Citrus Sinensis ID: 016848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHcccccccccccccccccccccccEEEEEccEEcccccccccccccEEEEEccccccHHHHHHHHHHHHcccccHHHHHHHcccccEEEEEEccccEEcccEEEEEEEEcccccccccccccccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEEEccccEEEEEEEEccccccEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEccccEEEEEEEEEEcccEEEEEcEEEEEEccccEEEEEEEEEEEcccEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEccccEcccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccHHHcHcccccccEEEEEccccccHHcccccccccEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccEEEEEccccEEcccEEEEEEEcccccccccccccccccEEEEEccccEEEEEEEEEcccccccEEEccEEEEEEccccEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEccEEEEccEEEEEcccccEEEEEEEEEEcccEEEcccEEEEccccccccHHHEEEEEEccccEEEEccEEEEcc
Coil and Loop (DISEMBL)
msalsfsphlhininrnpkltpkrrakpnkiRVSLqttfpqatfsdpFVIQLAESledslpssssslpqplplqklrdsssqtllstpwpsrkdepfrftdtsmikssqiqpitrpsssldvstdaqfpsLVLIDGFiqnsalnlsnlpdgvyvgsLLGVSDGIMKRVSDFIsefqcgdlfwsingmgapdlgviyvpagckvenpiYLKYLSveggnvdskklpisnpRVVVLVEEGGEVGIIEEFvgkegndcywaNSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYelvevstggklsrhnvhvqqlgpdteteLSSFHLLVSDQTQDLHSRllldhprgycrQLHKCIVAHSlgqavfdgnvkvnr
Flexible Loop (DISEMBL)
msalsfsphlhininrnpkltpkrraKPNKIRVSLQttfpqatfsDPFVIQLAESLEDSLPSSSSSLPqplplqklrdsssqtllstpwpsrkdepFRFTDTsmikssqiqpitrpssslDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGgnvdskklpisnPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSlgqavfdgnvkvnr
Low Complexity Region (SEG)
MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDslpssssslpqplplqKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRvvvlveeggevgiieefvgkegNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR
Disordered region (IsUnstruct)
*************************************TFPQATFSDPFVIQ***************************************************************************QFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQ*********LSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGN*****
Disordered Region (DISOPRED)
***********************************************FVIQLAESLEDSLP**********PLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVN*
Disordered Region (DISEMBL)
MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESL*************PLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIK****************STDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR
Disordered Region (DISPRO)
*SALSFSPHLHININRN*******************TTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q9LQK7	475	Protein ABCI7, chloroplas	yes	no	0.947	0.76	0.650	1e-136
Q55792	453	UPF0051 protein slr0076 O	N/A	no	0.771	0.649	0.322	1e-37
P77689	423	FeS cluster assembly prot	N/A	no	0.685	0.617	0.246	2e-08

>sp|Q9LQK7|AB7I_ARATH Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/372 (65%), Positives = 289/372 (77%), Gaps = 11/372 (2%)

Query: 13  NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLP 72
           N++  PKL   RR     + V       QA+FSDPFV+QLAESLEDSL +S SS      
Sbjct: 15  NLSSKPKLKSNRRTTSTSVSVR-----AQASFSDPFVLQLAESLEDSLSASPSSSLP--- 66

Query: 73  LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
           LQ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF 
Sbjct: 67  LQRIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126

Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
           + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGA
Sbjct: 127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186

Query: 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG 249
           PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPRV VLVEEGGE+GI+EEFVG
Sbjct: 187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEIGIVEEFVG 246

Query: 250 KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
           K+    YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S YELVEVSTGG
Sbjct: 247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306

Query: 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
           KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS G
Sbjct: 307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366

Query: 370 QAVFDGNVKVNR 381
           QAVFDGNV+VNR
Sbjct: 367 QAVFDGNVRVNR 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q55792|Y076_SYNY3 UPF0051 protein slr0076 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0076 PE=3 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 167/319 (52%), Gaps = 25/319 (7%)

Query: 77  RDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQF-------P 129
           R  ++  L S   P ++DE ++FTD S +K+  I  +     SLDV+    F        
Sbjct: 44  RQGAADLLGSLRLPHKRDEEWQFTDLSELKA--IDFVAAGKVSLDVAAAENFYLPEAHQS 101

Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCG-DLFWSINGMG 188
            LV I+GF      N ++LP  +   S   ++    +++++++ +   G ++F ++N  G
Sbjct: 102 RLVFINGFFTPELSNTNDLPSAITCQSWTNLAAHQREQLANYLGQKTDGNEVFSNLNTAG 161

Query: 189 APDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFV 248
             D  V+++PA  ++++PI+L +L+V    VD   + +  PR++V+VE   +V I E + 
Sbjct: 162 MTDSAVVWIPANTELKSPIHLLFLTV----VDPTPIMVQ-PRLLVVVENNAQVTIAESY- 215

Query: 249 GKEGNDC--------YWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGY 300
           G    +C        Y+ N V E+ +G+  +V H   Q  S ++ HI  TA+ Q   S Y
Sbjct: 216 GAISTNCTDRPQQQPYFNNIVSEIYLGENAQVTHIRNQRDSGDSFHIATTAIAQGKQSRY 275

Query: 301 ELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLH 360
            L++V+ G KLSRHN+ + Q    T+TE  +  +L   Q  D HS + L+HP G   QLH
Sbjct: 276 RLIDVNLGAKLSRHNLQMTQQEEATKTEFLALTILAGRQVSDTHSTIALNHPHGATNQLH 335

Query: 361 KCIVAHSLGQAVFDGNVKV 379
           KCIV     QAVF G V V
Sbjct: 336 KCIV-DEYAQAVFSGKVLV 353

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P77689|SUFD_ECOLI FeS cluster assembly protein SufD OS=Escherichia coli (strain K12) GN=sufD PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 52/313 (16%)

Query: 87  TPWPSRKDEPFRFTDTSMIKSSQ-------IQPITRPSSSLDVSTDAQFPSLVLIDGFIQ 139
           T  P+RK E +++T    + +SQ       I P  R + +L + +      LV +DG   
Sbjct: 39  TGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDS----VRLVFVDG--- 91

Query: 140 NSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCG-------DLFWSINGMGAPDL 192
                        YV +L   ++G    VS  I++ + G       ++F  +    A  +
Sbjct: 92  ------------RYVPALSDATEGSGYEVS--INDDRQGLPDAIQAEVFLHLTESLAQSV 137

Query: 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEG 252
             I V  G +   P+ L +++     V  +++  ++ R  + + EG E  +IE FV    
Sbjct: 138 THIAVKRGQRPAKPLLLMHIT---QGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSL-- 192

Query: 253 NDC-YWANSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYELVEVSTG 308
           ND  ++  +   + +     ++H  L  +   S + AH         TA  +  +    G
Sbjct: 193 NDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFL---LG 249

Query: 309 GKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVAH 366
           G + RHN   Q  G ++   ++S  + V ++  D  +R  L+H +G+C  RQLHK IV+ 
Sbjct: 250 GAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVSD 307

Query: 367 SLGQAVFDGNVKV 379
             G+AVF+G + V
Sbjct: 308 K-GRAVFNGLINV 319

The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake from extracellular iron chelators under iron limitation. Required for the stability of the fhuF protein.

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
225427242	495	PREDICTED: protein ABCI7, chloroplastic-	0.955	0.735	0.660	1e-137
297742116	480	unnamed protein product [Vitis vinifera]	0.955	0.758	0.660	1e-137
147775510	593	hypothetical protein VITISV_028794 [Viti	0.955	0.613	0.660	1e-136
297851692	476	hypothetical protein ARALYDRAFT_473442 [	0.950	0.760	0.653	1e-135
18398463	475	protein ABCI7 [Arabidopsis thaliana] gi|	0.947	0.76	0.650	1e-135
21554655	475	unknown [Arabidopsis thaliana]	0.947	0.76	0.647	1e-134
255588981	484	Protein sufD, putative [Ricinus communis	0.973	0.766	0.673	1e-133
449461525	496	PREDICTED: protein ABCI7, chloroplastic-	0.979	0.752	0.62	1e-132
224138876	456	predicted protein [Populus trichocarpa]	0.918	0.767	0.710	1e-127
359475767	527	PREDICTED: LOW QUALITY PROTEIN: protein	0.955	0.690	0.645	1e-124

>gi|225427242|ref|XP_002278544.1| PREDICTED: protein ABCI7, chloroplastic-like [Vitis vinifera]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/392 (66%), Positives = 316/392 (80%), Gaps = 28/392 (7%)

Query: 1   MSALSFSPHLHININRNPKL----------TPKRRAKPNKIRVSLQTTFPQATFSDPFVI 50
           M+A   SPHL +N    PKL          TPK R+ P KIR         A FSDPFV+
Sbjct: 16  MAATLLSPHLLLN----PKLSIQNSASKFPTPKSRSTP-KIR---------AAFSDPFVL 61

Query: 51  QLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
           Q+AESLEDSL SSS+S P PL  QKLRD+SSQT+LSTPWPSRKDEPFRFTDTS+I+ SQ+
Sbjct: 62  QIAESLEDSLSSSSTSSPPPL--QKLRDASSQTVLSTPWPSRKDEPFRFTDTSLIRYSQV 119

Query: 111 QPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGV-SDGIMKRVS 169
            PI+ P +S+ +STD QFP+L ++DG I  S  NLS LP GV+VGSL  + S+ I K+VS
Sbjct: 120 TPISHPPTSIAISTDTQFPNLSIVDGHIVYSLSNLSQLPTGVFVGSLSSLPSETITKKVS 179

Query: 170 DFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229
           +F++ F+ GDLFWS+NG+G PD+ V+YVPAGC+VE P+++ Y SVEGG++ SKKLP+SNP
Sbjct: 180 EFVANFE-GDLFWSLNGLGTPDMAVVYVPAGCRVEMPLHIVYYSVEGGDIGSKKLPVSNP 238

Query: 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKW 289
           RV VLVEEGGE+G+IEE+VG   N CYWAN+V EVVIG+G KV+HSY+Q+QSL+AAHIKW
Sbjct: 239 RVFVLVEEGGEIGVIEEYVGVGENKCYWANTVTEVVIGEGAKVKHSYIQSQSLSAAHIKW 298

Query: 290 TAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL 349
           T+V+Q ++S YEL+EVSTGGKLSRHNV++QQ+GPDT TELS+FHL V DQTQDLHSRL+L
Sbjct: 299 TSVQQGSSSSYELIEVSTGGKLSRHNVNIQQVGPDTVTELSAFHLSVGDQTQDLHSRLVL 358

Query: 350 DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           DHPRGY RQLHKCIVAHSLGQAVFDGN+KVNR
Sbjct: 359 DHPRGYSRQLHKCIVAHSLGQAVFDGNIKVNR 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742116|emb|CBI33903.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/392 (66%), Positives = 316/392 (80%), Gaps = 28/392 (7%)

Query: 1   MSALSFSPHLHININRNPKL----------TPKRRAKPNKIRVSLQTTFPQATFSDPFVI 50
           M+A   SPHL +N    PKL          TPK R+ P KIR         A FSDPFV+
Sbjct: 1   MAATLLSPHLLLN----PKLSIQNSASKFPTPKSRSTP-KIR---------AAFSDPFVL 46

Query: 51  QLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
           Q+AESLEDSL SSS+S P PL  QKLRD+SSQT+LSTPWPSRKDEPFRFTDTS+I+ SQ+
Sbjct: 47  QIAESLEDSLSSSSTSSPPPL--QKLRDASSQTVLSTPWPSRKDEPFRFTDTSLIRYSQV 104

Query: 111 QPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGV-SDGIMKRVS 169
            PI+ P +S+ +STD QFP+L ++DG I  S  NLS LP GV+VGSL  + S+ I K+VS
Sbjct: 105 TPISHPPTSIAISTDTQFPNLSIVDGHIVYSLSNLSQLPTGVFVGSLSSLPSETITKKVS 164

Query: 170 DFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229
           +F++ F+ GDLFWS+NG+G PD+ V+YVPAGC+VE P+++ Y SVEGG++ SKKLP+SNP
Sbjct: 165 EFVANFE-GDLFWSLNGLGTPDMAVVYVPAGCRVEMPLHIVYYSVEGGDIGSKKLPVSNP 223

Query: 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKW 289
           RV VLVEEGGE+G+IEE+VG   N CYWAN+V EVVIG+G KV+HSY+Q+QSL+AAHIKW
Sbjct: 224 RVFVLVEEGGEIGVIEEYVGVGENKCYWANTVTEVVIGEGAKVKHSYIQSQSLSAAHIKW 283

Query: 290 TAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL 349
           T+V+Q ++S YEL+EVSTGGKLSRHNV++QQ+GPDT TELS+FHL V DQTQDLHSRL+L
Sbjct: 284 TSVQQGSSSSYELIEVSTGGKLSRHNVNIQQVGPDTVTELSAFHLSVGDQTQDLHSRLVL 343

Query: 350 DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           DHPRGY RQLHKCIVAHSLGQAVFDGN+KVNR
Sbjct: 344 DHPRGYSRQLHKCIVAHSLGQAVFDGNIKVNR 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775510|emb|CAN69419.1| hypothetical protein VITISV_028794 [Vitis vinifera]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/392 (66%), Positives = 315/392 (80%), Gaps = 28/392 (7%)

Query: 1   MSALSFSPHLHININRNPKL----------TPKRRAKPNKIRVSLQTTFPQATFSDPFVI 50
           M+A   SPHL +N    PKL          TPK R+ P KIR         A FSDPFV+
Sbjct: 16  MAASLLSPHLLLN----PKLSIQTSASKFPTPKSRSTP-KIR---------AAFSDPFVL 61

Query: 51  QLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
           Q+AESLEDSL SSS+S P PL  QKLRD+SSQT+LSTPWPSRKDEPFRFTDTS+I+ SQ+
Sbjct: 62  QIAESLEDSLSSSSTSSPPPL--QKLRDASSQTVLSTPWPSRKDEPFRFTDTSLIRYSQV 119

Query: 111 QPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGV-SDGIMKRVS 169
            PI+ P +S+ +STD QFP+L ++DG I  S  NLS LP GV+VGSL  + S+ I K VS
Sbjct: 120 TPISHPPTSIAISTDTQFPNLSIVDGHIVYSLSNLSQLPTGVFVGSLSSLPSETITKXVS 179

Query: 170 DFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229
           +F++ F+ GDLFWS+NG+G PD+ V+YVPAGC+VE P+++ Y SVEGG++ SKKLP+SNP
Sbjct: 180 EFVANFE-GDLFWSLNGLGTPDMAVVYVPAGCRVEMPLHIVYYSVEGGDIGSKKLPVSNP 238

Query: 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKW 289
           RV VLVEEGGE+G+IEE+VG   N CYWAN+V EVVIG+G KV+HSY+Q+QSL+AAHIKW
Sbjct: 239 RVFVLVEEGGEIGVIEEYVGVGENKCYWANTVTEVVIGEGAKVKHSYIQSQSLSAAHIKW 298

Query: 290 TAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL 349
           T+V+Q ++S YEL+EVSTGGKLSRHNV++QQ+GPDT TELS+FHL V DQTQDLHSRL+L
Sbjct: 299 TSVQQGSSSSYELIEVSTGGKLSRHNVNIQQVGPDTVTELSAFHLSVGDQTQDLHSRLVL 358

Query: 350 DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           DHPRGY RQLHKCIVAHSLGQAVFDGN+KVNR
Sbjct: 359 DHPRGYSRQLHKCIVAHSLGQAVFDGNIKVNR 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851692|ref|XP_002893727.1| hypothetical protein ARALYDRAFT_473442 [Arabidopsis lyrata subsp. lyrata] gi|297339569|gb|EFH69986.1| hypothetical protein ARALYDRAFT_473442 [Arabidopsis lyrata subsp. lyrata]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/372 (65%), Positives = 290/372 (77%), Gaps = 10/372 (2%)

Query: 13  NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLP 72
           N++  PKL   RR     + +       QA+FSDPFV+QLAESLEDSL +S SS   PL 
Sbjct: 15  NLSSKPKLKSNRRTTSTSVSIR-----AQASFSDPFVLQLAESLEDSLSASPSSSSLPL- 68

Query: 73  LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
            Q++RDSS++TLLSTPWPSRKDEPFRFTDTS I+ SQI+P++   R S  LD  T+ QFP
Sbjct: 69  -QRIRDSSAETLLSTPWPSRKDEPFRFTDTSFIRFSQIEPVSTHQRNSEILDNLTETQFP 127

Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
           + V+IDGF+ N  +  S+LPDGVY GS  G+ D +  RVS+FI  F  GDLFWSINGMGA
Sbjct: 128 NAVIIDGFVSNLTIGPSDLPDGVYFGSFSGLPDELTNRVSEFIGNFDSGDLFWSINGMGA 187

Query: 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG 249
           PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPR  VLVEEGGE+GI+EEFVG
Sbjct: 188 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRGFVLVEEGGEIGIVEEFVG 247

Query: 250 KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
           K+    YW N VLEVV+ K GK++HSYLQ +S+ +AH+KWT VRQE  S YELVEVSTGG
Sbjct: 248 KDEEGFYWTNPVLEVVVQKNGKLKHSYLQKESMASAHVKWTFVRQEAESEYELVEVSTGG 307

Query: 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
           KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHSR++LDHPRG  RQLHKCIVAHS G
Sbjct: 308 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSRIVLDHPRGSSRQLHKCIVAHSSG 367

Query: 370 QAVFDGNVKVNR 381
           QAVFDGNV+VNR
Sbjct: 368 QAVFDGNVRVNR 379

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398463|ref|NP_564404.1| protein ABCI7 [Arabidopsis thaliana] gi|75180162|sp|Q9LQK7.1|AB7I_ARATH RecName: Full=Protein ABCI7, chloroplastic; AltName: Full=ABC transporter I family member 7; Short=ABC transporter ABCI.7; Short=AtABCI7; AltName: Full=Non-intrinsic ABC protein 6; AltName: Full=Plastid SufD-like protein; Flags: Precursor gi|8920626|gb|AAF81348.1|AC007767_28 Contains an uncharacterized protein family (UPF0051) domain PF|01458 [Arabidopsis thaliana] gi|115646721|gb|ABJ17094.1| At1g32500 [Arabidopsis thaliana] gi|332193373|gb|AEE31494.1| protein ABCI7 [Arabidopsis thaliana]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/372 (65%), Positives = 289/372 (77%), Gaps = 11/372 (2%)

Query: 13  NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLP 72
           N++  PKL   RR     + V       QA+FSDPFV+QLAESLEDSL +S SS      
Sbjct: 15  NLSSKPKLKSNRRTTSTSVSVR-----AQASFSDPFVLQLAESLEDSLSASPSSSLP--- 66

Query: 73  LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
           LQ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF 
Sbjct: 67  LQRIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126

Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
           + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGA
Sbjct: 127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186

Query: 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG 249
           PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPRV VLVEEGGE+GI+EEFVG
Sbjct: 187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEIGIVEEFVG 246

Query: 250 KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
           K+    YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S YELVEVSTGG
Sbjct: 247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306

Query: 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
           KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS G
Sbjct: 307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366

Query: 370 QAVFDGNVKVNR 381
           QAVFDGNV+VNR
Sbjct: 367 QAVFDGNVRVNR 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554655|gb|AAM63647.1| unknown [Arabidopsis thaliana]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/372 (64%), Positives = 288/372 (77%), Gaps = 11/372 (2%)

Query: 13  NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLP 72
           N++  PKL   RR     + V       QA+FSDPFV+QLAESLEDSL +S SS      
Sbjct: 15  NLSSKPKLKSNRRTTSTSVSVR-----AQASFSDPFVLQLAESLEDSLSASPSSSLP--- 66

Query: 73  LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
           LQ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF 
Sbjct: 67  LQRIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126

Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
           + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGA
Sbjct: 127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186

Query: 190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG 249
           PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPRV VLVEEGGE+ I+EEFVG
Sbjct: 187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEISIVEEFVG 246

Query: 250 KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
           K+    YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S YELVEVSTGG
Sbjct: 247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306

Query: 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
           KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS G
Sbjct: 307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366

Query: 370 QAVFDGNVKVNR 381
           QAVFDGNV+VNR
Sbjct: 367 QAVFDGNVRVNR 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588981|ref|XP_002534787.1| Protein sufD, putative [Ricinus communis] gi|223524572|gb|EEF27596.1| Protein sufD, putative [Ricinus communis]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/389 (67%), Positives = 309/389 (79%), Gaps = 18/389 (4%)

Query: 1   MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQ-TTFP--QATFSDPFVIQLAESLE 57
           MSAL F P ++       +L PK +   +K++ SL  TT P  QA FSDPFV+QLAE+LE
Sbjct: 1   MSALVFVPPVYTFTRITTRLKPKPK---HKVKTSLSLTTTPVIQAGFSDPFVLQLAETLE 57

Query: 58  DSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRP- 116
           DSL  S S       LQKLRDS S++LLSTPWPSR+DEPFRFTDTS+IK SQI PI++P 
Sbjct: 58  DSLSPSPS-------LQKLRDSCSESLLSTPWPSRRDEPFRFTDTSLIKQSQIHPISKPP 110

Query: 117 --SSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLG-VSDGIMKRVSDFIS 173
                 D+S DAQ P++V++DGFI NS  N  N PDGV+VGS+L    D I K VS +  
Sbjct: 111 PIDHLTDISKDAQLPNIVIVDGFILNSMSNSLNFPDGVFVGSMLNDPEDKIAKLVSKYFD 170

Query: 174 EFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVV 233
           +FQ GDLFWSING+GAPD+ VIYVPAG +VENPI+L+Y+SVEGG   S KLP+SNPRV+V
Sbjct: 171 DFQWGDLFWSINGLGAPDVAVIYVPAGVRVENPIHLRYVSVEGGEEGSNKLPVSNPRVLV 230

Query: 234 LVEEGGEVGIIEEFVG-KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAV 292
           +VEEGGEVGIIEEFV    G+ CYWANSVLEV+I +G KV+HSY+Q+QSLN+AHIKWTAV
Sbjct: 231 VVEEGGEVGIIEEFVSIGSGDKCYWANSVLEVMIEEGAKVKHSYIQSQSLNSAHIKWTAV 290

Query: 293 RQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHP 352
           +Q+++S YELVEVSTGGKLSRHN+HVQQLGPDT TELS+FHL VS QTQDLHSRL+LDHP
Sbjct: 291 QQKSSSTYELVEVSTGGKLSRHNLHVQQLGPDTSTELSTFHLCVSSQTQDLHSRLVLDHP 350

Query: 353 RGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           R Y RQLHKCIVAHSLGQAVFDGNVKVNR
Sbjct: 351 RAYSRQLHKCIVAHSLGQAVFDGNVKVNR 379

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461525|ref|XP_004148492.1| PREDICTED: protein ABCI7, chloroplastic-like [Cucumis sativus] gi|449521999|ref|XP_004168016.1| PREDICTED: protein ABCI7, chloroplastic-like [Cucumis sativus]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/400 (62%), Positives = 305/400 (76%), Gaps = 27/400 (6%)

Query: 1   MSALSFSPHLHININRNPKLTP------------KRRAKPNKI---RVSLQTTFPQATFS 45
           M+  +F+PH+     R P  TP            KR+ K N I   RVSLQ + P  + S
Sbjct: 1   MATFTFTPHIG---GRLP--TPSLSVSSSYSSTSKRKPKFNSITTTRVSLQASTP--SLS 53

Query: 46  DPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMI 105
           DPFV+QLAE+LEDSL SSSSS   P PLQKLR+SS++ LLSTPWPSR+DEPFRFTD S I
Sbjct: 54  DPFVLQLAETLEDSLSSSSSSS-SPFPLQKLRESSAENLLSTPWPSRRDEPFRFTDVSFI 112

Query: 106 KSSQIQPITRPSSSLDVST---DAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGV-S 161
           K SQI PI+ P    ++S+   + QF ++V++DG   NS  NL+ LP+GVYVGS + + S
Sbjct: 113 KQSQIHPISNPPQFSELSSIPLETQFANVVIVDGHFVNSVSNLTELPNGVYVGSFIDLPS 172

Query: 162 DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDS 221
           + + KRVS+F+     GDLFWSING+GAPDL V+YVPAGCKVENPI+ +Y S+ GG+  S
Sbjct: 173 ESVGKRVSEFVDGKFAGDLFWSINGVGAPDLTVVYVPAGCKVENPIHFRYYSINGGDEGS 232

Query: 222 KKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQS 281
           K+L +SNPRV+VLVE GGE+ IIEEF+  +G   YW+N VLEVVIG GGKV+HSY+QNQS
Sbjct: 233 KELAVSNPRVLVLVENGGEIEIIEEFLSGDGGKSYWSNPVLEVVIGSGGKVKHSYIQNQS 292

Query: 282 LNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQ 341
           LNAAHIKWT+V+QE+ S YELVE+STGG+LSRHNVH+QQLGP+T TELS+ HL + +QTQ
Sbjct: 293 LNAAHIKWTSVQQESTSAYELVEISTGGRLSRHNVHIQQLGPETTTELSTLHLSIGNQTQ 352

Query: 342 DLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           DLHS L+LDHPRGY RQLHKCIVA+  GQAVFDGNVKVNR
Sbjct: 353 DLHSSLVLDHPRGYSRQLHKCIVANPQGQAVFDGNVKVNR 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138876|ref|XP_002326712.1| predicted protein [Populus trichocarpa] gi|222834034|gb|EEE72511.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/366 (71%), Positives = 295/366 (80%), Gaps = 16/366 (4%)

Query: 23  KRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQ 82
           K++ KP    +S  T   QA+FSDPFV+QLAE+LEDSL  S S       LQ+LRDSSS+
Sbjct: 3   KQKQKPKSFSLS-TTPITQASFSDPFVLQLAETLEDSLSPSVS-------LQRLRDSSSE 54

Query: 83  TLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLD----VSTDAQFPSLVLIDGFI 138
           +LLST WPSRKDEPFRFTDTS I+ SQI PIT+P   LD    ++ D   PS+V+ DGF+
Sbjct: 55  SLLSTSWPSRKDEPFRFTDTSFIRLSQIVPITKPPQ-LDYLPSINEDTLLPSIVIADGFV 113

Query: 139 QNSALNLSNLPDGVYVGSLLG-VSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYV 197
            NS   LS LPDGVYVGSLL   SD I +RV +F+ +F+ GDLFWSING+GA D+ V+YV
Sbjct: 114 LNSMSKLSTLPDGVYVGSLLSDSSDRIAERVLEFVGDFEWGDLFWSINGLGAHDMTVVYV 173

Query: 198 PAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND--C 255
           PAG KVENPI+ KY+SVEGG   SKKLP+SNPRV V+VEEGGEVGIIEEFV KEGND   
Sbjct: 174 PAGVKVENPIHFKYVSVEGGEKGSKKLPVSNPRVFVVVEEGGEVGIIEEFVSKEGNDDRY 233

Query: 256 YWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHN 315
           YWAN VLEVVIGKG KVRHSY+Q+QSLN+AHIKWTAVRQE AS YELVEVSTGGKLSRHN
Sbjct: 234 YWANPVLEVVIGKGAKVRHSYVQSQSLNSAHIKWTAVRQEAASTYELVEVSTGGKLSRHN 293

Query: 316 VHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDG 375
           +HVQQLGPDT TELS+FHL V DQTQDLHSRL+LDHPRG  +QLHKCIVAHS GQAVFDG
Sbjct: 294 LHVQQLGPDTATELSTFHLSVGDQTQDLHSRLILDHPRGRSQQLHKCIVAHSQGQAVFDG 353

Query: 376 NVKVNR 381
           NVKVNR
Sbjct: 354 NVKVNR 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475767|ref|XP_003631753.1| PREDICTED: LOW QUALITY PROTEIN: protein ABCI7, chloroplastic-like [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/398 (64%), Positives = 311/398 (78%), Gaps = 34/398 (8%)

Query: 1   MSALSFSPHLHININRNPKL----------TPKRRAKPNKIRVSLQTTFPQATFSDPFVI 50
           M+A   SPHL +N    PKL          TPK R+ P KIR         ATFSDPFV 
Sbjct: 1   MAATLLSPHLLLN----PKLSIQTSASKFPTPKSRSTP-KIR---------ATFSDPFVP 46

Query: 51  QLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
           Q+AESLEDSL SSS+S P PL  QKLRD+SSQT+LSTPWPSRKDEPFRFTDTS+I+ SQ+
Sbjct: 47  QIAESLEDSLSSSSTSSPPPL--QKLRDASSQTVLSTPWPSRKDEPFRFTDTSLIRYSQV 104

Query: 111 QPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGV-SDGIMKRVS 169
            PI+ P +S+ +STD QFP+L ++DG I  S  NLS LP GV+VGSL  + S+ I KRVS
Sbjct: 105 TPISHPPTSIAISTDTQFPNLCIVDGHIIYSLSNLSQLPTGVFVGSLSSLPSETITKRVS 164

Query: 170 DFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229
           +F++ F+ GDLFWS+NG+G  D+ V+YVPAGC+VE P+++ Y SVEGG++  KKLP+SNP
Sbjct: 165 EFVANFE-GDLFWSLNGLGTLDMVVVYVPAGCRVEMPLHIVYXSVEGGDIGFKKLPVSNP 223

Query: 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEV------VIGKGGKVRHSYLQNQSLN 283
           RV VLVEEGGE+G IEEFVG   N CYWAN+V EV      VIG+G KV+HSY+Q+QSL+
Sbjct: 224 RVFVLVEEGGEIGEIEEFVGGGENKCYWANAVTEVRIIIILVIGEGAKVKHSYIQSQSLS 283

Query: 284 AAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDL 343
           AAHIKWT+V+Q ++  YEL+EVSTGGKLSRHNV++QQ+GPDT TELS+FHL V D TQDL
Sbjct: 284 AAHIKWTSVQQGSSGSYELIEVSTGGKLSRHNVNIQQVGPDTVTELSAFHLSVGDPTQDL 343

Query: 344 HSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           H+RL+LDHPRGY RQLHKCIVAHSLGQAVFDGN+KVNR
Sbjct: 344 HTRLVLDHPRGYFRQLHKCIVAHSLGQAVFDGNIKVNR 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2033734	475	ABCI7 "AT1G32500" [Arabidopsis	0.947	0.76	0.586	2.6e-111
UNIPROTKB|Q83BX9	426	sufD "SufD" [Coxiella burnetii	0.742	0.664	0.234	1.5e-07
TIGR_CMR|CBU_1358	426	CBU_1358 "conserved hypothetic	0.742	0.664	0.234	1.5e-07
UNIPROTKB|P77689	423	sufD "SufD component of SufBCD	0.727	0.654	0.234	7e-06
UNIPROTKB|Q60A79	434	sufD "FeS assembly protein Suf	0.317	0.278	0.283	1.7e-05

TAIR|locus:2033734 ABCI7 "AT1G32500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 218/372 (58%), Positives = 261/372 (70%)

Query:    13 NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDXXXXXXXXXXXXXX 72
             N++  PKL   RR     + V  Q     A+FSDPFV+QLAESLED              
Sbjct:    15 NLSSKPKLKSNRRTTSTSVSVRAQ-----ASFSDPFVLQLAESLEDSLSASPSSSLPLQ- 68

Query:    73 XXKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
               ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF 
Sbjct:    69 --RIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126

Query:   130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
             + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGA
Sbjct:   127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186

Query:   190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRXXXXXXXXXXXXXXXXXXX 249
             PDL VIYVP GCKVENPIYL+Y S E G+ +SK+LP+SNPR                   
Sbjct:   187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEIGIVEEFVG 246

Query:   250 XXXNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309
                   YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S YELVEVSTGG
Sbjct:   247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306

Query:   310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 369
             KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS G
Sbjct:   307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366

Query:   370 QAVFDGNVKVNR 381
             QAVFDGNV+VNR
Sbjct:   367 QAVFDGNVRVNR 378

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;RCA;IDA

GO:0006810 "transport" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009536 "plastid" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q83BX9 sufD "SufD" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 71/303 (23%), Positives = 123/303 (40%)

Query:    82 QTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPS---LVLIDGFI 138
             +T L   +P RK E +++T+ + I           ++  D++ D   P    LV I+G  
Sbjct:    28 KTFLLHGFPHRKVENWKYTNVTPIAEQAFS--FGENTDTDIA-DFILPDAYRLVFINGHF 84

Query:   139 QNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVP 198
                  +LS LP  V + SL  +   I   ++    ++Q    F  +N     D   + VP
Sbjct:    85 APRLSDLSGLPSAVQMTSLKNIQRDIQNELA-IKKDYQTA--FSLMNDALFQDGLFLQVP 141

Query:   199 AGCKVENPIYLKYLSVEGGNVDSKKLPISNPRXXXXXXXXXXXXXXXXXXXXXXNDCYWA 258
               C +E PI+L +LS       +  L +S  R                         Y+ 
Sbjct:   142 KDCYLEKPIHLIHLSKP-----TASLTMSQIRHVILLEENAKAVIFEEYQGTN-GVAYFN 195

Query:   259 NSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHV 318
             N V ++ +     +    LQ +   A HI  T++ Q   S      ++ G +LSR +++ 
Sbjct:   196 NVVTQIKVNSAAHLELYKLQQEGDRAFHIANTSIHQNRHSQVTSGHIAMGSELSRDDLNY 255

Query:   319 QQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVAHSLGQAVFDGN 376
                      +L  F+ L      D H+R+  DH   +C  +Q +K ++A    +AVF+G 
Sbjct:   256 SLDEAGASCQLLGFYYLNDGCHVDNHTRI--DHRVSHCTSQQNYKGVLADK-SRAVFNGK 312

Query:   377 VKV 379
             + V
Sbjct:   313 IIV 315

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1358 CBU_1358 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 71/303 (23%), Positives = 123/303 (40%)

Query:    82 QTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPS---LVLIDGFI 138
             +T L   +P RK E +++T+ + I           ++  D++ D   P    LV I+G  
Sbjct:    28 KTFLLHGFPHRKVENWKYTNVTPIAEQAFS--FGENTDTDIA-DFILPDAYRLVFINGHF 84

Query:   139 QNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVP 198
                  +LS LP  V + SL  +   I   ++    ++Q    F  +N     D   + VP
Sbjct:    85 APRLSDLSGLPSAVQMTSLKNIQRDIQNELA-IKKDYQTA--FSLMNDALFQDGLFLQVP 141

Query:   199 AGCKVENPIYLKYLSVEGGNVDSKKLPISNPRXXXXXXXXXXXXXXXXXXXXXXNDCYWA 258
               C +E PI+L +LS       +  L +S  R                         Y+ 
Sbjct:   142 KDCYLEKPIHLIHLSKP-----TASLTMSQIRHVILLEENAKAVIFEEYQGTN-GVAYFN 195

Query:   259 NSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHV 318
             N V ++ +     +    LQ +   A HI  T++ Q   S      ++ G +LSR +++ 
Sbjct:   196 NVVTQIKVNSAAHLELYKLQQEGDRAFHIANTSIHQNRHSQVTSGHIAMGSELSRDDLNY 255

Query:   319 QQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVAHSLGQAVFDGN 376
                      +L  F+ L      D H+R+  DH   +C  +Q +K ++A    +AVF+G 
Sbjct:   256 SLDEAGASCQLLGFYYLNDGCHVDNHTRI--DHRVSHCTSQQNYKGVLADK-SRAVFNGK 312

Query:   377 VKV 379
             + V
Sbjct:   313 IIV 315

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P77689 sufD "SufD component of SufBCD Fe-S cluster scaffold complex" [Escherichia coli K-12 (taxid:83333)]

 Score = 133 (51.9 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 72/307 (23%), Positives = 131/307 (42%)

Query:    82 QTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFPSLVLIDGFI 138
             Q LL T  P+RK E +++T    + +SQ   I     P     ++       LV +DG  
Sbjct:    34 QQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRY 93

Query:   139 QNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVP 198
               +   LS+  +G   G  + ++D   + + D I      ++F  +    A  +  I V 
Sbjct:    94 VPA---LSDATEGS--GYEVSINDD-RQGLPDAIQ----AEVFLHLTESLAQSVTHIAVK 143

Query:   199 AGCKVENPIYLKYLSVEGGNVDSKKLPISNPRXXXXXXXXXXXXXXXXXXXXXXNDC-YW 257
              G +   P+ L +++ +G  V  +++  ++ R                      ND  ++
Sbjct:   144 RGQRPAKPLLLMHIT-QG--VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSL--NDARHF 198

Query:   258 ANSVLEVVIGKGGKVRHSYL--QNQ-SLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH 314
               +   + +     ++H  L  +N  S + AH         TA  +  +    GG + RH
Sbjct:   199 TGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFL---LGGAVLRH 255

Query:   315 NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVAHSLGQAV 372
             N   Q  G ++   ++S  + V ++  D  +R  L+H +G+C  RQLHK IV+   G+AV
Sbjct:   256 NTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVSDK-GRAV 312

Query:   373 FDGNVKV 379
             F+G + V
Sbjct:   313 FNGLINV 319

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q60A79 sufD "FeS assembly protein SufD" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 108 (43.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 36/127 (28%), Positives = 58/127 (45%)

Query:   256 YWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI--KWTAVRQETASGYELVEVSTGGKLSR 313
             Y    V ++ +   G + H  LQ     A H    +  V ++   G+ L+  S GG L R
Sbjct:   212 YLGAVVNQIEVADNGGLNHYKLQLDGGRAYHFGGSYARVARDGRFGHHLL--SLGGLLVR 269

Query:   314 HNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVF 373
             + VH + LG   +TE++   L  + Q  D H R+  D P G  R  ++ I+     + VF
Sbjct:   270 NEVHAR-LGHAAQTEMNGVFLSENRQHVDNHIRVDHDEPHGSSRVSYRGIL-EDRSRGVF 327

Query:   374 DGNVKVN 380
              G + V+
Sbjct:   328 QGRIVVH 334

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQK7	AB7I_ARATH	No assigned EC number	0.6505	0.9475	0.76	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
pfam01458	230	pfam01458, UPF0051, Uncharacterized protein family	2e-36
TIGR01981	275	TIGR01981, sufD, FeS assembly protein SufD	2e-33
COG0719	412	COG0719, SufB, Cysteine desulfurase activator SufB	8e-32
PRK10948	424	PRK10948, PRK10948, cysteine desulfurase activator	2e-15

>gnl|CDD|216514 pfam01458, UPF0051, Uncharacterized protein family (UPF0051)

 Score =  132 bits (334), Expect = 2e-36
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 227 SNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAH 286
             PR +++VEEG EV IIE        D    N V E+++G+G +++++ +QN+   + H
Sbjct: 6   QFPRNLIIVEEGAEVTIIEGCASPGAGD-GLHNGVTEIIVGEGARLKYTKIQNEGKGSIH 64

Query: 287 IKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSR 346
              T VR E  +  E   VS GGKLSR++  V   G   E EL+  +L   DQ  D H++
Sbjct: 65  FATTRVRLEEDATLESTSVSLGGKLSRNDPDVDLNGEGAEAELNGVYLAKGDQHVDTHTK 124

Query: 347 LLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           +  + P    R L+K ++     + VF G +KV +
Sbjct: 125 VRHNGPNTRSRILYKGVLKDR-SRGVFRGKIKVEK 158

Length = 230

>gnl|CDD|233666 TIGR01981, sufD, FeS assembly protein SufD

 Score =  125 bits (316), Expect = 2e-33
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 10/188 (5%)

Query: 194 VIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGN 253
           V+Y+P G + E PI LK++      V         PR++++VEEG +  ++E  +  EG 
Sbjct: 9   VLYIPKGVEAEEPIELKFILNSENRV-------LAPRLLIVVEEGAKATVLERHLSGEG- 60

Query: 254 DCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSR 313
           D +  N V+E+ +G+   V    +Q  S  + H        E  +   L +V+ GGKLSR
Sbjct: 61  DAF-LNGVVEINVGENASVEFIKVQFLSATSFHFSNVRATLERDARVRLSDVNLGGKLSR 119

Query: 314 HNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVF 373
           H+  V   G   + E+   +     Q  D+H+ ++ + P      LH+ ++       VF
Sbjct: 120 HDTDVDLNGEGAKAEIKGLYFGDGSQHIDVHTNVIHNGPHTVSNILHRGVLD-DRAHGVF 178

Query: 374 DGNVKVNR 381
           +GN+ + +
Sbjct: 179 NGNIDIPK 186

This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 275

>gnl|CDD|223791 COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]

 Score =  123 bits (312), Expect = 8e-32
 Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 16/294 (5%)

Query: 90  PSRKDEPFRFT--DTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSN 147
           P+R+DE +     D     +       R          AQ  S+V+        A++   
Sbjct: 35  PTRRDELWELDFLDRLYYLAPGEASFKRLGIPDAEEVLAQCDSVVV------YHAVSGEL 88

Query: 148 LPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPI 207
            P+GV V  +L     ++K+           D F ++N     D   IYVP G +V  PI
Sbjct: 89  APEGVIVEDILKEHPDLVKKYFGKGVVPDDDDKFAALNAALFSDGTFIYVPKGVEVPTPI 148

Query: 208 YLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIG 267
            L ++             +   R +++VEEG E+ +IE      G+     N V+E+ +G
Sbjct: 149 QLYFIINGENTG------VQFERTLIIVEEGAEITVIEGCSAPVGSG-SLHNGVVEIFVG 201

Query: 268 KGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTET 327
           +   + ++ +QN S    H+   A  +E  +     +V+ G K++R    V+  G   + 
Sbjct: 202 ENASLTYTTVQNWSPVYNHLTKRAAVEEEDATVRWTQVTLGSKVTRKYPSVRLKGEGADG 261

Query: 328 ELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           EL S       Q  D+ ++++ + P      L K IV     + VF G + + +
Sbjct: 262 ELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVKDG-ARTVFRGLIDIRK 314

Length = 412

>gnl|CDD|236804 PRK10948, PRK10948, cysteine desulfurase activator complex subunit SufD; Provisional

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 77/308 (25%), Positives = 134/308 (43%), Gaps = 30/308 (9%)

Query: 82  QTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFP----SLVLIDGF 137
           Q +L    P+RK E +++T    + +SQ         S               LV +DG 
Sbjct: 35  QQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFSIAAEISPAQRDALALTIDAVRLVFVDGR 94

Query: 138 IQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYV 197
               +  LS+  +G Y    + ++D   + +   I      ++F  +    A  +  I +
Sbjct: 95  F---SPALSDSTEGPYQ---VSINDD-RQGLPAAI----QPEVFLHLTESLAQSVTHIRL 143

Query: 198 PAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYW 257
           P G +   P+YL +++ +G  V  ++L  ++ R  + + EG E  +IE FV       ++
Sbjct: 144 PRGQRPAKPLYLLHIT-QG--VAGEELNTAHYRHHLDLAEGAEATVIEHFVSLNEAR-HF 199

Query: 258 ANSVLEVVIGKGGKVRHSYL---QNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH 314
             + L + +     + H  L      S + AH      R   A  +  +    G  + RH
Sbjct: 200 TGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARAFSHSFL---LGAAVLRH 256

Query: 315 NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVAHSLGQAV 372
           N   Q  G ++   L+S  + V ++  D  +R  L+H +GYC  RQLHK IV+   G+AV
Sbjct: 257 NTSTQLNGENSTLRLNSLAMPVKNEVCD--TRTWLEHNKGYCNSRQLHKTIVSDK-GRAV 313

Query: 373 FDGNVKVN 380
           F+G +KV 
Sbjct: 314 FNGLIKVA 321

Length = 424

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
TIGR01980	448	sufB FeS assembly protein SufB. This protein, SufB	100.0
PRK11814	486	cysteine desulfurase activator complex subunit Suf	100.0
PRK10948	424	cysteine desulfurase activator complex subunit Suf	100.0
CHL00085	485	ycf24 putative ABC transporter	100.0
TIGR01981	366	sufD FeS assembly protein SufD, group 1. This prot	100.0
COG0719	412	SufB Cysteine desulfurase activator SufB [Posttran	100.0
PF01458	229	UPF0051: Uncharacterized protein family (UPF0051);	99.96
PF01458	229	UPF0051: Uncharacterized protein family (UPF0051);	98.71
PRK10948	424	cysteine desulfurase activator complex subunit Suf	98.18
TIGR01981	366	sufD FeS assembly protein SufD, group 1. This prot	98.09
TIGR01980	448	sufB FeS assembly protein SufB. This protein, SufB	98.05
COG0719	412	SufB Cysteine desulfurase activator SufB [Posttran	97.71
CHL00085	485	ycf24 putative ABC transporter	97.6
PRK11814	486	cysteine desulfurase activator complex subunit Suf	97.52
PF01774	209	UreD: UreD urease accessory protein; InterPro: IPR	87.86
COG0829	269	UreH Urease accessory protein UreH [Posttranslatio	86.56

>TIGR01980 sufB FeS assembly protein SufB

Probab=100.00  E-value=9.1e-56  Score=447.13  Aligned_cols=302  Identities=18%  Similarity=0.195  Sum_probs=265.1

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCCCccccccCCCCCCC----CCC------CCCCC-----CCCCcceE
Q 016848           69 QPLPLQKLRDSSSQTLLSTPWPS--RKDEPFRFTDTSMIKSSQIQPITR----PSS------SLDVS-----TDAQFPSL  131 (381)
Q Consensus        69 ~p~~l~~~R~~a~~~~~~l~~Pt--~k~E~WryT~l~~l~~~~~~~~~~----~~~------~~~~~-----~~~~~~~l  131 (381)
                      +|.||.++|++|++.|.++|||+  +|+|+|||||++.+...++.....    +..      ..+++     ..+.. ++
T Consensus        35 ep~wl~~~R~~A~~~~~~l~~P~~~~~~e~w~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~  113 (448)
T TIGR01980        35 EPDWMLDFRLRALELFEKMPMPTWGPDLSGIDYEDIVYYSKPDKKKATSWDEVPDEIKDTFEKLGIPEAERKALAGV-GA  113 (448)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCccccEEeecccccccCChhhCCHHHHHHHHHcCCChHHhhhcCce-EE
Confidence            79999999999999999999999  999999999998776543311111    111      01122     12333 59


Q ss_pred             EEECCEEcccccCCCCCCCCeEEEeccCCc---hhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEE
Q 016848          132 VLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIY  208 (381)
Q Consensus       132 vfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~  208 (381)
                      +|+||.+...+++.. .++||+++++.++.   ++++++|++.... ..+|+|++||+|++++|+|||||+|+++++||+
T Consensus       114 ~~~~~~~~~~ls~~l-~~~GV~~~~l~~a~~~~~~~v~~~l~~~~~-~~~~~f~aLn~A~~~~G~~i~Vp~g~~~~~Pi~  191 (448)
T TIGR01980       114 QYDSEVIYHNIKEDL-EEKGVIFCDMDTALKEYPDLVKEYFMSVVP-PSDNKFAALNGAVWSGGSFVYVPKGVRVDMPLQ  191 (448)
T ss_pred             EEcCEEEEEcchhHH-hcCCEEEecHHHHHHhCHHHHHHHHhccCC-CcccHHHhHhhcccCceEEEEECCCCEeCCCEE
Confidence            999999999887753 38899999999876   5779999987443 347899999999999999999999999999999


Q ss_pred             EEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEE
Q 016848          209 LKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIK  288 (381)
Q Consensus       209 i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~  288 (381)
                      ++|+.++.+       ..+++|++|++|+||+++|||+|.+......+++|+++||++++||+|+|+++|+|+.+++|+.
T Consensus       192 ~~~~~~~~~-------~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~~~A~v~~~~iq~~~~~~~~~~  264 (448)
T TIGR01980       192 TYFRINSEN-------TGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLV  264 (448)
T ss_pred             EEEEEcCCc-------cceeeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEcCCCEEEEEEEeecCCCeEEEE
Confidence            999876543       3678999999999999999999998632457899999999999999999999999999999999


Q ss_pred             EEEEEEcCCcEEEEEEEEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCC
Q 016848          289 WTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSL  368 (381)
Q Consensus       289 ~~~v~~~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~  368 (381)
                      ++++.++++|+|+|+.+.+|++++|+++.+.|.|++|+++++|++++.++|++|+++.++|.+|+|+|++++|||+. |+
T Consensus       265 ~~~~~~~~~a~~~~~~~~lG~~~s~~~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t~v~h~~p~t~s~~~~k~v~~-d~  343 (448)
T TIGR01980       265 TKRALVEENGTMEWVSGSIGSKITMKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISK-GG  343 (448)
T ss_pred             EEEEEEcCCCEEEEEEEEecCceEEEeceEEEEcCCcEEEEEEEEecCCCEEEEcceEEEEeCCCcEEEEEEEEEEC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             eEEEEEeEEEecC
Q 016848          369 GQAVFDGNVKVNR  381 (381)
Q Consensus       369 s~~VF~G~I~V~~  381 (381)
                      |++||+|+|+|.+
T Consensus       344 s~~vf~G~i~v~~  356 (448)
T TIGR01980       344 GKSTYRGLVKIGP  356 (448)
T ss_pred             cEEEEEEEEEECC
Confidence            9999999999975

This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.

>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional

Probab=100.00  E-value=2.7e-54  Score=439.25  Aligned_cols=302  Identities=16%  Similarity=0.162  Sum_probs=262.2

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCC---CCCCCCCCCCCccccccCC---CC-C-CCCCC------CCCCC--CC-------
Q 016848           69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSMIKSSQI---QP-I-TRPSS------SLDVS--TD-------  125 (381)
Q Consensus        69 ~p~~l~~~R~~a~~~~~~l~~Pt---~k~E~WryT~l~~l~~~~~---~~-~-~~~~~------~~~~~--~~-------  125 (381)
                      +|.||.++|++|++.|.++|||+   +|.|+|||||++.+...++   .+ . ..+..      ..+++  +.       
T Consensus        50 ep~Wl~~~R~~A~~~~~~l~~P~~~~~~~e~w~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  129 (486)
T PRK11814         50 EPEWMLEWRLKAYRHWLTMEEPHWAKVHYPPIDYQDISYYSAPKCKSKPKSLDEVDPELLETFEKLGIPLREQKRLAGRE  129 (486)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcccceeeeccccccccCCcccCCHHHHHHHHhcCCCHHHHhhhhccc
Confidence            79999999999999999999999   8999999999987765433   11 0 01111      01122  11       


Q ss_pred             CCcceEEEECCEEcccccCCCCCCCCeEEEeccCCc---hhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcE
Q 016848          126 AQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCK  202 (381)
Q Consensus       126 ~~~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~  202 (381)
                      ... +++|.+|.+...+++.. .++||+++++.+|.   ++++++|+++... ..+++|++||.|++++|+|||||+|++
T Consensus       130 ~~~-~~v~~~~~~~~~ls~~l-~~~GV~~~~l~~a~~~~~~lv~~~l~~~~~-~~~~~f~aLn~A~~~~G~fi~Vp~gv~  206 (486)
T PRK11814        130 VAV-DAVFDSVSVATTFKEKL-AEAGVIFCSISEAIQEHPELVKKYLGSVVP-VNDNFFAALNSAVFSDGSFVYIPKGVR  206 (486)
T ss_pred             cce-EEEEcCeEEEeccCchh-hcCCeEEEcHHHHhhhhHHHHHHHhccCCC-CCchHHHHHHHhhcCCeEEEEECCCCc
Confidence            233 48999999998887754 38899999999876   5779999988443 347899999999999999999999999


Q ss_pred             eeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEec--
Q 016848          203 VENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ--  280 (381)
Q Consensus       203 ~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~--  280 (381)
                      ++.||++++..+...       ..+++|++|++|+||+++|||+|.++.....+++|+++||++++||+|+|+++|+|  
T Consensus       207 ~~~pi~~~~~~~~~~-------~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~  279 (486)
T PRK11814        207 CPMELSTYFRINAAN-------TGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYP  279 (486)
T ss_pred             eeEEEEEEEeecCCC-------cceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEEEEEEeecC
Confidence            999999988765432       36899999999999999999999986224568999999999999999999999999  


Q ss_pred             -----CCCceEEEEEEEE-EcCCcEEEEEEEEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCc
Q 016848          281 -----SLNAAHIKWTAVR-QETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRG  354 (381)
Q Consensus       281 -----~~~~~~~~~~~v~-~~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t  354 (381)
                           +.+++|+...++. ++++|+++|..+.+|++++|+++.+.|.|+||+++++|++++.++|++|+++.|.|.+|+|
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~~~~L~G~ga~~~~~gi~l~~~~q~~D~~t~v~H~~p~t  359 (486)
T PRK11814        280 GDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYPSCILRGDNSVGEFYSVALTNGHQQADTGTKMIHIGKNT  359 (486)
T ss_pred             ccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeecceEEecCCcEEEEEeEEeccCCEEEEeeEEEEEcCCCc
Confidence                 7888999999988 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          355 YCRQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       355 ~S~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      +|++++|||+. |+|++||+|+|+|.+
T Consensus       360 ~S~~~~k~V~~-d~s~~vF~G~i~V~~  385 (486)
T PRK11814        360 KSTIISKGISA-GHSQNTYRGLVKIMP  385 (486)
T ss_pred             EEEEEEEEEEc-CCcEEEEEEEEEECC
Confidence            99999999999 999999999999975

>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional

Probab=100.00  E-value=5.3e-54  Score=430.45  Aligned_cols=290  Identities=22%  Similarity=0.250  Sum_probs=246.8

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCCCCccccccCCCCCCCCC-C---CCCCC-CCCCcceEEEECCEEcccccCCCCCC
Q 016848           75 KLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPS-S---SLDVS-TDAQFPSLVLIDGFIQNSALNLSNLP  149 (381)
Q Consensus        75 ~~R~~a~~~~~~l~~Pt~k~E~WryT~l~~l~~~~~~~~~~~~-~---~~~~~-~~~~~~~lvfvnG~~~~~~s~~~~lp  149 (381)
                      ++|++||+.|.++|||++|+|+||||||+.+....|.+...+. .   ...++ ..+.+ ++||+||.+.+.+|+.. +|
T Consensus        28 ~~r~~a~~~~~~~glPt~k~E~WkyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lvfvnG~~~~~ls~~~-~~  105 (424)
T PRK10948         28 PQARQHWQQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFSIAAEISPAQRDALALTIDAV-RLVFVDGRFSPALSDST-EG  105 (424)
T ss_pred             HHHHHHHHHHHhCCCCCCCCcCcCCCCHHHHhccccccccccccChhhhhhccccCCce-EEEEECCEEchhhCccc-CC
Confidence            8999999999999999999999999999998876553111111 1   01122 23445 59999999999999843 33


Q ss_pred             CCeEEEeccCCchhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceec
Q 016848          150 DGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP  229 (381)
Q Consensus       150 ~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~  229 (381)
                      + |.++++. +...     +...   ...|+|++||+|++++|++||||+|+.+++||+|+|+.++.++   ......++
T Consensus       106 ~-v~v~~~~-a~~~-----~~~~---~~~d~f~aLN~A~~~~g~~i~v~~~~~~~~Pi~i~~~~~~~~~---~~~~~~~~  172 (424)
T PRK10948        106 P-YQVSIND-DRQG-----LPAA---IQPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLLHITQGVAG---EELNTAHY  172 (424)
T ss_pred             C-eEEEEch-hhhh-----cccc---ccccHHHHHHHhhCcCCEEEEECCCCccccCEEEEEEecCCCc---cccccccc
Confidence            4 7777755 3222     1111   1357999999999999999999999999999999998765311   00125789


Q ss_pred             eEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCC
Q 016848          230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG  309 (381)
Q Consensus       230 r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg  309 (381)
                      |++|++|+||+++|||+|.+.+ ...+|+|.++||++++||+|+|+++|.++.+++|+.+.++.++++|+|+|+.+.+||
T Consensus       173 r~lI~~e~~a~~tiie~~~s~~-~~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~G~  251 (424)
T PRK10948        173 RHHLDLAEGAEATVIEHFVSLN-EARHFTGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGA  251 (424)
T ss_pred             eEEEEECCCCEEEEEEEeecCC-CCceeEeeeEEEEECCCCEEEEEEEEccCCCcEEEEEeEEEEcCCCEEEEEEEEeCC
Confidence            9999999999999999999864 346899999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       310 ~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      +++|+++.+.|.|++|+++++|++++.++||+|+++.|.|.+|+|+|+|++|||++ |+|++||+|+|+|+|
T Consensus       252 ~~~r~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~-d~s~~vF~G~i~V~~  322 (424)
T PRK10948        252 AVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVS-DKGRAVFNGLIKVAQ  322 (424)
T ss_pred             ceEEEeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEc-CCCEEEEEEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999 999999999999975

>CHL00085 ycf24 putative ABC transporter

Probab=100.00  E-value=2e-53  Score=433.21  Aligned_cols=302  Identities=16%  Similarity=0.142  Sum_probs=256.6

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCC---CCCCCCCCCCCcc----ccccCCCCC-CCCCC------CCCCCC-------CCC
Q 016848           69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSM----IKSSQIQPI-TRPSS------SLDVST-------DAQ  127 (381)
Q Consensus        69 ~p~~l~~~R~~a~~~~~~l~~Pt---~k~E~WryT~l~~----l~~~~~~~~-~~~~~------~~~~~~-------~~~  127 (381)
                      +|.||.++|++|++.|.++|||+   +|.|+|||||++.    +........ ..+..      ...++.       ..+
T Consensus        51 ep~Wl~~~R~~A~~~~~~~~~P~~~~~~~e~w~~t~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  130 (485)
T CHL00085         51 EPIFLLIFRLKAYKKWKKMKEPDWAFLKYPEIDYQDISYYSAPKLKKKLNSLDEVDPELLDTFEKLGISLNEQKRLANVA  130 (485)
T ss_pred             CcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhceeeeccccccccCChhhCCHHHHHHHHhcCCCHHHHhhhcCCc
Confidence            79999999999999999999999   8999999999984    221110000 00100      011111       123


Q ss_pred             cceEEEECCEEcccccCCCCCCCCeEEEeccCCc---hhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEee
Q 016848          128 FPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVE  204 (381)
Q Consensus       128 ~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~  204 (381)
                      . +++|++|.+...+++.. .++||+++++.+|.   ++++++|++.... ..+++|++||.|++++|+|||||+|++++
T Consensus       131 ~-~~v~~~~~~~~~l~~~l-~~~Gv~~~~l~~a~~~~~~lv~~yl~~~~~-~~~~~f~aLn~A~~~~G~fi~Vp~gv~~~  207 (485)
T CHL00085        131 V-DAVFDSVSIGTTFKEEL-AKAGVIFCSISEAIQKYPELIKKYLGSVVP-IGDNYFAALNSAVFSDGSFCYIPKDTKCP  207 (485)
T ss_pred             e-EEEEccEEEEeeccchh-hcCCeEEEcHHHHHhhhHHHHHHHhcccCC-CCchHHHHHHHHHcCCeEEEEECCCCcce
Confidence            3 48899999998887643 38899999999887   5678999987543 34889999999999999999999999999


Q ss_pred             eeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecC---
Q 016848          205 NPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQS---  281 (381)
Q Consensus       205 ~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~---  281 (381)
                      .||++++..++.+       ..+++|++|++|+||+++|||+|.++.+...+++|+++||++++||+|+|++||+|+   
T Consensus       208 ~pl~~~~~~~~~~-------~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~  280 (485)
T CHL00085        208 LELSTYFRINNEE-------SGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKYSTVQNWYAGD  280 (485)
T ss_pred             EEEEEEEeecCCc-------cceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEEEEEEeecCcc
Confidence            9999988765422       368999999999999999999999863345789999999999999999999999996   


Q ss_pred             ----CCceEEEEEEEEE-cCCcEEEEEEEEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEE
Q 016848          282 ----LNAAHIKWTAVRQ-ETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC  356 (381)
Q Consensus       282 ----~~~~~~~~~~v~~-~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S  356 (381)
                          .+.+|+...++.+ +++|+++|..+.+||+++|+++.+.|.|+||+++++|++++.++|++|+++.|+|.+|+|+|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~~i~l~~~~Q~~D~~t~v~h~~p~t~S  360 (485)
T CHL00085        281 ENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYPSCILIGDNSQGEFYSVALTNNYQQADTGTKMIHIGKNTKS  360 (485)
T ss_pred             ccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeeceEEEecCCcEEEEEEEEEccCCEEEEeeEEEEEcCCCcEE
Confidence                5677877777766 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          357 RQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       357 ~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      ++++|||+. |+|++||+|+|+|.+
T Consensus       361 ~~~~k~Il~-d~s~~vF~G~i~V~~  384 (485)
T CHL00085        361 RIISKGISA-GKSKNSYRGLVKIGP  384 (485)
T ss_pred             EEEEEEEEC-CCCEEEEEEEEEECC
Confidence            999999999 999999999999975

>TIGR01981 sufD FeS assembly protein SufD, group 1

Probab=100.00  E-value=7.7e-49  Score=388.67  Aligned_cols=273  Identities=26%  Similarity=0.402  Sum_probs=235.0

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCCC-CCCC--CCCCCCCCCcceEEEECCEEcccccCCCCCCCCeEEEeccCCchhHH
Q 016848           89 WPSRKDEPFRFTDTSMIKSSQIQPIT-RPSS--SLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIM  165 (381)
Q Consensus        89 ~Pt~k~E~WryT~l~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~~~~~  165 (381)
                      ||++|+|+||||||+.+....+.+.. .+..  ....+..+.. ++||+||.+.+.+++...+++|+.+..+.+..    
T Consensus         1 ~P~~~~e~wkyt~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~lv~~~G~~~~~l~~~~~~~~~~~~~~l~~~~----   75 (366)
T TIGR01981         1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSP-RLVFVDGVIVPDLSDALPLHPELLEDLLDALA----   75 (366)
T ss_pred             CCCCcccCccCCCHHHhhhcccCcccCCCccccccccccCCce-eEEEECCEEecChhhhhccCcceEEeehhccc----
Confidence            69999999999999998876664211 1111  1112222344 59999999999988766677788777665421    


Q ss_pred             HHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEE
Q 016848          166 KRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIE  245 (381)
Q Consensus       166 ~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE  245 (381)
                             .. ..+++|++||.|++++|++|+||+|+++++||+++|+.++.++      ...++|++|++|+||+++|||
T Consensus        76 -------~~-~~~~~~~aln~a~~~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~------~~~~~~~~i~v~~~s~~~iie  141 (366)
T TIGR01981        76 -------VL-SDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIGVGGEK------NFVHPRLLIIVEKGSKITVIE  141 (366)
T ss_pred             -------Cc-CCccHHHHHHHHHhCCeEEEEECCCCCcCCCEEEEEEEcCCCc------cceeeEEEEEECCCCEEEEEE
Confidence                   11 2479999999999999999999999999999999998765321      357899999999999999999


Q ss_pred             EeecCCC-CcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCeeeeEEeEEEEEcCC
Q 016848          246 EFVGKEG-NDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPD  324 (381)
Q Consensus       246 ~~~~~~~-~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~~r~~~~~~L~G~~  324 (381)
                      +|.+... ...+++|.++||++++||+|+|+++|.++.+++|+..+++.++++|+|+++.+.+||+++|+++.+.|.|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~~gg~~~r~~~~~~l~G~~  221 (366)
T TIGR01981       142 RFETISLNSGKAFTNSVVEITVGANASVIFVKVQFFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEG  221 (366)
T ss_pred             EecCCCCCCcccEEEEEEEEEECCCCEEEEEEEEcCCCCcEEEEEeEEEEcCCCEEEEEEEEcCCccEEEeeeEEEEcCC
Confidence            9987531 235799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          325 TETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       325 a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      |+++++|++++.++|++|+++.|+|.+|+|+|+|++|||++ |+|+++|+|+|+|++
T Consensus       222 a~~~~~g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~-d~s~~vf~G~i~I~~  277 (366)
T TIGR01981       222 SKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILD-DRAHGVFRGIIHIPK  277 (366)
T ss_pred             cEEEEEEEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEc-CCcEEEEEEEEEECC
Confidence            99999999999999999999999999999999999999999 999999999999975

This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.

>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-43  Score=350.85  Aligned_cols=301  Identities=22%  Similarity=0.282  Sum_probs=251.4

Q ss_pred             CChHHHHHHHHHHHHhhcCCCC---CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcceEEEECCEEcccccCC
Q 016848           69 QPLPLQKLRDSSSQTLLSTPWP---SRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNL  145 (381)
Q Consensus        69 ~p~~l~~~R~~a~~~~~~l~~P---t~k~E~WryT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lvfvnG~~~~~~s~~  145 (381)
                      +|+|+.++|.++++.+..+++|   ++|.+.|+|++++.+.......  .+.....+++.+.  .++.++..........
T Consensus        11 ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~--~~~~~~~~~~~~~~~~   86 (412)
T COG0719          11 EPEWMLALRLKALRASPDLEMPEVPTRRDELWELDFLDRLYYLAPGE--ASFKRLGIPDAEE--VLAQCDSVVVYHAVSG   86 (412)
T ss_pred             CcHHHHHHHHHHHHHHhcccCCCCCcccccccCcChhHhhhccCCCc--ccccccCCCchhc--cceeecceeehhhcch
Confidence            7999999999999999999998   3667999999988777653221  1111122332221  1345554433333333


Q ss_pred             CCCCCCeEEEeccCCchhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCc
Q 016848          146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP  225 (381)
Q Consensus       146 ~~lp~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~  225 (381)
                      ...++||+++++-...+++.++|++.......+++|++||+|++++|+|||||+|++++.||+++|+..+...      .
T Consensus        87 ~~~~~gv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~aL~~a~~~~g~fiyVp~g~~~~~Pi~~~~~~~~~~~------~  160 (412)
T COG0719          87 ELAPEGVIVEDILKEHPDLVKKYFGKGVVPDDDDKFAALNAALFSDGTFIYVPKGVEVPTPIQLYFIINGENT------G  160 (412)
T ss_pred             hhhhCccEEeechhhhhHHHHHhCCCcccCCCcceeeeeeeeEEcCcEEEEeCCCceeccceEEEEEecCCCc------c
Confidence            4457899999994444788899988722224689999999999999999999999999999999988754221      3


Q ss_pred             ceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEE
Q 016848          226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEV  305 (381)
Q Consensus       226 ~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~  305 (381)
                      .++.|++|++|+||++++||+|.++ .....+++.++||++++||+|+|+.+|+|+....++..+.+..+++|+++|+.+
T Consensus       161 ~q~~~~lIiveega~v~~ie~~~~p-~~~~~~h~~vvei~v~~nA~v~~~~vqn~~~~~~~~~~~~~~~~~~a~~~~~~~  239 (412)
T COG0719         161 VQFERTLIIVEEGAEITVIEGCSAP-VGSGSLHNGVVEIFVGENASLTYTTVQNWSPVYNHLTKRAAVEEEDATVRWTQV  239 (412)
T ss_pred             ceeeeEEEEECCCCEEEEEccccCC-CCCCcceeeEEEEEEcCCCEEEEEEecccccceeeeeeeeeeeccCcEEEEEEE
Confidence            5899999999999999999999875 344566999999999999999999999999988888888899999999999999


Q ss_pred             EeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       306 ~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      .+|++++|.+..+.|.|++|.++++|++++.++|++|+.++|.|.||+|.|++++|||+. |+|+.+|+|+|+|.+
T Consensus       240 ~~G~~~t~~~~~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~-d~a~~vfrG~i~i~~  314 (412)
T COG0719         240 TLGSKVTRKYPSVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVK-DGARTVFRGLIDIRK  314 (412)
T ss_pred             ecCCceEEEeceEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEc-CCCEEEEEeEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999 999999999999964

>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.96  E-value=3.3e-27  Score=220.05  Aligned_cols=155  Identities=27%  Similarity=0.457  Sum_probs=132.4

Q ss_pred             cceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEE
Q 016848          225 PISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVE  304 (381)
Q Consensus       225 ~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~  304 (381)
                      .++++|++|++++||+++|+|.+.... ...++++.+++|++++||+|+|+.+|+++.+..++..+++.++++|+++|+.
T Consensus         3 ~~~~~~~~I~v~~~s~~~i~~~~~~~~-~~~~~~~~~~~i~v~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   81 (229)
T PF01458_consen    3 GAQFPRNLIIVEEGSEVTIIESYSSNS-GESSLHNGVIEIYVGENARLKYVSVQNWGENSIHFSNTRVILGENASLNWVS   81 (229)
T ss_dssp             EEEEEEEEEEE-TT-EEEEEEEEEETT-SSEEEEEEEEEEEE-TT-EEEEEEEEE--TCEEEEEEEEEEE-TT-EEEEEE
T ss_pred             ccEeeeEEEEECCCCEEEEEEEeCCCC-CCceEEEEEEEEEECCCcEEEEEEEecCCCcEEEEEEEEEEEcCceEEEEEE
Confidence            468999999999999999999965543 4589999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          305 VSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       305 ~~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      +.+|++++|+++++.|.|++|.++++|++++.++|++|+++.+.|.+|+|+|++++|||+. |+|+++|+|+|+|.+
T Consensus        82 ~~~g~~~~~~~~~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~-d~s~~vf~G~i~i~~  157 (229)
T PF01458_consen   82 VSLGGKMSRNRIEIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLK-DKSKVVFRGRIKIEK  157 (229)
T ss_dssp             EES--SEEEEEEEEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEES-TTSEEEEEEEEEEEC
T ss_pred             EEeCCeeEEEEEEEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEc-CCceEEEEeEEEEhh
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999975

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.

>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=98.71  E-value=2.4e-05  Score=72.94  Aligned_cols=175  Identities=16%  Similarity=0.148  Sum_probs=115.7

Q ss_pred             eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848          192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK  271 (381)
Q Consensus       192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~  271 (381)
                      -+.|.|.+|.++.  |...+......      .......+-|.+++||+++++......   ...+....+.+.++++|+
T Consensus         8 ~~~I~v~~~s~~~--i~~~~~~~~~~------~~~~~~~~~i~v~~~a~l~~~~~~~~~---~~~~~~~~~~~~~~~~a~   76 (229)
T PF01458_consen    8 RNLIIVEEGSEVT--IIESYSSNSGE------SSLHNGVIEIYVGENARLKYVSVQNWG---ENSIHFSNTRVILGENAS   76 (229)
T ss_dssp             EEEEEE-TT-EEE--EEEEEEETTSS------EEEEEEEEEEEE-TT-EEEEEEEEE-----TCEEEEEEEEEEE-TT-E
T ss_pred             eEEEEECCCCEEE--EEEEeCCCCCC------ceEEEEEEEEEECCCcEEEEEEEecCC---CcEEEEEEEEEEEcCceE
Confidence            4678999998864  21111111111      135566677999999999999754432   245677889999999999


Q ss_pred             EEEEEEEecCCCceEEEEEEEEE-cCCcEEEEEEEEeCCeeee--EEeEEEEEcCCeEEEEEEEEEecCCeEEeeee--E
Q 016848          272 VRHSYLQNQSLNAAHIKWTAVRQ-ETASGYELVEVSTGGKLSR--HNVHVQQLGPDTETELSSFHLLVSDQTQDLHS--R  346 (381)
Q Consensus       272 l~~~~vq~~~~~~~~~~~~~v~~-~~~a~~~~~~~~~Gg~~~r--~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~--~  346 (381)
                      ++++.+...+ .. ......+.+ +++|+++...+.++.+-.+  ....+.+.|+++..++..-.++.++.+.=+..  .
T Consensus        77 ~~~~~~~~g~-~~-~~~~~~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~d~s~~vf~G~i~  154 (229)
T PF01458_consen   77 LNWVSVSLGG-KM-SRNRIEIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLKDKSKVVFRGRIK  154 (229)
T ss_dssp             EEEEEEES---SE-EEEEEEEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEESTTSEEEEEEEEE
T ss_pred             EEEEEEEeCC-ee-EEEEEEEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEcCCceEEEEeEEE
Confidence            9999995544 33 333455555 9999999999998666554  55579999999999999999998876655554  7


Q ss_pred             EEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEe
Q 016848          347 LLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKV  379 (381)
Q Consensus       347 i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V  379 (381)
                      |...+++|.++|.-++++.+|+|+..-.=.+.|
T Consensus       155 i~~~a~~s~~~q~~~~llls~~A~~~s~P~LeI  187 (229)
T PF01458_consen  155 IEKGAQGSDAHQECRNLLLSDEARAYSIPELEI  187 (229)
T ss_dssp             EECTSTTEEEEEEEEEEE-STT-EEEEEEEEEE
T ss_pred             EhhhhhCChheeeEeeEEccCCeEEEEEEhHhc
Confidence            778889999999999999988888765544443

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.

>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional

Probab=98.18  E-value=0.0012  Score=67.13  Aligned_cols=171  Identities=6%  Similarity=0.034  Sum_probs=118.5

Q ss_pred             CCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCC
Q 016848          190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKG  269 (381)
Q Consensus       190 ~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~  269 (381)
                      ..-..|.+.+|.++.  |...|...++.      ....+..+-|.+++||+++.+.-...   +...++-....+.++++
T Consensus       171 ~~r~lI~~e~~a~~t--iie~~~s~~~~------~~~~n~v~ei~~~~~A~l~~~~lq~~---~~~~~~~~~~~~~~~~~  239 (424)
T PRK10948        171 HYRHHLDLAEGAEAT--VIEHFVSLNEA------RHFTGARLTMNVADNAHLNHIKLAFE---NPSSYHFAHNDLLLGRD  239 (424)
T ss_pred             cceEEEEECCCCEEE--EEEEeecCCCC------ceeEeeeEEEEECCCCEEEEEEEEcc---CCCcEEEEEeEEEEcCC
Confidence            456789999998764  33334332221      13456677899999999999865432   12344556788899999


Q ss_pred             CEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCeeeeEEeE--EEEEcCCeEEEEEEEEEecCC--eEEeeee
Q 016848          270 GKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVH--VQQLGPDTETELSSFHLLVSD--QTQDLHS  345 (381)
Q Consensus       270 A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~~r~~~~--~~L~G~~a~~~l~g~~l~~~~--q~~D~~~  345 (381)
                      |++++..+...+ ............+++|..++..+.++.+-...+++  +...|+++..+..--.+..++  -.+.=..
T Consensus       240 s~~~~~~~~~G~-~~~r~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~d~s~~vF~G~i  318 (424)
T PRK10948        240 ARAFSHSFLLGA-AVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLI  318 (424)
T ss_pred             CEEEEEEEEeCC-ceEEEeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEcCCCEEEEEEEE
Confidence            999999887644 33333333344589999999999997666555544  678889888877555555555  4445455


Q ss_pred             EEEEecCCcEEEEEEEEEEeCCCeEEE
Q 016848          346 RLLLDHPRGYCRQLHKCIVAHSLGQAV  372 (381)
Q Consensus       346 ~i~H~~p~t~S~ql~KgVl~~d~s~~V  372 (381)
                      .|...+.+|.+.|.-++++.+|+|+..
T Consensus       319 ~V~~~A~~t~a~q~~~~LLLs~~A~~~  345 (424)
T PRK10948        319 KVAQHAIKTDGQMTNNNLLLGKLAEVD  345 (424)
T ss_pred             EEecCCcCcccEEeecEEEECCCcceE
Confidence            556668999999999999997777754

>TIGR01981 sufD FeS assembly protein SufD, group 1

Probab=98.09  E-value=0.001  Score=66.39  Aligned_cols=171  Identities=15%  Similarity=0.117  Sum_probs=120.7

Q ss_pred             CCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCC
Q 016848          190 PDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKG  269 (381)
Q Consensus       190 ~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~  269 (381)
                      ..-..|.|.+|.++.  |.-.+.......    .....+..+-|.+++||+++++......   ...++-..+.+.++++
T Consensus       124 ~~~~~i~v~~~s~~~--iie~~~~~~~~~----~~~~~~~~~ei~~~~~A~l~~~~iq~~~---~~~~~~~~~~~~~~~~  194 (366)
T TIGR01981       124 HPRLLIIVEKGSKIT--VIERFETISLNS----GKAFTNSVVEITVGANASVIFVKVQFFS---KNSTHFSNHRAFIGRD  194 (366)
T ss_pred             eeEEEEEECCCCEEE--EEEEecCCCCCC----cccEEEEEEEEEECCCCEEEEEEEEcCC---CCcEEEEEeEEEEcCC
Confidence            346789999998864  222222111010    0124566778999999999998654321   2345556789999999


Q ss_pred             CEEEEEEEEecCCCceEEEEEEEE-EcCCcEEEEEEEEeCCee--eeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeee-
Q 016848          270 GKVRHSYLQNQSLNAAHIKWTAVR-QETASGYELVEVSTGGKL--SRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHS-  345 (381)
Q Consensus       270 A~l~~~~vq~~~~~~~~~~~~~v~-~~~~a~~~~~~~~~Gg~~--~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~-  345 (381)
                      |+++...+...+.-+.  ....+. .+++|+++...+.++.+-  .-....+.+.|+++..+...-.+..++.+.-+.- 
T Consensus       195 a~~~~~~~~~gg~~~r--~~~~~~l~G~~a~~~~~g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~d~s~~vf~G~  272 (366)
T TIGR01981       195 ATLRLAVVNLGGKLSR--HNFDVDLEGEGSKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGI  272 (366)
T ss_pred             CEEEEEEEEcCCccEE--EeeeEEEEcCCcEEEEEEEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEcCCcEEEEEEE
Confidence            9999999987654333  234454 479999999999886555  4455668899999999888888887776655544 


Q ss_pred             -EEEEecCCcEEEEEEEEEEeCCCeEE
Q 016848          346 -RLLLDHPRGYCRQLHKCIVAHSLGQA  371 (381)
Q Consensus       346 -~i~H~~p~t~S~ql~KgVl~~d~s~~  371 (381)
                       .|...+.+|.+.|.-++++.+++|+.
T Consensus       273 i~I~~~A~~t~a~q~~~~LlLs~~A~~  299 (366)
T TIGR01981       273 IHIPKGAKGTDAEQLNRNLLLSDDARA  299 (366)
T ss_pred             EEECCCcCcCccccEeeeEEECCCccc
Confidence             45667899999999999999566664

This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.

>TIGR01980 sufB FeS assembly protein SufB

Probab=98.05  E-value=0.0022  Score=65.73  Aligned_cols=171  Identities=10%  Similarity=0.057  Sum_probs=121.8

Q ss_pred             CeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCC
Q 016848          191 DLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGG  270 (381)
Q Consensus       191 ~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A  270 (381)
                      .-..|.+.+|.++.-   |....+....    .....+.-+-|.+++||+++++.-..-.   ...++-..+.+.++++|
T Consensus       205 ~r~lIi~ee~s~~~i---ie~~~s~~~~----~~~~~~~v~Ei~v~~~A~v~~~~iq~~~---~~~~~~~~~~~~~~~~a  274 (448)
T TIGR01980       205 EHTLIIADEGASVHY---IEGCSAPIYS----TNSLHAAVVELIVKEDARVRYSTVQNWS---KNVYNLVTKRALVEENG  274 (448)
T ss_pred             eeEEEEECCCCEEEE---EEeccccCCC----ccceEEEEEEEEEcCCCEEEEEEEeecC---CCeEEEEEEEEEEcCCC
Confidence            467888999988641   2122211010    0134556667999999999998654332   24556677889999999


Q ss_pred             EEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCeee--eEEeEEEEEcCCeEEEEEEEEEecCCeEEeeee--E
Q 016848          271 KVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLS--RHNVHVQQLGPDTETELSSFHLLVSDQTQDLHS--R  346 (381)
Q Consensus       271 ~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~~--r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~--~  346 (381)
                      ++++..+...+.-+++ .......+++|..++..+.++.+-.  -....+.+.|+++..++..-.+..++.+.=++-  .
T Consensus       275 ~~~~~~~~lG~~~s~~-~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t~v~h~~p~t~s~~~~k~v~~d~s~~vf~G~i~  353 (448)
T TIGR01980       275 TMEWVSGSIGSKITMK-YPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISKGGGKSTYRGLVK  353 (448)
T ss_pred             EEEEEEEEecCceEEE-eceEEEEcCCcEEEEEEEEecCCCEEEEcceEEEEeCCCcEEEEEEEEEECCCcEEEEEEEEE
Confidence            9999999875544442 2233446899999999998865544  455679999999999988888888776666555  4


Q ss_pred             EEEecCCcEEEEEEEEEEeCCCeEEE
Q 016848          347 LLLDHPRGYCRQLHKCIVAHSLGQAV  372 (381)
Q Consensus       347 i~H~~p~t~S~ql~KgVl~~d~s~~V  372 (381)
                      |...++.|.+.|.-++++.+|+|+..
T Consensus       354 v~~~A~~t~a~q~~~~LlLs~~a~~~  379 (448)
T TIGR01980       354 IGPGAKGAKSHVQCDSLLIDDESASD  379 (448)
T ss_pred             ECCCCCCCccEEEEeEEEECCCcceE
Confidence            66678999999999999996677653

This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.

>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0058  Score=62.00  Aligned_cols=168  Identities=14%  Similarity=0.074  Sum_probs=118.3

Q ss_pred             eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848          192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK  271 (381)
Q Consensus       192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~  271 (381)
                      -..|.|.+|.++.    ++--.+....  .+  ......+-|++++||+++++....-.   ..+.+.....+..+++|.
T Consensus       165 ~~lIiveega~v~----~ie~~~~p~~--~~--~~h~~vvei~v~~nA~v~~~~vqn~~---~~~~~~~~~~~~~~~~a~  233 (412)
T COG0719         165 RTLIIVEEGAEIT----VIEGCSAPVG--SG--SLHNGVVEIFVGENASLTYTTVQNWS---PVYNHLTKRAAVEEEDAT  233 (412)
T ss_pred             eEEEEECCCCEEE----EEccccCCCC--CC--cceeeEEEEEEcCCCEEEEEEecccc---cceeeeeeeeeeeccCcE
Confidence            4678888888542    2222211110  00  12355667999999999998654321   234455666688899999


Q ss_pred             EEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCe--eeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEE
Q 016848          272 VRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGK--LSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL  349 (381)
Q Consensus       272 l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~--~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H  349 (381)
                      ++++.+...+....+. ......+++|+.++..+.++++  ..-....+.++|+++..++..-.+..++.+.-++-.+.-
T Consensus       234 ~~~~~~~~G~~~t~~~-~~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~d~a~~vfrG~i~i  312 (412)
T COG0719         234 VRWTQVTLGSKVTRKY-PSVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVKDGARTVFRGLIDI  312 (412)
T ss_pred             EEEEEEecCCceEEEe-ceEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEcCCCEEEEEeEEEE
Confidence            9999997766544443 3444567999999999999766  445566689999999999988888887766666655555


Q ss_pred             --ecCCcEEEEEEEEEEeCCCeEE
Q 016848          350 --DHPRGYCRQLHKCIVAHSLGQA  371 (381)
Q Consensus       350 --~~p~t~S~ql~KgVl~~d~s~~  371 (381)
                        .++++.+++--+.++.+|.|++
T Consensus       313 ~~~A~~s~a~~~c~~LlLs~~a~~  336 (412)
T COG0719         313 RKGATGSDAYQECRTLLLSDDARA  336 (412)
T ss_pred             ecCCCCCchheeeceEEecCCccc
Confidence              8899999999999998566765

>CHL00085 ycf24 putative ABC transporter

Probab=97.60  E-value=0.019  Score=59.41  Aligned_cols=141  Identities=7%  Similarity=-0.087  Sum_probs=101.7

Q ss_pred             eeceEEEEeCCCCEEEEEEEeec-CCCCcceeeeeEEEEEECCCCEEEEEEEEec---CCCceEEEEEEEEEcCCcEEEE
Q 016848          227 SNPRVVVLVEEGGEVGIIEEFVG-KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYEL  302 (381)
Q Consensus       227 ~~~r~lI~veega~~~iiE~~~~-~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~v~~~~~a~~~~  302 (381)
                      ...-.+|.|.+|.++.+-..+.. ..+ .....+..+-|.+++||+++++.-...   .....|..-+.+.++++|++++
T Consensus       192 ~~~G~fi~Vp~gv~~~~pl~~~~~~~~-~~~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~  270 (485)
T CHL00085        192 FSDGSFCYIPKDTKCPLELSTYFRINN-EESGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKY  270 (485)
T ss_pred             cCCeEEEEECCCCcceEEEEEEEeecC-CccceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEE
Confidence            34467899999988776433322 221 123567899999999999999865442   3456788889999999999999


Q ss_pred             EEEEe---------CCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEE
Q 016848          303 VEVST---------GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQA  371 (381)
Q Consensus       303 ~~~~~---------Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~  371 (381)
                      +.+..         ++............|++|.++...+.++.+-...+.  .+.+.|+++.++..--.++. +..+.
T Consensus       271 ~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~--~~~L~G~~a~~~~~~i~l~~-~~Q~~  345 (485)
T CHL00085        271 STVQNWYAGDENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYP--SCILIGDNSQGEFYSVALTN-NYQQA  345 (485)
T ss_pred             EEEEeecCccccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeec--eEEEecCCcEEEEEEEEEcc-CCEEE
Confidence            99876         223322334445568999999999888888777775  47799999888887777776 54443

>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional

Probab=97.52  E-value=0.026  Score=58.44  Aligned_cols=141  Identities=8%  Similarity=-0.084  Sum_probs=101.5

Q ss_pred             eeceEEEEeCCCCEEEEEEE-eecCCCCcceeeeeEEEEEECCCCEEEEEEEEec---CCCceEEEEEEEEEcCCcEEEE
Q 016848          227 SNPRVVVLVEEGGEVGIIEE-FVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYEL  302 (381)
Q Consensus       227 ~~~r~lI~veega~~~iiE~-~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~v~~~~~a~~~~  302 (381)
                      ...-.+|.|.+|.++.+-.. +..... ........+-|.+++||+++++.-..-   ....+|..-+.+.++++|++++
T Consensus       193 ~~~G~fi~Vp~gv~~~~pi~~~~~~~~-~~~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~  271 (486)
T PRK11814        193 FSDGSFVYIPKGVRCPMELSTYFRINA-ANTGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKY  271 (486)
T ss_pred             cCCeEEEEECCCCceeEEEEEEEeecC-CCcceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEE
Confidence            44567899999999876433 322221 123567899999999999999765542   3456788889999999999999


Q ss_pred             EEEEeC-------Ceeee--EEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEE
Q 016848          303 VEVSTG-------GKLSR--HNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQA  371 (381)
Q Consensus       303 ~~~~~G-------g~~~r--~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~  371 (381)
                      +.+..=       +.-+.  ......-.|++|.++...+.++.+-...+.  .+.+.|+++.++..--.++. ++.+.
T Consensus       272 ~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~--~~~L~G~ga~~~~~gi~l~~-~~q~~  346 (486)
T PRK11814        272 STVQNWYPGDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYP--SCILRGDNSVGEFYSVALTN-GHQQA  346 (486)
T ss_pred             EEEEeecCccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeec--ceEEecCCcEEEEEeEEecc-CCEEE
Confidence            998751       22222  233444368999999998888888777774  47799999988888777776 55443

>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein

Probab=87.86  E-value=9  Score=35.08  Aligned_cols=84  Identities=13%  Similarity=0.059  Sum_probs=49.2

Q ss_pred             eceEEEEeCCCCEEEEEEEeec-C-CCCcceeeeeEEEEEECCCCEEEEEEEEe-cCCCceEEEEEEEEEcCCcEEEEEE
Q 016848          228 NPRVVVLVEEGGEVGIIEEFVG-K-EGNDCYWANSVLEVVIGKGGKVRHSYLQN-QSLNAAHIKWTAVRQETASGYELVE  304 (381)
Q Consensus       228 ~~r~lI~veega~~~iiE~~~~-~-~~~~~~~~n~v~ei~v~~~A~l~~~~vq~-~~~~~~~~~~~~v~~~~~a~~~~~~  304 (381)
                      ..++-|.+++||++.|...=.. . ...........+++.|++||.|+|.--.. .-.++.....+.+.+.++|++-+..
T Consensus        16 ~l~~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~~~A~l~~~e   95 (209)
T PF01774_consen   16 RLRIDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLAPGASLIYWE   95 (209)
T ss_dssp             EEEEEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE-TT-EEEEEE
T ss_pred             EEEEEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEECCCCEEEEEE
Confidence            4578899999999998742110 0 01112347789999999999999964332 2246778888999999999999998


Q ss_pred             EEeCCee
Q 016848          305 VSTGGKL  311 (381)
Q Consensus       305 ~~~Gg~~  311 (381)
                      +..-|+.
T Consensus        96 ~i~~GR~  102 (209)
T PF01774_consen   96 IITPGRP  102 (209)
T ss_dssp             EEE-S-G
T ss_pred             ecccCCC
Confidence            8876655

Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.

>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]

Probab=86.56  E-value=8.6  Score=36.77  Aligned_cols=117  Identities=10%  Similarity=0.019  Sum_probs=68.9

Q ss_pred             CCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeec-CCCCcceeeeeEEEEEEC
Q 016848          189 APDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVG-KEGNDCYWANSVLEVVIG  267 (381)
Q Consensus       189 ~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~-~~~~~~~~~n~v~ei~v~  267 (381)
                      ...-+.|.-|.-.. +.+.+++-++.+++--     ..-....-|.+++|+++.|.-.-.. .-....+....-++|.|+
T Consensus        28 ~~~plkV~~p~y~~-~~~~~~~li~~~GGv~-----gGD~l~~di~lg~~a~~~iTTQsatKvYrs~~g~A~Q~~~i~vg  101 (269)
T COG0829          28 QTGPLKVQRPFYPD-EGLCEAMLIHPSGGVV-----GGDRLEIDIELGDNAKALITTQSATKVYRSPGGQATQTTNITVG  101 (269)
T ss_pred             ccCCeEEEccCcCC-CCCeEEEEEeCCCCcc-----ccceEEEEEEECCCceEEEEccccceeEeCCCCceEEEEEEEEC
Confidence            33333444444222 3445555555544311     1123456799999999998732111 001123447788999999


Q ss_pred             CCCEEEEEEEEecC-CCceEEEEEEEEEcCCcEEEEEEEEeCCee
Q 016848          268 KGGKVRHSYLQNQS-LNAAHIKWTAVRQETASGYELVEVSTGGKL  311 (381)
Q Consensus       268 ~~A~l~~~~vq~~~-~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~~  311 (381)
                      +||.|+|.-=..-- +++.-..++.+.++.+|++-...+..=|+.
T Consensus       102 ~nA~LewlPq~tI~F~~a~f~q~~~~~L~~sA~l~~~E~~~~GR~  146 (269)
T COG0829         102 ENARLEWLPQETIPFEGARFKQHTRFELASSATLLYWEILALGRV  146 (269)
T ss_pred             CCCEEEecCCcceecCCceeEEEEEEEeCCCceehhhhhhhcCcc
Confidence            99999995422211 244556678899999999887776654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
2zu0_A	423	Crystal Structure Of Sufc-Sufd Complex Involved In		2e-05
1vh4_A	435	Crystal Structure Of A Stabilizer Of Iron Transport		2e-05

>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 423

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 308 GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVA 365
           GG + RHN   Q  G ++   ++S  + V ++  D  +R  L+H +G+C  RQLHK IV+
Sbjct: 249 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVS 306
Query: 366 HSLGQAVFDGNVKV 379
              G+AVF+G + V
Sbjct: 307 DK-GRAVFNGLINV 319

>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter Length = 435

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 308 GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVA 365
           GG + RHN   Q  G ++   ++S  + V ++  D  +R  L+H +G+C  RQLHK IV+
Sbjct: 251 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVS 308
Query: 366 HSLGQAVFDGNVKV 379
              G+AVF+G + V
Sbjct: 309 DK-GRAVFNGLINV 321
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
1vh4_A	435	SUFD protein; structural genomics, protein binding	1e-69
4dn7_A	429	ABC transporter, ATP-binding protein; structural g	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A* Length = 435

 Score =  224 bits (572), Expect = 1e-69
 Identities = 71/335 (21%), Positives = 132/335 (39%), Gaps = 28/335 (8%)

Query: 59  SLPSSSSSLPQ--------PLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
            LP+SS++L Q                    Q LL T  P+RK E +++T    + +SQ 
Sbjct: 5   GLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQF 64

Query: 111 QPITRPSSSLDVST---DAQFPSLVLIDGFIQNSALNLSNLPDGVYVG-SLLGVSDGIMK 166
             I    S               LV +DG    +   LS+  +G     S+     G+  
Sbjct: 65  VSIAGEISPQQRDALALTLDSVRLVFVDGRYVPA---LSDATEGSGYEVSINDDRQGLPD 121

Query: 167 RVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPI 226
            +          ++F  +    A  +  I V  G +   P+ L +++     V  +++  
Sbjct: 122 AIQA--------EVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQ---GVAGEEVNT 170

Query: 227 SNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAH 286
           ++ R  + + EG E  +IE FV    +  ++  +   + +     ++H  L  ++  + H
Sbjct: 171 AHYRHHLDLAEGAEATVIEHFVS-LNDARHFTGARFTINVAANAHLQHIKLAFENPLSHH 229

Query: 287 IKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSR 346
                +     +         GG + RHN   Q  G ++   ++S  + V ++  D  + 
Sbjct: 230 FAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTW 289

Query: 347 LLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381
           L  +      RQLHK IV+   G+AVF+G + V +
Sbjct: 290 LEHNKGFCNSRQLHKTIVSDK-GRAVFNGLINVAQ 323

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze} Length = 429

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 24/168 (14%)

Query: 195 IYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGND 254
           I VPAG K   P+    L +                 +++VEEG  + II       G  
Sbjct: 154 IRVPAGKKTSMPVQT-CLMLGSKKA------AQTVHNIIIVEEGATLDIIT------G-- 198

Query: 255 C----YWANS----VLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVR-QETASGYELVEV 305
           C             + E+ I KGG +  + + N +        T V  +E  +       
Sbjct: 199 CTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVRPRTVVSVEEGGTYVSNYIC 258

Query: 306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPR 353
               +  +    V+  G    T L++  +       DL S+ + + P 
Sbjct: 259 LKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPG 306

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 55/422 (13%), Positives = 106/422 (25%), Gaps = 162/422 (38%)

Query: 15  NRNPKLTPK--RRAKP-NKIRVSL--------------------------------QTTF 39
           N N         R +P  K+R +L                                Q   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 40  PQATF--------SDPFVIQLAESL-----EDSLPSSSSSLPQPLPLQKLRDSSSQTLLS 86
               F        S   V+++ + L      +    S  S    L +  ++    + L S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 87  TP-----------WPSRKDEPFRFTDTSMIKSSQIQPITRPSS---SLDVSTDAQFPSLV 132
            P             ++    F         S +I   TR       L  +T        
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNL-------SCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 133 LIDGFIQNSALNL---------SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWS 183
                  +   +L          +LP  V   +   +S  I + + D ++ +      W 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWD----NW- 347

Query: 184 INGMGAPDLGVIYVPAGCKVENPIYLK--Y--LSV--EGGNVDSKKLPISNPRVVVLVEE 237
              +    L  I + +   V  P   +  +  LSV     ++ +  L +           
Sbjct: 348 -KHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL----------- 394

Query: 238 GGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETA 297
                              W + +   V+     V +  L   SL          +Q   
Sbjct: 395 ------------------IWFDVIKSDVM----VVVNK-LHKYSL--------VEKQPKE 423

Query: 298 SGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDH---PRG 354
           S   +            +++++                  +    LH R ++DH   P+ 
Sbjct: 424 STISI-----------PSIYLELKVK-------------LENEYALH-RSIVDHYNIPKT 458

Query: 355 YC 356
           + 
Sbjct: 459 FD 460

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
1vh4_A	435	SUFD protein; structural genomics, protein binding	100.0
4dn7_A	429	ABC transporter, ATP-binding protein; structural g	100.0
1vh4_A	435	SUFD protein; structural genomics, protein binding	98.39
4dn7_A	429	ABC transporter, ATP-binding protein; structural g	98.34

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*

Probab=100.00  E-value=2.2e-54  Score=435.06  Aligned_cols=294  Identities=21%  Similarity=0.258  Sum_probs=256.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccccCCCCCCCCCC-----CCCCCCCCCcceEEEECCEEcccccCC
Q 016848           71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS-----SLDVSTDAQFPSLVLIDGFIQNSALNL  145 (381)
Q Consensus        71 ~~l~~~R~~a~~~~~~l~~Pt~k~E~WryT~l~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~lvfvnG~~~~~~s~~  145 (381)
                      .||.++|++||+.|.++|||++|.|+||||||+.+....+.+......     ...++ .++. ++||+||.+.+.+++ 
T Consensus        25 ~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~v~v~g~~~~~ls~-  101 (435)
T 1vh4_A           25 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALT-LDSV-RLVFVDGRYVPALSD-  101 (435)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCC-CCSE-EEEEETTEECGGGSC-
T ss_pred             chhHHHHHHHHHHHHhCCCCCCCccccccCchHHhhcccccccccccChhHHhhhcCc-cCce-EEEEECCEEeeeccc-
Confidence            368899999999999999999999999999999998876543221111     01122 2455 599999999988776 


Q ss_pred             CCCCCCeEEEeccCCchhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCc
Q 016848          146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP  225 (381)
Q Consensus       146 ~~lp~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~  225 (381)
                      +.+|+||+++++.+      ++|+++...   .|+|++||.|++++|+|||||+|+++++||+++|+.++.+.   ....
T Consensus       102 ~~~~~Gv~~~~~~~------~~~~~~~~~---~~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi~l~~~~~~~~~---~~~~  169 (435)
T 1vh4_A          102 ATEGSGYEVSINDD------RQGLPDAIQ---AEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAG---EEVN  169 (435)
T ss_dssp             CCTTSSCEEEEESC------CTTCCCCSS---CCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSS---SCEE
T ss_pred             cccCCCeEEEecch------hhhhhcccC---chHHHHHHHHhcCCcEEEEECCCCEecccEEEEEEecCCcc---cccc
Confidence            24789999999976      467765443   39999999999999999999999999999999887553220   0013


Q ss_pred             ceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEE
Q 016848          226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEV  305 (381)
Q Consensus       226 ~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~  305 (381)
                      .+++|++|++|+||+++|||+|.++. ...++++.++||++++||+|+|+.+|+|+.+++++.++++.++++|+++|+.+
T Consensus       170 ~~~~r~lIi~eegs~v~iie~~~~~~-~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~~~~~~  248 (435)
T 1vh4_A          170 TAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSF  248 (435)
T ss_dssp             EEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEE
T ss_pred             eeeeEEEEEECCCCEEEEEEEeccCC-cccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEEEECCCCEEEEEEE
Confidence            57999999999999999999999874 34789999999999999999999999999999999999999999999999999


Q ss_pred             EeCCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       306 ~~Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      .+|++++|+++.+.|.|++|+++++|++++.++|++|+++.|+|.+|+|+|++++|||+. |+|++||+|+|+|.|
T Consensus       249 ~~G~~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~-d~s~~vf~G~i~v~~  323 (435)
T 1vh4_A          249 LLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQ  323 (435)
T ss_dssp             ECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECT
T ss_pred             EECCceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEc-CCCeEEEEEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999 999999999999965

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}

Probab=100.00  E-value=8.4e-40  Score=327.00  Aligned_cols=236  Identities=19%  Similarity=0.203  Sum_probs=211.3

Q ss_pred             eEEEECCEEcccccCCCCCCCCeEEEeccCCch--hHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeE
Q 016848          130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSD--GIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPI  207 (381)
Q Consensus       130 ~lvfvnG~~~~~~s~~~~lp~GV~v~~l~~a~~--~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI  207 (381)
                      ..+++|...+...+    .|+||+++++.+|+.  +++++|+++... ..+|+|++||+|++++|+|||||+|+++++||
T Consensus        92 ~~~q~d~~~v~~~~----~~~GV~~~~l~~Al~~~~lv~~y~~~~v~-~~~d~f~Aln~A~~~~G~fI~Vp~gv~~~~Pi  166 (429)
T 4dn7_A           92 SFLVLDNAVSHSTL----KDKNVELMSTHKAMEKYEWLKDYSWKLVQ-VDADKYTAKTYLEDADGYFIRVPAGKKTSMPV  166 (429)
T ss_dssp             EEEEETTEEEEEEE----SSSSSEEEEHHHHHHHCGGGGGTTTTSSC-TTSSHHHHHHHHTTCBCEEEEECTTCBCSSCE
T ss_pred             eEEEEcCceEEEee----cCCCEEEEcHHHHhhhhHHHHHHHhccCC-CCcCHHHHHHHhhCCCcEEEEECCCcEEEEEE
Confidence            36888977766432    368999999999874  567889987654 35899999999999999999999999999999


Q ss_pred             EEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEE
Q 016848          208 YLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHI  287 (381)
Q Consensus       208 ~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~  287 (381)
                      +++|...+.+       ..+++|++|++|+||+++|||+|.++.....++++.++||++++||+|+|+.+|+|+.+.+++
T Consensus       167 ~~~~~i~~~~-------~~~~~r~lIi~eegA~v~iie~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~~~~~~~~~  239 (429)
T 4dn7_A          167 QTCLMLGSKK-------AAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVR  239 (429)
T ss_dssp             EEEEEECSSS-------EEEEEEEEEEECTTCEEEEEEEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEECCCTEEEEE
T ss_pred             EEEEEEcCCc-------cceeeeEEEEECCCCEEEEEEEecCCCCcccceEEEEEEEEECCCCEEEEEEEeecCCCcEEe
Confidence            9987765432       468999999999999999999999875445689999999999999999999999999999999


Q ss_pred             EEEEEEEcCCcEEEEEEEEeCC-eeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeC
Q 016848          288 KWTAVRQETASGYELVEVSTGG-KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAH  366 (381)
Q Consensus       288 ~~~~v~~~~~a~~~~~~~~~Gg-~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~  366 (381)
                      .++++.++++|+|.+..+.+|| +..+.++.+.|.|++|+++++|++++.++|++|+++.|.|.+|+|+|++++|||++ 
T Consensus       240 ~~~~~~~~~~a~~~~~~v~~~g~~~~~~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~-  318 (429)
T 4dn7_A          240 PRTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-  318 (429)
T ss_dssp             EEEEEEECTTCEEEEEEEECSCCSEEEECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES-
T ss_pred             cceeEEECCCcEEEEEEEEecCceEEeeeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe-
Confidence            9999999999999999999976 67777788999999999999999999999999999999999999999999999998 


Q ss_pred             CCeEEEEEeEEEe
Q 016848          367 SLGQAVFDGNVKV  379 (381)
Q Consensus       367 d~s~~VF~G~I~V  379 (381)
                       +|+.+|+|+|..
T Consensus       319 -~s~~vfrG~I~~  330 (429)
T 4dn7_A          319 -GGRLIARGEMIG  330 (429)
T ss_dssp             -SSEEEEEEEEEE
T ss_pred             -ccEEEEeeeEec
Confidence             999999999874

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*

Probab=98.39  E-value=0.0002  Score=71.71  Aligned_cols=170  Identities=6%  Similarity=0.012  Sum_probs=122.3

Q ss_pred             eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848          192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK  271 (381)
Q Consensus       192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~  271 (381)
                      -..|.+.+|.++.  +.-.+......      ....+..+-|++++||+++++....-   +...++...+.+.+++||+
T Consensus       174 r~lIi~eegs~v~--iie~~~~~~~~------~~~~~~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~~~~~~~a~  242 (435)
T 1vh4_A          174 RHHLDLAEGAEAT--VIEHFVSLNDA------RHFTGARFTINVAANAHLQHIKLAFE---NPLSHHFAHNDLLLAEDAT  242 (435)
T ss_dssp             EEEEEECTTCEEE--EEEEEEESSSS------CEEEEEEEEEEECTTCEEEEEEEECC---CTTCEEEEEEEEEECTTCE
T ss_pred             EEEEEECCCCEEE--EEEEeccCCcc------cceeeeEEEEEECCCCEEEEEEEEec---CCCeEEEEEEEEEECCCCE
Confidence            4668899998764  11112222111      12445556799999999999876542   1245666788899999999


Q ss_pred             EEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEeCCe--eeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEE
Q 016848          272 VRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGK--LSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL  349 (381)
Q Consensus       272 l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~Gg~--~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H  349 (381)
                      +++..+...+.-.++. ......+++|..++..+.++.+  ..-....+.+.|+++..++..-.+..++.+.-+.-.+.-
T Consensus       243 ~~~~~~~~G~~~~~~~-~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~d~s~~vf~G~i~v  321 (435)
T 1vh4_A          243 AFSHSFLLGGAVLRHN-TSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINV  321 (435)
T ss_dssp             EEEEEEECCCSEEEEE-EEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEE
T ss_pred             EEEEEEEECCceEEEe-eEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEcCCCeEEEEEEEEE
Confidence            9999987655333333 2333368999999999988554  455667788999999999999999988877777666666


Q ss_pred             --ecCCcEEEEEEEEEEeCCCeEEEE
Q 016848          350 --DHPRGYCRQLHKCIVAHSLGQAVF  373 (381)
Q Consensus       350 --~~p~t~S~ql~KgVl~~d~s~~VF  373 (381)
                        .+.+|.+.|.-++++.+|+|+.-=
T Consensus       322 ~~~A~~t~a~~~~~~LlLs~~a~~~t  347 (435)
T 1vh4_A          322 AQHAIKTDGQMTNNNLLMGKLAEVDT  347 (435)
T ss_dssp             CTTCTTEEEEEEEEEEECSTTCEEEE
T ss_pred             ecCCCCCeeEEEeeeEEccCCCcEEe
Confidence              789999999999999956787643

>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}

Probab=98.34  E-value=0.0003  Score=70.14  Aligned_cols=169  Identities=13%  Similarity=0.119  Sum_probs=122.4

Q ss_pred             eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848          192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK  271 (381)
Q Consensus       192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~  271 (381)
                      -..|.+.+|.++.-  ..-+.......     ....+.-+-|++++||+++++.-..-   .....+...+.+.+++||+
T Consensus       182 r~lIi~eegA~v~i--ie~c~~~~~~~-----~~lh~~v~Ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~~~~~~~a~  251 (429)
T 4dn7_A          182 HNIIIVEEGATLDI--ITGCTTKKGVE-----EGLHLGISEMYIKKGGTLNFTMIHNW---AEQIGVRPRTVVSVEEGGT  251 (429)
T ss_dssp             EEEEEECTTCEEEE--EEEEEECTTCC-----EEEEEEEEEEEECTTCEEEEEEEECC---CTEEEEEEEEEEEECTTCE
T ss_pred             eEEEEECCCCEEEE--EEEecCCCCcc-----cceEEEEEEEEECCCCEEEEEEEeec---CCCcEEecceeEEECCCcE
Confidence            35788999987641  11122211110     02334456799999999999876532   1245666888999999999


Q ss_pred             EEEEEEEecCCCceEEEEEEEE-EcCCcEEEEEEEEe--CCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEE
Q 016848          272 VRHSYLQNQSLNAAHIKWTAVR-QETASGYELVEVST--GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLL  348 (381)
Q Consensus       272 l~~~~vq~~~~~~~~~~~~~v~-~~~~a~~~~~~~~~--Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~  348 (381)
                      +....+...+.... .....+. .+++|..++..+.+  |+........+.+.|+++..++..-.++. +.+.-++-.|.
T Consensus       252 ~~~~~v~~~g~~~~-~~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~-~s~~vfrG~I~  329 (429)
T 4dn7_A          252 YVSNYICLKPVRSV-QTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-GGRLIARGEMI  329 (429)
T ss_dssp             EEEEEEECSCCSEE-EECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES-SSEEEEEEEEE
T ss_pred             EEEEEEEecCceEE-eeeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe-ccEEEEeeeEe
Confidence            98877776554433 2222344 46999888887776  56677788899999999999999999999 77777778888


Q ss_pred             EecCCcEEEEEEEEEEeCCCeEEE
Q 016848          349 LDHPRGYCRQLHKCIVAHSLGQAV  372 (381)
Q Consensus       349 H~~p~t~S~ql~KgVl~~d~s~~V  372 (381)
                      ..+.+|.+.|.-++++.+|+|+.-
T Consensus       330 ~~A~~t~~~q~~~~LLLsd~A~~~  353 (429)
T 4dn7_A          330 GNAKGAKGHLECKGLVLTDKGSQL  353 (429)
T ss_dssp             ECSTTEEEEEEEEEEECSSSCEEE
T ss_pred             cCCcCceeEEEeeeEEecCCceEE
Confidence            889999999999999985668764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1vh4a_	413	b.80.6.1 (A:) Stabilizer of iron transporter SufD	2e-15

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} Length = 413

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

 Score = 75.0 bits (183), Expect = 2e-15
 Identities = 59/289 (20%), Positives = 114/289 (39%), Gaps = 19/289 (6%)

Query: 82  QTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLD---VSTDAQFPSLVLIDGFI 138
           Q LL T  P+RK E +++T    + +SQ   I    S      ++       LV +DG  
Sbjct: 26  QQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRY 85

Query: 139 QNSALNLSNLPDGVYVG-SLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYV 197
             +   LS+  +G     S+     G+   +   +        F  +    A  +  I V
Sbjct: 86  VPA---LSDATEGSGYEVSINDDRQGLPDAIQAEV--------FLHLTESLAQSVTHIAV 134

Query: 198 PAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYW 257
             G +   P+ L +++     V  +++  ++ R  + + EG E  +IE FV    +  ++
Sbjct: 135 KRGQRPAKPLLLMHIT---QGVAGEEVNTAHYRHHLDLAEGAEATVIEHFV-SLNDARHF 190

Query: 258 ANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVH 317
             +   + +     ++H  L  ++  + H     +     +         GG + RHN  
Sbjct: 191 TGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTS 250

Query: 318 VQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAH 366
            Q  G ++   ++S  + V ++  D  + L  +      RQLHK IV+ 
Sbjct: 251 TQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSD 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1vh4a_	413	Stabilizer of iron transporter SufD {Escherichia c	100.0
d1vh4a_	413	Stabilizer of iron transporter SufD {Escherichia c	98.27

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-51  Score=412.35  Aligned_cols=294  Identities=21%  Similarity=0.249  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccccCCCCCCCCCC----CCCCCCCCCcceEEEECCEEcccccCCCC
Q 016848           72 PLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS----SLDVSTDAQFPSLVLIDGFIQNSALNLSN  147 (381)
Q Consensus        72 ~l~~~R~~a~~~~~~l~~Pt~k~E~WryT~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~~lvfvnG~~~~~~s~~~~  147 (381)
                      +..+.|+++|+.|.++|||++|+|+||||||+.|....|.+...+..    .......+.+ ++||+||.+.+.+|+.. 
T Consensus        16 ~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivfvnG~~~~~ls~~~-   93 (413)
T d1vh4a_          16 KRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSV-RLVFVDGRYVPALSDAT-   93 (413)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSE-EEEEETTEECGGGSCCC-
T ss_pred             cchHHHHHHHHHHHHcCCCCCCCcCccCCCHHHHhccCCcccCCccCchhhcccccccCce-EEEEECCEEchhcccCc-
Confidence            45567899999999999999999999999999998877654332221    0001123455 59999999999988653 


Q ss_pred             CCCCeEEEeccCCchhHHHHhhcccccccCCCHHHHHHHccCCCeEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcce
Q 016848          148 LPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPIS  227 (381)
Q Consensus       148 lp~GV~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~A~~~~G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~  227 (381)
                      .+.|+.+....+...         .......++|.+||.|++++|++|+||+|+++++||+|+|+.++...   +.....
T Consensus        94 ~~~~i~i~~~~~~~~---------~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~~~~~~~~~---~~~~~~  161 (413)
T d1vh4a_          94 EGSGYEVSINDDRQG---------LPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAG---EEVNTA  161 (413)
T ss_dssp             TTSSCEEEEESCCTT---------CCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSS---SCEEEE
T ss_pred             ccCCeEEechHhhhh---------cccchhhhhhhhhhhhccccceeEeeccceEecccceeeEeeccccc---cccccc
Confidence            467888765554321         01112579999999999999999999999999999999998764321   112468


Q ss_pred             eceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCEEEEEEEEecCCCceEEEEEEEEEcCCcEEEEEEEEe
Q 016848          228 NPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVST  307 (381)
Q Consensus       228 ~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~a~~~~~~~~~  307 (381)
                      +||++|++++||+++|+|.|.+.+ ...+|+|.++||++++||+|+|+++|.++.+++++..+++.++++|.|+++.+.+
T Consensus       162 ~~r~~I~v~ena~v~iiE~~~~~~-~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  240 (413)
T d1vh4a_         162 HYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLL  240 (413)
T ss_dssp             EEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEEC
T ss_pred             ceeeeeeecccchhhhhhhccccc-cccceecceeEEEecccceeeehhhhhhcccccccceeeeecccccceeeeeccc
Confidence            899999999999999999998864 3578999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeEEeEEEEEcCCeEEEEEEEEEecCCeEEeeeeEEEEecCCcEEEEEEEEEEeCCCeEEEEEeEEEecC
Q 016848          308 GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR  381 (381)
Q Consensus       308 Gg~~~r~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~~~i~H~~p~t~S~ql~KgVl~~d~s~~VF~G~I~V~~  381 (381)
                      |++++|.++++.|.|++|.++++|++++.++||+|+++.++|.+|+|+|+|++|||+. |+|++||+|+|+|.+
T Consensus       241 G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~-d~s~~vf~G~i~V~~  313 (413)
T d1vh4a_         241 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQ  313 (413)
T ss_dssp             CCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECT
T ss_pred             ccchhhccchhhccccccccceeeccccccchhhhhhhhhhccccccchhhhhhcccc-ccceeEEeeeecccc
Confidence            9999999999999999999999999999999999999999999999999999999999 999999999999975

>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=0.0003  Score=67.32  Aligned_cols=170  Identities=5%  Similarity=0.006  Sum_probs=121.3

Q ss_pred             eEEEEeCCCcEeeeeEEEEEEeecCCccCCCCCcceeceEEEEeCCCCEEEEEEEeecCCCCcceeeeeEEEEEECCCCE
Q 016848          192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK  271 (381)
Q Consensus       192 G~~I~Vp~g~~~~~PI~i~~~~~~~~~~~~~~~~~~~~r~lI~veega~~~iiE~~~~~~~~~~~~~n~v~ei~v~~~A~  271 (381)
                      -++|.|.+|.++.  |.-.|...+..      ....++.+-|.+++||+++.+......   ....+-..+.+.++++|.
T Consensus       164 r~~I~v~ena~v~--iiE~~~~~~~~------~~~~n~~~ei~l~~nA~l~~~~iq~~~---~~~~~~~~~~~~~~~~s~  232 (413)
T d1vh4a_         164 RHHLDLAEGAEAT--VIEHFVSLNDA------RHFTGARFTINVAANAHLQHIKLAFEN---PLSHHFAHNDLLLAEDAT  232 (413)
T ss_dssp             EEEEEECTTCEEE--EEEEEEESSSS------CEEEEEEEEEEECTTCEEEEEEEECCC---TTCEEEEEEEEEECTTCE
T ss_pred             eeeeeecccchhh--hhhhccccccc------cceecceeEEEecccceeeehhhhhhc---ccccccceeeeecccccc
Confidence            4679999999874  22223332222      134556778999999999998654332   245666889999999999


Q ss_pred             EEEEEEEecCCCceEEEEEEEE-EcCCcEEEEEEEEeCCeeee--EEeEEEEEcCCeEEEEEEEEEecCCeEEeee--eE
Q 016848          272 VRHSYLQNQSLNAAHIKWTAVR-QETASGYELVEVSTGGKLSR--HNVHVQQLGPDTETELSSFHLLVSDQTQDLH--SR  346 (381)
Q Consensus       272 l~~~~vq~~~~~~~~~~~~~v~-~~~~a~~~~~~~~~Gg~~~r--~~~~~~L~G~~a~~~l~g~~l~~~~q~~D~~--~~  346 (381)
                      ++...+...+ .... ....+. .+++|.+.+..+.++.+-..  +.+.+...|+++..++.--.+..++.+.-+.  ..
T Consensus       233 ~~~~~~~~G~-~~~r-~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~  310 (413)
T d1vh4a_         233 AFSHSFLLGG-AVLR-HNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLIN  310 (413)
T ss_dssp             EEEEEEECCC-SEEE-EEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEE
T ss_pred             eeeeeccccc-chhh-ccchhhccccccccceeeccccccchhhhhhhhhhccccccchhhhhhccccccceeEEeeeec
Confidence            9999998644 3333 334444 48999999999998766544  5566889999999888777777776555444  44


Q ss_pred             EEEecCCcEEEEEEEEEEeCCCeEEEEE
Q 016848          347 LLLDHPRGYCRQLHKCIVAHSLGQAVFD  374 (381)
Q Consensus       347 i~H~~p~t~S~ql~KgVl~~d~s~~VF~  374 (381)
                      |...+..|.+.|.-|+++.+|+|+..=.
T Consensus       311 V~~~A~~t~a~q~~~~llls~~a~~~s~  338 (413)
T d1vh4a_         311 VAQHAIKTDGQMTNNNLLMGKLAEVDTK  338 (413)
T ss_dssp             ECTTCTTEEEEEEEEEEECSTTCEEEEE
T ss_pred             ccccchhhhhHHhhhhhcccCCceEEec
Confidence            4456789999999999999668887543