (211)
T ss_pred             hHHHHHHhcC-cHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            5677888885 776554321    1211  11222    5899999999999999999999999998874  67889999


Q ss_pred             HHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc--chHH---HH-HHHHH
Q 016720          236 VVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL--QPDA---LM-MVLPA  309 (384)
Q Consensus       236 vvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~g---lL-aLL~A  309 (384)
                      +.|++++++|+..+.... .+... +.          +...+.+.+++......|..|++.|+  .||.   +. ++..+
T Consensus        79 i~g~~~i~~Gl~~l~~~~-~~~l~-~~----------~~~~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a  146 (211)
T PF02683_consen   79 IAGVLLILFGLSLLGLFE-IPFLS-RP----------RLGLRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALA  146 (211)
T ss_pred             HHHHHHHHHHHHHHHhhc-chhhh-hh----------hhhhhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            999999999998774322 11000 00          00000011122234689999999999  4884   23 33444


Q ss_pred             hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016720          310 LALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAIL  374 (384)
Q Consensus       310 lal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~I  374 (384)
                      .+.+++..+..++++|++|..+.+.+++...+...+ ..++..+..++++++.+++.+++|++++
T Consensus       147 ~~~~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~-~~~~~~~~~~~i~~~~G~lli~~g~~~l  210 (211)
T PF02683_consen  147 ASSGSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLR-RLRKLRRWSRWIKRISGILLIALGLYLL  210 (211)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999999999999988888776553 2335567889999999999999999886

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2e-07  Score=88.62  Aligned_cols=196  Identities=22%  Similarity=0.268  Sum_probs=139.7

Q ss_pred             HHHHHHHHhhhhcCCCCCchhhhhh----hc--cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 016720          161 SAWTGFFAGCLHTLSGPDHLAALAP----LS--IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGT  234 (384)
Q Consensus       161 ~~~~gflLG~lHaL~gPDHLAAi~~----Ls--~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~e  234 (384)
                      ..+.+|..|.+=.++ |.=+..+-.    +.  ..+++++.....+.+-+|=++++..+|.....++.-+.  ..++|..
T Consensus        12 ~~~~aflaGlls~lS-PCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~--~~~~~l~   88 (220)
T COG0785          12 SILLAFLAGLLSFLS-PCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLP--LNRLYLR   88 (220)
T ss_pred             HHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            357788889888887 664433322    11  12236788888999999999999999999999998875  4445999


Q ss_pred             HHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccc--hHH---HHHHHH-
Q 016720          235 RVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQ--PDA---LMMVLP-  308 (384)
Q Consensus       235 ivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~--P~g---lLaLL~-  308 (384)
                      ++.|+.++++|+ .+....+.+-..  -   +.        ......+.......|.+|+..|+.  ||.   +..++. 
T Consensus        89 ~i~gi~li~~Gl-~~l~~~~~~~~~--~---~~--------~~~~~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~l  154 (220)
T COG0785          89 YIAGILLILLGL-LFLGVLRLPLLL--R---FA--------RFQLKGKSVTALGAFLLGLLFALGWTPCIGPILGSILAL  154 (220)
T ss_pred             HHHHHHHHHHHH-HHHHHHhhhhhh--h---cc--------hhhhccCCCcchhHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            999999999994 433322211000  0   00        000011234456899999999994  895   333333 


Q ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016720          309 ALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAI  373 (384)
Q Consensus       309 Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~  373 (384)
                      +...++.+.++.+|.+|++|......+++.+.+...++..++..|..+.++.+++++.+.+|+++
T Consensus       155 aa~~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l  219 (220)
T COG0785         155 AASTGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL  219 (220)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445578999999999999999999999999988774344556788899999999999999875

>PF13795 HupE_UreJ_2: HupE / UreJ protein

Probab=98.47  E-value=1.1e-06  Score=79.15  Aligned_cols=141  Identities=20%  Similarity=0.264  Sum_probs=103.8

Q ss_pred             HHHhhhhcCCCCCchhhhhhhcc---CCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q 016720          166 FFAGCLHTLSGPDHLAALAPLSI---GRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLL  242 (384)
Q Consensus       166 flLG~lHaL~gPDHLAAi~~Ls~---~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLI  242 (384)
                      +-+|..|.+.|.||+.-+..+.-   .+++|+.++.-..+++||++|..+-..-..        +....|.|.++.+.++
T Consensus         2 ~~~G~~HIl~G~DHlLFll~L~l~~~~~~~~~ll~~vTaFTlgHSiTL~L~~~~~v--------~~~~~~VE~lIAlSI~   73 (151)
T PF13795_consen    2 FKLGIEHILTGYDHLLFLLALVLPFLFRSWKRLLKLVTAFTLGHSITLALAALGIV--------SVPSRLVEALIALSIA   73 (151)
T ss_pred             hHhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------CCChHHHHHHHHHHHH
Confidence            35799999999999888777643   456889999999999999999887544332        2347889999999999


Q ss_pred             HHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHHHHHH
Q 016720          243 VIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFL  322 (384)
Q Consensus       243 vLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~ym  322 (384)
                      ..++++++...                          ...+.+.+.++..|++||++.+.++.   ....++ ..-..-+
T Consensus        74 ~~A~~nl~~~~--------------------------~~~~~~~~v~~~FGLiHGlGFA~~l~---~~~~~~-~~~~~~L  123 (151)
T PF13795_consen   74 FVALENLRRPK--------------------------RSARRRWLVAFGFGLIHGLGFASALK---ELGLPS-DQLLLAL  123 (151)
T ss_pred             HHHHHHhhccc--------------------------cccccHHHHHHHHHHHHHHHHHHHHH---HhCCCc-chHHHHH
Confidence            99999982100                          01122345789999999998887664   233333 2356778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 016720          323 IMFLLGTVVAMGSYTVFIGSCS  344 (384)
Q Consensus       323 l~FglGTilaM~~vt~l~g~~~  344 (384)
                      +.|.+|.-+++..+..+.-...
T Consensus       124 l~FNlGVElgQl~iv~~~l~l~  145 (151)
T PF13795_consen  124 LSFNLGVELGQLAIVLLVLPLL  145 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999988776655433

>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed

Probab=98.12  E-value=0.00034  Score=65.57  Aligned_cols=188  Identities=17%  Similarity=0.145  Sum_probs=117.1

Q ss_pred             cCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc------HHHHHHHHHHHHHHHHHHHHH
Q 016720          173 TLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH------IEVIRTWGTRVVGMTLLVIGA  246 (384)
Q Consensus       173 aL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~------ie~lq~w~eivvGvlLIvLGl  246 (384)
                      +++ |.++....-+-.++   |....++.|-+|..++++.+|+++.+..+.+.      .+....|.+++.|+.++++|.
T Consensus         9 a~s-P~~i~~~vlll~~~---r~~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~   84 (214)
T PF11139_consen    9 ALS-PLPIVIAVLLLSRP---RPRRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAV   84 (214)
T ss_pred             HhC-hHHHHHHHHHhcCC---CccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHH
Confidence            365 77777766543322   22456889999999999999999987755543      246678899999999999999


Q ss_pred             HHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccc-h-HH--HHHHHHHhhc--CChHHHHH
Q 016720          247 MGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQ-P-DA--LMMVLPALAL--PSRLAGAA  320 (384)
Q Consensus       247 ~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~-P-~g--lLaLL~Alal--~s~~~g~~  320 (384)
                      +..+++....++.      ..+    +..   ...++....+.+.+|++-|+. | +.  |++.+...+.  .++.....
T Consensus        85 ~~~~~~~~~~~~~------~~~----~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~  151 (214)
T PF11139_consen   85 RVWRRRPRPDPPS------RPP----RWL---ARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVV  151 (214)
T ss_pred             HHhhcccccCCCC------Cch----hhh---hhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence            8876541111000      000    000   011233456788999988873 2 22  3322222222  23566777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          321 FLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPR----ITEKLTWASSLVAIALGFAILISQ  377 (384)
Q Consensus       321 yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~----l~~~L~~~s~~vsI~lGll~Ilr~  377 (384)
                      +.+.|.+-......+....+...-++.++..++    ++++-..+..++..++|++++...
T Consensus       152 ~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G  212 (214)
T PF11139_consen  152 ALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLGDG  212 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence            888888776665555555555444455444444    444556788999999999998764

Currently no function for this family is known.

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=97.71  E-value=0.0031  Score=57.25  Aligned_cols=160  Identities=19%  Similarity=0.222  Sum_probs=97.5

Q ss_pred             HHHhHHhhhhHHHHHHHHHHHHHHHhhhh-c-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCcccccccc
Q 016720          196 AAVGALWGCGHDAGQVIFGLLFLLLKDRL-H-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYE  273 (384)
Q Consensus       196 ~~lGl~wglGHs~tvvlLGll~~llg~~l-~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~  273 (384)
                      .+.++...+|+.++..+...+..+.-..+ + .+.++.+..++.++.|+.+|...+++..+.....       .      
T Consensus        23 ~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~-------~------   89 (191)
T PF01810_consen   23 FKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSST-------Q------   89 (191)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhh-------h------
Confidence            35577788888888888877665443232 2 4678889999999999999999887643321100       0      


Q ss_pred             ccCCcccccccccchhHHHHHhhcc-chHHH---HHHHHHhhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 016720          274 ALDNPAVGKKKIGFATFATGIVHGL-QPDAL---MMVLPALAL--PSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQAL  347 (384)
Q Consensus       274 h~~~~~~~k~~~~~s~f~iGilhGL-~P~gl---LaLL~Alal--~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l  347 (384)
                        +   ..++......|.-|++-.+ -|-++   +.+.+....  .+......+...+.++++..+..++.......++.
T Consensus        90 --~---~~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  164 (191)
T PF01810_consen   90 --S---EAKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKF  164 (191)
T ss_pred             --h---hhccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0   0012233466777776666 47663   344444433  12233444445555555555555555555444333


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          348 KDRIPRITEKLTWASSLVAIALGFAILIS  376 (384)
Q Consensus       348 ~~r~~~l~~~L~~~s~~vsI~lGll~Ilr  376 (384)
                      ++  ++. ++++++++++.+++|+.++++
T Consensus       165 ~~--~~~-~~i~~~~g~~li~~av~l~~~  190 (191)
T PF01810_consen  165 SS--RRI-RWINRISGLLLIGFAVYLLYS  190 (191)
T ss_pred             hh--hHH-HHHHHHHHHHHHHHHHHHHHc
Confidence            21  123 399999999999999999875

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.36  E-value=0.003  Score=67.56  Aligned_cols=197  Identities=15%  Similarity=0.129  Sum_probs=111.4

Q ss_pred             HHHHHHHhhhhcCCCCCc-----hhhhhhhcc--CCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 016720          162 AWTGFFAGCLHTLSGPDH-----LAALAPLSI--GRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGT  234 (384)
Q Consensus       162 ~~~gflLG~lHaL~gPDH-----LAAi~~Ls~--~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~e  234 (384)
                      +..+|+.|..=.+ ||.=     +....-+..  +++..|+..+...|+.|=.++|.++|+++...|..+...-=+.|.-
T Consensus       170 ll~afl~GLlL~f-tPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~vl  248 (569)
T COG4232         170 LLLAFLGGLLLNF-TPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWVL  248 (569)
T ss_pred             HHHHHHHHHHHhh-ccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccHHH
Confidence            4445566666666 3652     222222222  2345788999999999999999999999999886665222234555


Q ss_pred             HHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc--chH--HH--HHHHH
Q 016720          235 RVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL--QPD--AL--MMVLP  308 (384)
Q Consensus       235 ivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~--gl--LaLL~  308 (384)
                      ....++++++++.++-- .+..-+.-.-    ...+     ..+...+.......|..|++-||  .||  +.  -+++.
T Consensus       249 ~~la~lf~llALSMfGl-FelqlP~s~q----~~l~-----~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Y  318 (569)
T COG4232         249 GGLAALFVLLALSMFGL-FELQLPSSLQ----TRLT-----QQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLY  318 (569)
T ss_pred             HHHHHHHHHHHHHhhhh-eeecCcHHHh----hHHh-----hhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHH
Confidence            55566666666655521 1222111000    0000     00012233335789999999999  588  22  36677


Q ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016720          309 ALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAI  373 (384)
Q Consensus       309 Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~  373 (384)
                      .++.+|.+.+..-+...++|+-.-.++++++.+..   +. |-..+-..++.+.+.+.+++-+++
T Consensus       319 iaqsg~~~~g~~~l~al~LGMg~Plllv~~f~~~~---LP-k~G~WM~~vK~~fGFvlLa~aiwL  379 (569)
T COG4232         319 IAQSGNALLGGLALYALGLGMGLPLLLIGVFGNRL---LP-KPGPWMNTVKQAFGFVLLATAIWL  379 (569)
T ss_pred             HHhcchHHHHHHHHHHHHHhcccchhhheeccccc---CC-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence            78888887777777777777656666666655321   11 111233444445555555544443

>PRK09304 arginine exporter protein; Provisional

Probab=97.36  E-value=0.049  Score=50.79  Aligned_cols=190  Identities=14%  Similarity=0.011  Sum_probs=102.6

Q ss_pred             HHHHHHHHhhhhcCCCCCchhhhhh-hccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHH-Hhhhh-cHHHHHHHHHHHH
Q 016720          161 SAWTGFFAGCLHTLSGPDHLAALAP-LSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLL-LKDRL-HIEVIRTWGTRVV  237 (384)
Q Consensus       161 ~~~~gflLG~lHaL~gPDHLAAi~~-Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~l-lg~~l-~ie~lq~w~eivv  237 (384)
                      .++.|+++|..=.+. ||+-.+..- -+.++      ..++..++|..++..+...+..+ ++.-+ ..+.+.+...++-
T Consensus         4 ~~~~g~~~g~~~~~t-PGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~G   76 (207)
T PRK09304          4 YYFQGFALGAAMILP-LGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGG   76 (207)
T ss_pred             HHHHHHHHHHHHHhc-cChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888877786 888554443 12221      22667777777777766554321 12111 1246677777888


Q ss_pred             HHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc-chHHHH---HHHHHh---
Q 016720          238 GMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPAL---  310 (384)
Q Consensus       238 GvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Al---  310 (384)
                      +.-|+.+|.-.+|++...+  .   +. +      +  +   ..+++..++.|.-|++--+ -|=+++   .+.++.   
T Consensus        77 a~YLlyLg~~~~rs~~~~~--~---~~-~------~--~---~~~~~~~~~~f~~G~~~~l~NPKa~lf~~~~~~~~~~~  139 (207)
T PRK09304         77 VAFLLWYGFGAFKTAMSSN--I---EL-A------S--A---EVMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQ  139 (207)
T ss_pred             HHHHHHHHHHHHHHhcccc--c---cc-c------c--c---cccCccHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence            8888999988776532100  0   00 0      0  0   0001111346777776655 486643   333333   


Q ss_pred             hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016720          311 ALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQF  378 (384)
Q Consensus       311 al~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~~  378 (384)
                      ..++.. ....+..+ +.+......++.+.....+.+  +.++..++++++++.+.+++|+.++++.+
T Consensus       140 ~~~~~~-~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~in~~~g~~l~~~~~~l~~~~~  203 (207)
T PRK09304        140 LDVEPK-RWFALGTI-SASFLWFFGLALLAAWLAPRL--RTAKAQRIINLFVGCVMWFIALQLARQGI  203 (207)
T ss_pred             cCcchh-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            112111 11222222 223444444444444432222  23577889999999999999999987754

>PRK11469 hypothetical protein; Provisional

Probab=97.34  E-value=0.042  Score=51.22  Aligned_cols=156  Identities=18%  Similarity=0.223  Sum_probs=79.6

Q ss_pred             chhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccc
Q 016720          191 TRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVS  270 (384)
Q Consensus       191 ~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h  270 (384)
                      ++++.....+.++.-|.....    +-.++|+.+. +.+.+|.+++.+.+|+.+|+|++++..+.++      + +++  
T Consensus        32 ~~~~~~~~~l~~g~~q~~m~~----~g~~~G~~l~-~~i~~~~~~i~~~lL~~lG~~mi~e~~~~~~------~-~~~--   97 (188)
T PRK11469         32 KFSEALRTGLIFGAVETLTPL----IGWGMGMLAS-RFVLEWNHWIAFVLLIFLGGRMIIEGFRGAD------D-EDE--   97 (188)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-ccc--
Confidence            456777788888877754433    2233344443 3456677788899999999999998654211      0 000  


Q ss_pred             cccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 016720          271 VYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALP-SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKD  349 (384)
Q Consensus       271 ~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~-s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~  349 (384)
                              +..++...+..+.+|+.--+.  +..+=+.+.-.+ ++..   ..+..++-| ..|...+...+.   +.. 
T Consensus        98 --------~~~~~~~~~~~l~LaiAtSiD--AlavGi~~~~~g~~~~~---~~~~ig~~s-~~~~~~G~~lG~---~~g-  159 (188)
T PRK11469         98 --------EPRRRHGFWLLVTTAIATSLD--AMAVGVGLAFLQVNIIA---TALAIGCAT-LIMSTLGMMVGR---FIG-  159 (188)
T ss_pred             --------ccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHH---HHHHHHHHH-HHHHHHHHHHHH---HHH-
Confidence                    001111223445555444331  211101111111 1111   111111111 123333333332   122 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720          350 RIPRITEKLTWASSLVAIALGFAILISQFFG  380 (384)
Q Consensus       350 r~~~l~~~L~~~s~~vsI~lGll~Ilr~~~g  380 (384)
                        .+..+|...+.+++.+++|+.++++...|
T Consensus       160 --~~~g~~a~~lgG~iLI~iGi~il~~h~~~  188 (188)
T PRK11469        160 --SIIGKKAEILGGLVLIGIGVQILWTHFHG  188 (188)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence              24678889999999999999999886543

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=96.86  E-value=0.4  Score=45.04  Aligned_cols=161  Identities=20%  Similarity=0.264  Sum_probs=90.4

Q ss_pred             HHhHHhhhhHHHHHHHHHHHHHHH-hhhh-cHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccc
Q 016720          197 AVGALWGCGHDAGQVIFGLLFLLL-KDRL-HIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEA  274 (384)
Q Consensus       197 ~lGl~wglGHs~tvvlLGll~~ll-g~~l-~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h  274 (384)
                      +.|....+||.++..+.-++..+- ..-+ ....+.+...++-+.-|+.+|...++......+.        .       
T Consensus        37 ~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~~~~~~~--------~-------  101 (208)
T COG1280          37 RAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAGGAALAE--------E-------  101 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--------c-------
Confidence            457777888887776655444321 1111 1245666677778888888999888754221100        0       


Q ss_pred             cCCcccccccccchhHHHHHhhcc-chHH---HHHHHHHhhcCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 016720          275 LDNPAVGKKKIGFATFATGIVHGL-QPDA---LMMVLPALALPSR----LAGAAFLIMFLLGTVVAMGSYTVFIGSCSQA  346 (384)
Q Consensus       275 ~~~~~~~k~~~~~s~f~iGilhGL-~P~g---lLaLL~Alal~s~----~~g~~yml~FglGTilaM~~vt~l~g~~~~~  346 (384)
                       +  ...++...++.|.-|++-.+ -|=.   ++.++|....++.    ...+.....|.+-....+..+........ +
T Consensus       102 -~--~~~~~~~~~~~f~~G~~~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~  177 (208)
T COG1280         102 -A--AGAPSSSRRKAFRRGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILVGFVVLALYALLAARLR-R  177 (208)
T ss_pred             -c--cccccchhHHHHHHHHHHHhhCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence             0  00000001367888887777 4865   3455555543332    22233333444443444444444433222 2


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          347 LKDRIPRITEKLTWASSLVAIALGFAILISQ  377 (384)
Q Consensus       347 l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~  377 (384)
                      ..++ ++..+++++..+.+.+..|+..++++
T Consensus       178 ~l~~-~~~~~~~~~~~G~~li~~g~~l~~~~  207 (208)
T COG1280         178 LLRR-PRASRIINRLFGVLLIGFGVKLALSR  207 (208)
T ss_pred             HHhC-hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3334 67899999999999999999987764

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=96.82  E-value=0.17  Score=45.82  Aligned_cols=159  Identities=16%  Similarity=0.192  Sum_probs=84.7

Q ss_pred             HHHhHHhhhhHHHHHHHHHHHHHH-Hhhhhc-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCcccccccc
Q 016720          196 AAVGALWGCGHDAGQVIFGLLFLL-LKDRLH-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYE  273 (384)
Q Consensus       196 ~~lGl~wglGHs~tvvlLGll~~l-lg~~l~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~  273 (384)
                      .+.++...+|+.++..+..++..+ ++.-+. .+.+..+..++-+..|+.+|...++...+..+   ..    .+     
T Consensus        18 ~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~~~~~~---~~----~~-----   85 (185)
T TIGR00949        18 RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKKSKKQS---PA----AQ-----   85 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cc----cc-----
Confidence            456778888998888887665543 332222 24567778888888899999877653211000   00    00     


Q ss_pred             ccCCcccccccccchhHHHHHhhcc-chHHH---HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh-
Q 016720          274 ALDNPAVGKKKIGFATFATGIVHGL-QPDAL---MMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALK-  348 (384)
Q Consensus       274 h~~~~~~~k~~~~~s~f~iGilhGL-~P~gl---LaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~-  348 (384)
                        +  +..+++.....|.-|++-.+ -|-++   +.+++....++..  ..-..+|.++.+......-..+.....+.+ 
T Consensus        86 --~--~~~~~~~~~~~f~~g~~~~~~NPk~ilf~~~i~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (185)
T TIGR00949        86 --V--ELAEQTTWKKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTP--TWQLIVLGLTIIVETILWFYVLSLIFSRPAV  159 (185)
T ss_pred             --c--ccccCccHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence              0  00011111346777777766 48663   3445554322211  111233444433333333333333332222 


Q ss_pred             -hhhhHHHHHHHHHHHHHHHHHHHH
Q 016720          349 -DRIPRITEKLTWASSLVAIALGFA  372 (384)
Q Consensus       349 -~r~~~l~~~L~~~s~~vsI~lGll  372 (384)
                       .+.++..++++++++++.+++|+.
T Consensus       160 ~~~~~~~~~~in~~~g~~l~~~~v~  184 (185)
T TIGR00949       160 RRKYSKQQKWIDGITGALFVGFGIR  184 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             134567889999999988888864

>PRK10958 leucine export protein LeuE; Provisional

Probab=96.75  E-value=0.5  Score=44.31  Aligned_cols=178  Identities=13%  Similarity=0.100  Sum_probs=89.0

Q ss_pred             cCCCCCchhhhhh-hccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHH-Hhhhhc-HHHHHHHHHHHHHHHHHHHHHHHh
Q 016720          173 TLSGPDHLAALAP-LSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLL-LKDRLH-IEVIRTWGTRVVGMTLLVIGAMGI  249 (384)
Q Consensus       173 aL~gPDHLAAi~~-Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~l-lg~~l~-ie~lq~w~eivvGvlLIvLGl~~L  249 (384)
                      ++. |||--++.- .+.++.++    .++...+|+.++..+...+..+ ++.-+. .+.+.+...++-+..|+.+|...+
T Consensus        21 ~~s-PGP~~~~v~~~~~~~G~r----~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~   95 (212)
T PRK10958         21 VLL-PGPNSLYVLSTAARRGVK----AGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML   95 (212)
T ss_pred             hcC-CchHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            353 787555443 22222233    4566677887777776554432 222221 356777788888899999998887


Q ss_pred             HhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc-chHHHH---HHHHHhhcCC---hHHH-HHH
Q 016720          250 KEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPALALPS---RLAG-AAF  321 (384)
Q Consensus       250 ~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Alal~s---~~~g-~~y  321 (384)
                      |...+....    .  ..        +  + .+  .....|.-|++-.+ -|-+++   .+.+....++   .... ..+
T Consensus        96 ~~~~~~~~~----~--~~--------~--~-~~--~~~~~f~~g~~~~l~NPKa~lf~~a~~~~fi~~~~~~~~~~~~~l  156 (212)
T PRK10958         96 RAALRRWRR----R--AA--------S--A-AP--PYGAPFRRALILSLTNPKAILFFVSFFVQFVDPNYAHPALSFLIL  156 (212)
T ss_pred             Hhhcccccc----c--cc--------c--c-Cc--chhHHHHHHHHHHhhChHHHHHHHHHHhcccCCCCcchHHHHHHH
Confidence            653211000    0  00        0  0 00  01235666766655 487644   3334332221   1111 222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          322 LIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI  375 (384)
Q Consensus       322 ml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il  375 (384)
                      ...+.+........++....... +..++.++..++++++++.+.+.+|+.++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~g~~l~~~~i~l~~  209 (212)
T PRK10958        157 ATILQLVSFCYLSFLIFSGARLA-AYFRRRKKLAAGGNSLVGLLFVGFAAKLAT  209 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22222222222223333333222 222233456788999999999999987654

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=96.36  E-value=0.84  Score=42.23  Aligned_cols=159  Identities=11%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             HHhHHhhhhHHHHHHHHHHHHHHH-hhhhc-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccc
Q 016720          197 AVGALWGCGHDAGQVIFGLLFLLL-KDRLH-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEA  274 (384)
Q Consensus       197 ~lGl~wglGHs~tvvlLGll~~ll-g~~l~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h  274 (384)
                      +.++...+|..++..+...+..+- +.-+. .+.+..+..++-+.-|+.+|...++...+   .   .++  .       
T Consensus        37 r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~~~---~---~~~--~-------  101 (205)
T PRK10520         37 RGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAAGA---I---DLH--T-------  101 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc---c---ccc--c-------
Confidence            456677778888777765544222 21111 24566777778888888899888764210   0   000  0       


Q ss_pred             cCCcccccccccchhHHHHHhhcc-chHHHH---HHHHHhhcC-Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 016720          275 LDNPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPALALP-SR--LAGAAFLIMFLLGTVVAMGSYTVFIGSCSQAL  347 (384)
Q Consensus       275 ~~~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Alal~-s~--~~g~~yml~FglGTilaM~~vt~l~g~~~~~l  347 (384)
                       +   ..+ +..+..|.-|++--+ -|=+++   ++++....+ ..  ...+.+...+.+-.......++.+.....+..
T Consensus       102 -~---~~~-~~~~~~f~~g~~~~l~NPKailf~~a~~p~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~  176 (205)
T PRK10520        102 -L---AST-QSRRRLFKRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYLVLGVTTVVVDIIVMIGYATLAQRIARWI  176 (205)
T ss_pred             -c---cCC-ccHHHHHHHHHHHHhhCcHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0   000 111245666776666 386643   444444222 11  11122223233222233333333333322111


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          348 KDRIPRITEKLTWASSLVAIALGFAILISQ  377 (384)
Q Consensus       348 ~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~  377 (384)
                        +.++..++++++++.+.+++|+.+++++
T Consensus       177 --~~~~~~~~i~~~~g~~li~~~~~l~~~~  204 (205)
T PRK10520        177 --KGPKQMKALNKIFGSLFMLVGALLASAR  204 (205)
T ss_pred             --cCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              2346678899999999999998887653

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=96.18  E-value=0.029  Score=52.32  Aligned_cols=90  Identities=22%  Similarity=0.333  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhh--hhcCCCCCchhhhhhhc-cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc-HHHHHHHH
Q 016720          158 LLSSAWTGFFAGC--LHTLSGPDHLAALAPLS-IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH-IEVIRTWG  233 (384)
Q Consensus       158 lls~~~~gflLG~--lHaL~gPDHLAAi~~Ls-~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~-ie~lq~w~  233 (384)
                      .++.+..|+..|.  .-|..  .-+.++.... ...+..+....-+.|++|+.+-++++++....+++..+ .....+|.
T Consensus       117 ~~gaf~lG~~~~l~~~PC~~--p~l~~il~~a~~~~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i  194 (211)
T PF02683_consen  117 LLGAFLLGLLFGLVWSPCTG--PILAAILALAASSGSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI  194 (211)
T ss_pred             cccHHHHHHHHHHHhhhcch--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666766663  35542  2344554443 33345788888899999999999999988877653332 45777888


Q ss_pred             HHHHHHHHHHHHHHHh
Q 016720          234 TRVVGMTLLVIGAMGI  249 (384)
Q Consensus       234 eivvGvlLIvLGl~~L  249 (384)
                      +.+.|++++++|+|.+
T Consensus       195 ~~~~G~lli~~g~~~l  210 (211)
T PF02683_consen  195 KRISGILLIALGLYLL  210 (211)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999875

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>PRK10229 threonine efflux system; Provisional

Probab=96.11  E-value=1.1  Score=41.30  Aligned_cols=163  Identities=17%  Similarity=0.139  Sum_probs=80.4

Q ss_pred             HHhHHhhhhHHHHHHHHHHHHHHH-hhhh-cHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccc
Q 016720          197 AVGALWGCGHDAGQVIFGLLFLLL-KDRL-HIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEA  274 (384)
Q Consensus       197 ~lGl~wglGHs~tvvlLGll~~ll-g~~l-~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h  274 (384)
                      +.+....+|...+..+...+..+- +.-+ ..+.+..+..++-++.|+.+|...++...+.   .  ..+        + 
T Consensus        36 ~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~~~~---~--~~~--------~-  101 (206)
T PRK10229         36 KEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGALKK---E--DVA--------A-  101 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c--ccc--------c-
Confidence            456667777777777754443221 1111 1245667777788888888998887643110   0  000        0 


Q ss_pred             cCCcccccccccchhHHHHHhhcc-chHHH---HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-Hhhh
Q 016720          275 LDNPAVGKKKIGFATFATGIVHGL-QPDAL---MMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQ-ALKD  349 (384)
Q Consensus       275 ~~~~~~~k~~~~~s~f~iGilhGL-~P~gl---LaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~-~l~~  349 (384)
                       .+ ...+.+..+..|.-|++--+ -|-++   ..+++....++..... ....+....+..+..+..+...... ..++
T Consensus       102 -~~-~~~~~~~~~~~f~~G~l~~l~NPka~lf~~ai~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (206)
T PRK10229        102 -EE-PQVELAKSGRSFLKGLLTNLSNPKAIIYFGSVFSLFVGDNVGAGA-RWGLFALIIVETLAWFTVVASLFALPQMRR  178 (206)
T ss_pred             -cc-ccccCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence             00 00011112345777777766 48763   3445544322211111 1122222222222222222211111 1222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          350 RIPRITEKLTWASSLVAIALGFAILIS  376 (384)
Q Consensus       350 r~~~l~~~L~~~s~~vsI~lGll~Ilr  376 (384)
                      ..++..++++++++++.+.+|+.++++
T Consensus       179 ~~~~~~~~in~~~g~~li~~~i~l~~~  205 (206)
T PRK10229        179 GYQRLAKWIDGFAGALFAGFGIHLIIS  205 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334677889999999999999877653

>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins

Probab=95.93  E-value=0.24  Score=45.96  Aligned_cols=156  Identities=21%  Similarity=0.232  Sum_probs=82.6

Q ss_pred             HHHHhhhhcCCCCCchhhhhhhc---cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHH
Q 016720          165 GFFAGCLHTLSGPDHLAALAPLS---IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTL  241 (384)
Q Consensus       165 gflLG~lHaL~gPDHLAAi~~Ls---~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlL  241 (384)
                      +|.-|..|=+.++||+.++..+.   .+..+++ .+.....    -....++|.++...+-.      -++.|..+...+
T Consensus        21 gf~sGl~HPl~GlDHLl~mlavGl~aa~~~~~~-~~~~p~~----f~~~m~~G~~lg~~g~~------~p~~E~~Ia~Sv   89 (180)
T PF04955_consen   21 GFLSGLLHPLTGLDHLLAMLAVGLWAAQQGGRA-RWALPLA----FVAAMLVGAALGLAGVP------LPGVETGIAASV   89 (180)
T ss_pred             hHHHHhhcccccHHHHHHHHHHHHHHHHhccch-HHHHHHH----HHHHHHHHHHHHhccCC------chHHHHHHHHHH
Confidence            88889999999999999998863   1111111 1111111    11222334444433322      256777777778


Q ss_pred             HHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHHHHH
Q 016720          242 LVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAF  321 (384)
Q Consensus       242 IvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~y  321 (384)
                      +++|+...... +.+                      ..   -........|+.||..-...+        +.......|
T Consensus        90 ~~~G~ll~~~~-r~~----------------------~~---~~~~l~a~falfHG~ahG~e~--------~~~~~~~~y  135 (180)
T PF04955_consen   90 LVLGLLLAFGR-RLP----------------------LW---LALLLVALFALFHGYAHGAEM--------PGAASGLLY  135 (180)
T ss_pred             HHHHHHHHhhh-ccc----------------------hh---HHHHHHHHHHHHHhhhhHhhh--------ccccchHHH
Confidence            88887666432 100                      00   001134566778888643322        111234457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016720          322 LIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFA  372 (384)
Q Consensus       322 ml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll  372 (384)
                      ..-|.++|..-+.. +...+...+   ++   ..++..+..+.....+|+.
T Consensus       136 ~~G~~~at~~l~~~-g~~~~~~~~---~~---~~~~~~r~~G~~ia~~G~~  179 (180)
T PF04955_consen  136 AAGFVLATALLHAA-GLALGRLLR---RR---WAARAVRAAGGAIAAAGLM  179 (180)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHH---hh---hhHHHHHHHHHHHHHHHHh
Confidence            78888777654443 333332222   11   1222778888888888875

They contain many conserved histidines that are likely to be involved in nickel binding.

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=95.34  E-value=2.3  Score=39.26  Aligned_cols=118  Identities=7%  Similarity=0.021  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc-chHHH---
Q 016720          228 VIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL-QPDAL---  303 (384)
Q Consensus       228 ~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL-~P~gl---  303 (384)
                      .+.+...++-+.-|+.+|.-.+|..   +  .    +++         .  +. ++    ..|.-|++--+ -|=++   
T Consensus        70 ~~~~vlk~~Ga~YLlyLg~~~~~s~---~--~----~~~---------~--~~-~~----~~f~~G~~~~l~NPKa~lf~  124 (195)
T PRK10323         70 AAVHLLSWAGAAYIVWLAWKIATSP---T--K----EDG---------L--QA-KP----ISFWASFALQFVNVKIILYG  124 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc---C--c----ccc---------C--CC-CC----hhHHHHHHHHhHCHHHHHHH
Confidence            5556666777777888988776531   0  0    000         0  00 11    23555666555 48663   


Q ss_pred             HHHHHHhhcCC-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016720          304 MMVLPALALPS-R--LAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAIL  374 (384)
Q Consensus       304 LaLL~Alal~s-~--~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~I  374 (384)
                      +.+++....++ .  ...+.+...|.+........++.....    +++...+.+++++++++.+.+++|+.+.
T Consensus       125 ~a~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~g~~l~~~a~~l~  194 (195)
T PRK10323        125 ITALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCWALAGHL----FQRLFRQYGRQLNIVLALLLVYCAVRIF  194 (195)
T ss_pred             HHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455543321 1  112222223333333333344433333    3333335667899999999999998764

>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function

Probab=95.10  E-value=0.37  Score=45.30  Aligned_cols=148  Identities=20%  Similarity=0.235  Sum_probs=91.0

Q ss_pred             HHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcH-H----HHHHHHHHHHHHHHHHHHHHHhHhhhcCC-CCcccccCCcc
Q 016720          194 ESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHI-E----VIRTWGTRVVGMTLLVIGAMGIKEASEVP-TPCVALENGEC  267 (384)
Q Consensus       194 ~a~~lGl~wglGHs~tvvlLGll~~llg~~l~i-e----~lq~w~eivvGvlLIvLGl~~L~~~~~~~-~~~~~~~~g~~  267 (384)
                      +.......+..|-.+.-...|++...+...++. +    .......++.|.++++.|+|.+-..++.- +++      +.
T Consensus        34 ~~~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~C------r~  107 (191)
T PF09948_consen   34 RRARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHC------RS  107 (191)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHC------CC
Confidence            345566788899999999999999888665541 1    12222347889999999999885433311 111      10


Q ss_pred             ccccccccCCcccccccccchhHHHHHhhcc--chH-HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016720          268 DVSVYEALDNPAVGKKKIGFATFATGIVHGL--QPD-ALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCS  344 (384)
Q Consensus       268 ~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~-glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~  344 (384)
                      ...    ..  ..+.+......+-.|+-||+  .+| -.++              +.+++.|+.-+..|.+++.+...  
T Consensus       108 p~~----f~--~~~wr~g~~~alr~Gl~hG~~CvGCCWaLM--------------llmfv~G~mnl~wMa~lt~~~~~--  165 (191)
T PF09948_consen  108 PLS----FL--AFHWRAGARGALRMGLRHGLYCVGCCWALM--------------LLMFVVGVMNLAWMAALTALMFA--  165 (191)
T ss_pred             cch----Hh--hcCCCcccchHHHHHHHHccHHHHHHHHHH--------------HHHHHhccccHHHHHHHHHHHHH--
Confidence            000    00  01112223578999999999  354 3322              22333455556678777776542  


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016720          345 QALKDRIPRITEKLTWASSLVAIALGFAI  373 (384)
Q Consensus       345 ~~l~~r~~~l~~~L~~~s~~vsI~lGll~  373 (384)
                          ||.....+++.+..+.+.++.|+++
T Consensus       166 ----EK~~p~g~~l~r~~G~~l~~~g~~l  190 (191)
T PF09948_consen  166 ----EKLLPWGRRLSRAVGVALIVWGVLL  190 (191)
T ss_pred             ----HHhCCcchHHHHHHHHHHHHHHHHH
Confidence                3444557888999999999998875

>COG1971 Predicted membrane protein [Function unknown]

Probab=94.32  E-value=4.8  Score=37.99  Aligned_cols=180  Identities=18%  Similarity=0.223  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCchhhhhh--hccCCc-hhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 016720          158 LLSSAWTGFFAGCLHTLSGPDHLAALAP--LSIGRT-RMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGT  234 (384)
Q Consensus       158 lls~~~~gflLG~lHaL~gPDHLAAi~~--Ls~~r~-~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~e  234 (384)
                      +++.+..|+.++    +   |-.+.-..  +...+. .++.+..+..+|..|.++-++ |   .+.|+.++ .-+..|..
T Consensus         3 ~~sllllA~als----m---DAFav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pli-G---~~~g~~~s-~~i~~~~~   70 (190)
T COG1971           3 IISLLLLAIALS----M---DAFAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLI-G---WFIGKFLS-TFIAEWAH   70 (190)
T ss_pred             HHHHHHHHHHHh----h---HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHH-HHHHHHHH
Confidence            456666676655    2   33222222  222222 267888899999888766543 2   22233332 44677888


Q ss_pred             HHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccch-hHHHHHhhccchHHHHHHHHHhhcC
Q 016720          235 RVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFA-TFATGIVHGLQPDALMMVLPALALP  313 (384)
Q Consensus       235 ivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s-~f~iGilhGL~P~glLaLL~Alal~  313 (384)
                      ++.+++|+.+|++++++..+..+..        +.      .++  .+....|. ...+|+.--+  ++..+-+...-++
T Consensus        71 wigf~lL~~lG~~mI~e~f~~~~~~--------~~------~~~--~~~~~~~~~~~~laiatSi--dal~vG~~~a~lg  132 (190)
T COG1971          71 WIGFVLLIILGLKMIIEGFKNEEDE--------FV------DPA--EKHDLNFKELILLAIATSI--DALAVGVGLAFLG  132 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhhcc--------hh------ccc--ccchhhHHHHHHHHHHHHH--HHHHHhhhHHHhc
Confidence            8899999999999999865532110        00      000  01111133 4444544333  1211111111111


Q ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          314 -SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQ  377 (384)
Q Consensus       314 -s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~  377 (384)
                       +....+..+.+++    ..|..++..++.-..      ....+|...+.+++.+++|+..++..
T Consensus       133 v~i~~~av~iG~~T----~il~~~G~~IG~~~g------~~~g~~ae~lgGiiLI~~G~~iL~~~  187 (190)
T COG1971         133 VNILLAAVAIGLIT----LILSALGAIIGRKLG------KFLGKYAEILGGIILIGIGVKILLEH  187 (190)
T ss_pred             chHHHHHHHHHHHH----HHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence             1222233333232    235555555553222      34678888999999999999988763

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=93.26  E-value=2.3  Score=40.10  Aligned_cols=36  Identities=22%  Similarity=0.199  Sum_probs=26.5

Q ss_pred             HHHhhhhcHHHHHH-HHHHHHHHHHHHHHHHHhHhhhc
Q 016720          218 LLLKDRLHIEVIRT-WGTRVVGMTLLVIGAMGIKEASE  254 (384)
Q Consensus       218 ~llg~~l~ie~lq~-w~eivvGvlLIvLGl~~L~~~~~  254 (384)
                      .++|+.+. +.+.+ |.+++.+++|+.+|++++++..+
T Consensus        48 ~~~G~~~~-~~i~~~~~~~ig~~iLi~iG~~mi~~~~~   84 (206)
T TIGR02840        48 MLLGKFLA-KFLPPKVTEILGAFILIAIGIWIIYNAFR   84 (206)
T ss_pred             HHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455554 44444 78899999999999999988654

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=93.23  E-value=0.79  Score=49.51  Aligned_cols=88  Identities=14%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHhhh--hcCCCCCchhhhhhh-ccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHH-
Q 016720          157 ELLSSAWTGFFAGCL--HTLSGPDHLAALAPL-SIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTW-  232 (384)
Q Consensus       157 ~lls~~~~gflLG~l--HaL~gPDHLAAi~~L-s~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w-  232 (384)
                      +..+.+++|++.|..  -|.. | .+.++... ....+.+.....-+.|++|+.+-++++|.....+   ++  ....| 
T Consensus       288 ~~~gaf~~G~l~~l~~~PC~~-p-~L~~~L~~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~---lp--k~g~wm  360 (571)
T PRK00293        288 SLGGVFVMGAISGLICSPCTT-A-PLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL---LP--KSGPWM  360 (571)
T ss_pred             chHhHHHHHHHHHHHhCCCch-H-HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc--cCccHH
Confidence            356667777776765  4442 1 34444443 3333456677777899999999999998875332   22  34555 


Q ss_pred             --HHHHHHHHHHHHHHHHhHh
Q 016720          233 --GTRVVGMTLLVIGAMGIKE  251 (384)
Q Consensus       233 --~eivvGvlLIvLGl~~L~~  251 (384)
                        .+.+.|++|+++|+|.+++
T Consensus       361 ~~~k~~~G~~ll~~~~~ll~~  381 (571)
T PRK00293        361 NQVKTAFGFVLLALPVFLLER  381 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence              4568899999999999864

>COG2370 HupE Hydrogenase/urease accessory protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.85  E-value=3.2  Score=39.20  Aligned_cols=159  Identities=25%  Similarity=0.352  Sum_probs=87.2

Q ss_pred             HHHHHHhhhhcCCCCCchhhhhhhcc----CCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHH
Q 016720          163 WTGFFAGCLHTLSGPDHLAALAPLSI----GRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVG  238 (384)
Q Consensus       163 ~~gflLG~lHaL~gPDHLAAi~~Ls~----~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvG  238 (384)
                      +.+|..|..|=+.+.||+.++.++.-    .+..++.++.-+.|     +...++|.++.+.+-.++      ..|..+.
T Consensus        35 ~~gF~aG~~HPl~GlDHL~~mvAVGlw~a~aag~~~~~~~p~aF-----V~~mi~G~llgl~gv~LP------fvE~~Ia  103 (201)
T COG2370          35 THGFLAGVAHPLTGLDHLLAMVAVGLWAALAAGIRAGWLVPLAF-----VATMILGALLGLSGVHLP------FVEPGIA  103 (201)
T ss_pred             cchhhhhccCccccHHHHHHHHHHHHHHHHhcchhhhHHhHHHH-----HHHHHHHHHHhhccCCCC------cchHHHH
Confidence            34588899999999999999998642    11122333333322     334566777777776665      3345555


Q ss_pred             HHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHH
Q 016720          239 MTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAG  318 (384)
Q Consensus       239 vlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g  318 (384)
                      ...+++|+..-..+ +.+.+                    ...     .-.=..|+.||-+=.        ...++....
T Consensus       104 ~Sv~~~Gllla~~~-rlp~~--------------------~~~-----~l~gifgLfHG~AhG--------~e~p~~~~~  149 (201)
T COG2370         104 ASVLGLGLLLALAA-RLPLP--------------------AVA-----ALIGIFGLFHGYAHG--------TELPGGAGA  149 (201)
T ss_pred             HHHHHHHHHHHhcc-CCCcH--------------------HHH-----HHHHHHHHHhhhhhh--------ccCCcccch
Confidence            66666676553211 11000                    000     011234455554311        111222234


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          319 AAFLIMFLLGTVV-AMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI  375 (384)
Q Consensus       319 ~~yml~FglGTil-aM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il  375 (384)
                      ..|++-|.+.|.. .+..+.+..     .+    ++...++.+.++.....+|+.+..
T Consensus       150 ~~y~lGF~~at~aLh~~g~~lg~-----~l----~~~~~~l~R~vG~~~a~~G~~l~~  198 (201)
T COG2370         150 LEYVLGFVLATAALHAAGYALGL-----GL----KARLSWLVRLVGFALAAAGFGLLF  198 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hh----hHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4888888887754 222222221     12    245678888899999999988754

>COG2119 Predicted membrane protein [Function unknown]

Probab=92.79  E-value=3.6  Score=38.77  Aligned_cols=125  Identities=17%  Similarity=0.170  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCccccccc-ccchhHHHHHhhccch-HHHHHH
Q 016720          229 IRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKK-IGFATFATGIVHGLQP-DALMMV  306 (384)
Q Consensus       229 lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~-~~~s~f~iGilhGL~P-~glLaL  306 (384)
                      ..+|..++.|..-++.|+|.+++.++.+.        +.           +..+++ ...++|..=++--++= +++..+
T Consensus        63 ~~~~~~~~~~~~Flafav~~l~edk~~~~--------e~-----------~~~~~~~~f~~tfi~~FlaE~GDKTQiATI  123 (190)
T COG2119          63 PERPLAWASGVLFLAFAVWMLIEDKEDDE--------EA-----------QAASPRGVFVTTFITFFLAELGDKTQIATI  123 (190)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccccccc--------cc-----------cccccccHHHHHHHHHHHHHhccHHHHHHH
Confidence            35677778899999999999986433211        00           011111 1123444444444432 456555


Q ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016720          307 LPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGY  381 (384)
Q Consensus       307 L~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~~~g~  381 (384)
                      ..+...+.++..       -+|++++|...+.+.-..-..+.+|.|  .+++..+++++..++|+..+++...+.
T Consensus       124 aLaA~~~~~~~V-------~~Gt~lg~~l~s~laVl~G~~ia~ki~--~r~l~~~aallFl~fal~~~~~~~~~~  189 (190)
T COG2119         124 ALAADYHSPWAV-------FAGTTLGMILASVLAVLLGKLIAGKLP--ERLLRFIAALLFLIFALVLLWQVFEAL  189 (190)
T ss_pred             HHhhcCCCceee-------ehhhHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            556665553221       468888888887776666666666765  678899999999999988887766543

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=92.66  E-value=1.2  Score=43.55  Aligned_cols=91  Identities=21%  Similarity=0.297  Sum_probs=49.7

Q ss_pred             hhHHHHHhhccchHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh-----hhhHHHHHHHHHH
Q 016720          288 ATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKD-----RIPRITEKLTWAS  362 (384)
Q Consensus       288 s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~-----r~~~l~~~L~~~s  362 (384)
                      ..|..|+.|++.|+..-++..+....++ ....--+.|++|...+-.+.+.+.......+.+     +..........++
T Consensus         7 laf~~G~~HAl~PgH~kai~~~~~~~~~-~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (282)
T PF03824_consen    7 LAFLYGLLHALGPGHGKAIIASYLLSSR-RALRVGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSAVGLLVSGS   85 (282)
T ss_pred             HHHHHHHHHccCCChHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhHHHHHHHHH
Confidence            4789999999999865555444443332 233344444555444444444444333333333     1112222222266


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 016720          363 SLVAIALGFAILISQFF  379 (384)
Q Consensus       363 ~~vsI~lGll~Ilr~~~  379 (384)
                      .++.+++|.++++++.-
T Consensus        86 ~llv~~~~~~~~~~~~~  102 (282)
T PF03824_consen   86 FLLVIGIGNWLLLRRLR  102 (282)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67777788888888754

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=92.62  E-value=0.65  Score=43.70  Aligned_cols=158  Identities=17%  Similarity=0.165  Sum_probs=85.8

Q ss_pred             hHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccc
Q 016720          193 MESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVY  272 (384)
Q Consensus       193 ~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h  272 (384)
                      .+.+..|=.-|.+=.+...+   +......-+    .++|.--..|++=|.+|++.+.+..+         +++++..  
T Consensus        25 ~~~I~~GqylG~~~Lv~~Sl---~~~~~l~~i----p~~wiLGlLGliPI~lGi~~l~~~~~---------~~e~~~~--   86 (191)
T PF03596_consen   25 RRQIVIGQYLGFTILVLASL---LGAFGLLFI----PPEWILGLLGLIPIYLGIKALFSGED---------DDEEEAE--   86 (191)
T ss_pred             hhhhhhhHHHHHHHHHHHHH---HHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHcCCC---------ccccccc--
Confidence            44566665555533322222   222222233    35666666799999999987753210         1011100  


Q ss_pred             cccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 016720          273 EALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIP  352 (384)
Q Consensus       273 ~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~  352 (384)
                      +. . .+...+..-++...+-+.+  ++|=.-...|-.+.-++..-..++++|.+.     .++-+..++-..+...-.+
T Consensus        87 ~~-~-~~~~~~~~i~~Va~iTiAn--GgDNigIYiP~Fa~~s~~~l~v~l~vF~il-----v~v~c~la~~l~~~p~i~~  157 (191)
T PF03596_consen   87 EK-L-NSPKSNSLILTVAAITIAN--GGDNIGIYIPLFASLSLAELIVILIVFLIL-----VGVWCFLAYKLARIPIIAE  157 (191)
T ss_pred             cc-c-ccccccchhHHhhhhhhhc--CCCeEEEeehhhhcCCHHHHHHHHHHHHHH-----HHHHHHHHHHHhCChHHHH
Confidence            00 0 0001111223444555555  556444556777777788888888888864     3333333332222222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          353 RITEKLTWASSLVAIALGFAILISQ  377 (384)
Q Consensus       353 ~l~~~L~~~s~~vsI~lGll~Ilr~  377 (384)
                      .++|+-.++.+++.+.+|+++++++
T Consensus       158 ~leryg~~l~p~v~I~LGi~Il~es  182 (191)
T PF03596_consen  158 FLERYGRWLVPIVYIGLGIYILIES  182 (191)
T ss_pred             HHHHhcccHHHHHHHHhCceeeEeC
Confidence            5788888999999999999987764

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=92.46  E-value=0.38  Score=44.49  Aligned_cols=81  Identities=25%  Similarity=0.350  Sum_probs=58.2

Q ss_pred             HHHHHHHhhhhcCCCCCchhhhhhhc-cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q 016720          162 AWTGFFAGCLHTLSGPDHLAALAPLS-IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMT  240 (384)
Q Consensus       162 ~~~gflLG~lHaL~gPDHLAAi~~Ls-~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvl  240 (384)
                      .+..|.+|+.+.+-.|+.+-.+.... ...+..+.....+.+++|-....++++.+...++++.     +++...++|++
T Consensus       118 ~~~~~~lG~l~gllPCg~~y~~l~~A~~s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~-----~~~~~r~~g~~  192 (199)
T PF13386_consen  118 PWGAFLLGFLNGLLPCGPVYFALALAAASGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRL-----RRRLLRLAGVL  192 (199)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            35566777777775466543333322 2335788999999999999999999888888776654     45555689999


Q ss_pred             HHHHHHH
Q 016720          241 LLVIGAM  247 (384)
Q Consensus       241 LIvLGl~  247 (384)
                      ++++|+|
T Consensus       193 ~i~~G~~  199 (199)
T PF13386_consen  193 LIILGIY  199 (199)
T ss_pred             HHHHHHC
Confidence            9999986

>TIGR00948 2a75 L-lysine exporter

Probab=91.72  E-value=9.7  Score=34.31  Aligned_cols=147  Identities=18%  Similarity=0.062  Sum_probs=75.2

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHH-hhhhc-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccC
Q 016720          199 GALWGCGHDAGQVIFGLLFLLL-KDRLH-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALD  276 (384)
Q Consensus       199 Gl~wglGHs~tvvlLGll~~ll-g~~l~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~  276 (384)
                      |+...+|+.++..+..++..+- +.-+. .+.+.++..++-+..|+.+|.-.+|...+.+  .   ++ +.+    +   
T Consensus        22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~~~~--~---~~-~~~----~---   88 (177)
T TIGR00948        22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAWRGP--G---AL-VPD----E---   88 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c---cc-ccc----c---
Confidence            8888999999888876655332 22221 2466777778888899999988887532110  0   00 000    0   


Q ss_pred             CcccccccccchhHHHHHhhcc-chHHHH---HHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 016720          277 NPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPALALP-SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRI  351 (384)
Q Consensus       277 ~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Alal~-s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~  351 (384)
                          .++...++.|.-|++-.+ -|=+++   ++.++.... ....-..+...+.+........++.+.....+.+  +.
T Consensus        89 ----~~~~~~~~~f~~G~~~~l~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~  162 (177)
T TIGR00948        89 ----PKKMGLKKVLAMTLAVTLLNPHVYLDTVVLIGALGLQFSDLLRWLFAAGAIAASLVWFASLAFGAARLSPLL--AS  162 (177)
T ss_pred             ----ccccCHHHHHHHHHHHHHhCchHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence                001112346777877766 486644   333443211 1112222333333333444444444443332211  23


Q ss_pred             hHHHHHHHHHHHH
Q 016720          352 PRITEKLTWASSL  364 (384)
Q Consensus       352 ~~l~~~L~~~s~~  364 (384)
                      ++..++++++++.
T Consensus       163 ~~~~~~i~~~~g~  175 (177)
T TIGR00948       163 PKVWRIINLVVAV  175 (177)
T ss_pred             ccHHHHHHHHHhh
Confidence            3566777777665

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.54  E-value=3.2  Score=41.74  Aligned_cols=30  Identities=23%  Similarity=0.158  Sum_probs=25.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720          351 IPRITEKLTWASSLVAIALGFAILISQFFG  380 (384)
Q Consensus       351 ~~~l~~~L~~~s~~vsI~lGll~Ilr~~~g  380 (384)
                      ......++..++..+.+++|+++++|..-+
T Consensus       126 ~~~s~~~lE~~S~~Ll~~~G~w~~~r~lr~  155 (303)
T COG2215         126 FALSEPWLELISFLLLILLGLWLLWRTLRR  155 (303)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999997653

>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type

Probab=89.67  E-value=16  Score=35.36  Aligned_cols=57  Identities=18%  Similarity=0.166  Sum_probs=33.4

Q ss_pred             hhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc--HHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 016720          192 RMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH--IEVIRTWGTRVVGMTLLVIGAMGIKEA  252 (384)
Q Consensus       192 ~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~--ie~lq~w~eivvGvlLIvLGl~~L~~~  252 (384)
                      |++.......|+++=    .+++.++........  +.....|...+.++.|++.|++.+|++
T Consensus        31 ~k~~~~i~~~Y~~l~----~~l~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~W   89 (224)
T PF09930_consen   31 RKEIALIALGYGLLF----LLLGYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKKW   89 (224)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667776666543    333333333321111  223334456789999999999999875

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=88.89  E-value=2.6  Score=41.93  Aligned_cols=85  Identities=12%  Similarity=0.024  Sum_probs=56.6

Q ss_pred             HHhhhhcCCCCCchhhhhh---hccCCchhHHHHHhHHhhhhHHHHHHHHHHHHH-HHhhhhc-HHHHHHHH---HHHHH
Q 016720          167 FAGCLHTLSGPDHLAALAP---LSIGRTRMESAAVGALWGCGHDAGQVIFGLLFL-LLKDRLH-IEVIRTWG---TRVVG  238 (384)
Q Consensus       167 lLG~lHaL~gPDHLAAi~~---Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~-llg~~l~-ie~lq~w~---eivvG  238 (384)
                      .+|+.|.+- |.+-|.++-   ...+ ..+..+..-+.+++|=.+++..+|+++. .+++... ....+.+.   ++++|
T Consensus       182 ~igl~~Gl~-PCpgAl~VLL~a~~lg-~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~  259 (279)
T PRK10019        182 LFGLTGGLI-PCPAAITVLLICIQLK-ALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSS  259 (279)
T ss_pred             HHHHHhccC-CCHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            445666675 555443322   2334 3566788889999999999999999984 3322211 12344444   49999


Q ss_pred             HHHHHHHHHHhHhhh
Q 016720          239 MTLLVIGAMGIKEAS  253 (384)
Q Consensus       239 vlLIvLGl~~L~~~~  253 (384)
                      ++.+++|++..++.+
T Consensus       260 ~l~i~~G~~~~~~~~  274 (279)
T PRK10019        260 LLIGLVGVYMGVHGF  274 (279)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887643

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=86.45  E-value=29  Score=32.65  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720          353 RITEKLTWASSLVAIALGFAILISQFFG  380 (384)
Q Consensus       353 ~l~~~L~~~s~~vsI~lGll~Ilr~~~g  380 (384)
                      .-.+.++++.+++..++|+-+++..+.+
T Consensus       174 ~g~~vi~Ri~Glil~aiavq~i~~Gl~~  201 (203)
T PF01914_consen  174 TGLQVITRIMGLILAAIAVQMILSGLRG  201 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557889999999999999999887654

These proteins may be transporters. ; GO: 0016021 integral to membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.36  E-value=12  Score=35.92  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHh--hhhcCCCCCchhhhhhhccC-CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhh--hhcHHHHHHH
Q 016720          158 LLSSAWTGFFAG--CLHTLSGPDHLAALAPLSIG-RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKD--RLHIEVIRTW  232 (384)
Q Consensus       158 lls~~~~gflLG--~lHaL~gPDHLAAi~~Ls~~-r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~--~l~ie~lq~w  232 (384)
                      .+..+..|+..|  -.=|.+  .-+.++..+... ++..+....-+.|++|=.+-++++++...-+.+  .-.+.+.+.+
T Consensus       126 ~~~~f~lGl~f~~~wtPC~g--Pil~sil~laa~~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~  203 (220)
T COG0785         126 ALGAFLLGLLFALGWTPCIG--PILGSILALAASTGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGA  203 (220)
T ss_pred             chhHHHHHHHHHHHhccchh--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445544444  445663  235555555443 335788999999999999999999999987765  2224577778


Q ss_pred             HHHHHHHHHHHHHHHH
Q 016720          233 GTRVVGMTLLVIGAMG  248 (384)
Q Consensus       233 ~eivvGvlLIvLGl~~  248 (384)
                      .+.+.|+.+|++|++.
T Consensus       204 i~~~~G~lli~~Gv~l  219 (220)
T COG0785         204 IEIVGGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8899999999999975

>COG4280 Predicted membrane protein [Function unknown]

Probab=85.17  E-value=9.1  Score=36.73  Aligned_cols=83  Identities=22%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhhhhcCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q 016720          160 SSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGM  239 (384)
Q Consensus       160 s~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGv  239 (384)
                      +.+..+|.....--++ .+-|+++..-.  ++|+ -.+.|      -.+++.++-.+.+.+|..+.+ ..-++..+++|+
T Consensus         4 si~lAAl~sSlvElvE-a~aIa~avg~~--~~wr-~al~g------a~lglalvl~l~lvlGk~L~l-vPln~lqiv~gv   72 (236)
T COG4280           4 SIFLAALGSSLVELVE-AGAIAAAVGNI--YKWR-LALIG------AVLGLALVLILTLVLGKLLYL-VPLNYLQIVSGV   72 (236)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhhhhh--cccc-HHHHH------HHHHHHHHHHHHHHHccceee-eechHHHHHHHH
Confidence            3344455545555554 55555554433  2233 33333      345556666667778877763 445888999999


Q ss_pred             HHHHHHHHHhHhhh
Q 016720          240 TLLVIGAMGIKEAS  253 (384)
Q Consensus       240 lLIvLGl~~L~~~~  253 (384)
                      +|+..|---+|+..
T Consensus        73 LLllFG~rw~Rsav   86 (236)
T COG4280          73 LLLLFGYRWIRSAV   86 (236)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987776543

>PRK10621 hypothetical protein; Provisional

Probab=81.20  E-value=54  Score=31.62  Aligned_cols=25  Identities=8%  Similarity=0.026  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016720          355 TEKLTWASSLVAIALGFAILISQFF  379 (384)
Q Consensus       355 ~~~L~~~s~~vsI~lGll~Ilr~~~  379 (384)
                      +++++++...+.+++|+.++++..+
T Consensus       232 ~~~lr~~~~~ll~~~~i~~~~~~~~  256 (266)
T PRK10621        232 QKLIRPMIVIVSAVMSAKLLYDSHG  256 (266)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHHh
Confidence            4677788888888999998877655

>COG1279 Lysine efflux permease [General function prediction only]

Probab=81.11  E-value=53  Score=31.43  Aligned_cols=130  Identities=17%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhh-ccchHHHH-
Q 016720          227 EVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVH-GLQPDALM-  304 (384)
Q Consensus       227 e~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilh-GL~P~glL-  304 (384)
                      +.+.....+.-.++|+..|...++.+.+....   .     ..      .  +..+. ..++....=+.- =|-|-.|+ 
T Consensus        66 p~l~~i~~~~G~~FLl~yg~~a~~~a~~~~~~---~-----~~------~--~~~~~-~~~~~l~~alavT~LNPhvyLD  128 (202)
T COG1279          66 PWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQ---L-----QV------A--EFTKL-KLKKVLLFALAVTLLNPHVYLD  128 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhh---c-----cc------c--ccccc-cHHHHHHHHHHHHHhCchhhhh
Confidence            35555666667788888998888776542110   0     00      0  01111 112222111111 12376654 


Q ss_pred             --HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          305 --MVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALK--DRIPRITEKLTWASSLVAIALGFAILIS  376 (384)
Q Consensus       305 --aLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~--~r~~~l~~~L~~~s~~vsI~lGll~Ilr  376 (384)
                        +++++.+..-   +..==..|.+|++.+=...=...++.-+.++  .+.|+..|.++.++++++..+++.+..+
T Consensus       129 tvvliGs~~~~~---~~~~k~~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~  201 (202)
T COG1279         129 TVVLIGSLAAQL---SDEAKWFFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ  201 (202)
T ss_pred             hHhhhhhhhhhc---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence              4445443210   0000124677776654443333333333332  2457899999999999999999987654

>COG5486 Predicted metal-binding integral membrane protein [Function unknown]

Probab=80.35  E-value=9.9  Score=37.42  Aligned_cols=193  Identities=18%  Similarity=0.210  Sum_probs=104.5

Q ss_pred             hhhHHhHHHHHHHHHHHhhhhcCCCCCchhhhhh-hccC-CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhh-----hh
Q 016720          152 RLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAP-LSIG-RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKD-----RL  224 (384)
Q Consensus       152 ~~~~~~lls~~~~gflLG~lHaL~gPDHLAAi~~-Ls~~-r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~-----~l  224 (384)
                      ++.....+...|+=-.+|+.  +.-.-|..-... +.+. +.+-+.+.....+.-|-.+.-..+|+++-.+..     .+
T Consensus        78 s~v~aa~~~~mW~vMmvamM--lPsaaPmi~~ya~i~r~~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al  155 (283)
T COG5486          78 SIVPAAALLLMWTVMMVAMM--LPSAAPMILLYAEIGRTAAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFAL  155 (283)
T ss_pred             chhHHHHHHHHHHHHHHHHh--CccccHHHHHHHHHHHHHHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55555566666665555532  111222222221 2211 111244555777777877777777777744422     22


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccc-cccccCCcccccccccchhHHHHHhhcc--chH
Q 016720          225 HIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVS-VYEALDNPAVGKKKIGFATFATGIVHGL--QPD  301 (384)
Q Consensus       225 ~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h-~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~  301 (384)
                      .-+....+..+..|++|++-|+|-+-..++.   +.  +++..... ..+     |..-+..+...|-+|+-||+  .+|
T Consensus       156 ~~p~~s~~~~l~gg~~L~vAGlYQft~LK~~---CL--~qCrtPl~fl~s-----hw~fr~~p~ga~~LGlrhGlyClGC  225 (283)
T COG5486         156 LGPILSPLSGLAGGLTLLVAGLYQFTTLKHA---CL--SQCRTPLSFLFS-----HWRFRAKPVGAFRLGLRHGLYCLGC  225 (283)
T ss_pred             ccchhcchhhHHHHHHHHHhhhhhhccHHHH---HH--HHccchHHHHHH-----hcCcccCcchhhhhccccccchHHH
Confidence            2356778888999999999998776432221   10  01111100 001     12222344579999999999  365


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720          302 ALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI  375 (384)
Q Consensus       302 glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il  375 (384)
                      -.             +=++.|++=|++.+.-|.+++.+.-.      ||...-.|++.++++.+.+..|.+.+.
T Consensus       226 CW-------------ALm~llfv~Gvmnl~Wma~ial~vli------EK~~~~Gr~~srv~gall~a~gaw~l~  280 (283)
T COG5486         226 CW-------------ALMLLLFVVGVMNLLWMALIALLVLI------EKQTSPGRRLSRVAGALLAAAGAWLLV  280 (283)
T ss_pred             HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH------HhccCcccchHHHHHHHHHHHHHhhcc
Confidence            31             11223344466667777776665332      233234577777888888888876554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00