Citrus Sinensis ID: 016927

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
MRSQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLAKATLKS
cccHHHHHHHHcccEEEEEccccccccHHHHHHccccccccccEEEEcHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEccccEEEEEccccccccccccccHHHHcccccccccEEEccHHHHHHHHHHHcccccccccHHHHHHccHHHHHHHHHHHcccEEEEEccHHHHHHHHccEEEEEEEcccHHHHHHHcccccEEEccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccc
cccccccEEHccccEEEEEEEcccHHHHHHHHHcccccccccEEEEccHHHHHHHHHccccccccHccccccccccHHHHHHHHHHHHccccccccccEEEEEEEccEEEEEcHHHHHcccccccccHHHHHcHHHHHHEEEcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHcccEEEEEEEccHHHHHHHHHHcccEEEccccccHHHHHEEcccccccHHcccccccccccHHHHHHHHHHHcHHHHHHcHHHHccccccccccccHHcccHHHHcccccEccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccc
MRSQGKRLKFQMNLCASIDGIvnnlsvpfnkvkaksapymaaDLVSVGDSWLSFAIKKRliepiagaedqdwFKCLSHKWKVYLrrndageidprgkiwaapyrwGTMVIAYKKskfrkhnlapiedwkdlwrpelagrismvnspREVIGSVLKYMGasynsnnidlqvaggkiSVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAipaasrletkqiggrvrgpspliHQWIEFCLQTAralpfkqevipgaspsaLETTLVKLPeellkgkpsqdtnlivgvppaeILARCefleplseatLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLAKATLKS
mrsqgkrlKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEpiagaedqdwfKCLSHKWKVYLrrndageidprgkiwaapyrwGTMVIAYKkskfrkhnlapiedwkdlwrPELAgrismvnsprEVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEEllkgkpsqdtnliVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLAKATLKS
MRSQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVqqnlallanqaRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLAKATLKS
********KFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPG*****LETTLVKL************TNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLA******
**SQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSF*A******
********KFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLAKATLKS
*****KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLAK*****
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MRSQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQSFLAKATLKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query380 2.2.26 [Sep-21-2011]
P31133370 Putrescine-binding peripl N/A no 0.513 0.527 0.283 4e-14
P44731350 Spermidine/putrescine-bin yes no 0.542 0.588 0.278 7e-13
P45168360 Spermidine/putrescine-bin no no 0.513 0.541 0.266 9e-10
P0AFL0348 Spermidine/putrescine-bin no no 0.386 0.422 0.272 3e-07
P0AFK9348 Spermidine/putrescine-bin N/A no 0.386 0.422 0.272 3e-07
P0A2C7348 Spermidine/putrescine-bin no no 0.386 0.422 0.259 5e-07
P0A2C8348 Spermidine/putrescine-bin N/A no 0.386 0.422 0.259 5e-07
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=potF PE=1 SV=3 Back     alignment and function desciption
 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 24/219 (10%)

Query: 43  DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAP 102
           DLV    S+L   +   + +P+  ++  +W        K+  +       DP  K +A P
Sbjct: 80  DLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKH------DPDNK-FAMP 132

Query: 103 YRWGTMVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLK 155
           Y W T  I Y   K +      AP++ W  + +PE   +     +S +++P EV  +VL 
Sbjct: 133 YMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLN 192

Query: 156 YMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDV 215
           Y+G   NS   D    G    +   L  L    R F S+ Y+     GD+ VA+GW+ DV
Sbjct: 193 YLGKDPNSTKAD-DYTGPATDL---LLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDV 248

Query: 216 LPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 248
             A  R        NV+  +PK GA  + D++A+PA ++
Sbjct: 249 WQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287
Required for the activity of the bacterial periplasmic transport system of putrescine. Polyamine binding protein.
Escherichia coli (strain K12) (taxid: 83333)
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-A PE=3 SV=2 Back     alignment and function description
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-B PE=3 SV=1 Back     alignment and function description
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella flexneri GN=potD PE=3 SV=1 Back     alignment and function description
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=potD PE=1 SV=1 Back     alignment and function description
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=potD PE=3 SV=1 Back     alignment and function description
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella typhi GN=potD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
224074577424 predicted protein [Populus trichocarpa] 0.986 0.884 0.709 1e-159
255557729 507 transporter, putative [Ricinus communis] 0.997 0.747 0.703 1e-159
449455671 549 PREDICTED: uncharacterized protein LOC10 0.994 0.688 0.692 1e-154
225427562 553 PREDICTED: uncharacterized protein LOC10 0.994 0.683 0.684 1e-151
147822062 875 hypothetical protein VITISV_021806 [Viti 0.994 0.432 0.652 1e-149
356559069 552 PREDICTED: uncharacterized protein LOC10 0.968 0.666 0.668 1e-148
357517389 786 RING-H2 finger protein ATL5F [Medicago t 0.971 0.469 0.658 1e-147
356560607 508 PREDICTED: uncharacterized protein LOC10 0.973 0.728 0.654 1e-145
28393765 524 unknown protein [Arabidopsis thaliana] 0.986 0.715 0.627 1e-137
30692516 524 putrescine-binding periplasmic protein-l 0.986 0.715 0.627 1e-137
>gi|224074577|ref|XP_002304393.1| predicted protein [Populus trichocarpa] gi|222841825|gb|EEE79372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/375 (70%), Positives = 313/375 (83%)

Query: 1   MRSQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRL 60
           ++SQG+RL+F++    S++ I +++S  FNK        +A+D+VSVGDSWLSFAIK  +
Sbjct: 44  IQSQGRRLRFRVKYLGSLENIFSDISASFNKRNIGPMSTVASDIVSVGDSWLSFAIKNAI 103

Query: 61  IEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120
           IEP+ G E+QDWFK LS KWKVYLRRN  GEIDP G+IWAAPYRWG+MVIAYKKSKF++H
Sbjct: 104 IEPVRGVEEQDWFKGLSDKWKVYLRRNHEGEIDPEGEIWAAPYRWGSMVIAYKKSKFQEH 163

Query: 121 NLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQN 180
            LAPIEDW DLWRPELAGRISMV+SPREV+GSVLKYMGASYN+ NIDLQV GGK +VQQN
Sbjct: 164 KLAPIEDWADLWRPELAGRISMVDSPREVVGSVLKYMGASYNTKNIDLQVPGGKNAVQQN 223

Query: 181 LALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADL 240
           LALL  Q RLFDS +YLK F +GD WVAVGWSSDVLP  KRMSNVAVVVPKSG SLWADL
Sbjct: 224 LALLGKQVRLFDSMYYLKTFSMGDAWVAVGWSSDVLPIAKRMSNVAVVVPKSGTSLWADL 283

Query: 241 WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVK 300
           WAIPAA++LET QIGGR+RGPSPLIHQWIEFCLQ ARALPFKQEVIPGA+PSA+E ++++
Sbjct: 284 WAIPAATKLETNQIGGRIRGPSPLIHQWIEFCLQAARALPFKQEVIPGATPSAIENSVIE 343

Query: 301 LPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKR 360
           +P+EL KGKP  DTNLI GVPP EIL +CEFLEPL +ATLSDY+ L+  +Q P P L+ R
Sbjct: 344 VPKELTKGKPKLDTNLIAGVPPPEILTKCEFLEPLPDATLSDYKLLIRTMQIPDPGLIHR 403

Query: 361 VQHYLSSLIQSFLAK 375
           +QHY+ S I +F  K
Sbjct: 404 IQHYILSTIHTFRLK 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557729|ref|XP_002519894.1| transporter, putative [Ricinus communis] gi|223540940|gb|EEF42498.1| transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449455671|ref|XP_004145575.1| PREDICTED: uncharacterized protein LOC101211357 [Cucumis sativus] gi|449485058|ref|XP_004157059.1| PREDICTED: uncharacterized protein LOC101230567 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225427562|ref|XP_002266662.1| PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera] gi|296085502|emb|CBI29234.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147822062|emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559069|ref|XP_003547824.1| PREDICTED: uncharacterized protein LOC100781794 [Glycine max] Back     alignment and taxonomy information
>gi|357517389|ref|XP_003628983.1| RING-H2 finger protein ATL5F [Medicago truncatula] gi|355523005|gb|AET03459.1| RING-H2 finger protein ATL5F [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560607|ref|XP_003548582.1| PREDICTED: uncharacterized protein LOC100809061 [Glycine max] Back     alignment and taxonomy information
>gi|28393765|gb|AAO42292.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30692516|ref|NP_174426.2| putrescine-binding periplasmic protein-like protein [Arabidopsis thaliana] gi|51536594|gb|AAU05535.1| At1g31410 [Arabidopsis thaliana] gi|332193231|gb|AEE31352.1| putrescine-binding periplasmic protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
TAIR|locus:2206194524 AT1G31410 [Arabidopsis thalian 0.986 0.715 0.614 3.9e-124
TIGR_CMR|BA_1300345 BA_1300 "spermidine/putrescine 0.384 0.423 0.339 1.4e-14
UNIPROTKB|P31133370 potF "putrescine ABC transport 0.513 0.527 0.278 6.9e-13
TIGR_CMR|SO_1270367 SO_1270 "polyamine ABC transpo 0.605 0.626 0.268 4e-10
TIGR_CMR|CPS_0103369 CPS_0103 "putrescine ABC trans 0.384 0.395 0.315 9e-10
TIGR_CMR|CPS_4671361 CPS_4671 "putrescine ABC trans 0.384 0.404 0.307 5.4e-09
UNIPROTKB|Q9KKJ4343 VCA1113 "Spermidine/putrescine 0.384 0.425 0.25 3.5e-08
TIGR_CMR|VC_A1113343 VC_A1113 "spermidine/putrescin 0.384 0.425 0.25 3.5e-08
TIGR_CMR|SPO_3469361 SPO_3469 "putrescine ABC trans 0.452 0.476 0.280 5.6e-08
UNIPROTKB|Q9KS37345 VC1424 "Spermidine/putrescine 0.523 0.576 0.244 9e-07
TAIR|locus:2206194 AT1G31410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 233/379 (61%), Positives = 289/379 (76%)

Query:     1 MRSQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRL 60
             M SQGKR++ +     +++ I  +LS P    K  +A   AAD++S+GDSWLSFAIK++L
Sbjct:   137 MSSQGKRVRLKTQFRGNLEEIFFDLSKPSKNGKKGAASTAAADMISIGDSWLSFAIKEKL 196

Query:    61 IEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120
             IEP+ G EDQDW+K LS KWK+YLRRN AGE  P G+ WA PYRWGTMVIAYKKSKF+ +
Sbjct:   197 IEPMKGIEDQDWYKGLSDKWKIYLRRNYAGEKAPDGETWAVPYRWGTMVIAYKKSKFQNY 256

Query:   121 NLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXX 180
              LAPIEDW DLWRPELAGRI+MVNSPREV+G+VLKYM ASYN+ ++D QV GG+++V   
Sbjct:   257 KLAPIEDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKN 316

Query:   181 XXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADL 240
                     RLFDS +YLKAF +GDVWV VGWSSDV+P  KRMSNV V+VPKSGA+LWADL
Sbjct:   317 LASLMKQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIVPKSGATLWADL 376

Query:   241 WAIPAASRL--ETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTL 298
             WAIPA S    E +Q GGRVRGPSPLI+QWIEFCLQ AR+LPF +EVIPGASPSAL+  L
Sbjct:   377 WAIPAVSDSGKEAEQRGGRVRGPSPLINQWIEFCLQPARSLPFTREVIPGASPSALDGPL 436

Query:   299 VKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPA--PV 356
             V  PE+  K +   DTNL+ GVPP EIL++CEFLEPL EATLS+Y  L+  ++K +  P 
Sbjct:   437 VTEPEKTKKDRTKLDTNLVTGVPPPEILSKCEFLEPLPEATLSEYRLLIETVRKQSQRPG 496

Query:   357 LMKRVQHYLSSLIQSFLAK 375
             L+++++  +S  ++ F AK
Sbjct:   497 LVEKLKDIVSIKVRGFRAK 515
GO:0005215 "transporter activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
TIGR_CMR|BA_1300 BA_1300 "spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P31133 potF "putrescine ABC transporter - periplasmic binding protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1270 SO_1270 "polyamine ABC transporter, periplasmic polyamine-binding protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0103 CPS_0103 "putrescine ABC transporter, periplasmic putrescine-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4671 CPS_4671 "putrescine ABC transporter, periplasmic putrescine-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KKJ4 VCA1113 "Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A1113 VC_A1113 "spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3469 SPO_3469 "putrescine ABC transporter, periplasmic putrescine-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KS37 VC1424 "Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
COG0687363 COG0687, PotD, Spermidine/putrescine-binding perip 4e-35
pfam13343239 pfam13343, SBP_bac_6, Bacterial extracellular solu 2e-23
PRK10682370 PRK10682, PRK10682, putrescine transporter subunit 2e-15
pfam13416281 pfam13416, SBP_bac_8, Bacterial extracellular solu 6e-15
PRK09501348 PRK09501, potD, spermidine/putrescine ABC transpor 2e-08
>gnl|CDD|223759 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information 
 Score =  132 bits (333), Expect = 4e-35
 Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 55/327 (16%)

Query: 29  FNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRND 88
             K+KA    Y   D+V     +++  IK+ L++P+      D  K L + WK       
Sbjct: 71  LAKLKAGGGGY---DVVVPSGYFVARLIKEGLLQPL------DKSK-LPN-WKNLDPEFL 119

Query: 89  AGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPE-----LAGRISMV 143
                  G  ++ PY WGT  IAY   K +  +  P   W DL+ PE         ++++
Sbjct: 120 NPPKFDPGNKYSVPYFWGTTGIAYNTDKVK--DAPPPTSWADLFDPEKFPGLKGKGVALL 177

Query: 144 NSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLA----NQARLFDSTHYLKA 199
           +  REV G+ L  +G S N+ + +         +++   LL          FD + Y++ 
Sbjct: 178 DDDREVFGAALALLGKSPNTTDPED--------LKKAFDLLDKLKPVNVYWFDGSQYVQL 229

Query: 200 FGIGDVWVAVGWSSDVLPA--VKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGR 257
              G+V +A+GWS D   A   K  + +  V+PK G+ LW D  AIP  ++         
Sbjct: 230 LANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNV------- 282

Query: 258 VRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLI 317
                   +++I F L    A    + V  G +P        KL  + +K  P+      
Sbjct: 283 -----DAAYKFINFLLDPEVAAKLAEFV--GYAPPNKAAR--KLLPKEIKDDPAIY---- 329

Query: 318 VGVPPAEILARCEFLEPLSEATLSDYE 344
              P AEIL +    + L    L  Y 
Sbjct: 330 ---PTAEILKKLFGQKDLGPEALRLYT 353

Length = 363
>gnl|CDD|222057 pfam13343, SBP_bac_6, Bacterial extracellular solute-binding protein Back     alignment and domain information
>gnl|CDD|182645 PRK10682, PRK10682, putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>gnl|CDD|222114 pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein Back     alignment and domain information
>gnl|CDD|181913 PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 380
COG0687363 PotD Spermidine/putrescine-binding periplasmic pro 100.0
PRK09501348 potD spermidine/putrescine ABC transporter peripla 100.0
PRK10682370 putrescine transporter subunit: periplasmic-bindin 100.0
PRK11622401 hypothetical protein; Provisional 99.96
TIGR03227367 PhnS 2-aminoethylphosphonate ABC transporter, peri 99.95
TIGR03261334 phnS2 putative 2-aminoethylphosphonate ABC transpo 99.95
PF13343242 SBP_bac_6: Bacterial extracellular solute-binding 99.94
TIGR01276309 thiB thiamine ABC transporter, periplasmic binding 99.94
TIGR01254304 sfuA ABC transporter periplasmic binding protein, 99.93
PF13416281 SBP_bac_8: Bacterial extracellular solute-binding 99.93
PRK11205330 tbpA thiamine transporter substrate binding subuni 99.92
PRK15046349 2-aminoethylphosphonate ABC transporter substrate- 99.89
COG4143336 TbpA ABC-type thiamine transport system, periplasm 99.81
TIGR03850437 bind_CPR_0540 carbohydrate ABC transporter substra 99.79
COG1840299 AfuA ABC-type Fe3+ transport system, periplasmic c 99.79
PRK09474396 malE maltose ABC transporter periplasmic protein; 99.75
TIGR03851450 chitin_NgcE carbohydrate ABC transporter, N-acetyl 99.73
PRK10974438 glycerol-3-phosphate transporter periplasmic bindi 99.71
COG1653433 UgpB ABC-type sugar transport system, periplasmic 99.64
COG2182420 MalE Maltose-binding periplasmic proteins/domains 99.63
COG4134384 ABC-type uncharacterized transport system, peripla 99.61
PF01547315 SBP_bac_1: Bacterial extracellular solute-binding 99.6
TIGR00971315 3a0106s03 sulfate/thiosulfate-binding protein. Thi 99.56
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 99.55
PRK10852338 thiosulfate transporter subunit; Provisional 99.53
PRK10752329 sulfate transporter subunit; Provisional 99.5
PF13531230 SBP_bac_11: Bacterial extracellular solute-binding 99.27
PRK10677257 modA molybdate transporter periplasmic protein; Pr 99.06
PF02030493 Lipoprotein_8: Hypothetical lipoprotein (MG045 fam 99.04
COG1613348 Sbp ABC-type sulfate transport system, periplasmic 98.93
PRK03537188 molybdate ABC transporter periplasmic molybdate-bi 98.57
PRK04168334 molybdate ABC transporter periplasmic substrate-bi 98.54
COG0725258 ModA ABC-type molybdate transport system, periplas 98.28
COG4150341 CysP ABC-type sulfate transport system, periplasmi 97.95
TIGR03730273 tungstate_WtpA tungstate ABC transporter binding p 97.41
COG4588252 AcfC Accessory colonization factor AcfC, contains 92.18
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-43  Score=345.25  Aligned_cols=283  Identities=28%  Similarity=0.462  Sum_probs=242.7

Q ss_pred             hhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeeccccee
Q 016927           29 FNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTM  108 (380)
Q Consensus        29 ~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~  108 (380)
                      ++|+++|+.   .||||+++..++.+++++|+|+|||.+    +++|++++++.++..   ..+|+ |+.|+|||.||++
T Consensus        71 ~ak~~~g~~---~~Dvv~~s~~~~~~~~~~gll~~lD~s----kl~n~~~l~~~~~~~---~~~d~-g~~y~vPy~~g~t  139 (363)
T COG0687          71 LAKLKAGGG---GYDVVVPSGYFVARLIKEGLLQPLDKS----KLPNWKNLDPEFLNP---PKFDP-GNKYSVPYFWGTT  139 (363)
T ss_pred             HHHHHcCCC---CceEEEeCHHHHHHHHHcCCcccCChh----hCcCccccCHHHhcc---ccCCC-CCEeeeeEEeeee
Confidence            356788876   399999999999999999999999976    588888888877753   12565 7889999999999


Q ss_pred             EEEEeccccccCCCCCCCCHHHhcCcc----ccCc-eeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHH
Q 016927          109 VIAYKKSKFRKHNLAPIEDWKDLWRPE----LAGR-ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLAL  183 (380)
Q Consensus       109 gi~Yn~d~~~~~g~~~p~sW~dL~~~~----~~gk-i~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~  183 (380)
                      +|+||+++++.  ..+|+||++||+++    ++|+ +.+.+++++.+..++.++|.++|..+++.     ++++++.|.+
T Consensus       140 ~i~Yn~~~~~~--~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~-----~~~a~~~L~~  212 (363)
T COG0687         140 GIAYNTDKVKD--APPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPED-----LKKAFDLLDK  212 (363)
T ss_pred             EEEEeccccCC--CCCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHcCCCCCCCCHHH-----HHHHHHHHHH
Confidence            99999999981  13789999999987    7887 88999999999999999999987777652     6799999999


Q ss_pred             Hhh-hcccccchhHHHHhHcCCEEEEEechhcHHHHH--HcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCC
Q 016927          184 LAN-QARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV--KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRG  260 (380)
Q Consensus       184 l~~-~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~--~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~  260 (380)
                      +++ ++..++++++.+.|++|+++|+++|+|++..++  +.+.++++++|+||+.+|+|+|+|||+++|++         
T Consensus       213 ~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~---------  283 (363)
T COG0687         213 LKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVD---------  283 (363)
T ss_pred             hCcccEEEecchHHHHHHhcCCEEEEEEeChHHHHHHHhhcCCceEEEcCCCCceeeeEeeeeeCCCCCHH---------
Confidence            999 666677889999999999999999999999885  57778999999999999999999999999998         


Q ss_pred             ChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHHhhcccccCCCHHHH
Q 016927          261 PSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATL  340 (380)
Q Consensus       261 ~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~  340 (380)
                         +|++||||+++||+|+.+++. .+|++|+  ..+...+++++..++        .++|+.+.+.+......+.++..
T Consensus       284 ---~A~~fInf~~~pe~~a~~~~~-~~y~~~n--~~a~~~~~~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~  349 (363)
T COG0687         284 ---AAYKFINFLLDPEVAAKLAEF-VGYAPPN--KAARKLLPKEIKDDP--------AIYPTAEILKKLFGQKDLGPEAL  349 (363)
T ss_pred             ---HHHHHHHHhhCHHHHHHHHHh-ccCCCCC--HHHHHhCcHhhhcCc--------ccCCCHHHhhcccchhhccHHHH
Confidence               999999999999999999976 6777776  455556777666543        35888888888888888877778


Q ss_pred             HHHHHHHHHhcC
Q 016927          341 SDYEWLVADLQK  352 (380)
Q Consensus       341 ~~~~~~w~~~~~  352 (380)
                      +.|++.|+++++
T Consensus       350 ~~~~~~~~~~~~  361 (363)
T COG0687         350 RLYTKAWQEIKA  361 (363)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>PRK11622 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein Back     alignment and domain information
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein Back     alignment and domain information
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A Back     alignment and domain information
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein Back     alignment and domain information
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily Back     alignment and domain information
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A Back     alignment and domain information
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional Back     alignment and domain information
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional Back     alignment and domain information
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism] Back     alignment and domain information
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family Back     alignment and domain information
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein Back     alignment and domain information
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional Back     alignment and domain information
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>PRK10852 thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PRK10752 sulfate transporter subunit; Provisional Back     alignment and domain information
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A Back     alignment and domain information
>PRK10677 modA molybdate transporter periplasmic protein; Provisional Back     alignment and domain information
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family) Back     alignment and domain information
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional Back     alignment and domain information
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional Back     alignment and domain information
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA Back     alignment and domain information
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
1a99_A344 Putrescine Receptor (Potf) From E. Coli Length = 34 2e-14
4gl0_A333 Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM 1e-13
3ttl_A340 Crystal Structure Of Apo-Spue Length = 340 4e-13
3ttn_A340 Crystal Structures Of Polyamine Receptors Spud And 8e-13
3ttk_A345 Crystal Structure Of Apo-Spud Length = 345 1e-11
3ttm_A346 Crystal Structure Of Spud In Complex With Putrescin 2e-11
4eqb_A330 1.5 Angstrom Crystal Structure Of SpermidinePUTRESC 1e-08
2v84_A343 Crystal Structure Of The Tp0655 (Tppotd) Lipoprotei 5e-08
1poy_1323 SpermidinePUTRESCINE-Binding Protein Complexed With 2e-07
1pot_A325 Spermidine/putrescine-binding Protein Complexed Wit 2e-07
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli Length = 344 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 43  DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAP 102
           DLV    S+L   +   + +P+  ++  +W        K+  +       DP  K +A P
Sbjct: 54  DLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKH------DPDNK-FAMP 106
Query: 103 YRWGTMVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLK 155
           Y W T  I Y   K +      AP++ W  + +PE   +     +S +++P EV  +VL 
Sbjct: 107 YMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLN 166
Query: 156 YMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDV 215
           Y+G   NS   D                     R F S+ Y+     GD+ VA+GW+ DV
Sbjct: 167 YLGKDPNSTKADDYTG----PATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDV 222
Query: 216 LPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 248
             A  R        NV+  +PK GA  + D++A+PA ++
Sbjct: 223 WQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 261
>pdb|4GL0|A Chain A, Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM LISTERIA Monocytogenes Length = 333 Back     alignment and structure
>pdb|3TTL|A Chain A, Crystal Structure Of Apo-Spue Length = 340 Back     alignment and structure
>pdb|3TTN|A Chain A, Crystal Structures Of Polyamine Receptors Spud And Spue From Pseudomonas Aeruginosa Length = 340 Back     alignment and structure
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud Length = 345 Back     alignment and structure
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine Length = 346 Back     alignment and structure
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC Transporter Substrate-Binding Protein From Streptococcus Pneumoniae Strain Canada Mdr_19a In Complex With Calcium And Hepes. Length = 330 Back     alignment and structure
>pdb|2V84|A Chain A, Crystal Structure Of The Tp0655 (Tppotd) Lipoprotein Of Treponema Pallidum Length = 343 Back     alignment and structure
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With Spermidine (Dimer Form) Length = 323 Back     alignment and structure
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With Spermidine (monomer Form) Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 2e-49
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 1e-48
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 2e-44
3ttn_A340 Polyamine transport protein; polyamine binding pro 5e-44
3ttm_A346 Polyamine transport protein; polyamine binding, pu 2e-43
1a99_A344 POTF, putrescine-binding protein; transport, perip 2e-43
4edp_A351 ABC transporter, substrate-binding protein; clostr 1e-37
3pu5_A333 Extracellular solute-binding protein; structural g 3e-30
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 3e-29
3thi_A371 Protein (thiaminase I); thiamin degradation, trans 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
3c9h_A355 ABC transporter, substrate binding protein; struct 4e-06
2w7y_A430 FCSSBP, probable sugar ABC transporter, sugar-bind 7e-05
2z8f_A412 Galacto-N-biose/lacto-N-biose I transporter subst 2e-04
1sbp_A310 Sulfate-binding protein; 1.70A {Salmonella typhimu 5e-04
3i3v_A405 Probable secreted solute-binding lipoprotein; tran 7e-04
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Length = 330 Back     alignment and structure
 Score =  168 bits (428), Expect = 2e-49
 Identities = 66/320 (20%), Positives = 112/320 (35%), Gaps = 56/320 (17%)

Query: 31  KVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAG 90
           K+K     Y   D+    +  ++    + L+ P+    D    + + +    +L +    
Sbjct: 50  KIKQGGTTY---DIAIPSEYMINKMKDEDLLVPL----DYSKIEGIENIGPEFLNQ---- 98

Query: 91  EIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVI 150
             DP  K ++ PY WGT+ I Y ++   +      E W DLW+ E    I + +  REV+
Sbjct: 99  SFDPGNK-FSIPYFWGTLGIVYNETMVDE----APEHWDDLWKLEYKNSIMLFDGAREVL 153

Query: 151 GSVLKYMGASYNSNNI-DLQVAGGKISVQQNLALLANQA---RLFDSTHYLKAFGIGDVW 206
           G  L  +G S NS +   L+              L       +   +          +V 
Sbjct: 154 GLGLNSLGYSLNSKDPQQLEETV---------DKLYKLTPNIKAIVADEMKGYMIQNNVA 204

Query: 207 VAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA-ASRLETKQIGGRVRGPSPLI 265
           + V +S +    +++  N+  VVP   ++LW D   IP      +               
Sbjct: 205 IGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQD-------------SA 251

Query: 266 HQWIEFCLQTARALPFKQEV-IPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAE 324
           + +I F L+   AL   + V     +  A E     LPEE  + K           P  E
Sbjct: 252 YAFINFMLKPENALQNAEYVGYSTPNLPAKE----LLPEETKEDKAF--------YPDVE 299

Query: 325 ILARCEFLEPLSEATLSDYE 344
            +   E  E         Y 
Sbjct: 300 TMKHLEVYEKFDHKWTGKYS 319
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Length = 325 Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Length = 343 Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Length = 340 Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Length = 346 Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Length = 344 Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Length = 351 Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Length = 333 Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Length = 365 Back     alignment and structure
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A Length = 371 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Length = 355 Back     alignment and structure
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} Length = 430 Back     alignment and structure
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* Length = 412 Back     alignment and structure
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Length = 310 Back     alignment and structure
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor} Length = 405 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
4gl0_A333 LMO0810 protein; structural genomics, IDP05673, sp 100.0
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 100.0
3ttm_A346 Polyamine transport protein; polyamine binding, pu 100.0
3ttn_A340 Polyamine transport protein; polyamine binding pro 100.0
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 100.0
1a99_A344 POTF, putrescine-binding protein; transport, perip 100.0
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 100.0
4i1d_A324 ABC transporter substrate-binding protein; structu 100.0
4euo_A320 ABC transporter, substrate binding protein (polya; 99.98
3pu5_A333 Extracellular solute-binding protein; structural g 99.97
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 99.97
4edp_A351 ABC transporter, substrate-binding protein; clostr 99.95
2qry_A330 Thiamine-binding periplasmic protein; thiamin bind 99.93
3quf_A414 Extracellular solute-binding protein, family 1; st 99.91
3k01_A412 Acarbose/maltose binding protein GACH; ABC transpo 99.91
3uor_A458 ABC transporter sugar binding protein; ALFA/beta p 99.91
1xvx_A312 YFUA; periplasmic iron binding protein, iron bindi 99.91
3c9h_A355 ABC transporter, substrate binding protein; struct 99.91
3e13_X322 Putative iron-uptake ABC transport system, peripla 99.9
1elj_A381 Maltodextrin-binding protein; protein-carbohydrate 99.9
2pt1_A334 Iron transport protein; C-clamp, iron-binding prot 99.9
1nnf_A309 Iron-utilization periplasmic protein; iron-binding 99.9
1q35_A320 Iron binding protein FBPA; metal binding protein; 99.89
2voz_A346 FUTA2, periplasmic iron-binding protein; ferric bi 99.88
2gha_A382 Maltose ABC transporter, periplasmic maltose-BIND 99.88
4dxb_A 637 RG13, maltose-binding periplasmic protein, beta-la 99.88
2zyo_A397 Solute-binding protein; open form, sugar binding p 99.88
3ob4_A 500 Conglutin, maltose ABC transporter periplasmic pro 99.88
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 99.88
1y9u_A323 Putative iron binding protein; periplasmic binding 99.87
3n94_A475 Fusion protein of maltose-binding periplasmic Pro 99.87
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 99.87
2b3f_A400 Glucose-binding protein; protein-carbohydrate comp 99.87
1eu8_A409 Trehalose/maltose binding protein; protein-carbohy 99.87
4hs7_A420 Bacterial extracellular solute-binding protein, P; 99.87
4hw8_A420 Bacterial extracellular solute-binding protein, P; 99.86
2gh9_A386 Maltose/maltodextrin-binding protein; MBP, maltose 99.86
2xz3_A463 Maltose ABC transporter periplasmic protein, ENVE 99.86
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 99.86
2vgq_A477 Maltose-binding periplasmic protein, mitochondrial 99.86
2heu_A401 Sugar ABC transporter, sugar-binding protein; peri 99.86
3oai_A 507 Maltose-binding periplasmic protein, myelin prote; 99.86
1urs_A402 Maltose-binding protein; maltodextrin-binding prot 99.86
3py7_A 523 Maltose-binding periplasmic protein,paxillin LD1, 99.86
1y4c_A 494 Maltose binding protein fused with designed helica 99.85
3oo8_A415 ABC transporter binding protein ACBH; class 2 SBP 99.85
2xd3_A416 MALX, maltose/maltodextrin-binding protein; solute 99.85
1hsj_A487 Fusion protein consisting of staphylococcus access 99.85
3h3g_A 539 Fusion protein of maltose-binding periplasmic DOM 99.85
3osr_A 653 Maltose-binding periplasmic protein, green fluore 99.84
3csg_A461 MBP, maltose-binding protein monobody YS1 fusion, 99.84
3o3u_N 581 Maltose-binding periplasmic protein, advanced Gly 99.84
3f5f_A 658 Maltose-binding periplasmic protein, heparan sulfa 99.84
3mp6_A 522 MBP, SGF29, maltose-binding periplasmic protein, l 99.84
2zxt_A465 Maltose-binding periplasmic protein, linker, MITO 99.84
3h4z_A 568 Maltose-binding periplasmic protein fused with Al 99.84
4aq4_A419 SN-glycerol-3-phosphate-binding periplasmic prote; 99.84
1r6z_P 509 Chimera of maltose-binding periplasmic protein AN 99.84
4exk_A487 Maltose-binding periplasmic protein, uncharacteri 99.83
4h1g_A 715 Maltose binding protein-cakar3 motor domain fusio; 99.83
3thi_A371 Protein (thiaminase I); thiamin degradation, trans 99.83
4b3n_A 602 Maltose-binding periplasmic protein, tripartite mo 99.83
2z8f_A412 Galacto-N-biose/lacto-N-biose I transporter subst 99.83
2uvj_A408 TOGB, ABC type periplasmic sugar-binding protein; 99.82
4g68_A456 ABC transporter; transport protein; HET: XYS; 1.80 99.82
3i3v_A405 Probable secreted solute-binding lipoprotein; tran 99.81
3osq_A661 Maltose-binding periplasmic protein, green fluore 99.81
3dm0_A 694 Maltose-binding periplasmic protein fused with RAC 99.79
2nvu_B 805 Maltose binding protein/NEDD8-activating enzyme E1 99.77
2w7y_A430 FCSSBP, probable sugar ABC transporter, sugar-bind 99.77
4gqo_A433 LMO0859 protein; virulence, pathogenesis, vaccine 99.76
1sbp_A310 Sulfate-binding protein; 1.70A {Salmonella typhimu 99.73
3a09_A490 ALGQ1; sugar binding protein, alginate; HET: MAW B 99.69
3omb_A535 Extracellular solute-binding protein, family 1; PS 99.67
3vlv_A502 ALGQ1; sugar binding protein, alginate; HET: MAW L 99.67
3cg1_A296 UPF0100 protein PF0080; ABC transporter, binding p 99.61
3cfx_A296 UPF0100 protein MA_0280; ABC transporter, binding 99.49
3cij_A295 UPF0100 protein AF_0094; archaeal periplasmic bind 99.47
3r26_A237 Molybdate-binding periplasmic protein; protein bin 99.4
3cfz_A292 UPF0100 protein MJ1186; ABC transporter, binding p 99.32
2hxw_A237 Major antigenic peptide PEB3; periplasmic binding 99.3
3gzg_A253 Molybdate-binding periplasmic protein; permease; m 99.22
1atg_A231 MODA, periplasmic molybdate-binding protein; tungs 99.22
3k6v_A354 Solute-binding protein MA_0280; MODA, molybdate, p 98.53
3muq_A237 Uncharacterized conserved protein; structural geno 92.66
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 87.7
3lr1_A236 Tungstate ABC transporter, periplasmic tungstate- 83.49
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes} Back     alignment and structure
Probab=100.00  E-value=2.5e-45  Score=354.63  Aligned_cols=296  Identities=22%  Similarity=0.346  Sum_probs=252.2

Q ss_pred             ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927            7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR   86 (380)
Q Consensus         7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~   86 (380)
                      +|+|+.+..++.++++       +||++|+.   .+|||++++.++.+++++|+|+|||.+    .++|+.++.+.+.. 
T Consensus        35 GIkV~~~~~~s~e~~~-------~kl~ag~~---~~DVv~~~~~~~~~~~~~gll~~ld~~----~~~n~~~~~~~~~~-   99 (333)
T 4gl0_A           35 GIKVIYQTFDSNEAMM-------TKIEQGGT---TFDIAVPSDYAISKMKEENLLIPLDHS----KLPNEKYLDPRFMD-   99 (333)
T ss_dssp             CCEEEEEEESCHHHHH-------HHHHTCSS---CCSEECCBHHHHHHHHHTTCBCCCCGG----GCGGGGGBCGGGSS-
T ss_pred             CCEEEEEeCCCHHHHH-------HHHHcCCC---CCeEEEeCHHHHHHHHHcCCccccccc----cccccccCCHHHhh-
Confidence            3555555555555444       45777765   699999999999999999999999976    45666555444332 


Q ss_pred             hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927           87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI  166 (380)
Q Consensus        87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~  166 (380)
                         ..+++ |+.|++||.+++++|+||++++++   .+|+||++|++|+++|++.+.+.+.+.++.++.++|.+.+..++
T Consensus       100 ---~~~~~-~~~y~vp~~~~~~~i~yn~~~~~~---~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~  172 (333)
T 4gl0_A          100 ---LSFDD-DNKYSMPYFWGTLGIIYNKEMFPD---KNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNK  172 (333)
T ss_dssp             ---CGGGG-GGSSEEEEEEEEEEEEEETTTCTT---CCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCH
T ss_pred             ---hccCC-CCceEeceeeeeeeeeechhhccc---CCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCH
Confidence               34554 667999999999999999999986   37899999999999999999999999999999999998887766


Q ss_pred             hhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC
Q 016927          167 DLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA  246 (380)
Q Consensus       167 ~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~  246 (380)
                      +.     +.++.+.+..+++++..+++++..+.|++|+++|+++|++++..++..+.++.+++|++|+.+|+++++|+|+
T Consensus       173 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~  247 (333)
T 4gl0_A          173 AH-----LQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKT  247 (333)
T ss_dssp             HH-----HHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTT
T ss_pred             HH-----HHHHHHHHHhhccccceecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcC
Confidence            51     5677888889999988888888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHH
Q 016927          247 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEIL  326 (380)
Q Consensus       247 s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~  326 (380)
                      ++|++            +|++||||++|||+|+.+++. .+|++|+  ..+...+|+++++++        .++|+.+.+
T Consensus       248 a~n~e------------~A~~fi~fllspe~q~~~~~~-~gy~~~n--~~a~~~l~~~~~~~~--------~~~p~~~~~  304 (333)
T 4gl0_A          248 AKNVD------------GAHKFINFMLKPENAAINAEY-VGYATPN--AKAVELLPKEISSDE--------RFYPDMDEL  304 (333)
T ss_dssp             CSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCBCCB--HHHHHHSCHHHHTCT--------TTSCCGGGG
T ss_pred             CCCHH------------HHHHHHHHhcCHHHHHHHHHH-hCCCCcc--HHHHHhCCHHHHhCc--------ccCCCHHHH
Confidence            99998            999999999999999999976 6777776  567778999998864        368999999


Q ss_pred             hhcccccCCCHHHHHHHHHHHHHhcC
Q 016927          327 ARCEFLEPLSEATLSDYEWLVADLQK  352 (380)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~w~~~~~  352 (380)
                      ++++++.+++++..++|+++|+++|.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~w~~~K~  330 (333)
T 4gl0_A          305 NNLEVYDNLGKRMLSYYNELFLEFKM  330 (333)
T ss_dssp             TTEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhCeehhcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999983
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Back     alignment and structure
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Back     alignment and structure
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum} Back     alignment and structure
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Back     alignment and structure
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Back     alignment and structure
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp} Back     alignment and structure
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A* Back     alignment and structure
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV} Back     alignment and structure
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Back     alignment and structure
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A Back     alignment and structure
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1 Back     alignment and structure
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A Back     alignment and structure
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A Back     alignment and structure
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A Back     alignment and structure
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* Back     alignment and structure
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A* Back     alignment and structure
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A Back     alignment and structure
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* Back     alignment and structure
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A Back     alignment and structure
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A* Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A* Back     alignment and structure
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1 Back     alignment and structure
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp} Back     alignment and structure
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A* Back     alignment and structure
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus} Back     alignment and structure
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A* Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli} Back     alignment and structure
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A Back     alignment and structure
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli} Back     alignment and structure
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A* Back     alignment and structure
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli} Back     alignment and structure
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli} Back     alignment and structure
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A Back     alignment and structure
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A* Back     alignment and structure
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Back     alignment and structure
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* Back     alignment and structure
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli} Back     alignment and structure
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* Back     alignment and structure
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A Back     alignment and structure
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} Back     alignment and structure
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A* Back     alignment and structure
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Back     alignment and structure
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} Back     alignment and structure
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli} Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ... Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* Back     alignment and structure
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A Back     alignment and structure
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B* Back     alignment and structure
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor} Back     alignment and structure
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} Back     alignment and structure
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes} Back     alignment and structure
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Back     alignment and structure
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A Back     alignment and structure
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Back     alignment and structure
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A Back     alignment and structure
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A Back     alignment and structure
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans} Back     alignment and structure
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A Back     alignment and structure
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A Back     alignment and structure
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Back     alignment and structure
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Back     alignment and structure
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Back     alignment and structure
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A Back     alignment and structure
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 380
d1a99a_341 c.94.1.1 (A:) Putrescine receptor (PotF) {Escheric 6e-19
d1pota_322 c.94.1.1 (A:) Spermidine/putrescine-binding protei 2e-17
d3thia_362 c.94.1.1 (A:) Thiaminase I {Paenibacillus thiamino 1e-04
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Length = 341 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Putrescine receptor (PotF)
species: Escherichia coli [TaxId: 562]

 Score = 84.8 bits (208), Expect = 6e-19
 Identities = 69/329 (20%), Positives = 122/329 (37%), Gaps = 50/329 (15%)

Query: 29  FNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRND 88
             K+ A S  +   DLV    S+L   +   + +P+  ++  +W        K+      
Sbjct: 41  EGKLMAGSTGF---DLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLV----- 92

Query: 89  AGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNL--APIEDWKDLWRPELAGRI-----S 141
                     +A PY W T  I Y   K +      AP++ W  + +PE   ++     S
Sbjct: 93  --AKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVS 150

Query: 142 MVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFG 201
            +++P EV  +VL Y+G   NS   D         + +         R F S+ Y+    
Sbjct: 151 FLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKL----RPNIRYFHSSQYINDLA 206

Query: 202 IGDVWVAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASRLETKQIG 255
            GD+ VA+GW+ DV  A  R        NV+  +PK GA  + D++A+PA ++       
Sbjct: 207 NGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK------- 259

Query: 256 GRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTN 315
                     +Q++ + L+          V      +A +     +  E+ +        
Sbjct: 260 -----NKDEAYQFLNYLLRPDVVAHISDHV---FYANANKAATPLVSAEVRENP------ 305

Query: 316 LIVGVPPAEILARCEFLEPLSEATLSDYE 344
                PPA++ A+   L+           
Sbjct: 306 --GIYPPADVRAKLFTLKVQDPKIDRVRT 332
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} Length = 362 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
d1pota_322 Spermidine/putrescine-binding protein PotD {Escher 100.0
d1a99a_341 Putrescine receptor (PotF) {Escherichia coli [TaxI 99.98
d1xvxa_311 Ferric-binding protein FbpA {Yersinia enterocoliti 99.87
d1q35a_318 Ferric-binding protein FbpA {Mannheimia haemolytic 99.86
d1elja_380 D-maltodextrin-binding protein, MBP {Archaeon Pyro 99.85
d3thia_362 Thiaminase I {Paenibacillus thiaminolyticus [TaxId 99.81
d1nnfa_308 Ferric-binding protein FbpA {Haemophilus influenza 99.81
d1ursa_367 D-maltodextrin-binding protein, MBP {Alicyclobacil 99.81
d1eu8a_407 D-maltodextrin-binding protein, MBP {Archaeon Ther 99.79
d1y4ta_317 Ferric-binding protein FbpA {Campylobacter jejuni 99.77
d1laxa_369 D-maltodextrin-binding protein, MBP {Escherichia c 99.77
d1y9ua_318 Ferric-binding protein FbpA {Bordetella pertussis 99.67
d1j1na_492 Alginate-binding periplasmic protein AlgQ2 {Sphing 99.56
d1sbpa_309 Sulphate-binding protein {Salmonella typhimurium [ 99.39
d1atga_231 Molybdate-binding protein, ModA {Azotobacter vinel 99.25
d1amfa_231 Molybdate-binding protein, ModA {Escherichia coli 99.1
d2onsa1311 Molybdate-binding protein, ModA {Archaeoglobus ful 98.82
d1twya_249 ABC transporter, periplasmic substrate-binding pro 93.81
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 81.19
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-37  Score=295.06  Aligned_cols=296  Identities=23%  Similarity=0.332  Sum_probs=242.4

Q ss_pred             ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927            7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR   86 (380)
Q Consensus         7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~   86 (380)
                      +|+|+++..++.+.++++       |++++.+  .+||+.+++.++.++++.|+++|||..    ..++.+.+.+.+.+ 
T Consensus        26 gI~V~~~~~~~~~~~~~~-------l~a~~~~--~~Dvv~~~~~~~~~~~~~g~~~~ld~~----~~~~~~~~~~~~~~-   91 (322)
T d1pota_          26 GIKVIYSTYESNETMYAK-------LKTYKDG--AYDLVVPSTYYVDKMRKEGMIQKIDKS----KLTNFSNLDPDMLN-   91 (322)
T ss_dssp             CEEEEEEEESCHHHHHHH-------HTTCSSS--CSSBBCCBGGGHHHHHHHTCBCCCCTT----SCTTGGGBCGGGSC-
T ss_pred             CCEEEEEeCCCHHHHHHH-------HHhcCCC--CCeEEEeChHHHHHHHhCCcccccchh----hcchhhccChhhhc-
Confidence            467767666666555544       6676543  689999999999999999999999865    24555554443332 


Q ss_pred             hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927           87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI  166 (380)
Q Consensus        87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~  166 (380)
                         ..++ +|+.|++|+..++.+++||++++++   .+|+||+|||+++++|++.+.+.+...++.+..+.+.+......
T Consensus        92 ---~~~~-~g~~~~~P~~~~~~~l~Yn~~~~~~---~~p~sw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (322)
T d1pota_          92 ---KPFD-PNNDYSIPYIWGATAIGVNGDAVDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDP  164 (322)
T ss_dssp             ---CTTS-TTCSSCEEEEEEEEEEEEETTTSCT---TTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCH
T ss_pred             ---cccC-CCCceEeeeeeeeeeeEehhhhcCc---cccCcHHHHhChHhhhcccccCchhhhhHHHHHHhccCccccch
Confidence               2233 3778999999999999999999986   47999999999999999999988777777776676665444333


Q ss_pred             hhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC
Q 016927          167 DLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA  246 (380)
Q Consensus       167 ~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~  246 (380)
                      .     ......+.+..+.+++..|.+++..+.+.+|++.|++.|++.+..+.+.+.++++.+|++|+.+|+++++|+|+
T Consensus       165 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~I~k~  239 (322)
T d1pota_         165 K-----EIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPAN  239 (322)
T ss_dssp             H-----HHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTT
T ss_pred             h-----hHHHHHHHHHHhccccceeeccccccccccCcEEEEEEechhHHHHHhhccccceeeccCCceeeeeeeEEecC
Confidence            2     14566778888888888887778889999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHH
Q 016927          247 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEIL  326 (380)
Q Consensus       247 s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~  326 (380)
                      ++|++            +|++||+||+|||+|+.+++. .++.+|+  ..+...+++++++++        .++|+.+.+
T Consensus       240 a~n~~------------~A~~fi~fl~s~e~q~~~~~~-~g~~p~~--~~a~~~~~~e~~~~~--------~~~~~~~~~  296 (322)
T d1pota_         240 AKNKE------------GALKLINFLLRPDVAKQVAET-IGYPTPN--LAARKLLSPEVANDK--------TLYPDAETI  296 (322)
T ss_dssp             CTTHH------------HHHHHHHHHHSHHHHHHHHHH-HCCCCSB--STTTTTSCHHHHTCT--------TTSCCHHHH
T ss_pred             CCCHH------------HHHHHHHHHcCHHHHHHHHHH-hCCCCcC--HHHHhhCCHHHHhCc--------ccCCCHHHH
Confidence            99998            999999999999999999986 5666665  567778999998753        358889999


Q ss_pred             hhcccccCCCHHHHHHHHHHHHHhcC
Q 016927          327 ARCEFLEPLSEATLSDYEWLVADLQK  352 (380)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~w~~~~~  352 (380)
                      .++.++.++++ ..+.|+++|+++|+
T Consensus       297 ~~~~~~~~~~~-~~~~~~~~~~~~~a  321 (322)
T d1pota_         297 KNGEWQNDVGA-ASSIYEEYYQKLKA  321 (322)
T ss_dssp             HHSEECCCCGG-GHHHHHHHHHHHTT
T ss_pred             hhCchhhcCHH-HHHHHHHHHHHHhC
Confidence            99999988865 57899999999985
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]} Back     information, alignment and structure
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]} Back     information, alignment and structure
>d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} Back     information, alignment and structure
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]} Back     information, alignment and structure
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]} Back     information, alignment and structure
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure