Citrus Sinensis ID: 017203

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
ccccccccccHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEccccEEEEEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHccccccccccccEEEEccccHHHHHHHHHcccccEEEEEcccccHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHcccccccccccccccccccccccccc
ccccccccccHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccEEcccHEEEEEEEcccccEEEEEEEccccEEEEEEEEcccccEEEcccccccccccEEEEEcccccccccEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccHcHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHccccEEEEEEcccccHHHHHHccHHHccccHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccc
MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVienpncewdefpslpsAAYSLLRSkfkpltstlhsvvdssddVTTKLLVKLQNGGFVEAVIMRYDsslgkyngkprpggprstlcissqvgckmgcnfcatgtmgfksnlssgEIVEQLVHASRLSNIRNVVfmgmgeplnNYAALVEAVRImtglpfqvspkritvSTVGIVHAINKFhsdlpglnlavslhapvqdvrcqimpaaraFPLEKLMNALKEYQKNSQQKIFIEYIMldgvndeeQHAHQLGKLLETFQVVVNLipfnpigsvsqfrtssddkvsSFQKILRGSYNIRTTVRKQMgqdisgacgqlvvnlpdkisakstppvtdiedlcir
mtydyrsvfdGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLhsvvdssddvTTKLLVklqnggfveAVIMRYDSSLGkyngkprpggprstLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNlpdkisakstppvtdiedlcir
MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
***DYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKY***********TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF*********SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP********************
***DYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHS*****DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ*********************DLC**
MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ***********FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
*****RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
A0LQM1342 Dual-specificity RNA meth yes no 0.696 0.763 0.449 3e-60
Q1DCU1359 Dual-specificity RNA meth yes no 0.845 0.883 0.367 3e-59
A9A3L9351 Ribosomal RNA large subun yes no 0.856 0.914 0.371 7e-59
Q6MDD0358 Probable dual-specificity yes no 0.877 0.918 0.353 7e-58
Q0VND7381 Dual-specificity RNA meth yes no 0.709 0.698 0.435 3e-56
A1WXZ3359 Dual-specificity RNA meth yes no 0.885 0.924 0.392 8e-56
B2A0B9374 Probable dual-specificity yes no 0.821 0.823 0.377 4e-55
Q7UHU7371 Probable dual-specificity yes no 0.845 0.854 0.364 5e-55
Q1MQJ3358 Dual-specificity RNA meth yes no 0.810 0.849 0.400 9e-55
A1A1I4386 Probable dual-specificity yes no 0.786 0.764 0.383 1e-54
>sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1 Back     alignment and function desciption
 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/289 (44%), Positives = 183/289 (63%), Gaps = 28/289 (9%)

Query: 73  DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
           + +DD T+K L  L++G  +EAV++              P  PRSTLC+SSQVGC +GC 
Sbjct: 72  EQADDGTSKYLFGLRDGHSIEAVLI--------------PDLPRSTLCVSSQVGCALGCK 117

Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVVFMGMGEPLNNYAALVEAVRIM 188
           FC TG++GFK NLS+ EIV+Q+    R     S I N+VFMGMGEPL N  +++ A+R++
Sbjct: 118 FCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIVFMGMGEPLANLDSVLRAIRVI 177

Query: 189 T---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
               G+ F  S +RIT+ST G+V  + +   + P +NLAVSLHA   ++R ++MP  R +
Sbjct: 178 AEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLAVSLHAAENELRAELMPVNRTY 234

Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-I 304
           PLE LM A +EY    +++I  EYI+LDG+ND+ + A QL KLL   +  VNL+PFNP  
Sbjct: 235 PLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQLVKLLHGIRAKVNLMPFNPHP 294

Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
           GSV  FR  S+ +V +FQ+ L+ +  I T VR+  G +I  ACGQLV  
Sbjct: 295 GSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEIGAACGQLVAE 340
Specifically methylates position 2 of adenine 2503 in 23S rRNA.
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 2
>sp|Q1DCU1|RLMN1_MYXXD Dual-specificity RNA methyltransferase RlmN 1 OS=Myxococcus xanthus (strain DK 1622) GN=rlmN1 PE=3 SV=1 Back     alignment and function description
>sp|A9A3L9|RLMN_NITMS Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2 OS=Protochlamydia amoebophila (strain UWE25) GN=rlmN2 PE=3 SV=2 Back     alignment and function description
>sp|Q0VND7|RLMN_ALCBS Dual-specificity RNA methyltransferase RlmN OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A1WXZ3|RLMN_HALHL Dual-specificity RNA methyltransferase RlmN OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|B2A0B9|RLMN3_OPITP Probable dual-specificity RNA methyltransferase RlmN 3 OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=rlmN3 PE=3 SV=1 Back     alignment and function description
>sp|Q7UHU7|RLMN_RHOBA Probable dual-specificity RNA methyltransferase RlmN OS=Rhodopirellula baltica (strain SH1) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|Q1MQJ3|RLMN_LAWIP Dual-specificity RNA methyltransferase RlmN OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A1A1I4|RLMN_BIFAA Probable dual-specificity RNA methyltransferase RlmN OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rlmN PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
224060769373 predicted protein [Populus trichocarpa] 0.973 0.978 0.836 0.0
225428987372 PREDICTED: ribosomal RNA large subunit m 0.976 0.983 0.808 1e-177
449438321384 PREDICTED: dual-specificity RNA methyltr 0.981 0.958 0.786 1e-177
357113533382 PREDICTED: ribosomal RNA large subunit m 0.978 0.960 0.752 1e-165
226498566381 uncharacterized protein LOC100277741 [Ze 0.984 0.968 0.748 1e-164
414865368381 TPA: hypothetical protein ZEAMMB73_09002 0.984 0.968 0.748 1e-164
242036573381 hypothetical protein SORBIDRAFT_01g04367 0.978 0.963 0.747 1e-164
115451403388 Os03g0202300 [Oryza sativa Japonica Grou 0.978 0.945 0.744 1e-163
218192280388 hypothetical protein OsI_10424 [Oryza sa 0.978 0.945 0.744 1e-163
357480659380 Ribosomal RNA large subunit methyltransf 0.981 0.968 0.743 1e-163
>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa] gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/372 (83%), Positives = 334/372 (89%), Gaps = 7/372 (1%)

Query: 7   SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
           S+FDG  +RAEFEKAGI  HFIP IWKYVI+NPNCEWD+ P LPSAAYSLLRSKFK  TS
Sbjct: 5   SIFDGPDVRAEFEKAGINTHFIPFIWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTS 64

Query: 67  TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
           ++ SV++S+D VTTKLLVKLQNG FVEAVIMRYD+ LGKY GKPRPGGPRSTLCISSQVG
Sbjct: 65  SVDSVINSNDGVTTKLLVKLQNGAFVEAVIMRYDTRLGKYCGKPRPGGPRSTLCISSQVG 124

Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
           CKMGC FCATG+MGFK+NLSSGEIVEQLVHAS LS IRNVVFMGMGEPLNNY+ALVEAVR
Sbjct: 125 CKMGCKFCATGSMGFKNNLSSGEIVEQLVHASCLSQIRNVVFMGMGEPLNNYSALVEAVR 184

Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
            M+G+PFQ+SPKRITVSTVGI+HAINK H DLPGLNLAVSLHAPVQDVRCQIMPAARAFP
Sbjct: 185 AMSGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 244

Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
           LEKLM+AL+ YQKNS QKIFIEYIMLDGVNDEEQHAHQLGKLLETF VVVNLIPFNPIGS
Sbjct: 245 LEKLMDALQVYQKNSMQKIFIEYIMLDGVNDEEQHAHQLGKLLETFDVVVNLIPFNPIGS 304

Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP- 365
           +SQFRTSS++KV  FQKILRG  NIRTTVRKQMGQDISGACGQLVVNLPD    +  PP 
Sbjct: 305 LSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQDISGACGQLVVNLPD----EKKPPN 360

Query: 366 --VTDIEDLCIR 375
             VTDIEDL  R
Sbjct: 361 LGVTDIEDLVSR 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428987|ref|XP_002265287.1| PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis vinifera] gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera] gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438321|ref|XP_004136937.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like [Cucumis sativus] gi|449495695|ref|XP_004159917.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357113533|ref|XP_003558557.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 2-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|226498566|ref|NP_001144705.1| uncharacterized protein LOC100277741 [Zea mays] gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays] Back     alignment and taxonomy information
>gi|414865368|tpg|DAA43925.1| TPA: hypothetical protein ZEAMMB73_090029 [Zea mays] Back     alignment and taxonomy information
>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group] gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa Japonica Group] gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357480659|ref|XP_003610615.1| Ribosomal RNA large subunit methyltransferase N [Medicago truncatula] gi|355511950|gb|AES93573.1| Ribosomal RNA large subunit methyltransferase N [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2091161372 AT3G19630 [Arabidopsis thalian 0.984 0.991 0.758 4.2e-150
DICTYBASE|DDB_G0288255407 DDB_G0288255 "putative ribosom 0.898 0.828 0.366 2.1e-52
UNIPROTKB|Q603C0366 rlmN "Dual-specificity RNA met 0.773 0.792 0.382 1.8e-48
TIGR_CMR|CJE_1882356 CJE_1882 "radical SAM enzyme, 0.853 0.898 0.353 1.1e-46
UNIPROTKB|Q3AC22342 rlmN "Probable dual-specificit 0.802 0.880 0.347 3e-46
TIGR_CMR|CHY_1480342 CHY_1480 "radical SAM enzyme, 0.802 0.880 0.347 3e-46
TAIR|locus:2043225431 AT2G39670 [Arabidopsis thalian 0.786 0.684 0.378 3.8e-46
UNIPROTKB|P36979384 rlmN "23S rRNA m2A2503 methylt 0.648 0.632 0.420 6.2e-46
UNIPROTKB|Q723G9367 rlmN "Probable dual-specificit 0.834 0.852 0.342 3.4e-45
UNIPROTKB|Q74E53360 rlmN "Dual-specificity RNA met 0.762 0.794 0.393 7.1e-45
TAIR|locus:2091161 AT3G19630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1465 (520.8 bits), Expect = 4.2e-150, P = 4.2e-150
 Identities = 280/369 (75%), Positives = 318/369 (86%)

Query:     6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
             +SVFD   I++EFE AGI   F   IWKYVI+NP+C WDE PSLPSAAYSLL SKFK LT
Sbjct:     4 KSVFDASEIKSEFESAGINPKFAIQIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLT 63

Query:    66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
             S+LHS+  SSD  T+KLL+KLQNG FVEAV+MRYD+ LG   GKPRPGG RSTLCISSQV
Sbjct:    64 SSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQV 123

Query:   126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAV 185
             GCKMGC FCATGTMGFKSNL+SGEIVEQLVHASR+++IRN+VFMGMGEPLNNY A+VEAV
Sbjct:   124 GCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIADIRNIVFMGMGEPLNNYNAVVEAV 183

Query:   186 RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
             R+M   PFQ+SPKRIT+STVGIVHAINK H+DLPG++LAVSLHAPVQ++RCQIMPAARAF
Sbjct:   184 RVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAF 243

Query:   246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
             PL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIG
Sbjct:   244 PLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIG 303

Query:   306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
             S SQF TSS   VS FQKILR +Y IRTT+RK+MGQDISGACGQLVVN PD      T  
Sbjct:   304 STSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVE 363

Query:   366 VTDIEDLCI 374
             + DIEDL +
Sbjct:   364 LRDIEDLLL 372
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0008173 "RNA methyltransferase activity" evidence=IEA
GO:0051536 "iron-sulfur cluster binding" evidence=IEA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
DICTYBASE|DDB_G0288255 DDB_G0288255 "putative ribosomal RNA large subunit methyltransferase N" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q603C0 rlmN "Dual-specificity RNA methyltransferase RlmN" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1882 CJE_1882 "radical SAM enzyme, Cfr family" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AC22 rlmN "Probable dual-specificity RNA methyltransferase RlmN" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1480 CHY_1480 "radical SAM enzyme, Cfr family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TAIR|locus:2043225 AT2G39670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P36979 rlmN "23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q723G9 rlmN "Probable dual-specificity RNA methyltransferase RlmN" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q74E53 rlmN "Dual-specificity RNA methyltransferase RlmN" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2SDW1RLMN_HAHCH2, ., 1, ., 1, ., 1, 9, 20.36900.85060.8439yesno
A8F8C2RLMN_THELT2, ., 1, ., 1, ., 1, 9, 20.35100.85060.9300yesno
Q9X240RLMN_THEMA2, ., 1, ., 1, ., 1, 9, 20.35200.8480.9271yesno
B1YG36RLMN_EXIS22, ., 1, ., 1, ., 1, 9, 20.36140.80530.8459yesno
Q727F1RLMN_DESVH2, ., 1, ., 1, ., 1, 9, 20.38550.81060.8351yesno
Q833B6RLMN_ENTFA2, ., 1, ., 1, ., 1, 9, 20.34780.840.8823yesno
B2A0B9RLMN3_OPITP2, ., 1, ., 1, ., 1, 9, 20.37790.82130.8235yesno
A6TRW3RLMN_ALKMQ2, ., 1, ., 1, ., 1, 9, 20.35670.8240.8778yesno
Q8RFZ9RLMN_FUSNN2, ., 1, ., 1, ., 1, 9, 20.36600.85060.8910yesno
C1DD41RLMN_LARHH2, ., 1, ., 1, ., 1, 9, 20.36630.87460.8961yesno
B9L721RLMN_NAUPA2, ., 1, ., 1, ., 1, 9, 20.36440.86930.9209yesno
Q6MDD0RLMN2_PARUW2, ., 1, ., 1, ., 1, 9, 20.35320.87730.9189yesno
B8DRU2RLMN_DESVM2, ., 1, ., 1, ., 1, 9, 20.37950.81060.8283yesno
B2UNF2RLMN_AKKM82, ., 1, ., 1, ., 1, 9, 20.34500.86930.9080yesno
Q72HC1RLMN_THET22, ., 1, ., 1, ., 1, 9, 20.36170.8160.8619yesno
A1W574RLMN_ACISJ2, ., 1, ., 1, ., 1, 9, 20.36850.87460.8770yesno
A7HNQ1RLMN_FERNB2, ., 1, ., 1, ., 1, 9, 20.34360.87730.9454yesno
Q8ELW7RLMN_OCEIH2, ., 1, ., 1, ., 1, 9, 20.33920.83460.8816yesno
A1VAL8RLMN_DESVV2, ., 1, ., 1, ., 1, 9, 20.38550.81060.8351yesno
A1WXZ3RLMN_HALHL2, ., 1, ., 1, ., 1, 9, 20.39210.88530.9247yesno
A1WE19RLMN_VEREI2, ., 1, ., 1, ., 1, 9, 20.38710.8560.8209yesno
Q47BR3RLMN_DECAR2, ., 1, ., 1, ., 1, 9, 20.37840.87460.9010yesno
A9A3L9RLMN_NITMS2, ., 1, ., 1, ., 1, 9, 20.37180.8560.9145yesno
B9K7Z6RLMN_THENN2, ., 1, ., 1, ., 1, 9, 20.36670.86660.9475yesno
A1AL40RLMN_PELPD2, ., 1, ., 1, ., 1, 9, 20.36440.8080.8731yesno
Q7UHU7RLMN_RHOBA2, ., 1, ., 1, ., 1, 9, 20.36440.84530.8544yesno
A2SHB8RLMN_METPP2, ., 1, ., 1, ., 1, 9, 20.37530.89060.8477yesno
A5ILF6RLMN_THEP12, ., 1, ., 1, ., 1, 9, 20.35390.84530.9241yesno
A4IM49RLMN_GEOTN2, ., 1, ., 1, ., 1, 9, 20.34250.80530.8296yesno
B1LAW7RLMN_THESQ2, ., 1, ., 1, ., 1, 9, 20.35390.84530.9241yesno
Q5SGZ3RLMN_THET82, ., 1, ., 1, ., 1, 9, 20.36170.8160.8619yesno
Q1DCU1RLMN1_MYXXD2, ., 1, ., 1, ., 1, 9, 20.36760.84530.8830yesno
Q1MQJ3RLMN_LAWIP2, ., 1, ., 1, ., 1, 9, 20.40060.81060.8491yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I1064
hypothetical protein (373 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00002342
methionyl-trna formyltransferase (EC-2.1.2.9) (356 aa)
•     • 0.467
estExt_Genewise1_v1.C_1290095
ribulose-phosphate 3-epimerase (EC-5.1.3.1) (286 aa)
•       0.424
estExt_fgenesh4_pg.C_LG_I2289
SubName- Full=Putative uncharacterized protein; (226 aa)
•       0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
COG0820349 COG0820, COG0820, Predicted Fe-S-cluster redox enz 1e-106
TIGR00048355 TIGR00048, TIGR00048, 23S rRNA m2A2503 methyltrans 6e-89
PRK14460354 PRK14460, PRK14460, ribosomal RNA large subunit me 2e-86
PRK14469343 PRK14469, PRK14469, ribosomal RNA large subunit me 1e-83
PRK14459373 PRK14459, PRK14459, ribosomal RNA large subunit me 1e-82
PRK14454342 PRK14454, PRK14454, ribosomal RNA large subunit me 2e-82
PRK14468343 PRK14468, PRK14468, ribosomal RNA large subunit me 4e-82
PRK14455356 PRK14455, PRK14455, ribosomal RNA large subunit me 6e-81
PRK14457345 PRK14457, PRK14457, ribosomal RNA large subunit me 4e-79
PRK14463349 PRK14463, PRK14463, ribosomal RNA large subunit me 5e-78
PRK14462356 PRK14462, PRK14462, ribosomal RNA large subunit me 2e-76
PRK14467348 PRK14467, PRK14467, ribosomal RNA large subunit me 5e-76
PRK14453347 PRK14453, PRK14453, chloramphenicol/florfenicol re 1e-74
PRK14461371 PRK14461, PRK14461, ribosomal RNA large subunit me 2e-73
PRK11194372 PRK11194, PRK11194, ribosomal RNA large subunit me 2e-71
PRK14466345 PRK14466, PRK14466, ribosomal RNA large subunit me 2e-71
PRK14456368 PRK14456, PRK14456, ribosomal RNA large subunit me 1e-66
PRK14465342 PRK14465, PRK14465, ribosomal RNA large subunit me 1e-57
PRK14470336 PRK14470, PRK14470, ribosomal RNA large subunit me 7e-51
PRK14464344 PRK14464, PRK14464, ribosomal RNA large subunit me 5e-48
pfam04055165 pfam04055, Radical_SAM, Radical SAM superfamily 3e-12
cd01335204 cd01335, Radical_SAM, Radical SAM superfamily 2e-05
TIGR03906 467 TIGR03906, quino_hemo_SAM, quinohemoprotein amine 0.002
>gnl|CDD|223890 COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information 
 Score =  314 bits (807), Expect = e-106
 Identities = 129/330 (39%), Positives = 187/330 (56%), Gaps = 23/330 (6%)

Query: 31  IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
           ++K++ +    ++DE   L     + L+  F      +  V +SSD     L   L +G 
Sbjct: 29  LFKWIYQKGVDDFDEMTDLSKGLRAKLKEAFFINLLKVVEVQESSDGTIKWLFEVLPDGT 88

Query: 91  FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
            +E V++                  R+TLC+SSQVGC +GC FCATG  G   NLS+GEI
Sbjct: 89  MIETVLIPEKD--------------RNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEI 134

Query: 151 VEQLVHASRL------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVS 203
           VEQ++ A++         I NVVFMGMGEPL N   +V+A+ I+       +S +RITVS
Sbjct: 135 VEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVS 194

Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
           T GIV  I K   +  G+ LA+SLHAP  ++R Q+MP  + +P+E+L+ A++ Y + S +
Sbjct: 195 TSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR 254

Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
           ++  EY++LDGVND  +HA +L KLL+     VNLIP+NP+   S +  SS +++  F K
Sbjct: 255 RVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPV-PGSDYERSSKERIRKFLK 313

Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
           IL     +  TVRK  G DI  ACGQL   
Sbjct: 314 IL-KKAGVLVTVRKTRGDDIDAACGQLRGK 342

Length = 349
>gnl|CDD|232798 TIGR00048, TIGR00048, 23S rRNA m2A2503 methyltransferase Back     alignment and domain information
>gnl|CDD|172935 PRK14460, PRK14460, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172944 PRK14469, PRK14469, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184689 PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184686 PRK14454, PRK14454, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184694 PRK14468, PRK14468, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237717 PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184688 PRK14457, PRK14457, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237720 PRK14463, PRK14463, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237719 PRK14462, PRK14462, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184693 PRK14467, PRK14467, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>gnl|CDD|237718 PRK14461, PRK14461, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|183031 PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237721 PRK14466, PRK14466, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172932 PRK14456, PRK14456, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172940 PRK14465, PRK14465, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172945 PRK14470, PRK14470, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184691 PRK14464, PRK14464, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|234391 TIGR03906, quino_hemo_SAM, quinohemoprotein amine dehydrogenase maturation protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
PRK14461371 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14459373 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14465342 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14466345 ribosomal RNA large subunit methyltransferase N; P 100.0
COG0820349 Predicted Fe-S-cluster redox enzyme [General funct 100.0
PRK14462356 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14467348 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14457345 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK11194372 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14454342 ribosomal RNA large subunit methyltransferase N; P 100.0
TIGR00048355 radical SAM enzyme, Cfr family. A Staphylococcus s 100.0
PRK14470336 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14453347 chloramphenicol/florfenicol resistance protein; Pr 100.0
PRK14460354 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14455356 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14464344 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14456368 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14463349 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14468343 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14469343 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK11145246 pflA pyruvate formate lyase-activating enzyme 1; P 99.98
COG1180260 PflA Pyruvate-formate lyase-activating enzyme [Pos 99.95
TIGR01290 442 nifB nitrogenase cofactor biosynthesis protein Nif 99.95
TIGR02493235 PFLA pyruvate formate-lyase 1-activating enzyme. A 99.94
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 99.94
PRK00164331 moaA molybdenum cofactor biosynthesis protein A; R 99.93
PRK10076213 pyruvate formate lyase II activase; Provisional 99.93
PRK13762322 tRNA-modifying enzyme; Provisional 99.91
TIGR03821321 AblA_like_1 lysine-2,3-aminomutase-related protein 99.9
PLN02951373 Molybderin biosynthesis protein CNX2 99.89
COG2896322 MoaA Molybdenum cofactor biosynthesis enzyme [Coen 99.89
TIGR02668302 moaA_archaeal probable molybdenum cofactor biosynt 99.89
PRK13361329 molybdenum cofactor biosynthesis protein A; Provis 99.89
TIGR02495191 NrdG2 anaerobic ribonucleoside-triphosphate reduct 99.88
TIGR02666334 moaA molybdenum cofactor biosynthesis protein A, b 99.87
TIGR03278 404 methan_mark_10 putative methanogenesis marker prot 99.84
COG0731296 Fe-S oxidoreductases [Energy production and conver 99.84
PRK05301 378 pyrroloquinoline quinone biosynthesis protein PqqE 99.83
COG2100414 Predicted Fe-S oxidoreductase [General function pr 99.82
TIGR02109358 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. 99.81
TIGR03470318 HpnH hopanoid biosynthesis associated radical SAM 99.8
COG1313335 PflX Uncharacterized Fe-S protein PflX, homolog of 99.76
smart00729216 Elp3 Elongator protein 3, MiaB family, Radical SAM 99.76
TIGR03822321 AblA_like_2 lysine-2,3-aminomutase-related protein 99.73
PRK13758370 anaerobic sulfatase-maturase; Provisional 99.73
TIGR00238331 KamA family protein. Note that the E. coli homolog 99.71
PF04055166 Radical_SAM: Radical SAM superfamily; InterPro: IP 99.69
cd01335204 Radical_SAM Radical SAM superfamily. Enzymes of th 99.67
TIGR03365238 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn 99.67
PRK13745 412 anaerobic sulfatase-maturase; Provisional 99.66
COG0535347 Predicted Fe-S oxidoreductases [General function p 99.63
TIGR03820417 lys_2_3_AblA lysine-2,3-aminomutase. This model de 99.62
COG5014228 Predicted Fe-S oxidoreductase [General function pr 99.61
COG0641 378 AslB Arylsulfatase regulator (Fe-S oxidoreductase) 99.6
PRK07094323 biotin synthase; Provisional 99.57
TIGR02491154 NrdG anaerobic ribonucleoside-triphosphate reducta 99.54
PRK09240371 thiH thiamine biosynthesis protein ThiH; Reviewed 99.51
PF13353139 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 99.47
TIGR00433296 bioB biotin synthetase. Catalyzes the last step of 99.47
TIGR01125430 MiaB-like tRNA modifying enzyme YliG, TIGR01125. T 99.45
PRK08508279 biotin synthase; Provisional 99.43
PF13394119 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 99.42
TIGR02826147 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph 99.42
PRK06256336 biotin synthase; Validated 99.4
PRK14862440 rimO ribosomal protein S12 methylthiotransferase; 99.39
PRK14338459 (dimethylallyl)adenosine tRNA methylthiotransferas 99.38
COG0602212 NrdG Organic radical activating enzymes [Posttrans 99.36
TIGR02026497 BchE magnesium-protoporphyrin IX monomethyl ester 99.36
PRK11121154 nrdG anaerobic ribonucleotide reductase-activating 99.36
COG1509369 KamA Lysine 2,3-aminomutase [Amino acid transport 99.33
TIGR02351366 thiH thiazole biosynthesis protein ThiH. Members t 99.32
TIGR03471472 HpnJ hopanoid biosynthesis associated radical SAM 99.3
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.3
TIGR00089429 RNA modification enzyme, MiaB family. This subfami 99.29
PRK05481289 lipoyl synthase; Provisional 99.29
PRK15108345 biotin synthase; Provisional 99.29
TIGR03699340 mena_SCO4550 menaquinone biosynthesis protein, SCO 99.29
PRK14334440 (dimethylallyl)adenosine tRNA methylthiotransferas 99.28
TIGR00423309 radical SAM domain protein, CofH subfamily. This p 99.26
PRK14332449 (dimethylallyl)adenosine tRNA methylthiotransferas 99.26
TIGR01579414 MiaB-like-C MiaB-like tRNA modifying enzyme. This 99.25
PRK12928290 lipoyl synthase; Provisional 99.24
PLN02389379 biotin synthase 99.23
COG2108353 Uncharacterized conserved protein related to pyruv 99.22
PRK05799 374 coproporphyrinogen III oxidase; Provisional 99.21
PRK14325444 (dimethylallyl)adenosine tRNA methylthiotransferas 99.21
TIGR00539360 hemN_rel putative oxygen-independent coproporphyri 99.2
PRK06245336 cofG FO synthase subunit 1; Reviewed 99.2
TIGR00510302 lipA lipoate synthase. The family shows strong seq 99.2
PRK14331437 (dimethylallyl)adenosine tRNA methylthiotransferas 99.2
PRK06267350 hypothetical protein; Provisional 99.2
PRK14328439 (dimethylallyl)adenosine tRNA methylthiotransferas 99.19
PRK14327509 (dimethylallyl)adenosine tRNA methylthiotransferas 99.19
PRK14326502 (dimethylallyl)adenosine tRNA methylthiotransferas 99.18
PRK05660 378 HemN family oxidoreductase; Provisional 99.18
PRK14336418 (dimethylallyl)adenosine tRNA methylthiotransferas 99.17
PRK14339420 (dimethylallyl)adenosine tRNA methylthiotransferas 99.17
KOG2876323 consensus Molybdenum cofactor biosynthesis pathway 99.17
PRK13347 453 coproporphyrinogen III oxidase; Provisional 99.16
PRK14340445 (dimethylallyl)adenosine tRNA methylthiotransferas 99.16
TIGR01578420 MiaB-like-B MiaB-like tRNA modifying enzyme, archa 99.16
PRK09249 453 coproporphyrinogen III oxidase; Provisional 99.15
PRK14330434 (dimethylallyl)adenosine tRNA methylthiotransferas 99.15
TIGR01574438 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 99.14
PRK08446350 coproporphyrinogen III oxidase; Provisional 99.14
PRK14337446 (dimethylallyl)adenosine tRNA methylthiotransferas 99.14
PLN02428349 lipoic acid synthase 99.13
TIGR00538 455 hemN oxygen-independent coproporphyrinogen III oxi 99.13
PRK14329467 (dimethylallyl)adenosine tRNA methylthiotransferas 99.12
PRK08599 377 coproporphyrinogen III oxidase; Provisional 99.12
PRK14335455 (dimethylallyl)adenosine tRNA methylthiotransferas 99.09
PRK08207488 coproporphyrinogen III oxidase; Provisional 99.08
PRK05628 375 coproporphyrinogen III oxidase; Validated 99.07
PRK14333448 (dimethylallyl)adenosine tRNA methylthiotransferas 99.05
PRK08208 430 coproporphyrinogen III oxidase; Validated 99.05
COG0621437 MiaB 2-methylthioadenine synthetase [Translation, 99.03
TIGR01212302 radical SAM protein, TIGR01212 family. This unchar 99.03
TIGR03700351 mena_SCO4494 putative menaquinone biosynthesis pro 99.01
TIGR01210313 conserved hypothetical protein TIGR01210. This fam 99.01
PRK00955620 hypothetical protein; Provisional 98.96
COG1625 414 Fe-S oxidoreductase, related to NifB/MoaA family [ 98.96
PRK08445348 hypothetical protein; Provisional 98.87
PRK07360371 FO synthase subunit 2; Reviewed 98.87
COG0502335 BioB Biotin synthase and related enzymes [Coenzyme 98.81
TIGR03550322 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav 98.81
PRK07379 400 coproporphyrinogen III oxidase; Provisional 98.8
PRK09613 469 thiH thiamine biosynthesis protein ThiH; Reviewed 98.77
COG1964 475 Predicted Fe-S oxidoreductases [General function p 98.76
PRK05904353 coproporphyrinogen III oxidase; Provisional 98.76
PRK06294 370 coproporphyrinogen III oxidase; Provisional 98.74
PRK08444353 hypothetical protein; Provisional 98.74
PRK01254707 hypothetical protein; Provisional 98.73
PRK05927350 hypothetical protein; Provisional 98.71
PRK09058 449 coproporphyrinogen III oxidase; Provisional 98.69
COG1032490 Fe-S oxidoreductase [Energy production and convers 98.66
PRK09057 380 coproporphyrinogen III oxidase; Provisional 98.65
PRK05926370 hypothetical protein; Provisional 98.64
COG1533297 SplB DNA repair photolyase [DNA replication, recom 98.62
PRK08898 394 coproporphyrinogen III oxidase; Provisional 98.6
PRK08629 433 coproporphyrinogen III oxidase; Provisional 98.57
PRK09234843 fbiC FO synthase; Reviewed 98.55
PRK06582 390 coproporphyrinogen III oxidase; Provisional 98.53
PTZ00413398 lipoate synthase; Provisional 98.4
COG1856275 Uncharacterized homolog of biotin synthetase [Func 98.32
PRK09234 843 fbiC FO synthase; Reviewed 98.17
COG1244358 Predicted Fe-S oxidoreductase [General function pr 98.05
TIGR01211 522 ELP3 histone acetyltransferase, ELP3 family. The S 98.04
TIGR03279 433 cyano_FeS_chp putative FeS-containing Cyanobacteri 98.03
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 97.91
COG0635 416 HemN Coproporphyrinogen III oxidase and related Fe 97.7
COG2516339 Biotin synthase-related enzyme [General function p 97.6
COG0320306 LipA Lipoate synthase [Coenzyme metabolism] 97.47
COG1031560 Uncharacterized Fe-S oxidoreductase [Energy produc 97.1
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 97.01
KOG1160601 consensus Fe-S oxidoreductase [Energy production a 96.9
KOG2672360 consensus Lipoate synthase [Coenzyme transport and 96.65
COG1243 515 ELP3 Histone acetyltransferase [Transcription / Ch 96.15
COG4277404 Predicted DNA-binding protein with the Helix-hairp 95.98
COG1242312 Predicted Fe-S oxidoreductase [General function pr 95.45
KOG2492552 consensus CDK5 activator-binding protein [Signal t 94.32
KOG4355547 consensus Predicted Fe-S oxidoreductase [General f 92.38
KOG2900380 consensus Biotin synthase [Coenzyme transport and 90.48
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-95  Score=706.76  Aligned_cols=332  Identities=37%  Similarity=0.612  Sum_probs=318.2

Q ss_pred             CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEe
Q 017203            7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKL   86 (375)
Q Consensus         7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~   86 (375)
                      --++++||++++.++|+|+|||+|||+|+|++++.+|++|+||||++|++|++.|.+..+++.+.+.|.||.|+||||++
T Consensus        11 ~~l~~~el~~~~~~~g~~~fRa~Qi~~wiy~~~~~~~~~mtnlpk~lR~~L~~~~~i~~l~~~~~~~S~Dg~T~K~L~~l   90 (371)
T PRK14461         11 YDLNLAELTELLTAWGQPAFRARQLYRHLYVNLADSVLAMTDLPLALRERLTAELPLSTLRLEQVQIGDNGLTRKALFRL   90 (371)
T ss_pred             ccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhccccCCcceEEEEECCCCCeEEEEEEc
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999789999999


Q ss_pred             cCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh------
Q 017203           87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------  160 (375)
Q Consensus        87 ~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~------  160 (375)
                      +||..||||+||++              .|.|+|||||+||+|+|.||++|++|+.|||+++||++|+..+...      
T Consensus        91 ~DG~~IEtVli~~~--------------~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~  156 (371)
T PRK14461         91 PDGAVVETVLMIYP--------------DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGA  156 (371)
T ss_pred             CCCCEEEEEEEecC--------------CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhccc
Confidence            99999999999985              4799999999999999999999999999999999999999876432      


Q ss_pred             ----------CCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecC
Q 017203          161 ----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA  229 (375)
Q Consensus       161 ----------~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a  229 (375)
                                .++++||||||||||+||+++.++++.+.+. |+++|.++|||||+|++|.|++|+++.+.+.|+|||||
T Consensus       157 ~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA  236 (371)
T PRK14461        157 AISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHA  236 (371)
T ss_pred             ccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCC
Confidence                      2489999999999999999999999999998 99999999999999999999999998878999999999


Q ss_pred             CCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC------CCEEEEeecCC
Q 017203          230 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF------QVVVNLIPFNP  303 (375)
Q Consensus       230 ~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~------~~~vnLip~np  303 (375)
                      ++++.|++|||+|++|+++++++++++|.++++++|+|||+|++|+||+++++++|+++++++      .++||||||||
T Consensus       237 ~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np  316 (371)
T PRK14461        237 PDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNP  316 (371)
T ss_pred             CCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999      89999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccc
Q 017203          304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL  354 (375)
Q Consensus       304 ~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~  354 (375)
                      + ++.+|.+|+.+.+.+|+++|+ ++|+.|++|+++|+||+||||||+.++
T Consensus       317 ~-~~~~~~~ps~~~i~~F~~~L~-~~gi~vtiR~s~G~DI~AACGQL~~~~  365 (371)
T PRK14461        317 V-PGTPLGRSERERVTTFQRILT-DYGIPCTVRVERGVEIAAACGQLAGRH  365 (371)
T ss_pred             C-CCCCCCCCCHHHHHHHHHHHH-HCCceEEEeCCCCcChhhcCcccccCC
Confidence            8 578999999999999999999 799999999999999999999999876

>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00048 radical SAM enzyme, Cfr family Back     alignment and domain information
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional Back     alignment and domain information
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB Back     alignment and domain information
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed Back     alignment and domain information
>PRK10076 pyruvate formate lyase II activase; Provisional Back     alignment and domain information
>PRK13762 tRNA-modifying enzyme; Provisional Back     alignment and domain information
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>PLN02951 Molybderin biosynthesis protein CNX2 Back     alignment and domain information
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal Back     alignment and domain information
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional Back     alignment and domain information
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial Back     alignment and domain information
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 Back     alignment and domain information
>COG0731 Fe-S oxidoreductases [Energy production and conversion] Back     alignment and domain information
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional Back     alignment and domain information
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E Back     alignment and domain information
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH Back     alignment and domain information
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] Back     alignment and domain information
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>PRK13758 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>TIGR00238 KamA family protein Back     alignment and domain information
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation Back     alignment and domain information
>cd01335 Radical_SAM Radical SAM superfamily Back     alignment and domain information
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Back     alignment and domain information
>PRK13745 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase Back     alignment and domain information
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] Back     alignment and domain information
>PRK07094 biotin synthase; Provisional Back     alignment and domain information
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A Back     alignment and domain information
>TIGR00433 bioB biotin synthetase Back     alignment and domain information
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A Back     alignment and domain information
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK06256 biotin synthase; Validated Back     alignment and domain information
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase Back     alignment and domain information
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional Back     alignment and domain information
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>TIGR00089 RNA modification enzyme, MiaB family Back     alignment and domain information
>PRK05481 lipoyl synthase; Provisional Back     alignment and domain information
>PRK15108 biotin synthase; Provisional Back     alignment and domain information
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family Back     alignment and domain information
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme Back     alignment and domain information
>PRK12928 lipoyl synthase; Provisional Back     alignment and domain information
>PLN02389 biotin synthase Back     alignment and domain information
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] Back     alignment and domain information
>PRK05799 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK06245 cofG FO synthase subunit 1; Reviewed Back     alignment and domain information
>TIGR00510 lipA lipoate synthase Back     alignment and domain information
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK06267 hypothetical protein; Provisional Back     alignment and domain information
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK05660 HemN family oxidoreductase; Provisional Back     alignment and domain information
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK13347 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information
>PRK09249 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>PRK08446 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PLN02428 lipoic acid synthase Back     alignment and domain information
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK08599 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK08207 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05628 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK08208 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01212 radical SAM protein, TIGR01212 family Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>TIGR01210 conserved hypothetical protein TIGR01210 Back     alignment and domain information
>PRK00955 hypothetical protein; Provisional Back     alignment and domain information
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] Back     alignment and domain information
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Back     alignment and domain information
>PRK07379 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>PRK05904 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK06294 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>PRK01254 hypothetical protein; Provisional Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>PRK09058 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>COG1032 Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK09057 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05926 hypothetical protein; Provisional Back     alignment and domain information
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08898 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08629 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>PRK06582 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PTZ00413 lipoate synthase; Provisional Back     alignment and domain information
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family Back     alignment and domain information
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] Back     alignment and domain information
>COG2516 Biotin synthase-related enzyme [General function prediction only] Back     alignment and domain information
>COG0320 LipA Lipoate synthase [Coenzyme metabolism] Back     alignment and domain information
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] Back     alignment and domain information
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
3rf9_A404 X-Ray Structure Of Rlmn From Escherichia Coli Lengt 4e-50
3rfa_A404 X-Ray Structure Of Rlmn From Escherichia Coli In Co 8e-49
>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli Length = 404 Back     alignment and structure 
Iteration: 1

 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
           P   R+TLC+SSQVGC + C FC+T   GF  NL   EI+ Q+  A+++           
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
           I NVV MGMGEPL N   +V A+ IM     F +S +R+T+ST G+V A++K   D+  +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
            LA+SLHAP  ++R +I+P  + + +E  + A++ Y + S   Q ++ IEY+MLD VND 
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
            +HAHQL +LL+     +NLIP+NP       R SS+ ++  F K+L  SY   T VRK 
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 339 MGQDISGACGQLVVNLPDK 357
            G DI  ACGQL  ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex With S- Adenosylmethionine Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 1e-121
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Length = 404 Back     alignment and structure
 Score =  355 bits (914), Expect = e-121
 Identities = 117/329 (35%), Positives = 174/329 (52%), Gaps = 32/329 (9%)

Query: 42  EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
            +DE   +       L+   +     +     SSD  T K  + +     VE V +  D 
Sbjct: 56  NFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDG-TIKWAIAVG-DQRVETVYIPEDD 113

Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
                         R+TLC+SSQVGC + C FC+T   GF  NL   EI+ Q+  A+++ 
Sbjct: 114 --------------RATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIV 159

Query: 162 N---------IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAI 211
                     I NVV MGMGEPL N   +V A+ IM     F +S +R+T+ST G+V A+
Sbjct: 160 GAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 219

Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIE 268
           +K    +  + LA+SLHAP  ++R +I+P  + + +E  + A++ Y + S   Q ++ IE
Sbjct: 220 DKLGDMID-VALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIE 278

Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
           Y+MLD VND  +HAHQL +LL+     +NLIP+NP    + +  SS+ ++  F K+L  S
Sbjct: 279 YVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPG-APYGRSSNSRIDRFSKVLM-S 336

Query: 329 YNIRTTVRKQMGQDISGACGQLVVNLPDK 357
           Y   T VRK  G DI  ACGQL  ++ D+
Sbjct: 337 YGFTTIVRKTRGDDIDAACGQLAGDVIDR 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 100.0
2yx0_A342 Radical SAM enzyme; predicted tRNA modification en 99.97
3c8f_A245 Pyruvate formate-lyase 1-activating enzyme; adoMet 99.94
2z2u_A311 UPF0026 protein MJ0257; metal binding protein; 2.4 99.93
1tv8_A340 MOAA, molybdenum cofactor biosynthesis protein A; 99.87
3can_A182 Pyruvate-formate lyase-activating enzyme; structur 99.86
2a5h_A416 L-lysine 2,3-aminomutase; radical SAM, four-iron-f 99.83
3iix_A348 Biotin synthetase, putative; adoMet radical, SAM r 99.79
3t7v_A350 Methylornithine synthase PYLB; TIM-barrel fold, mu 99.79
1r30_A369 Biotin synthase; SAM radical protein, TIM barrel, 99.67
2qgq_A304 Protein TM_1862; alpha-beta protein, structural ge 99.59
1olt_A 457 Oxygen-independent coproporphyrinogen III oxidase; 99.35
4fhd_A368 Spore photoproduct lyase; partial TIM-barrel, DNA 98.19
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 82.99
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-83  Score=636.29  Aligned_cols=329  Identities=37%  Similarity=0.607  Sum_probs=298.2

Q ss_pred             CCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEecC
Q 017203            9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQN   88 (375)
Q Consensus         9 ~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~~d   88 (375)
                      |+++||++++.++|+|+|||+|||+|||++++.+|++||||||++|++|++.|.+..+++++.+.|+|| |+||||+| |
T Consensus        23 ~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~~~~~~~mt~l~k~~r~~l~~~~~~~~~~~~~~~~s~dg-t~K~l~~l-d  100 (404)
T 3rfa_A           23 LNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDG-TIKWAIAV-G  100 (404)
T ss_dssp             CCHHHHHHHHHHTTCCHHHHHHHHHHHHHSCCCCGGGCTTSCHHHHHHHHHHEECCCCEEEEEEECTTS-CEEEEEEE-T
T ss_pred             CCHHHHHHHHHHcCCcchHHHHHHHHHHhcCCCChHHhcccCHHHHHHHHhcCCCCCCceEEEEECCCC-CEEEEEEc-C
Confidence            679999999999999999999999999999999999999999999999999999999999999999999 99999999 9


Q ss_pred             CCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh--------
Q 017203           89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--------  160 (375)
Q Consensus        89 g~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~--------  160 (375)
                      |..||||+||++              .|.|+|||||+||||+|.||+++..++.++++++||++|+..+...        
T Consensus       101 g~~iEtV~i~~~--------------~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~g  166 (404)
T 3rfa_A          101 DQRVETVYIPED--------------DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTG  166 (404)
T ss_dssp             TEEEEEEEEECS--------------SCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHS
T ss_pred             CceEEEEEEecC--------------CCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccc
Confidence            999999999985              5799999999999999999999999899999999999999876532        


Q ss_pred             -CCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhh
Q 017203          161 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI  238 (375)
Q Consensus       161 -~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i  238 (375)
                       .++++|+||||||||+|++++.++++.+++. |++++.++++|+|||++|.+++|++.. .+.|+||||+++++.|+++
T Consensus       167 g~~i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~-d~~LaiSLka~d~e~~~~i  245 (404)
T 3rfa_A          167 QRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDEIRDEI  245 (404)
T ss_dssp             SCSCSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHC-CCEEEEECCCSSHHHHHHH
T ss_pred             CCCccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhh-cceEEecccCCCHHHHHHh
Confidence             2588999999999999999999999999996 999999999999999999889999874 5789999999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCC---cEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcH
Q 017203          239 MPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD  315 (375)
Q Consensus       239 ~p~~~~~~~~~vl~~l~~~~~~~g~---~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~  315 (375)
                      +|++++++++++++++++|+.++|.   +|+++|+|+||+||+++++++|++|+++++++||||||||. ++.+|++|+.
T Consensus       246 ~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~-~~~~~~~ps~  324 (404)
T 3rfa_A          246 VPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPF-PGAPYGRSSN  324 (404)
T ss_dssp             SGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCC-TTCCCCBCCH
T ss_pred             cCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCC-CCCCCCCCCH
Confidence            9999999999999999989888888   99999999999999999999999999999999999999998 5788999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203          316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD  356 (375)
Q Consensus       316 e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~  356 (375)
                      +++++|+++|+ ++|+.+++|+++|.||+||||||+.+..+
T Consensus       325 e~i~~f~~iL~-~~Gi~vtiR~~~G~di~aaCGQL~~~~~~  364 (404)
T 3rfa_A          325 SRIDRFSKVLM-SYGFTTIVRKTRGDDIDAACGQLAGDVID  364 (404)
T ss_dssp             HHHHHHHHHHH-HTTCEEEECCCCCC---------------
T ss_pred             HHHHHHHHHHH-HcCCcEEEcCCCCcccccccccchhhhhh
Confidence            99999999999 79999999999999999999999987654
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Back     alignment and structure
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Back     alignment and structure
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Back     alignment and structure
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Back     alignment and structure
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Back     alignment and structure
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Back     alignment and structure
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Back     alignment and structure
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Back     alignment and structure
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1tv8a_327 Molybdenum cofactor biosynthesis protein A MoaA {S 99.67
d1r30a_312 Biotin synthase {Escherichia coli [TaxId: 562]} 99.04
d1olta_ 441 Oxygen-independent coproporphyrinogen III oxidase 98.35
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.67  E-value=2.6e-15  Score=141.31  Aligned_cols=175  Identities=15%  Similarity=0.216  Sum_probs=129.7

Q ss_pred             eEEEEeecCCCCCcCccccCCCC--------CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHh
Q 017203          117 STLCISSQVGCKMGCNFCATGTM--------GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM  188 (375)
Q Consensus       117 ~tl~vssq~GCnl~C~fC~~~~~--------~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l  188 (375)
                      ..|+|+.+..||++|.||+.+..        .....|+.+++...+..+.+ .++..|.|+| |||+++++ +.+.+..+
T Consensus        12 ~~l~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~-~g~~~v~~~G-GEp~l~~~-~~e~i~~~   88 (327)
T d1tv8a_          12 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-LGVKKIRITG-GEPLMRRD-LDVLIAKL   88 (327)
T ss_dssp             CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-TTCCEEEEES-SCGGGSTT-HHHHHHHH
T ss_pred             CcEEEEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHH-cCCeEEEeCC-Cccccccc-HHHHHHHH
Confidence            36888889999999999975321        11235888888776665554 4688999999 99999965 66666666


Q ss_pred             hCCCCCCCCCeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcE
Q 017203          189 TGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI  265 (375)
Q Consensus       189 ~~~g~~i~~~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v  265 (375)
                      .+.+.    ....+.|||.+   ..+.+|.+.+. ..+.||+++.+++.++.+.+.  ...++.+++++ +.+.+.|.++
T Consensus        89 ~~~~~----~~~~~~Tng~ll~~~~~~~l~~~g~-~~i~iSldg~~~e~~~~~rg~--~g~~~~~~~~~-~~~~~~g~~~  160 (327)
T d1tv8a_          89 NQIDG----IEDIGLTTNGLLLKKHGQKLYDAGL-RRINVSLDAIDDTLFQSINNR--NIKATTILEQI-DYATSIGLNV  160 (327)
T ss_dssp             TTCTT----CCEEEEEECSTTHHHHHHHHHHHTC-CEEEEECCCSSHHHHHHHHSS--CCCHHHHHHHH-HHHHHTTCEE
T ss_pred             hhhcc----ccccccccccccchhHHHHHHHcCC-CEEeeecccCCHHHhhhheee--ccccchhhhHH-HHHHHcCCCc
Confidence            55531    23444555543   24677777753 569999999999999998753  35689999999 5667889999


Q ss_pred             EEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCC
Q 017203          266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI  304 (375)
Q Consensus       266 ~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~  304 (375)
                      .+.++++++.|.  +++..+.+++...++.+.+.++.+.
T Consensus       161 ~~~~~v~~~~n~--~~~~~~~~~~~~~~~~~~~~~~~~~  197 (327)
T d1tv8a_         161 KVNVVIQKGIND--DQIIPMLEYFKDKHIEIRFIEFMDV  197 (327)
T ss_dssp             EEEEEECTTTTG--GGHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             ceeEEEecCccc--cccHHHHHHHHhhccccceeeeecc
Confidence            999999988765  5688899999988877666665443
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure