Citrus Sinensis ID: 017484

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
cccHHHHHHccccccHHHHccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHccHHHHHHHcccccHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHcccccEEEEEEEEcccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccc
mrskdkisyfydgdvgsvyfgpnhpmkphrlynlgedcpvFENLFEFCQIYAGGTIDAARRLNNQLCDIAInwagglhhakkceasgfcyinDLVLGILELLKYHARVLYIDidvhhgdgveeafYFTDRVMtvsfhkfgdlffpgtgdvkeigeregkfyainvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCgadslagdrlgcfnlsidgHAECVRFVKKfnlpllvtggggytkenvARCWTVETGilldtelpneipeneyikyfapecslripnghienlnskSYLSTIKMQVLENLRsiqhapsvqmqevppdfyipefdedeqnpdermdqhtqdkqiqrddefyegdndndhmdvg
mrskdkisyfydgdvgsvyfGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAInvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLvtggggytkenvARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQhtqdkqiqrddefyegdndndhmdvg
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
******ISYFYDGDVGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI***********************************************************
*RSKDKISYFYDGDVGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNG*I**LNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVP***********************************************
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDE***************IQRDDEFYEGDNDNDHMDVG
**SKDKISYFYDGDVGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQ**P***********************************************
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MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query371 2.2.26 [Sep-21-2011]
Q8H0W2426 Histone deacetylase 9 OS= yes no 0.986 0.859 0.778 0.0
P56517480 Histone deacetylase 1 OS= yes no 0.978 0.756 0.529 1e-126
Q4QQW4482 Histone deacetylase 1 OS= yes no 0.870 0.670 0.549 1e-124
O42227480 Probable histone deacetyl N/A no 0.978 0.756 0.510 1e-124
O09106482 Histone deacetylase 1 OS= yes no 0.870 0.670 0.549 1e-124
Q32PJ8482 Histone deacetylase 1 OS= yes no 0.870 0.670 0.549 1e-124
Q5RAG0482 Histone deacetylase 1 OS= yes no 0.870 0.670 0.547 1e-123
Q13547482 Histone deacetylase 1 OS= yes no 0.870 0.670 0.547 1e-123
P56518 576 Histone deacetylase 1 OS= no no 0.978 0.630 0.528 1e-122
Q92769488 Histone deacetylase 2 OS= no no 0.975 0.741 0.521 1e-121
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1 Back     alignment and function desciption
 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/424 (77%), Positives = 353/424 (83%), Gaps = 58/424 (13%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMK------------------------PHRLY---- 32
           MRSKDKISYFYDGDVGSVYFGPNHPMK                        PH+ Y    
Sbjct: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM 60

Query: 33  ------------------------------NLGEDCPVFENLFEFCQIYAGGTIDAARRL 62
                                         NLGEDCPVFE+LFEFCQ+YAGGTIDAARRL
Sbjct: 61  AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRL 120

Query: 63  NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 122
           NN+LCDIAINWAGGLHHAKKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVE
Sbjct: 121 NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE 180

Query: 123 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 182
           EAFYFTDRVMTVSFHKFGD FFPGTGDVKEIGEREGKFYAINVPLKDGIDD+SF RLF+T
Sbjct: 181 EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRT 240

Query: 183 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 242
           IISKVVE Y PGAIVLQCGADSLA DRLGCFNLSIDGHAECV+FVKKFNLPLLVTGGGGY
Sbjct: 241 IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY 300

Query: 243 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIK 302
           TKENVARCWTVETGILLDTELPNEIPEN+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK
Sbjct: 301 TKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIK 360

Query: 303 MQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGD 362
           +Q+LENLR IQHAPSVQMQEVPPDFYIP+FDEDEQNPD R DQ ++DKQIQRDDE+++GD
Sbjct: 361 VQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDEYFDGD 420

Query: 363 NDND 366
           NDND
Sbjct: 421 NDND 424
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
356539296429 PREDICTED: histone deacetylase 9-like [G 1.0 0.864 0.804 0.0
224061587429 histone deacetylase [Populus trichocarpa 0.994 0.860 0.807 0.0
356542722429 PREDICTED: histone deacetylase 9-like [G 1.0 0.864 0.794 0.0
255639849429 unknown [Glycine max] 1.0 0.864 0.792 0.0
225453264430 PREDICTED: histone deacetylase 9 [Vitis 0.973 0.839 0.809 0.0
255576367429 histone deacetylase 1, 2 ,3, putative [R 0.997 0.862 0.792 0.0
147787408430 hypothetical protein VITISV_020659 [Viti 0.973 0.839 0.806 0.0
359479384458 PREDICTED: histone deacetylase 9-like [V 0.973 0.788 0.806 0.0
297734830430 unnamed protein product [Vitis vinifera] 0.973 0.839 0.806 0.0
357471905430 Histone deacetylase [Medicago truncatula 0.997 0.860 0.790 0.0
>gi|356539296|ref|XP_003538135.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/429 (80%), Positives = 358/429 (83%), Gaps = 58/429 (13%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMK------------------------PHRLY---- 32
           M SKDKI+YFYDGDVGSVYFG  HPMK                        PH+ Y    
Sbjct: 1   MPSKDKIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60

Query: 33  ------------------------------NLGEDCPVFENLFEFCQIYAGGTIDAARRL 62
                                         NLGEDCPVF+NLFEFCQIYAGGTIDAARRL
Sbjct: 61  AQFHSADYVEFLNRITPDTQHLFLKELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL 120

Query: 63  NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 122
           NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
Sbjct: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180

Query: 123 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 182
           EAFYFTDRVMTVSFHK+GDLFFPGTGD KEIGEREGKFYAINVPLKDGIDD+SFTRLFKT
Sbjct: 181 EAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKT 240

Query: 183 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 242
           IISKV+ETY PGAIVLQCGADSLAGDRLGCFNLSIDGHAECV FVK+FNLPLLVTGGGGY
Sbjct: 241 IISKVLETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVSFVKRFNLPLLVTGGGGY 300

Query: 243 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIK 302
           TKENVARCWTVETG+LLDTELPNEIPEN+YIKYFAPE SL+IPNG IENLNSKSYLSTIK
Sbjct: 301 TKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEFSLKIPNGQIENLNSKSYLSTIK 360

Query: 303 MQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGD 362
           MQVLENLR IQHAPSVQMQEVPPDFYIPEFDEDEQNPDER+DQHTQDK IQRDDE+Y+GD
Sbjct: 361 MQVLENLRCIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERLDQHTQDKHIQRDDEYYDGD 420

Query: 363 NDNDHMDVG 371
           NDND MDV 
Sbjct: 421 NDNDQMDVS 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061587|ref|XP_002300554.1| histone deacetylase [Populus trichocarpa] gi|222847812|gb|EEE85359.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356542722|ref|XP_003539814.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|255639849|gb|ACU20217.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225453264|ref|XP_002266492.1| PREDICTED: histone deacetylase 9 [Vitis vinifera] gi|297734674|emb|CBI16725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576367|ref|XP_002529076.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] gi|223531488|gb|EEF33320.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147787408|emb|CAN77816.1| hypothetical protein VITISV_020659 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479384|ref|XP_002270071.2| PREDICTED: histone deacetylase 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734830|emb|CBI17064.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357471905|ref|XP_003606237.1| Histone deacetylase [Medicago truncatula] gi|355507292|gb|AES88434.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query371
TAIR|locus:2098115426 HDA9 "histone deacetylase 9" [ 0.927 0.807 0.875 2.5e-186
UNIPROTKB|Q32PJ8482 HDAC1 "Histone deacetylase 1" 0.911 0.701 0.614 7.2e-133
MGI|MGI:108086482 Hdac1 "histone deacetylase 1" 0.911 0.701 0.614 9.2e-133
RGD|619975482 Hdac1l "histone deacetylase 1- 0.911 0.701 0.614 9.2e-133
UNIPROTKB|Q13547482 HDAC1 "Histone deacetylase 1" 0.911 0.701 0.611 8.2e-132
UNIPROTKB|E2R692487 HDAC1 "Uncharacterized protein 0.911 0.694 0.612 8.2e-132
UNIPROTKB|F6X8F5483 HDAC1 "Histone deacetylase" [C 0.911 0.699 0.612 8.2e-132
UNIPROTKB|J9NUI0489 HDAC1 "Histone deacetylase" [C 0.911 0.691 0.612 8.2e-132
UNIPROTKB|P56517480 HDAC1 "Histone deacetylase 1" 0.913 0.706 0.609 2e-130
UNIPROTKB|I3LG31489 LOC100622482 "Histone deacetyl 0.911 0.691 0.613 1.3e-129
TAIR|locus:2098115 HDA9 "histone deacetylase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1654 (587.3 bits), Expect = 2.5e-186, Sum P(2) = 2.5e-186
 Identities = 303/346 (87%), Positives = 328/346 (94%)

Query:    23 NHPMKPHRL--YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHA 80
             N  + P+ +  YNLGEDCPVFE+LFEFCQ+YAGGTIDAARRLNN+LCDIAINWAGGLHHA
Sbjct:    79 NQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLNNKLCDIAINWAGGLHHA 138

Query:    81 KKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFG 140
             KKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFG
Sbjct:   139 KKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFG 198

Query:   141 DLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQC 200
             D FFPGTGDVKEIGEREGKFYAINVPLKDGIDD+SF RLF+TIISKVVE Y PGAIVLQC
Sbjct:   199 DKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRTIISKVVEIYQPGAIVLQC 258

Query:   201 GADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 260
             GADSLA DRLGCFNLSIDGHAECV+FVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD
Sbjct:   259 GADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 318

Query:   261 TELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQM 320
             TELPNEIPEN+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK+Q+LENLR IQHAPSVQM
Sbjct:   319 TELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQM 378

Query:   321 QEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDND 366
             QEVPPDFYIP+FDEDEQNPD R DQ ++DKQIQRDDE+++GDNDND
Sbjct:   379 QEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDEYFDGDNDND 424
GO:0004407 "histone deacetylase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0016575 "histone deacetylation" evidence=IEA;ISS
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R692 HDAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X8F5 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI0 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LG31 LOC100622482 "Histone deacetylase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H0W2HDA9_ARATH3, ., 5, ., 1, ., 9, 80.77830.98650.8591yesno
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.58400.90020.7245yesno
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.51250.91910.8419yesno
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.54970.87060.6701yesno
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.54710.87060.6701yesno
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.54970.87060.6701yesno
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.54710.87060.6701yesno
Q4SFA0HDAC3_TETNG3, ., 5, ., 1, ., 9, 80.51540.97030.8411N/Ano
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.54380.88140.7551yesno
Q55BW2HDA12_DICDI3, ., 5, ., 1, ., 9, 80.62150.85170.7488yesno
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.52950.97840.7562yesno
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.54970.87060.6701yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.979
3rd Layer3.5.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HDA904
histone deacetylase (429 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 0.0
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 1e-176
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 1e-173
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 1e-161
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-146
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 1e-141
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-135
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-124
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 5e-91
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 3e-90
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 2e-89
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 1e-88
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 1e-85
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 4e-74
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 2e-39
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 2e-37
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 7e-37
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 7e-27
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 1e-23
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 2e-22
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 2e-22
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 3e-22
cd10006409 cd10006, HDAC4, Histone deacetylase 4 2e-21
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 3e-21
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 3e-21
cd10007420 cd10007, HDAC5, Histone deacetylase 5 2e-20
cd10009379 cd10009, HDAC9, Histone deacetylase 9 3e-20
cd10008378 cd10008, HDAC7, Histone deacetylase 7 2e-19
cd11683337 cd11683, HDAC10, Histone deacetylase 10 1e-12
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1e-12
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 9e-06
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information 
 Score =  524 bits (1351), Expect = 0.0
 Identities = 197/297 (66%), Positives = 242/297 (81%), Gaps = 3/297 (1%)

Query: 32  YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
           +N+G+DCPVF  LF+FC +Y G +++ A +LN+++CDIAINW+GGLHHAKK EASGFCY+
Sbjct: 86  FNVGDDCPVFPGLFDFCSMYTGASLEGATKLNHKICDIAINWSGGLHHAKKFEASGFCYV 145

Query: 92  NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
           ND+V+ ILELLKYH RVLYIDID+HHGDGV+EAFY TDRVMTVSFHK+G+ FFPGTGD+ 
Sbjct: 146 NDIVIAILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMY 205

Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
           E+G   G++Y++NVPLKDGIDD S+ +LFK +I +V++ Y P  IVLQCGADSL  DRLG
Sbjct: 206 EVGAESGRYYSVNVPLKDGIDDQSYLQLFKPVIQQVIDFYQPTCIVLQCGADSLGCDRLG 265

Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
           CFNLSI GH ECV FVK FN+PLLV GGGGYT  NVARCWT ET +L+D E+ NE+P NE
Sbjct: 266 CFNLSIKGHGECVEFVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEEISNELPYNE 325

Query: 272 YIKYFAPECSLRIPN--GHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPD 326
           Y +YFAP+ +L  P+    IEN NSK YL  I+  V ENL+ + HAPSVQMQ+VPPD
Sbjct: 326 YFEYFAPDFTLH-PDVSTRIENQNSKQYLDQIRQTVFENLKMLNHAPSVQMQDVPPD 381

HDAC3 is a Zn-dependent class I histone deacetylase that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. In order to target specific chromatin regions, HDAC3 can interact with DNA-binding proteins (transcriptional factors) either directly or after forming complexes with a number of other proteins, as observed for the SMPT/N-CoR complex which recruits human HDAC3 to specific chromatin loci and activates deacetylation. Human HDAC3 is also involved in deacetylation of non-histone substrates such as RelA, SPY and p53 factors. This protein can also down-regulate p53 function and subsequently modulate cell growth and apoptosis. This gene is therefore regarded as a potential tumor suppressor gene. HDAC3 plays a role in various physiological processes, including subcellular protein localization, cell cycle progression, cell differentiation, apoptosis and survival. HDAC3 has been found to be overexpressed in some tumors including leukemia, lung carcinoma, colon cancer and maxillary carcinoma. Thus, inhibitors precisely targeting HDAC3 (in some cases together with retinoic acid or hyperthermia) could be a therapeutic drug option. Length = 381
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 371
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 99.97
KOG1343 797 consensus Histone deacetylase complex, catalytic c 99.95
COG3914620 Spy Predicted O-linked N-acetylglucosamine transfe 85.95
cd04501183 SGNH_hydrolase_like_4 Members of the SGNH-hydrolas 82.46
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-130  Score=953.56  Aligned_cols=364  Identities=67%  Similarity=1.214  Sum_probs=352.0

Q ss_pred             CCCCeEEEEEcCCcccccCCCCCCCCchhh--------------------------------------------------
Q 017484            2 RSKDKISYFYDGDVGSVYFGPNHPMKPHRL--------------------------------------------------   31 (371)
Q Consensus         2 ~~~~~v~y~~~~~~~~~~~g~~hP~~p~R~--------------------------------------------------   31 (371)
                      .+|+||+|+|++++++|+||++|||||+|+                                                  
T Consensus         4 ~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~   83 (425)
T KOG1342|consen    4 LIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENME   83 (425)
T ss_pred             cCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccccc
Confidence            468999999999999999999999999998                                                  


Q ss_pred             --------cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHH
Q 017484           32 --------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK  103 (371)
Q Consensus        32 --------~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~  103 (371)
                              ||+++|||+|++||+||++++||||.||++|+++++||||||+||+|||||++||||||+|||||||++|||
T Consensus        84 ~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK  163 (425)
T KOG1342|consen   84 TFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLK  163 (425)
T ss_pred             ccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHH
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHH
Q 017484          104 YHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTI  183 (371)
Q Consensus       104 ~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~v  183 (371)
                      .++||||||||+|||||||+|||.++||||||||+|++.||||||+++|+|.++||+|+|||||.+|++|++|..+|++|
T Consensus       164 ~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pI  243 (425)
T KOG1342|consen  164 YHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPI  243 (425)
T ss_pred             hCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCC
Q 017484          184 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL  263 (371)
Q Consensus       184 i~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~  263 (371)
                      |.++++.|+|++||+|||+|++.+||||+||||++||++|+++++++++|+++|||||||++||||||+|+|++++|+++
T Consensus       244 i~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~  323 (425)
T KOG1342|consen  244 ISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQEL  323 (425)
T ss_pred             HHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCccccCCccccc
Q 017484          264 PNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERM  343 (371)
Q Consensus       264 ~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l~~apsvq~~~~p~~~~~~~~~~~~~~~~~~~  343 (371)
                      +++||+|+||+||+|||+|++.+++++|+|+++||++|++++.+|||++++|||||||.+|+.-......+++++++.|.
T Consensus       324 ~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~d~~~  403 (425)
T KOG1342|consen  324 PNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDPDLRS  403 (425)
T ss_pred             cccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998333333336677888898


Q ss_pred             ccccccccCCCCCCCCCCCCCC
Q 017484          344 DQHTQDKQIQRDDEFYEGDNDN  365 (371)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~  365 (371)
                      .+...|++++.++||+|+++++
T Consensus       404 ~~~~~~~~~~~~~e~~d~~~~~  425 (425)
T KOG1342|consen  404 SQESEDKDVQDDNEFYDGENEG  425 (425)
T ss_pred             chhhhhcccccchhhcccccCC
Confidence            9999999999999999998763

>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-114
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 1e-111
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 8e-76
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 8e-76
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 9e-76
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 9e-76
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 9e-76
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 2e-75
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 3e-75
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 3e-75
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 6e-75
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 9e-75
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 1e-74
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 1e-74
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 5e-34
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 8e-34
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 1e-19
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 2e-19
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 2e-19
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 2e-19
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 2e-18
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 9e-18
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 2e-15
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 2e-15
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 4e-11
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 3e-10
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/289 (64%), Positives = 230/289 (79%), Gaps = 1/289 (0%)
Query: 32  YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
           +N+G+DCPVF  LFEFC  Y G ++  A +LNN++CDIAINWAGGLHHAKK EASGFCY+
Sbjct: 88  FNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYV 147
Query: 92  NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
           ND+V+GILELLKYH RVLYIDID+HHGDGV+EAFY TDRVMTVSFHK+G+ FFPGTGD+ 
Sbjct: 148 NDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMY 207
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
           E+G   G++Y +NVPL+DGIDD S+  LF+ +I++VV+ Y P  IVLQCGADSL  DRLG
Sbjct: 208 EVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLG 267
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
           CFNLSI GH ECV +VK FN+PLLV GGGGYT  NVARCWT ET +L++  +  E+P +E
Sbjct: 268 CFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSE 327
Query: 272 YIKYFAPECSLRI-PNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ 319
           Y +YFAP+ +L    +  IEN NS+ YL  I+  + ENL+ + HAPSVQ
Sbjct: 328 YFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query371
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 0.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 1e-173
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 1e-173
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 1e-153
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-42
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 3e-40
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 7e-39
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 1e-34
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
 Score =  507 bits (1307), Expect = 0.0
 Identities = 126/298 (42%), Positives = 188/298 (63%)

Query: 24  HPMKPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKC 83
                   Y LG  CP  E +F++     G TI AA+ L + +C +AINW+GG HHAKK 
Sbjct: 88  DDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKD 147

Query: 84  EASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLF 143
           EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF   F
Sbjct: 148 EASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGF 207

Query: 144 FPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGAD 203
           FPGTGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V + + P A+VLQ GAD
Sbjct: 208 FPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGAD 267

Query: 204 SLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL 263
           ++AGD +  FN++  G  +C++++ ++ L  L+ GGGGY   N ARCWT  TG++L   L
Sbjct: 268 TIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTL 327

Query: 264 PNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQ 321
            +EIP++E+   + P+  L I      + N    +  I   +  NL+ +         
Sbjct: 328 SSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGRSHHH 385
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
4hf7_A209 Putative acylhydrolase; PF13472 family, structural 82.58
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.8e-104  Score=790.81  Aligned_cols=316  Identities=64%  Similarity=1.219  Sum_probs=304.9

Q ss_pred             CCeEEEEEcCCcccccCCCCCCCCchhh----------------------------------------------------
Q 017484            4 KDKISYFYDGDVGSVYFGPNHPMKPHRL----------------------------------------------------   31 (371)
Q Consensus         4 ~~~v~y~~~~~~~~~~~g~~hP~~p~R~----------------------------------------------------   31 (371)
                      ||||+|+||+++++|+||++|||+|.|+                                                    
T Consensus         2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~   81 (376)
T 4a69_A            2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF   81 (376)
T ss_dssp             CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred             CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence            6799999999999999999999999997                                                    


Q ss_pred             ------cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHhC
Q 017484           32 ------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH  105 (371)
Q Consensus        32 ------~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~  105 (371)
                            |+++.|||+|+++|++|++++||+|.||+++++|++++|+||+||+|||++++|+||||||||||||++|++++
T Consensus        82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~  161 (376)
T 4a69_A           82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH  161 (376)
T ss_dssp             HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred             hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence                  45788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHH
Q 017484          106 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS  185 (371)
Q Consensus       106 ~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~  185 (371)
                      +||||||||||||||||++||+|++|||+|||+++..||||||..+++|.++|++|++|||||+|++|++|+.+|+++|.
T Consensus       162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~  241 (376)
T 4a69_A          162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN  241 (376)
T ss_dssp             SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred             CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCCCC
Q 017484          186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPN  265 (371)
Q Consensus       186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~~~  265 (371)
                      |++++|+||+||+|||+|+|.+||||.|+||.+||++|+++++++++|+++++||||++++++|||+++|++|+|.+++.
T Consensus       242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~  321 (376)
T 4a69_A          242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE  321 (376)
T ss_dssp             HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhhCCCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHhhcCCCCCCcc
Q 017484          266 EIPENEYIKYFAPECSLRIP-NGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ  319 (371)
Q Consensus       266 ~iP~~~~~~~~~p~~~l~~~-~~~~~n~n~~~~l~~i~~~i~~~l~~l~~apsvq  319 (371)
                      ++|+++|++||+|+|+|+++ +++|+|+|+++|||+|+++|++|||+|+++||||
T Consensus       322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~  376 (376)
T 4a69_A          322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ  376 (376)
T ss_dssp             BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred             CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999998 8999999999999999999999999999999998
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 371
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 5e-75
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 8e-54
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 3e-35
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  234 bits (598), Expect = 5e-75
 Identities = 127/286 (44%), Positives = 189/286 (66%)

Query: 27  KPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEAS 86
                Y LG DCP  E +F++     G TI AA+ L + +C +AINW+GG HHAKK EAS
Sbjct: 78  PDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEAS 137

Query: 87  GFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPG 146
           GFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF   FFPG
Sbjct: 138 GFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPG 197

Query: 147 TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLA 206
           TGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V + + P A+VLQ GAD++A
Sbjct: 198 TGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIA 257

Query: 207 GDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNE 266
           GD +  FN++  G  +C++++ ++ L  L+ GGGGY   N ARCWT  TG++L   L +E
Sbjct: 258 GDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSE 317

Query: 267 IPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
           IP++E+   + P+  L I      + N    +  I   +  NL+ +
Sbjct: 318 IPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 363
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query371
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-93  Score=708.75  Aligned_cols=303  Identities=44%  Similarity=0.859  Sum_probs=295.8

Q ss_pred             EEEEcCCcccccCCCCCCCCchhh--------------------------------------------------------
Q 017484            8 SYFYDGDVGSVYFGPNHPMKPHRL--------------------------------------------------------   31 (371)
Q Consensus         8 ~y~~~~~~~~~~~g~~hP~~p~R~--------------------------------------------------------   31 (371)
                      .|+||+++.++  +..|||+|.|+                                                        
T Consensus         4 vyiy~~~~~~~--~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~~~~~   81 (364)
T d1t64a_           4 VYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI   81 (364)
T ss_dssp             EEECCHHHHHH--HTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCCTTTT
T ss_pred             eEEeCHHHhcc--CCCCCCCcHHHHHHHHHHHHcCCccCCEEeCCCCCCHHHHHHhCCHHHHHHHHHhhhccccccchhe
Confidence            68999999765  78899999998                                                        


Q ss_pred             -cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHhCCcEEE
Q 017484           32 -YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLY  110 (371)
Q Consensus        32 -~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~~RVli  110 (371)
                       |+++.|||+|+++|+++++++||++.|++.+.+|+.++|+||+||+|||++++|+|||||||+||||+++++..+||+|
T Consensus        82 ~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~i  161 (364)
T d1t64a_          82 EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILY  161 (364)
T ss_dssp             TTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEEE
T ss_pred             eecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccccccccHHHHHHHHHHhhhceEEE
Confidence             5778899999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             EeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHh
Q 017484          111 IDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVET  190 (371)
Q Consensus       111 iD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~  190 (371)
                      ||||||||||||++|+++++|+|+|||+++.+||||||..+++|.+.|++|++|||||+|++|++|+.+|+++|.|++++
T Consensus       162 iD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~~  241 (364)
T d1t64a_         162 VDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA  241 (364)
T ss_dssp             EECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCCceeeeeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeecccccChHHHHHHHHHhhHHHhhc
Confidence            99999999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCCCCCCCCc
Q 017484          191 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPEN  270 (371)
Q Consensus       191 f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~~~~iP~~  270 (371)
                      |+||+||+|||+|+|.+||||.|+||.+||++|+++|+++++|+++++||||++.+++|||+++|++|+|+++++++|+|
T Consensus       242 f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~~  321 (364)
T d1t64a_         242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDH  321 (364)
T ss_dssp             HCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCCC
T ss_pred             CCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCCccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 017484          271 EYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI  312 (371)
Q Consensus       271 ~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l  312 (371)
                      +||++|+|+|+|++.+++++|+|+.+||++|++.|.+|||++
T Consensus       322 ~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~  363 (364)
T d1t64a_         322 EFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV  363 (364)
T ss_dssp             TTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhcCCCcccccCcccccccCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999986
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure