Citrus Sinensis ID: 016725

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
MATPAYQVAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
ccccccccEEEEEccccEEEEcccccccccccccEEEEEEccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEEEccEEEccccccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccccEEEccccccccccEEEEEccccccEEEEEcccccEEEEEEccccccccccccccccccEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEccEEEcccccccEEEEEcccccEEEEEccccEEEEcccccccccccccccccccccccccccEEEEccccccccEEEEEEccccccccEEEEEEccccEEEEEcccccccccccccccccccccEEEEcccc
ccccccEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHcccEEEEEEEcccEEEEEEEEccccEEEEEccccccccccccccccccccEHHHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHccccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccHHHHHHHHcccEEEEEEEccccccccEEEEEEcccEEEEEccccccccccccccccccccccEEEEEccc
matpayqvahlspilrpdiinerngkrnllgrevngtplycrSLQGIRIIQAAAGAGRTmlisdagqvyafgkdsfgeaeygvqgtklvtspqlVESLKNIFVVQAAIGNFFTAVLSregrvytfswgndarlghhtepndvephpllgtlenipvVQIAAGYCYLLALacqpsgmavysvgcglggklghgsrtdekhprLIEQFQLLNLQPVVVAAGAWHAAVvgqdgrvctwgwgrygclghgneecesVPKVVQALNDVKAIhvatgdyttfvvsedgdvysfgcgesaslghnaiadgqgnrhanvltPQLVTSLKQVNERVVQISLTNSIYWNAHTFaltesgklyafgagdkgqlGIELVNnqtergnpervdidls
matpayqvahlspilrpdiinerngkrnllgrevngtPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELvnnqtergnpervdidls
MATPAYQVAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLqgiriiqaaagagrTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIaagycyllalacQPSGMAVYSVgcglggklghgSRTDEKHPRLIEQFQLLNLQPvvvaagawhaavvGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
*******VAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGS****KHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELV*****************
*ATPAYQVAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL*
MATPAYQVAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
**TPAYQVAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI*LVNNQTERGNPERVDID**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATPAYQVAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query384 2.2.26 [Sep-21-2011]
O95714 4834 E3 ubiquitin-protein liga yes no 0.638 0.050 0.351 3e-28
Q4U2R1 4836 E3 ubiquitin-protein liga yes no 0.794 0.063 0.292 4e-28
Q9FN03 440 Ultraviolet-B receptor UV no no 0.796 0.695 0.318 5e-28
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.833 0.065 0.278 2e-26
Q15751 4861 Probable E3 ubiquitin-pro no no 0.705 0.055 0.317 5e-24
Q15034 1050 Probable E3 ubiquitin-pro no no 0.742 0.271 0.301 1e-23
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.791 0.287 0.281 2e-23
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.791 0.287 0.278 2e-23
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.791 0.287 0.275 3e-23
Q8BK67520 Protein RCC2 OS=Mus muscu no no 0.697 0.515 0.293 1e-21
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function desciption
 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 150/282 (53%), Gaps = 37/282 (13%)

Query: 89  VTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 148
           V  P   E L N+ V Q A       +LSR GRVYT ++ +D           + P  L+
Sbjct: 439 VIGPIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNSDT----------LAPQ-LV 487

Query: 149 GTLENIPVVQIAA---GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ 205
             L +  +V+IAA   G+ Y LALA   +   VYS GCG GG+LGHG     + P++I  
Sbjct: 488 QGLASRNIVKIAAHSDGHHY-LALA---ATGEVYSWGCGDGGRLGHGDTVPLEEPKVISA 543

Query: 206 F--QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDV 263
           F  +      V +A G+ ++A +  +G + TWG G YG LGHG+ E E++P +V  L  +
Sbjct: 544 FSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGL 603

Query: 264 KAIHVA--TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLK 321
           K I VA  +GD  T  V+E+G V+S+G G+   LG    +DG         TP+L+  L+
Sbjct: 604 KVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGG-SDG-------CKTPKLIEKLQ 655

Query: 322 QVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLG 363
            ++  VV++   +       + ALT+ G++Y++G GD  +LG
Sbjct: 656 DLD--VVKVRCGSQF-----SIALTKDGQVYSWGKGDNQRLG 690
E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
225424560 534 PREDICTED: probable E3 ubiquitin-protein 0.828 0.595 0.899 0.0
359473138 526 PREDICTED: probable E3 ubiquitin-protein 0.828 0.604 0.899 0.0
224135099 538 predicted protein [Populus trichocarpa] 0.901 0.643 0.901 0.0
255547958 537 RCC1 and BTB domain-containing protein, 0.901 0.644 0.905 0.0
147784312 541 hypothetical protein VITISV_008041 [Viti 0.812 0.576 0.900 0.0
356567464 535 PREDICTED: probable E3 ubiquitin-protein 0.901 0.646 0.890 0.0
357463175 535 RCC1 domain-containing protein [Medicago 0.901 0.646 0.867 1e-180
357463177432 RCC1 domain-containing protein [Medicago 0.901 0.800 0.867 1e-179
449435009 534 PREDICTED: probable E3 ubiquitin-protein 0.914 0.657 0.849 1e-175
357160277 534 PREDICTED: probable E3 ubiquitin-protein 0.919 0.661 0.836 1e-174
>gi|225424560|ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 1 [Vitis vinifera] gi|296081404|emb|CBI16837.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/347 (89%), Positives = 335/347 (96%)

Query: 38  PLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVES 97
           P   RSL+GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVT+PQLVES
Sbjct: 188 PRQIRSLEGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTTPQLVES 247

Query: 98  LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVV 157
           LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDA+LGH TE ND+EPHPLLG LENIPVV
Sbjct: 248 LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAKLGHQTEANDLEPHPLLGALENIPVV 307

Query: 158 QIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA 217
           QIAAGYCYLLALACQP+GM+VYSVGCGLGGKLGHG+RTDEKHPRLIEQF++LNLQP+VVA
Sbjct: 308 QIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGTRTDEKHPRLIEQFRILNLQPMVVA 367

Query: 218 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFV 277
           AGAWHAAVVG+DGRVCTWGWGRYGCLGHGNEECESVPKVV+AL +VKA+HVATGDYTTFV
Sbjct: 368 AGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESVPKVVEALINVKAVHVATGDYTTFV 427

Query: 278 VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIY 337
           VS+DGDVYSFGCGES+SLGHN   DGQGNRHAN+L+P+LVTSLKQ+ ER+VQISLTNSIY
Sbjct: 428 VSDDGDVYSFGCGESSSLGHNNGPDGQGNRHANILSPELVTSLKQIKERMVQISLTNSIY 487

Query: 338 WNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS 384
           WNAHTFALTE+GKLYAFGAGDKGQLG+ELV NQTERGNPERVDIDLS
Sbjct: 488 WNAHTFALTETGKLYAFGAGDKGQLGVELVANQTERGNPERVDIDLS 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473138|ref|XP_003631252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135099|ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|222868979|gb|EEF06110.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255547958|ref|XP_002515036.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] gi|223546087|gb|EEF47590.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147784312|emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567464|ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|357463175|ref|XP_003601869.1| RCC1 domain-containing protein [Medicago truncatula] gi|355490917|gb|AES72120.1| RCC1 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357463177|ref|XP_003601870.1| RCC1 domain-containing protein [Medicago truncatula] gi|355490918|gb|AES72121.1| RCC1 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449435009|ref|XP_004135288.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] gi|449494867|ref|XP_004159669.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357160277|ref|XP_003578713.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query384
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 0.893 0.644 0.720 5.2e-129
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.734 0.577 0.313 3.8e-26
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.833 0.088 0.260 6.6e-22
UNIPROTKB|F1M560 3643 Herc2 "Protein Herc2" [Rattus 0.833 0.087 0.260 6.7e-22
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.833 0.066 0.260 7.1e-22
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.833 0.066 0.260 7.1e-22
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.833 0.066 0.260 9e-22
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.833 0.066 0.260 9.1e-22
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.833 0.066 0.261 3.9e-21
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.833 0.066 0.261 3.9e-21
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
 Identities = 247/343 (72%), Positives = 269/343 (78%)

Query:    42 RSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNI 101
             RSL              TMLISD G+VYA GK+SFGEAEYG QGTK VT+PQLV SLKNI
Sbjct:   190 RSLQGVRIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNI 249

Query:   102 FVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXX 161
             FVVQAAIGN+FTAVLSREG+VYTFSWGND RLGH TE  DVEP PLLG LEN+PVVQI  
Sbjct:   250 FVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENVPVVQIAA 309

Query:   162 XXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXX 221
                       QP+GM+VYSV           SRTDEK+PR+IEQFQ+LNLQP        
Sbjct:   310 GYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVAAGAW 369

Query:   222 XXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSED 281
                  GQDGRVCTWGWGRYGCLGHGNEECESVPKVV+ L+ VKA+HVATGDYTTFVVS+D
Sbjct:   370 HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDD 429

Query:   282 GDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAH 341
             GDVYSFGCGESASLGH+   D QGNRHANVL+P +VTSLKQVNER+VQISLTNSIYWNAH
Sbjct:   430 GDVYSFGCGESASLGHHPSFDEQGNRHANVLSPTVVTSLKQVNERMVQISLTNSIYWNAH 489

Query:   342 TFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS 384
             TFALTESGKL+AFGAGD+GQLG EL  NQ ER  PE+VDIDLS
Sbjct:   490 TFALTESGKLFAFGAGDQGQLGTELGKNQKERCVPEKVDIDLS 532
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 5e-23
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-22
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-20
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.001
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =   99 bits (249), Expect = 5e-23
 Identities = 84/359 (23%), Positives = 146/359 (40%), Gaps = 67/359 (18%)

Query: 42  RSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTK-------------- 87
             +    II+ A G   ++ +   G +Y++G +  G     +                  
Sbjct: 99  GRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYE 158

Query: 88  LVTSPQLVE----SLKNIFVVQAAIGNFFTAVLSREGRVYTFSWG----NDARLGHHTEP 139
           L ++P  V     +  ++ VV+ A G   + +L+ +GRVY  SWG     +   G +   
Sbjct: 159 LESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVY--SWGTFRCGELGQGSYKNS 216

Query: 140 ND--VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE 197
               ++  PL    + I  VQ+AAG  +L+AL    +   VY  G    G+LG       
Sbjct: 217 QKTSIQFTPLKVPKKAI--VQLAAGADHLIALT---NEGKVYGWGSNQKGQLG------- 264

Query: 198 KHPRLIEQFQL--LNLQPVV------VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEE 249
                 E+ +L  L   P        VA G  H+  + +DG +  WG   +G LG G++ 
Sbjct: 265 --RPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDG 322

Query: 250 CE----SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQG 305
                 + P   Q L+ V    ++ G+  + ++ +DG +Y+FG G+   LG         
Sbjct: 323 EIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITID- 381

Query: 306 NRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 364
                V TP  ++       ++ Q++         H  A T+ G +Y++G G+ G LG 
Sbjct: 382 -----VSTPTKLSVAI----KLEQVACGT-----HHNIARTDDGSVYSWGWGEHGNLGN 426

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 384
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.88
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.87
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.28
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.18
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.08
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.05
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.88
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.82
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 94.47
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.39
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.77
KOG0315311 consensus G-protein beta subunit-like protein (con 93.7
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 93.46
KOG0315311 consensus G-protein beta subunit-like protein (con 93.44
KOG0646 476 consensus WD40 repeat protein [General function pr 92.55
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.94
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 88.41
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 86.53
KOG0649325 consensus WD40 repeat protein [General function pr 84.58
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-50  Score=369.28  Aligned_cols=341  Identities=25%  Similarity=0.402  Sum_probs=279.5

Q ss_pred             cceecccCCcccccCCCC----CCcceeeccc--CCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCC------
Q 016725           17 PDIINERNGKRNLLGREV----NGTPLYCRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQ------   84 (384)
Q Consensus        17 ~~~~~~g~~~~g~~g~~~----~~~P~~~~~~--~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~------   84 (384)
                      ..+|.||.|-.+++|+++    ...|++.+..  +...|++++||..|+++|+.||+||+||.|..|+||....      
T Consensus        68 ~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~  147 (476)
T COG5184          68 ASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQ  147 (476)
T ss_pred             eeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccc
Confidence            578999999777776642    3678888776  6788999999999999999999999999999999998761      


Q ss_pred             --------CceeeecCEEecC----CCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCc----ccccccc
Q 016725           85 --------GTKLVTSPQLVES----LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND----VEPHPLL  148 (384)
Q Consensus        85 --------~~~~~~~p~~i~~----~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~----~~~~~i~  148 (384)
                              +......|..++.    ....++++++||++++++|+++|+||.||.+..+.++.+.....    ..++++.
T Consensus       148 ~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~  227 (476)
T COG5184         148 NNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLK  227 (476)
T ss_pred             cccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeee
Confidence                    2234566777776    23558999999999999999999999999999888888844433    3355555


Q ss_pred             cccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeC
Q 016725          149 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQ  228 (384)
Q Consensus       149 ~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~  228 (384)
                      .+  +..|+++++|..|.++|+.  +| ++|.||+|..||||....+...++..+..+-. -..|+.|+||.+|++||++
T Consensus       228 v~--~~~i~qla~G~dh~i~lt~--~G-~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~-i~~i~~vacG~~h~~al~~  301 (476)
T COG5184         228 VP--KKAIVQLAAGADHLIALTN--EG-KVYGWGSNQKGQLGRPTSERLKLVVLVGDPFA-IRNIKYVACGKDHSLALDE  301 (476)
T ss_pred             cC--chheeeeccCCceEEEEec--CC-cEEEecCCcccccCCchhhhcccccccCChhh-hhhhhhcccCcceEEEEcC
Confidence            42  5679999999999999998  99 99999999999999998888777777654321 1237889999999999999


Q ss_pred             CCCEEEEeCCCCCccCCCCC----CCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCC
Q 016725          229 DGRVCTWGWGRYGCLGHGNE----ECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQ  304 (384)
Q Consensus       229 ~g~vy~wG~n~~gqlg~~~~----~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~  304 (384)
                      +|++|+||.|.++|||.+..    .....|+....+.+..|..++++..|+++|..+|.+|.||++.++|||.++     
T Consensus       302 ~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~-----  376 (476)
T COG5184         302 DGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQE-----  376 (476)
T ss_pred             CCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcc-----
Confidence            99999999999999999821    122345555556677899999999999999999999999999999999986     


Q ss_pred             CCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725          305 GNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD  380 (384)
Q Consensus       305 ~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~  380 (384)
                       ..+.....|..+..    ..++.+++|     |..|+++.+++|++|.||++++|+||+++  ....+..|+.|+
T Consensus       377 -~~~~~~~~~~~ls~----~~~~~~v~~-----gt~~~~~~t~~gsvy~wG~ge~gnlG~g~--~~~~~~~pt~i~  440 (476)
T COG5184         377 -EITIDVSTPTKLSV----AIKLEQVAC-----GTHHNIARTDDGSVYSWGWGEHGNLGNGP--KEADVLVPTLIR  440 (476)
T ss_pred             -cceeecCCcccccc----ccceEEEEe-----cCccceeeccCCceEEecCchhhhccCCc--hhhhcccccccc
Confidence             12344444444442    267999999     99999999999999999999999999997  456677787776

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-18
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 2e-04
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 3e-17
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-10
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-17
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-10
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-17
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-10
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-17
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-10
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 3e-08
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 4e-08
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-05
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 3e-04
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 21/285 (7%)
Query: 86  TKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVE 143
           T+ V++P L+ES++++F+ + A+  G      LS EG VY++    D +LGH        
Sbjct: 90  TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDR 149
Query: 144 PHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLI 203
           P  ++ +L  I VV +                  +Y+               D+  P+L+
Sbjct: 150 PR-VIESLRGIEVVDVAAGGAHSACVTAAGD---LYTWGKGRYGRLGHSDSEDQLKPKLV 205
Query: 204 EQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDV 263
           E  Q   +                 D  V +WG G YG LG G  +   VP  + +L  +
Sbjct: 206 EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGL 265
Query: 264 KAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQV 323
             + V  G   +  +++ G VY++G G+   LGH +          +V  P+ V  L+  
Sbjct: 266 GVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHVRRPRQVQGLQ-- 315
Query: 324 NERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVN 368
            ++V+ I+ T S+    H    TE G++Y +G  D+GQLG    N
Sbjct: 316 GKKVIAIA-TGSL----HCVCCTEDGEVYTWGDNDEGQLGDGTTN 355
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query384
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-90
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-72
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-64
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-35
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-90
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-72
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-65
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-65
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-62
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-55
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-50
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-44
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-39
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-64
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-52
3of7_A 473 Regulator of chromosome condensation; beta-propell 8e-49
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-15
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-59
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-57
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-56
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 5e-49
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 5e-41
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-23
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-20
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-13
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  277 bits (710), Expect = 2e-90
 Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 29/346 (8%)

Query: 37  TPLYCRSLQGIRIIQAAAGAGRTMLISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLV 95
           +P    +L G +I+    GA  T+  S +G +VY++G   FG    G   +  + +P  +
Sbjct: 58  SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGR--LGHGNSSDLFTPLPI 115

Query: 96  ESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 155
           ++L  I + Q A G+     ++ EG V ++    + +LG     + + P  +    E I 
Sbjct: 116 KALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIR 174

Query: 156 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV 215
           +  +AAG  +  A+        +Y  G G  G LG G RTD   P  +        + + 
Sbjct: 175 IKMVAAGAEHTAAVT---EDGDLYGWGWGRYGNLGLGDRTDRLVPERVT---STGGEKMS 228

Query: 216 -VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYT 274
            VA G  H   V   G + T+GW +YG LGHG+ E   +P  ++AL++     ++ G   
Sbjct: 229 MVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRH 288

Query: 275 TFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTN 334
           T  ++ DG +Y +G  +   +G           + +  +P  V      +++VVQ+S   
Sbjct: 289 TMALTSDGKLYGWGWNKFGQVGVGN--------NLDQCSPVQVRFPD--DQKVVQVSCGW 338

Query: 335 SIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 380
                 HT A+TE   ++A+G G  GQLGI       +R  P+ ++
Sbjct: 339 R-----HTLAVTERNNVFAWGRGTNGQLGI---GESVDRNFPKIIE 376
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.02
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.55
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.49
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.06
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.96
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.68
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.65
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 94.3
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.78
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 92.31
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 91.55
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 90.3
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 89.84
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 88.53
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 88.08
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 87.68
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 87.41
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 86.1
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 84.66
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 84.47
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 82.73
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 82.36
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 82.06
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 80.41
4g56_B357 MGC81050 protein; protein arginine methyltransfera 80.15
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=5e-67  Score=507.39  Aligned_cols=339  Identities=28%  Similarity=0.461  Sum_probs=311.1

Q ss_pred             CcceecccCCcccccCCCC---CCcceeecccCCCcEEEEEeCCCeeEEEEcCC-CEEEEecCCCCCcccCCCCceeeec
Q 016725           16 RPDIINERNGKRNLLGREV---NGTPLYCRSLQGIRIIQAAAGAGRTMLISDAG-QVYAFGKDSFGEAEYGVQGTKLVTS   91 (384)
Q Consensus        16 ~~~~~~~g~~~~g~~g~~~---~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g-~vy~~G~n~~gqlG~~~~~~~~~~~   91 (384)
                      ...+|.||.|..||||.++   ...|+++..+++.+|++|+||..|+++|++++ +||+||.|.+||||.++  ......
T Consensus        34 ~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~--~~~~~~  111 (406)
T 4d9s_A           34 GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN--SSDLFT  111 (406)
T ss_dssp             TTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSS--CCCEEE
T ss_pred             CCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCC--CCcccc
Confidence            5789999999999999864   45788898888889999999999999999986 99999999999999997  566778


Q ss_pred             CEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEe
Q 016725           92 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALAC  171 (384)
Q Consensus        92 p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~  171 (384)
                      |.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++.. +.+.+|++|+||..|+++|++
T Consensus       112 p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~hs~alt~  190 (406)
T 4d9s_A          112 PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTE  190 (406)
T ss_dssp             EEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEET
T ss_pred             ceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-cCCCcEEEEecCCCeEEEEeC
Confidence            8889888888999999999999999999999999999999999999888888998886 778899999999999999998


Q ss_pred             eCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCc
Q 016725          172 QPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECE  251 (384)
Q Consensus       172 ~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~  251 (384)
                        +| +||+||.|.++|||.+.......|.++..+  ...+|++|+||.+|+++|+++|+||+||.|.++|||.++....
T Consensus       191 --~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~  265 (406)
T 4d9s_A          191 --DG-DLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH  265 (406)
T ss_dssp             --TS-CEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred             --CC-CEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc
Confidence              99 999999999999999998888888888754  4568999999999999999999999999999999999998888


Q ss_pred             cCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEe
Q 016725          252 SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQIS  331 (384)
Q Consensus       252 ~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~  331 (384)
                      ..|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.        ......|..+..+  ...+|++|+
T Consensus       266 ~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~p~~v~~~--~~~~v~~va  335 (406)
T 4d9s_A          266 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--------NLDQCSPVQVRFP--DDQKVVQVS  335 (406)
T ss_dssp             EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------SSCEEEEEEECCG--GGCCEEEEE
T ss_pred             cccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC--------CCCCccCEEEecc--CCCcEEEEE
Confidence            999999999999999999999999999999999999999999999997        5667788888766  567899999


Q ss_pred             eeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725          332 LTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD  380 (384)
Q Consensus       332 ~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~  380 (384)
                      |     |..|+++|+++|+||+||.|++||||++.   ..+...|++|+
T Consensus       336 ~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~  376 (406)
T 4d9s_A          336 C-----GWRHTLAVTERNNVFAWGRGTNGQLGIGE---SVDRNFPKIIE  376 (406)
T ss_dssp             E-----CSSEEEEEETTSCEEEEECCTTSTTCSSS---CCCEEEEEECG
T ss_pred             e-----CCCeEEEEeCCCCEEEecCCCCCccCCCC---CCCCcCCEEee
Confidence            9     99999999999999999999999999994   45566787765
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 384
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-25
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-19
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-18
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-15
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-07
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 75/388 (19%), Positives = 117/388 (30%), Gaps = 83/388 (21%)

Query: 59  TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 118
               ++ G V   G+   G+   G +       P LV   ++  VVQA  G   T  LS+
Sbjct: 8   RSHSTEPGLVLTLGQGDVGQLGLG-ENVMERKKPALVSIPED--VVQAEAGGMHTVCLSK 64

Query: 119 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAV 178
            G+VY+F   ++  LG  T     E  P    L+   V   A               +  
Sbjct: 65  SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124

Query: 179 YSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWG 238
                      G     +     ++     L++  V VA+G  H  ++  DG + T G G
Sbjct: 125 SFRDNN-----GVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCG 179

Query: 239 RYGCLGHGNEECESVP----------------KVVQALNDVKAIHVATGDYTTFVVSEDG 282
             G LG   E   +                  K   +   V+      G Y TF +S +G
Sbjct: 180 EQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG 239

Query: 283 DVYSFGCGESASLGH--------------------------------------------- 297
            VY FG      LG                                              
Sbjct: 240 HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLG 299

Query: 298 --NAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFG 355
                  G G        P L++ L      V  ++   S       +A+T+ G+++A+G
Sbjct: 300 RAEYGRLGLGEGAEEKSIPTLISRLP----AVSSVACGAS-----VGYAVTKDGRVFAWG 350

Query: 356 AGDKGQLGIELVNNQTERGNPERVDIDL 383
            G   QLG        +  +P  +    
Sbjct: 351 MGTNYQLGT---GQDEDAWSPVEMMGKQ 375
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query384
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.98
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.73
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.9
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.13
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 89.66
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 89.32
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 84.12
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 80.83
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-54  Score=416.26  Aligned_cols=340  Identities=23%  Similarity=0.332  Sum_probs=275.4

Q ss_pred             CcceecccCCcccccCCCC----CCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeec
Q 016725           16 RPDIINERNGKRNLLGREV----NGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTS   91 (384)
Q Consensus        16 ~~~~~~~g~~~~g~~g~~~----~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~   91 (384)
                      .+++|.||.|..||||.++    ...|.+|..++  +|++|+||..|+++|+++|+||+||.|.+||||.++........
T Consensus        14 ~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~   91 (401)
T d1a12a_          14 PGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV   91 (401)
T ss_dssp             CBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGS
T ss_pred             CCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccccccccccc
Confidence            4899999999999999853    45778887766  69999999999999999999999999999999999744444444


Q ss_pred             CEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEe
Q 016725           92 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALAC  171 (384)
Q Consensus        92 p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~  171 (384)
                      |..+  ....+|++|+||..|+++++++|+||+||.+..++.+.........+........+.+|++|++|..|+++++.
T Consensus        92 ~~~~--~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~  169 (401)
T d1a12a_          92 PGKV--ELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTA  169 (401)
T ss_dssp             CEEC--CCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEET
T ss_pred             cccc--ccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccceeeeec
Confidence            4444  44668999999999999999999999999887655444332222222111111445679999999999999998


Q ss_pred             eCCCCEEEEEecCCCCcccCCCCCCCC-----------CCeEEeecc---cCCCCcEEEEcCCcceEEEeCCCCEEEEeC
Q 016725          172 QPSGMAVYSVGCGLGGKLGHGSRTDEK-----------HPRLIEQFQ---LLNLQPVVVAAGAWHAAVVGQDGRVCTWGW  237 (384)
Q Consensus       172 ~~~G~~vy~~G~n~~gqlg~~~~~~~~-----------~p~~i~~~~---~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~  237 (384)
                        +| ++|+||.|.++|||........           .|..+....   ....+|.+|+||..|+++|+++|++|.||.
T Consensus       170 --~g-~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~  246 (401)
T d1a12a_         170 --DG-DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL  246 (401)
T ss_dssp             --TS-CEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEEC
T ss_pred             --CC-cccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecc
Confidence              99 9999999999999987542221           344433211   234578999999999999999999999999


Q ss_pred             CCCCccCCCCCCCccCcEEeeecC--CCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCe
Q 016725          238 GRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQ  315 (384)
Q Consensus       238 n~~gqlg~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~  315 (384)
                      |.++++|.........+..+..+.  ...++.+++|..|+++++++|+||+||.+.+||||.++       .......|.
T Consensus       247 n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~-------~~~~~~~P~  319 (401)
T d1a12a_         247 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE-------GAEEKSIPT  319 (401)
T ss_dssp             CTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT-------TCCCEEEEE
T ss_pred             cceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCc-------ccccccCCE
Confidence            999999998877777777665543  35699999999999999999999999999999999987       445666787


Q ss_pred             eeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEee
Q 016725          316 LVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDI  381 (384)
Q Consensus       316 ~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~~  381 (384)
                      .++.+    .+|++|+|     |..|+++|+++|+||+||+|.+||||++   ..+.+..|++|..
T Consensus       320 ~i~~~----~~i~~Is~-----G~~hs~alt~dG~v~~WG~n~~GQLG~G---~~~~~~~P~~v~~  373 (401)
T d1a12a_         320 LISRL----PAVSSVAC-----GASVGYAVTKDGRVFAWGMGTNYQLGTG---QDEDAWSPVEMMG  373 (401)
T ss_dssp             ECCSS----SSEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSS---SCSCEEEEEECCS
T ss_pred             EcCCC----CCeEEEEe-----eCCEEEEEeCCCeEEEEecCCCCCCCCC---CCCCEecCEEeec
Confidence            77654    57999999     9999999999999999999999999999   4466677887754
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure