Citrus Sinensis ID: 017532
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | 2.2.26 [Sep-21-2011] | |||||||
| Q8K2L8 | 797 | Trafficking protein parti | yes | no | 0.889 | 0.412 | 0.315 | 1e-30 | |
| Q8WVT3 | 735 | Trafficking protein parti | yes | no | 0.891 | 0.448 | 0.306 | 3e-30 | |
| P15705 | 589 | Heat shock protein STI1 O | yes | no | 0.443 | 0.278 | 0.252 | 0.0002 |
| >sp|Q8K2L8|TPC12_MOUSE Trafficking protein particle complex subunit 12 OS=Mus musculus GN=Trappc12 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 177/358 (49%), Gaps = 29/358 (8%)
Query: 35 LQDLATRGSWRTIIDNVSR---ARSQSLLTQ--PHHHLT---YLAYNTLALM-KLRRFDE 85
L+ L + +WR +D R A Q P H T L + LAL+ KL F
Sbjct: 446 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLWFVRLALLVKLGLFQN 505
Query: 86 AQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYE 145
A+ E + + + YE YPH+YP R GSMVPFS+R L+A L L N Q LDR +
Sbjct: 506 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHR 565
Query: 146 LLDFVREKLA---RKLAE----------KLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192
+ + LA + LAE + SV+ W+ R VL + L K+Y +
Sbjct: 566 VKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYVL 625
Query: 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252
D I +P L+S +G I +Q+GD++ A+K F VE++ + DGL ++
Sbjct: 626 AVDAYLTVIKYYPEQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI 682
Query: 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV 312
+V N+A +YL ++ A + + E + D + VA NN A+CL+YL L DS++
Sbjct: 683 ----MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQ 738
Query: 313 LENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
LE +++ P L+E+++ NL +MYEL K++L + D F++ C ++
Sbjct: 739 LEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLKL 796
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May be involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage. Mus musculus (taxid: 10090) |
| >sp|Q8WVT3|TPC12_HUMAN Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 177/359 (49%), Gaps = 29/359 (8%)
Query: 34 SLQDLATRGSWRTIIDNVSR---ARSQS-----LLTQPHHHLTYLAYNTLALM-KLRRFD 84
L+ L + +WR +D R A Q LLT L + LAL+ KL F
Sbjct: 383 GLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQ 442
Query: 85 EAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFY 144
A+ E + + + YE YPH+YP R GSMVPFS+R L+A L L N Q LDR +
Sbjct: 443 NAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 502
Query: 145 ELLDFVREKLA---RKLAE----------KLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191
++ + LA + LAE + S++ W+ R V+ + L K+Y
Sbjct: 503 KVKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYV 562
Query: 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251
+ + + I +P L+S +G I +Q+GD++ A+K F VE++ + DGL +
Sbjct: 563 LAVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK---LDGLQGK 619
Query: 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311
+ +V N A ++L ++ A R + E + D + VA NN A+CL+YL L DS++
Sbjct: 620 I----MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLR 675
Query: 312 VLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
LE +++ P L+E+++ NL +MYEL K+ L + D F++ C ++
Sbjct: 676 QLEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQALLEAVAGKEGDSFNTQCLKL 734
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May be involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage. Homo sapiens (taxid: 9606) |
| >sp|P15705|STI1_YEAST Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STI1 PE=1 SV=1 | Back alignment and function description |
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Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Query: 155 ARKLAEKLEESVKSWK-KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL--DPIL 211
AR+ E +E K+W+ ++I LN EY +N+++ +G + D +
Sbjct: 275 ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 334
Query: 212 VSK----LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL---------LSEVEFRNLV 258
+SK +G ++GDL KK+ ++ L E + D L L + E V
Sbjct: 335 ISKSFARIGNAYHKLGDL---KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV 391
Query: 259 SRNKA-------LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311
+ KA Y D+ +AV+ Y E I+R D +N+A L L ++I
Sbjct: 392 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 451
Query: 312 VLENALERVP 321
A+E+ P
Sbjct: 452 DCNKAIEKDP 461
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May play a role in mediating the heat shock response of some HSP70 genes. It is required for optimal growth of yeast cells at both low and high temperature. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | ||||||
| 255576160 | 370 | d-alanyl-d-alanine carboxypeptidase, put | 0.959 | 0.959 | 0.734 | 1e-149 | |
| 449451463 | 387 | PREDICTED: trafficking protein particle | 0.972 | 0.930 | 0.715 | 1e-147 | |
| 356540069 | 361 | PREDICTED: trafficking protein particle | 0.940 | 0.963 | 0.702 | 1e-142 | |
| 357463445 | 359 | Tetratricopeptide repeat protein [Medica | 0.937 | 0.966 | 0.704 | 1e-141 | |
| 3080451 | 427 | hypothetical protein [Arabidopsis thalia | 0.937 | 0.812 | 0.676 | 1e-141 | |
| 27754425 | 412 | unknown protein [Arabidopsis thaliana] | 0.937 | 0.842 | 0.676 | 1e-141 | |
| 42567541 | 408 | tetratricopeptide repeat domain-containi | 0.937 | 0.850 | 0.676 | 1e-141 | |
| 356567789 | 360 | PREDICTED: trafficking protein particle | 0.927 | 0.952 | 0.707 | 1e-140 | |
| 388497256 | 359 | unknown [Medicago truncatula] | 0.937 | 0.966 | 0.695 | 1e-140 | |
| 297802096 | 412 | binding protein [Arabidopsis lyrata subs | 0.937 | 0.842 | 0.667 | 1e-140 |
| >gi|255576160|ref|XP_002528974.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis] gi|223531564|gb|EEF33393.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/358 (73%), Positives = 304/358 (84%), Gaps = 3/358 (0%)
Query: 15 TDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNT 74
TDPL++ F SLNDL +LASLQDLATRGSWR+I+D V+RARS SLL PH HLTYLAYN
Sbjct: 14 TDPLSDQFTSLNDLAHELASLQDLATRGSWRSILDKVTRARSLSLLNTPHDHLTYLAYNV 73
Query: 75 LALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLS 134
LAL KLRRF +A ELDSL+DF+S Y Y+TYP IYPNR+GSMVPF LRWL+A++P+KL
Sbjct: 74 LALSKLRRFKDALTELDSLDDFDSHHYFYQTYPKIYPNRSGSMVPFCLRWLHALIPLKLG 133
Query: 135 NRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194
NRQ GLDRFY LLDFVREK+ K E + +VK W+KRE+FV+N +I HL +KE++VC
Sbjct: 134 NRQDGLDRFYLLLDFVREKVKVKKQEN-DVAVKMWRKREVFVMNGIITEHLKNKEFSVCL 192
Query: 195 DLMNESIGRGNG-LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE-DGLLSEV 252
L+N+ I G LDP+L+SKLG IQMQ+GDLEGAK SF+ VE++ NE + D LLSE+
Sbjct: 193 GLINDLISHSGGNLDPVLLSKLGHIQMQIGDLEGAKMSFDNVEKLFNERNVDGDELLSEI 252
Query: 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV 312
EFRNL++RNKAL+YLVGKDYVSAVREYEECIERD D+VAINNKALCLMYLRDLSDSIKV
Sbjct: 253 EFRNLINRNKALVYLVGKDYVSAVREYEECIERDATDVVAINNKALCLMYLRDLSDSIKV 312
Query: 313 LENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
LEN+LERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS+WI RVAPDDFDSSCTRI
Sbjct: 313 LENSLERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWISRVAPDDFDSSCTRI 370
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451463|ref|XP_004143481.1| PREDICTED: trafficking protein particle complex subunit 12-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/362 (71%), Positives = 307/362 (84%), Gaps = 2/362 (0%)
Query: 9 QNPSRFTDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLT 68
+N + +DPLT FGSLNDL DL SLQDLATRGSWR+I+D V+RAR+ +LL +PH HLT
Sbjct: 28 ENLAISSDPLTTQFGSLNDLAHDLFSLQDLATRGSWRSILDKVARARALTLLQKPHDHLT 87
Query: 69 YLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAV 128
YL+YN LAL+KLRRF EA ELDSLED NSS Y+YE+YP +YPNRTGSMVPFSLRWL A+
Sbjct: 88 YLSYNVLALVKLRRFAEALAELDSLEDLNSSQYRYESYPSVYPNRTGSMVPFSLRWLQAL 147
Query: 129 LPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188
+PIK+ RQ GLDRFYELLDFV+ KL K +KL+ SV WKKR +FV+NC+IG+HLS+K
Sbjct: 148 IPIKMGERQHGLDRFYELLDFVQSKLKDKEEKKLDVSVNLWKKRVVFVINCIIGHHLSNK 207
Query: 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248
E+ VC L+N + DP L+SKLG+IQM GD+EGAK+SFNR+EE++ EGK G
Sbjct: 208 EFGVCLTLINNLLSEDFS-DPALISKLGYIQMHAGDIEGAKRSFNRIEELVKEGK-SSGS 265
Query: 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308
LSEVE +NLV+RNKAL++LVGKDY+SAVREYEECIERD +D+VAINNKALCLMYLRDL+D
Sbjct: 266 LSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDMVAINNKALCLMYLRDLAD 325
Query: 309 SIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCT 368
SIKVLENALERVPTVALNET++VNLCSMYELAYVNHS+IKRTL++WI RVAPDDFDSS T
Sbjct: 326 SIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSST 385
Query: 369 RI 370
RI
Sbjct: 386 RI 387
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540069|ref|XP_003538513.1| PREDICTED: trafficking protein particle complex subunit 12-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/356 (70%), Positives = 297/356 (83%), Gaps = 8/356 (2%)
Query: 15 TDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNT 74
T PL++ ++D D++SL++LA+RG+WR+IID VSRAR+ SLL +PH HLTYLA+N
Sbjct: 12 THPLSD---QIDDACHDMSSLEELASRGAWRSIIDKVSRARALSLLHKPHDHLTYLAFNA 68
Query: 75 LALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLS 134
LA KLRRF+EA ELDSLED +SS Y+YETYP IYPNR GSMVPFSLRW++A++PIKL
Sbjct: 69 LAFTKLRRFNEASAELDSLEDLHSSHYRYETYPKIYPNRIGSMVPFSLRWVHALIPIKLG 128
Query: 135 NRQVGLDRFYELLDFVREKLARKLAEK-LEESVKSWKKREIFVLNCLIGYHLSSKEYNVC 193
RQ G+DRFY LLDFVR K+ K + L S+ W+KRE+FV+NC+IG HLS KE+ VC
Sbjct: 129 QRQQGMDRFYILLDFVRGKINEKEKQNNLGVSLNLWRKREVFVVNCIIGNHLSQKEFGVC 188
Query: 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253
LM E + R DP+LVS+LG++Q+Q+GDLEGAK SF +VEE+ GK +G LSEVE
Sbjct: 189 LSLMKELLSRDCS-DPLLVSQLGYMQLQIGDLEGAKISFLKVEEL---GKSNNGSLSEVE 244
Query: 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313
FRNLV+RNKAL+YLVGKDYVSAVREYEECIERD D+VA+NNKALCLMYLRDLSDSIKVL
Sbjct: 245 FRNLVNRNKALVYLVGKDYVSAVREYEECIERDSADVVAVNNKALCLMYLRDLSDSIKVL 304
Query: 314 ENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTR 369
E+ALERVPTVALNETLVVNLCSMYELAYVNHSD+KRTLSSWI RVAPDDFD+SCTR
Sbjct: 305 ESALERVPTVALNETLVVNLCSMYELAYVNHSDVKRTLSSWIARVAPDDFDASCTR 360
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463445|ref|XP_003602004.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355491052|gb|AES72255.1| Tetratricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/355 (70%), Positives = 292/355 (82%), Gaps = 8/355 (2%)
Query: 15 TDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNT 74
TDPL N L++L DL SLQDLA RG+WR+IID V+RAR+ SLL +PH HLTYLA+N
Sbjct: 12 TDPLINP---LDELCHDLHSLQDLANRGAWRSIIDKVARARALSLLQKPHDHLTYLAFNA 68
Query: 75 LALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLS 134
LA KLRRF+EA ELDS+ED +SS Y+YETYP +YPNR GSMVPFSLRWL+A++PIKL
Sbjct: 69 LAFTKLRRFNEASSELDSVEDLDSSHYRYETYPKVYPNRVGSMVPFSLRWLHALIPIKLG 128
Query: 135 NRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194
RQ G+DR Y LLDFVREK+ K + L SV+ W+KRE+FV+NC+IG+HLS KE+ VC
Sbjct: 129 QRQQGIDRLYNLLDFVREKIRIKEDDNLSASVRVWRKREVFVVNCIIGHHLSHKEFGVCL 188
Query: 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254
L+ I R + DP L+S+LG+IQ+Q GDLEGAK SF + E +GK G LSEVEF
Sbjct: 189 SLIKTLISR-DPEDPFLISQLGYIQLQTGDLEGAKDSFLKAE---GDGK-NHGSLSEVEF 243
Query: 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314
+NL +RNKALIY+VGKDYVSAVREY+ CIERD++DIVA NNKALCLMYLRDLSDSIKVLE
Sbjct: 244 KNLANRNKALIYMVGKDYVSAVREYDVCIERDHSDIVAFNNKALCLMYLRDLSDSIKVLE 303
Query: 315 NALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTR 369
NALERVPTVALNET+VVNLCSMYELAYVNHSDIKRTLSSWI RVAPDDFDS+CTR
Sbjct: 304 NALERVPTVALNETIVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDSTCTR 358
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3080451|emb|CAA18768.1| hypothetical protein [Arabidopsis thaliana] gi|7270966|emb|CAB80645.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/349 (67%), Positives = 294/349 (84%), Gaps = 2/349 (0%)
Query: 22 FGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR 81
F SL++L DL SL +L+TRGSW+ I++ +S+AR+ LLT+PH HLTYL Y +AL KLR
Sbjct: 81 FNSLDELTHDLGSLHELSTRGSWQAILEKISQARALFLLTKPHEHLTYLTYQVMALAKLR 140
Query: 82 RFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141
R DEA EL+SL DF+ + Y+YE++P IYPNR GSMVPFSLRWLYA++P KL NRQ GLD
Sbjct: 141 RSDEASHELNSLHDFDGTHYRYESFPEIYPNRRGSMVPFSLRWLYALIPTKLGNRQEGLD 200
Query: 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESI 201
R Y LLDFVR+++ K ++ LE SV+ WKKRE FV+NCL+G+HL KE+ V DLM E I
Sbjct: 201 RLYVLLDFVRDRIREKESQSLESSVELWKKRETFVMNCLLGFHLGHKEFGVSLDLMKELI 260
Query: 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261
R + LDP+L+SKLG +QMQ GD+EGAK +F+RVE+MLNEGK +GLL+E++F NLV RN
Sbjct: 261 NR-DPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGK-SNGLLNEIQFNNLVGRN 318
Query: 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
KAL+Y+V KDYVSAVREY++CIERD +DI+A+NNKALCLMYLRDLSD+IKV+E+ALERVP
Sbjct: 319 KALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAIKVMESALERVP 378
Query: 322 TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
T ALNE+LVVNLCSMYELAYVNH+D+KRTL++WI RVAPDDFDSSCTR+
Sbjct: 379 TAALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTRV 427
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|27754425|gb|AAO22661.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/349 (67%), Positives = 294/349 (84%), Gaps = 2/349 (0%)
Query: 22 FGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR 81
F SL++L DL SL +L+TRGSW+ I++ +S+AR+ LLT+PH HLTYL Y +AL KLR
Sbjct: 66 FNSLDELTHDLGSLHELSTRGSWQAILEKISQARALFLLTKPHEHLTYLTYQVMALAKLR 125
Query: 82 RFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141
R DEA EL+SL DF+ + Y+YE++P IYPNR GSMVPFSLRWLYA++P KL NRQ GLD
Sbjct: 126 RSDEASHELNSLHDFDGTHYRYESFPEIYPNRRGSMVPFSLRWLYALIPTKLGNRQEGLD 185
Query: 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESI 201
R Y LLDFVR+++ K ++ LE SV+ WKKRE FV+NCL+G+HL KE+ V DLM E I
Sbjct: 186 RLYVLLDFVRDRIREKESQSLESSVELWKKRETFVMNCLLGFHLGHKEFGVSLDLMKELI 245
Query: 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261
R + LDP+L+SKLG +QMQ GD+EGAK +F+RVE+MLNEGK +GLL+E++F NLV RN
Sbjct: 246 NR-DPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGK-SNGLLNEIQFNNLVGRN 303
Query: 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
KAL+Y+V KDYVSAVREY++CIERD +DI+A+NNKALCLMYLRDLSD+IKV+E+ALERVP
Sbjct: 304 KALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAIKVMESALERVP 363
Query: 322 TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
T ALNE+LVVNLCSMYELAYVNH+D+KRTL++WI RVAPDDFDSSCTR+
Sbjct: 364 TAALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTRV 412
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567541|ref|NP_195692.2| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|53749172|gb|AAU90071.1| At4g39820 [Arabidopsis thaliana] gi|332661723|gb|AEE87123.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/349 (67%), Positives = 294/349 (84%), Gaps = 2/349 (0%)
Query: 22 FGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR 81
F SL++L DL SL +L+TRGSW+ I++ +S+AR+ LLT+PH HLTYL Y +AL KLR
Sbjct: 62 FNSLDELTHDLGSLHELSTRGSWQAILEKISQARALFLLTKPHEHLTYLTYQVMALAKLR 121
Query: 82 RFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141
R DEA EL+SL DF+ + Y+YE++P IYPNR GSMVPFSLRWLYA++P KL NRQ GLD
Sbjct: 122 RSDEASHELNSLHDFDGTHYRYESFPEIYPNRRGSMVPFSLRWLYALIPTKLGNRQEGLD 181
Query: 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESI 201
R Y LLDFVR+++ K ++ LE SV+ WKKRE FV+NCL+G+HL KE+ V DLM E I
Sbjct: 182 RLYVLLDFVRDRIREKESQSLESSVELWKKRETFVMNCLLGFHLGHKEFGVSLDLMKELI 241
Query: 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261
R + LDP+L+SKLG +QMQ GD+EGAK +F+RVE+MLNEGK +GLL+E++F NLV RN
Sbjct: 242 NR-DPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGK-SNGLLNEIQFNNLVGRN 299
Query: 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
KAL+Y+V KDYVSAVREY++CIERD +DI+A+NNKALCLMYLRDLSD+IKV+E+ALERVP
Sbjct: 300 KALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAIKVMESALERVP 359
Query: 322 TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
T ALNE+LVVNLCSMYELAYVNH+D+KRTL++WI RVAPDDFDSSCTR+
Sbjct: 360 TAALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTRV 408
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567789|ref|XP_003552098.1| PREDICTED: trafficking protein particle complex subunit 12-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/356 (70%), Positives = 296/356 (83%), Gaps = 13/356 (3%)
Query: 17 PLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLA 76
PL+N ++D D++SL++LA RG+WR+IID VSRAR+ SLL +PH HLTYLA+N L+
Sbjct: 14 PLSNP---IDDACHDMSSLEELANRGAWRSIIDKVSRARALSLLHKPHDHLTYLAFNALS 70
Query: 77 LMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNR 136
KLRRF+EA ELDSLED +SS Y+YETYP IYPNR GSMVPFSLRWL+A++PIKL R
Sbjct: 71 FTKLRRFNEASAELDSLEDLDSSHYRYETYPKIYPNRIGSMVPFSLRWLHALIPIKLGQR 130
Query: 137 QVGLDRFYELLDFVREKLARKLAEKLEE---SVKSWKKREIFVLNCLIGYHLSSKEYNVC 193
Q G+DRFY LLDFVR K+ K EKL S+ W+KRE+FV+NC+IG HLS KE+ VC
Sbjct: 131 QQGMDRFYILLDFVRGKIKEK--EKLSNLGVSLNLWRKREVFVVNCIIGNHLSQKEFGVC 188
Query: 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253
LM E + R DP+LVS+LG++Q+Q+GDLEGAK SF +VEE+ GK +G LSEVE
Sbjct: 189 LSLMKELLSRDCS-DPLLVSQLGYMQLQIGDLEGAKVSFLKVEEL---GK-SNGSLSEVE 243
Query: 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313
FRNLV+RNKAL+YLVGKDYVSAVREYEECIERD D+VA+NNKALCLMYLRDLSDSIKVL
Sbjct: 244 FRNLVNRNKALVYLVGKDYVSAVREYEECIERDSADVVAVNNKALCLMYLRDLSDSIKVL 303
Query: 314 ENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTR 369
E+ALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS+WI RVAPDDFD+SCTR
Sbjct: 304 ESALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDASCTR 359
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497256|gb|AFK36694.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/355 (69%), Positives = 291/355 (81%), Gaps = 8/355 (2%)
Query: 15 TDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNT 74
TDPL N L++L DL SLQDLA RG+WR+IID V+RAR+ SLL +PH HLTYLA+N
Sbjct: 12 TDPLINP---LDELCHDLHSLQDLANRGAWRSIIDKVARARALSLLQKPHDHLTYLAFNA 68
Query: 75 LALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLS 134
LA KLRRF+EA ELDS+ED +SS Y+YETYP ++PNR GS+VPFSLRWL+A++PIKL
Sbjct: 69 LAFTKLRRFNEASSELDSVEDLDSSHYRYETYPKVHPNRVGSIVPFSLRWLHALIPIKLG 128
Query: 135 NRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194
RQ G+DR Y LLDFVREK+ K + L SV+ W+KRE+FV+NC+IG+HLS KE+ VC
Sbjct: 129 QRQQGIDRLYNLLDFVREKIRIKEDDNLSASVRVWRKREVFVVNCIIGHHLSHKEFGVCL 188
Query: 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254
L+ I R + DP L+S+LG+IQ+Q GDLEGAK SF + E +GK G LSEVEF
Sbjct: 189 SLIKTLISR-DPEDPFLISQLGYIQLQTGDLEGAKDSFLKAE---GDGK-NHGSLSEVEF 243
Query: 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314
+NL +RNKALIY+VGKDYVSAVREY+ CIERD++DI A NNKALCLMYLRDLSDSIKVLE
Sbjct: 244 KNLANRNKALIYMVGKDYVSAVREYDVCIERDHSDIAAFNNKALCLMYLRDLSDSIKVLE 303
Query: 315 NALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTR 369
NALERVPTVALNET+VVNLCSMYELAYVNHSDIKRTLSSWI RVAPDDFDS+CTR
Sbjct: 304 NALERVPTVALNETIVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDSTCTR 358
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802096|ref|XP_002868932.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297314768|gb|EFH45191.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/349 (66%), Positives = 294/349 (84%), Gaps = 2/349 (0%)
Query: 22 FGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR 81
F SL++L DL SL +L+T GSW+ I++ +S+AR+ LLT+PH HLTYL Y +AL KLR
Sbjct: 66 FNSLDELTHDLGSLHELSTLGSWQAILEKISQARALFLLTKPHEHLTYLTYQVMALAKLR 125
Query: 82 RFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141
R DEA EL+SL DF+ + Y+YE++P IYPNR GSMVPFSLRWLYA++P KL NRQ GLD
Sbjct: 126 RSDEAAHELNSLHDFDGTHYRYESFPEIYPNRRGSMVPFSLRWLYALIPTKLGNRQEGLD 185
Query: 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESI 201
R Y LLDFVR+++ K ++ L+ SV+ WKKRE FV+NCL+G+HL KE+ V DLM E I
Sbjct: 186 RLYVLLDFVRDRIREKESQSLDGSVELWKKRETFVMNCLLGFHLGHKEFGVSLDLMKELI 245
Query: 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261
R + LDP+L+SKLG +QMQ GD+EGAK +F+RVE+MLNEGK +GLL+E++F+NLV RN
Sbjct: 246 TR-DPLDPVLISKLGSVQMQFGDIEGAKTTFDRVEKMLNEGK-SNGLLNEIQFKNLVGRN 303
Query: 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
KAL+++V KDYVSAVREY++CIERD +DI+A+NNKALCLMYLRDLSD+IKV+E+ALERVP
Sbjct: 304 KALVHVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAIKVMESALERVP 363
Query: 322 TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
T ALNE+LVVNLCSMYELAYVNH+D+KRTL++WI RVAPDDFDSSCTR+
Sbjct: 364 TAALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTRV 412
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | ||||||
| TAIR|locus:2135227 | 408 | AT4G39820 [Arabidopsis thalian | 0.937 | 0.850 | 0.676 | 3.5e-130 | |
| MGI|MGI:2445089 | 797 | Trappc12 "trafficking protein | 0.889 | 0.412 | 0.315 | 3.2e-33 | |
| UNIPROTKB|Q8WVT3 | 735 | TRAPPC12 "Trafficking protein | 0.889 | 0.447 | 0.310 | 8.7e-33 | |
| ZFIN|ZDB-GENE-070112-1282 | 760 | trappc12 "trafficking protein | 0.916 | 0.446 | 0.299 | 1.3e-29 | |
| DICTYBASE|DDB_G0281351 | 602 | DDB_G0281351 [Dictyostelium di | 0.418 | 0.257 | 0.260 | 6.3e-29 |
| TAIR|locus:2135227 AT4G39820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
Identities = 236/349 (67%), Positives = 294/349 (84%)
Query: 22 FGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR 81
F SL++L DL SL +L+TRGSW+ I++ +S+AR+ LLT+PH HLTYL Y +AL KLR
Sbjct: 62 FNSLDELTHDLGSLHELSTRGSWQAILEKISQARALFLLTKPHEHLTYLTYQVMALAKLR 121
Query: 82 RFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141
R DEA EL+SL DF+ + Y+YE++P IYPNR GSMVPFSLRWLYA++P KL NRQ GLD
Sbjct: 122 RSDEASHELNSLHDFDGTHYRYESFPEIYPNRRGSMVPFSLRWLYALIPTKLGNRQEGLD 181
Query: 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESI 201
R Y LLDFVR+++ K ++ LE SV+ WKKRE FV+NCL+G+HL KE+ V DLM E I
Sbjct: 182 RLYVLLDFVRDRIREKESQSLESSVELWKKRETFVMNCLLGFHLGHKEFGVSLDLMKELI 241
Query: 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261
R + LDP+L+SKLG +QMQ GD+EGAK +F+RVE+MLNEGK +GLL+E++F NLV RN
Sbjct: 242 NR-DPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGK-SNGLLNEIQFNNLVGRN 299
Query: 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
KAL+Y+V KDYVSAVREY++CIERD +DI+A+NNKALCLMYLRDLSD+IKV+E+ALERVP
Sbjct: 300 KALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSDAIKVMESALERVP 359
Query: 322 TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
T ALNE+LVVNLCSMYELAYVNH+D+KRTL++WI RVAPDDFDSSCTR+
Sbjct: 360 TAALNESLVVNLCSMYELAYVNHTDVKRTLNNWIARVAPDDFDSSCTRV 408
|
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| MGI|MGI:2445089 Trappc12 "trafficking protein particle complex 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 113/358 (31%), Positives = 177/358 (49%)
Query: 35 LQDLATRGSWRTIIDNVSR---ARSQSLLTQ--PHHHLT---YLAYNTLALM-KLRRFDE 85
L+ L + +WR +D R A Q P H T L + LAL+ KL F
Sbjct: 446 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLWFVRLALLVKLGLFQN 505
Query: 86 AQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYE 145
A+ E + + + YE YPH+YP R GSMVPFS+R L+A L L N Q LDR +
Sbjct: 506 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHR 565
Query: 146 LLDFVREKLA---RKLAE----------KLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192
+ + LA + LAE + SV+ W+ R VL + L K+Y +
Sbjct: 566 VKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYVL 625
Query: 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252
D I +P L+S +G I +Q+GD++ A+K F VE++ + DGL ++
Sbjct: 626 AVDAYLTVIKYYPEQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI 682
Query: 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV 312
+V N+A +YL ++ A + + E + D + VA NN A+CL+YL L DS++
Sbjct: 683 ----MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQ 738
Query: 313 LENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
LE +++ P L+E+++ NL +MYEL K++L + D F++ C ++
Sbjct: 739 LEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLKL 796
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| UNIPROTKB|Q8WVT3 TRAPPC12 "Trafficking protein particle complex subunit 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 8.7e-33, P = 8.7e-33
Identities = 111/358 (31%), Positives = 178/358 (49%)
Query: 35 LQDLATRGSWRTIIDNVSR---ARSQS-----LLTQPHHHLTYLAYNTLALM-KLRRFDE 85
L+ L + +WR +D R A Q LLT L + LAL+ KL F
Sbjct: 384 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQN 443
Query: 86 AQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYE 145
A+ E + + + YE YPH+YP R GSMVPFS+R L+A L L N Q LDR ++
Sbjct: 444 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 503
Query: 146 LLDFVREKLA---RKLAEK------LEE----SVKSWKKREIFVLNCLIGYHLSSKEYNV 192
+ + LA + LAE +E S++ W+ R V+ + L K+Y +
Sbjct: 504 VKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVL 563
Query: 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252
+ + I +P L+S +G I +Q+GD++ A+K F VE++ + DGL ++
Sbjct: 564 AVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI 620
Query: 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV 312
+V N A ++L ++ A R + E + D + VA NN A+CL+YL L DS++
Sbjct: 621 ----MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQ 676
Query: 313 LENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
LE +++ P L+E+++ NL +MYEL K+ L + D F++ C ++
Sbjct: 677 LEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQALLEAVAGKEGDSFNTQCLKL 734
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| ZFIN|ZDB-GENE-070112-1282 trappc12 "trafficking protein particle complex 12" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 111/371 (29%), Positives = 171/371 (46%)
Query: 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSR---ARSQSLLTQPHH--HLT---YLAYNTL 75
S N + + L+ L + +WR +D R A Q H H T L + L
Sbjct: 397 SANSVEQNFLGLKRLISTKNWRAAVDLTGRLLTAHGQGYGKSGQHTTHTTDSLQLWFVRL 456
Query: 76 AL-MKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLS 134
+L MKL F A+ EL+ D + YE YP +YP R GSMVPFS+R L+A LP L
Sbjct: 457 SLLMKLSLFQNAELELEPFGDLDHPNLYYEYYPAVYPGRRGSMVPFSMRLLHAELPQYLQ 516
Query: 135 NRQVGLDRFYELLDFVREKLARKLAEKLEE--------------SVKSWKKREIFVLNCL 180
Q LDR + + V +K+ L E L E S++ W+ R ++ +
Sbjct: 517 KPQETLDRLHRIKS-VCQKILSNLQEGLAEDGSMVNLTQENRLASLELWRSRLSRLMYSM 575
Query: 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML- 239
L K+Y + + I L+S +G I +Q+GD+ A+K F VE
Sbjct: 576 ANCLLMMKDYVLAVETYRSIIEFEPEQKVQLLSGIGRIFLQIGDIRTAEKYFQDVENACQ 635
Query: 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299
++GK + E V N+A +YL +Y A + + D + VA NN A+C
Sbjct: 636 SKGK------TATE-ETSVLMNRAFVYLSQNNYADAHTCFSSVLRLDPKNPVANNNAAVC 688
Query: 300 LMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359
L+YL L +S+ LE+ + + P + L+E+++ NL +MYEL + K+ L
Sbjct: 689 LLYLGRLKESLGQLESLVHKDPALYLHESVLFNLTTMYELESSRSTQKKQALLEAAACRE 748
Query: 360 PDDFDSSCTRI 370
D F+ C ++
Sbjct: 749 GDSFNIQCLKL 759
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| DICTYBASE|DDB_G0281351 DDB_G0281351 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 6.3e-29, Sum P(3) = 6.3e-29
Identities = 43/165 (26%), Positives = 92/165 (55%)
Query: 160 EKLEESVKSWKKREIFVLNCLIGYHLS-SKEYNVCFDLMNESIGRGNGLDPILVSKLGFI 218
+ L E + W++RE ++ ++ + + ++++ + ++ + I + D ++S LG I
Sbjct: 365 QSLLELLSLWRERERRIIFSIVTFIIQKNRDFLLAIKILEDLIQKFEA-DIYILSALGRI 423
Query: 219 QMQVGDLEGAKKSFNRVE----EMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD-YV 273
+Q+G+L+GA+K F V+ +N+ + L + ++ +L++ Y + D Y
Sbjct: 424 HLQMGNLKGAEKIFKFVDIIIKNTINDNNNNNNLNNSLKILSLMNHG---FYSIASDQYP 480
Query: 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
SA++ +E+ I+ + N+I AINNK + ++Y DL +I LE L+
Sbjct: 481 SAIKYFEDVIQIEPNNIAAINNKCISMLYTCDLGGAITELEGVLQ 525
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT4G39820 | binding; binding; FUNCTIONS IN- binding; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide region (InterPro-IPR013026); Has 225 Blast hits to 221 proteins in 90 species- Archae - 2; Bacteria - 18; Metazoa - 104; Fungi - 15; Plants - 24; Viruses - 0; Other Eukaryotes - 62 (source- NCBI BLink). (408 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AHK2 | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase [...] (1176 aa) | • | 0.736 | |||||||
 | ATNAC3 | ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3); protein heterodimerization/ transcription [...] (318 aa) | • | 0.479 | |||||||
 | TRFL5 | TRFL5 (TRF-LIKE 5); DNA binding / transcription factor; Arabidopsis thaliana myb family transcr [...] (390 aa) | • | 0.479 | |||||||
 | AT5G02150 | binding; binding; FUNCTIONS IN- binding; LOCATED IN- cellular_component unknown; EXPRESSED IN- [...] (324 aa) | • | 0.462 | |||||||
 | HSP23.6 | ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6); AtHSP23.6-mito mRNA, nu [...] (210 aa) | • | 0.462 | |||||||
 | AT3G54390 | transcription factor; transcription factor; FUNCTIONS IN- transcription factor activity; INVOLV [...] (296 aa) | • | 0.462 | |||||||
 | LSU1 | LSU1 (RESPONSE TO LOW SULFUR 1); RESPONSE TO LOW SULFUR 1 (LSU1); FUNCTIONS IN- molecular_funct [...] (94 aa) | • | 0.462 | |||||||
 | HUB1 | HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-pro [...] (878 aa) | • | 0.462 | |||||||
 | GAMMA_CA2 | GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase; Encodes mitochondrial gamma carb [...] (278 aa) | • | 0.462 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 370 | |||
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 9e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-05 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-06
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL-RDLSDSIKVLENALE 318
+N DY A+ YE+ +E D ++ A N AL + L +D ++++ LE ALE
Sbjct: 7 KNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALE 66
Query: 319 RVP 321
P
Sbjct: 67 LDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273
LG + ++GD + A + + + E+ + D N A Y Y
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYY-----------NLAAAYYKLGKYE 51
Query: 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
A+ +YE+ +E D ++ A N L L ++++ E ALE
Sbjct: 52 EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N +Y DY A+ YE+ +E D ++ A N A L ++++ E ALE
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 321 PTVALNETLVVNLCSMYEL 339
P N NL Y
Sbjct: 65 PD---NAKAYYNLGLAYYK 80
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.82 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.8 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.79 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.79 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.72 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.72 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.71 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.71 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.66 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.66 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.66 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.65 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.62 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.59 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.59 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.58 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.58 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.56 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.54 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.52 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.51 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.44 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.43 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.42 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.4 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.39 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.33 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.32 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.3 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.28 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.27 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.27 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.26 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.25 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.21 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.17 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.16 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.15 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.06 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.03 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.03 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.01 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.01 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.96 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.94 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.92 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.89 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.82 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.8 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.8 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.79 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.79 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.78 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.75 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.73 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.71 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.71 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.71 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.7 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.59 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.58 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.52 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.51 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.48 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.43 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.42 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.3 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.29 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.28 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.27 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.16 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.16 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 98.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.04 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.01 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.0 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.99 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.99 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.96 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.94 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.86 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.86 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.8 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.8 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.79 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.68 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.67 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.64 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.63 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.61 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.61 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.56 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.49 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.43 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.4 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.38 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.32 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.14 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.12 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.06 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 97.05 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.03 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.0 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.97 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.96 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.96 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.93 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.72 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.71 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.62 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.49 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.49 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.41 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.41 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.41 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.4 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.28 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.28 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.26 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.23 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.22 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.19 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.18 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.17 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.17 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.14 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.01 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.01 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.96 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.88 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.76 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 95.74 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.71 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.69 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.67 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.62 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.58 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.49 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.42 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.24 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.02 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.79 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.74 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.71 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 94.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.43 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 94.4 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.39 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.36 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 94.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 94.08 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.02 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.83 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.75 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.74 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 93.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.44 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 93.36 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.16 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.0 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 92.58 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 92.47 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 92.42 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.28 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.27 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.09 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 92.06 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 91.98 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 91.93 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.67 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.67 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.58 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.57 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 91.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 91.56 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 91.51 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 91.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.31 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.14 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 91.1 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 91.08 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 90.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.55 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 90.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 90.37 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 90.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 90.12 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 90.1 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 89.73 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 89.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 89.36 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.27 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.45 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.4 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 88.19 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 88.16 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 88.02 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.76 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 87.68 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.42 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 87.25 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 86.54 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 86.29 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 86.22 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 86.21 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 85.93 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.82 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 85.63 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.61 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.58 | |
| KOG2168 | 835 | consensus Cullins [Cell cycle control, cell divisi | 85.16 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.71 | |
| PF06957 | 422 | COPI_C: Coatomer (COPI) alpha subunit C-terminus; | 83.88 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 83.61 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.5 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 83.28 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 83.26 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 82.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.51 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 82.11 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 82.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 81.58 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 81.05 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.17 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 80.03 |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=332.46 Aligned_cols=340 Identities=33% Similarity=0.506 Sum_probs=309.8
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHh---hhcc------ccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRA---RSQS------LLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLE 94 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~---~~~~------~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~ 94 (370)
+.+.+|..+.++.+|+....|..++.++.+. .+++ +...|.+.++.|+++..++.+++++++|..++..++
T Consensus 17 ~ad~~~~~f~~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~ 96 (366)
T KOG2796|consen 17 NADSVEQSFVGLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWTVRLALLVKLRLFQNAEMELEPFG 96 (366)
T ss_pred ccCCchhhhhhHHHHHHhhhhHHHHhhhHHHHHHHhhhhhhhheeeccchhHHHHHHHHHHHHHHHhhhHHHHhhhhhhc
Confidence 5566778999999999999999999888773 2222 346788889999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHh-hHHhHHHHHHHH
Q 017532 95 DFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEK-LEESVKSWKKRE 173 (370)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (370)
++|.|++||+++|++||++.|||+||++|+++|+++.++|++++.+++++.+...+++++.....+. .+..+++|++|+
T Consensus 97 ~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl 176 (366)
T KOG2796|consen 97 NLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRL 176 (366)
T ss_pred cCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987765543 367899999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+.+.++.++...|+|.-....++++++.+|..++.+...||++.++.||.+.|..+|+++.+....- .+-.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-------~~~q 249 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-------DGLQ 249 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-------hccc
Confidence 999999999999999999999999999999965899999999999999999999999999877543321 1112
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
+...+..+.+.++.-+++|.+|...|.+.+..||.++.+.||.|.|++++|+..+|++.++.+++..|..+.++++++||
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 22567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCCCCCccccC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~~~~~ 370 (370)
+++|||+..+..+.|+.+..||+++.||+|+.+|+|+
T Consensus 330 ~tmyEL~Ys~~~~~k~~l~~~ia~~~~d~f~~~c~~~ 366 (366)
T KOG2796|consen 330 TTMYELEYSRSMQKKQALLEAVAGKEGDSFNTQCLKL 366 (366)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhccCCCcccchhhcC
Confidence 9999999999999999999999999999999999996
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=185.11 Aligned_cols=303 Identities=15% Similarity=0.041 Sum_probs=208.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC--CCCcccccCCC-CC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS--SGYQYETYPHI-YP 111 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~--~~~~~~~~~~~-~~ 111 (370)
...+-..|+..+|...|-+++.. .|.= ...|+..+..+...|...+|+..+.+...+++ ++.|+...... ..
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~----qp~f-AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIET----QPCF-AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA 265 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhh----CCce-eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH
Confidence 33444577777777777776433 3531 22234335556667777777777777776665 33333321100 00
Q ss_pred CCCCcccchhHHHH------------HHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhHhhHHhHHHHHH
Q 017532 112 NRTGSMVPFSLRWL------------YAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAEKLEESVKSWKK 171 (370)
Q Consensus 112 ~~~~~~~~~~~r~l------------~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~~~~~~~~~~~~ 171 (370)
......+.-++|.+ .+-+++..|..+.|++.+...++..+.... ....+...+++..+..
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 00001111122222 123356788899999998887654322211 1123445566666666
Q ss_pred HH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 172 RE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 172 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.+ +..+++||+++.++|.+++|..+|..+++..| ....+.++||.+|-++|++++|+.+|+.+++
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-------- 416 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALR-------- 416 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--------
Confidence 55 77888999999999999999999999999999 8888899999999999999999999999995
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
+.|.+ ++++.|+|.+|-.+|+.+.|+.+|.++|..+|....+++|+|.++...|+..+||..|+.++.++|++
T Consensus 417 ----I~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf-- 489 (966)
T KOG4626|consen 417 ----IKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF-- 489 (966)
T ss_pred ----cCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC--
Confidence 46677 88899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhccCC-ch-hhHHHHHHHHhhhC
Q 017532 326 NETLVVNLCSMYELAYVN-HS-DIKRTLSSWIGRVA 359 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~-~~-~~~~~ll~~~~~~~ 359 (370)
.....|+.......-+. +. +.-.++.+.++++.
T Consensus 490 -pdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 490 -PDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL 524 (966)
T ss_pred -chhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 77788887666543332 21 22334444455544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-20 Score=184.03 Aligned_cols=284 Identities=13% Similarity=0.099 Sum_probs=211.2
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
....+.+.|+|++|++.|++++.. .|. ...+..++.++.++|++++|+..++.+..+++...
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~----~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~------------ 194 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC----KPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS------------ 194 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----CCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH------------
Confidence 456788999999999999998654 465 23455568999999999999999999987764211
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH-----------------------HHHHHHH--------------
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF-----------------------VREKLAR-------------- 156 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~-----------------------~~~~~~~-------------- 156 (370)
....+ .+.++..+|++++|+..+..+... ....+..
T Consensus 195 -----~a~~~--~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 195 -----KALNR--RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred -----HHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 01111 233345566666665544222100 0000000
Q ss_pred -------------------------------------HhhHhhHHhHHHHHHH---------HHHHHHHHHHHHHhcCCH
Q 017532 157 -------------------------------------KLAEKLEESVKSWKKR---------EIFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 157 -------------------------------------~~~~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~ 190 (370)
...+...++.+.+... ...+++.+|.++..+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 0001122333333322 245688999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++|+..|++++..+| .....+..+|.++...|++++|+.+|++++++.++ . ..++.++|.+++..|
T Consensus 348 ~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------~-~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 348 LEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE------------D-PDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------C-HHHHHHHHHHHHHcC
Confidence 999999999999999 99999999999999999999999999999975433 2 556888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHH
Q 017532 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRT 350 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ 350 (370)
++++|+..|+++++++|++..++.++|.++...|++++|+..|++++...|+. ..++.+++.+|.- .+..+...+
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~--~g~~~~A~~ 488 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA---PDVYNYYGELLLD--QNKFDEAIE 488 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH--ccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 7788888888863 344566666
Q ss_pred HHHHHhhhCCC
Q 017532 351 LSSWIGRVAPD 361 (370)
Q Consensus 351 ll~~~~~~~~d 361 (370)
..+......|+
T Consensus 489 ~~~~Al~l~p~ 499 (615)
T TIGR00990 489 KFDTAIELEKE 499 (615)
T ss_pred HHHHHHhcCCc
Confidence 66655544443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=184.28 Aligned_cols=262 Identities=16% Similarity=0.124 Sum_probs=188.0
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCC-CcccccCCCCCCCCC
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSG-YQYETYPHIYPNRTG 115 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 115 (370)
.+-.+|+...||..|+++. ..+|+-...+++ .+..|-.++.|+.|...+.+...+.+-. ..+.....+|-..+.
T Consensus 227 ~f~~~Gei~~aiq~y~eAv----kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAV----KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred HHhhcchHHHHHHHHHHhh----cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecccc
Confidence 4556777777777777753 345663333333 3666777777777777777666555311 011111111100000
Q ss_pred --cc-------------cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--------hhHhhHHhHHHHHHH
Q 017532 116 --SM-------------VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--------LAEKLEESVKSWKKR 172 (370)
Q Consensus 116 --~~-------------~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------~~~~~~~~~~~~~~~ 172 (370)
-. .|.....+ +-.....|+..+|++.+...+..|....... +....+++..+++..
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~Nl-anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNL-ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHH-HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 00 11111112 2223567999999999999887766544321 233445667777766
Q ss_pred H------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 173 E------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 173 ~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
+ +.++++||.+|-++|++++|+..|++++++.| ...++++++|..|-.+|+.+.|+++|.+|+
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---------- 449 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-TFADALSNMGNTYKEMGDVSAAIQCYTRAI---------- 449 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-hHHHHHHhcchHHHHhhhHHHHHHHHHHHH----------
Confidence 5 78899999999999999999999999999999 999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR---DLSDSIKVLENALE 318 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g---~~~~A~~~l~~al~ 318 (370)
..+|.+ ++++.|+|.+|-..|...+||..|+.++.++|+.+.++.|++-|+-.-. ++++-++-+.++++
T Consensus 450 --~~nPt~-AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivr 521 (966)
T KOG4626|consen 450 --QINPTF-AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVR 521 (966)
T ss_pred --hcCcHH-HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 568888 9999999999999999999999999999999999999999998886654 45555554444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=179.19 Aligned_cols=296 Identities=8% Similarity=-0.049 Sum_probs=194.5
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.|.+.......+......|++++|+..++++.. .+|.+...+ ...+.++.+.|++++|...++++..+++...
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~~~~a~-~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~-- 144 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA----VNVCQPEDV-LLVASVLLKSKQYATVADLAEQAWLAFSGNS-- 144 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH----hCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--
Confidence 444444444555666667777777777777643 346653333 3336667777777777777777765543110
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-------HHHHhhHhhHHhHHHHHHHH---
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-------LARKLAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-------~~~~~~~~~~~~~~~~~~~~--- 173 (370)
......+.+....|+.++|+..+..++...+.. ......++..++....+..+
T Consensus 145 -----------------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 145 -----------------QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred -----------------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 011123334456677777777666543221100 00011122233333333211
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHhhcCCcc
Q 017532 174 ----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEG----AKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 174 ----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~a~~l~~~~~~~ 245 (370)
......++.++...|++++|+..++++++..| +++.+++.+|.++...|++++ |+..|++++++.|+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---- 282 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---- 282 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC----
Confidence 12234456778888999999999999988888 888888888999998998885 78888888865443
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
. ..++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|+.
T Consensus 283 --------~-~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-- 351 (656)
T PRK15174 283 --------N-VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-- 351 (656)
T ss_pred --------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--
Confidence 2 56677888898899999999999999998889888888889999989999999999999888888875
Q ss_pred hHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 326 NETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
......++.++.. .+..+.....++...+..|+.
T Consensus 352 -~~~~~~~a~al~~--~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 352 -SKWNRYAAAALLQ--AGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred -hHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhChhh
Confidence 3444445555542 344677777777666665554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=170.72 Aligned_cols=310 Identities=13% Similarity=0.116 Sum_probs=208.2
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCc-----ccc
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQ-----YET 105 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~-----~~~ 105 (370)
.......+.+.|+|++|+..+.+++.. +|.+...+ ..++.++..+|++++|..++..+..++....- ++.
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l----~p~~~~a~-~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALEL----DPDYSKAL-NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVER 237 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 334555678889999999999997653 57754444 44689999999999999887665433221100 000
Q ss_pred c------------CCCCCCCCCcccchh------------------------------HHHHHHHc-CcccCCccchHHH
Q 017532 106 Y------------PHIYPNRTGSMVPFS------------------------------LRWLYAVL-PIKLSNRQVGLDR 142 (370)
Q Consensus 106 ~------------~~~~~~~~~~~~~~~------------------------------~r~l~a~~-~~~~g~~~~al~~ 142 (370)
. ....+....+ ..+. +.+..... ....+.+.+|+..
T Consensus 238 ~l~~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~ 316 (615)
T TIGR00990 238 LLKKFAESKAKEILETKPENLPS-VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARA 316 (615)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHH
Confidence 0 0000000000 0000 00000000 0112445556665
Q ss_pred HHHHHHHH---HHHH------HH--HhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 143 FYELLDFV---REKL------AR--KLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 143 l~~ll~~~---~~~~------~~--~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
+..++... +... .. ...++.++++..+...+ ...+..+|.++...|++++|+..|+++++.+|
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 396 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 55554321 1000 00 01233445555555544 56788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.++.+++.+|.++...|++++|+.+|++++++.+ +. ...+.++|.++..+|++++|+..|++++..
T Consensus 397 -~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P------------~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 397 -EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP------------DF-IFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc------------cC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999996543 33 567889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---hHHHHHHHH-HHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---NETLVVNLC-SMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~~~nl~-~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+|+++.+++++|.++...|++++|++.|+++++++|+... ....+++.+ .+|+ ..+..++...++++.....|+
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~--~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ--WKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999987411 111222322 2333 123456666676665555555
Q ss_pred C
Q 017532 362 D 362 (370)
Q Consensus 362 ~ 362 (370)
+
T Consensus 541 ~ 541 (615)
T TIGR00990 541 C 541 (615)
T ss_pred c
Confidence 4
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-17 Score=156.81 Aligned_cols=264 Identities=14% Similarity=0.038 Sum_probs=193.8
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
+.++............|++++|+..+.++... +|.+...+ ...+..+...|++++|...++.+......
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~~~------ 101 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----DPETVELH-LALGNLFRRRGEVDRAIRIHQNLLSRPDL------ 101 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----CcccHHHH-HHHHHHHHHcCcHHHHHHHHHHHhcCCCC------
Confidence 44455555566778899999999999998654 57643333 33477888999999999999888543210
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH------H-H-HhhHhhHHhHHHHHHHH----
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL------A-R-KLAEKLEESVKSWKKRE---- 173 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~------~-~-~~~~~~~~~~~~~~~~~---- 173 (370)
..... .......+.++...|+.++|+..+..++...+... . . ...+..+++.+.+....
T Consensus 102 --------~~~~~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 102 --------TREQR-LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred --------CHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 00000 01122234455677888999888877764211110 0 0 01223334444444332
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 -------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 -------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
...+..+|.++...|++++|+..++++++..| .+..++..+|.++.+.|++++|++.|+++...
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 243 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQ-------- 243 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 23456788899999999999999999999999 88889999999999999999999999999953
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+|.....++..++.++...|++++|+..++++++.+|+...+ ..++.++...|++++|++.++++++..|+.
T Consensus 244 ----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 244 ----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred ----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 333224556778999999999999999999999999987554 899999999999999999999999999975
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=167.86 Aligned_cols=286 Identities=10% Similarity=-0.039 Sum_probs=215.8
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
-+..+.++|++.+|..++..+... .|.+...... .+.+.+..|++++|...++++..+++...
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------------ 110 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQP------------ 110 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCCh------------
Confidence 467888999999999999886543 5764334433 46778889999999999999977664221
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH--------HhhHhhHHhHHHHHHHH------HHHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR--------KLAEKLEESVKSWKKRE------IFVLNC 179 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~ 179 (370)
......+.+....|+..+|++.+..++...+..... ...+..+++........ ..++..
T Consensus 111 -------~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 111 -------EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 112334555577899999999998887642221110 01222334444443322 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
++ .+...|++++|+..+++++...|.........++.++...|++++|+..|++++++.++ . ..++
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~------------~-~~~~ 249 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD------------G-AALR 249 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------------C-HHHH
Confidence 43 47889999999999999999876344445566788999999999999999999965433 2 5567
Q ss_pred HhHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVS----AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 260 ~~~g~~~~~~g~~~e----A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.++|.++...|++++ |+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+|++ ..+..+++.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~---~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL---PYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 889999999999996 8999999999999999999999999999999999999999999999998 788899999
Q ss_pred HHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 336 MYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 336 lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+|.- .+..+.....++.+....|+.
T Consensus 327 ~l~~--~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 327 ALRQ--VGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHH--CCCHHHHHHHHHHHHHhCccc
Confidence 9874 444677777777776666664
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=173.82 Aligned_cols=307 Identities=13% Similarity=0.073 Sum_probs=177.7
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCC--
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGY-- 101 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~-- 101 (370)
++.+..........+...|++++|+..++++... .|.+...+ ...+.++.+.|++++|...++.+....+...
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADA----APDSPEAW-LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 4455555556677777888888888888776432 34433333 3336777777888888887777754432110
Q ss_pred cccccCCC-CCCCCCcc------------cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhH
Q 017532 102 QYETYPHI-YPNRTGSM------------VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAE 160 (370)
Q Consensus 102 ~~~~~~~~-~~~~~~~~------------~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~ 160 (370)
++...... ..+..... .........+.+....|+.++|+..+..+....+.... ....+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 00000000 00000000 00000111122223334444444444333221110000 00112
Q ss_pred hhHHhHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 161 KLEESVKSWKKRE-----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 161 ~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
...++.+.+.... ..++..++.++...|++++|+..++++++..| .+..+++.+|.++...|++++|+.+|+++
T Consensus 718 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 2233333333332 23455677777777777777777777777777 77777777777787788888888888777
Q ss_pred HHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 236 EEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 236 ~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
++..++ . ..++.++|.++...|+ ++|+..++++++..|+++.++.++|.++...|++++|+++|++
T Consensus 797 ~~~~p~------------~-~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 797 VKKAPD------------N-AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHhCCC------------C-HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 754322 1 4456667777777777 7788888888888888887788888888888888888888888
Q ss_pred HHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 316 ALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 316 al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
+++.+|.+ ..+.++++.+|.. .+..+....+++.+
T Consensus 863 a~~~~~~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 863 AVNIAPEA---AAIRYHLALALLA--TGRKAEARKELDKL 897 (899)
T ss_pred HHhhCCCC---hHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 88888765 6777777777654 33356666655543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-17 Score=169.16 Aligned_cols=306 Identities=15% Similarity=0.158 Sum_probs=155.5
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.|.++.........+...|++++|+..+.++... +|.+...++. .+..+.+.|++++|...++.+.+..+...
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 601 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALA-LAQYYLGKGQLKKALAILNEAADAAPDSP-- 601 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCH--
Confidence 4455555555667778899999999999997543 4654444433 47789999999999999999876543211
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH------H--HhhHhhHHhHHHHHHHH--
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA------R--KLAEKLEESVKSWKKRE-- 173 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~------~--~~~~~~~~~~~~~~~~~-- 173 (370)
......+.+....|++++|+..+..++...+.... . ...+..+++...+....
T Consensus 602 -----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 602 -----------------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 00111223334455555555555554432111000 0 01112222333332222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc-----
Q 017532 174 ----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF----- 244 (370)
Q Consensus 174 ----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~----- 244 (370)
..++..++.++...|++++|+.+++.+....| .++..+..+|.++...|++++|++.|++++...++...
T Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 23334444444444444444444444444444 44444444444444444444444444444432211000
Q ss_pred ----cCCc------------cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH
Q 017532 245 ----EDGL------------LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 245 ----~~~~------------~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
..+. ..+|+. ..++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|+ .+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPND-AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 0000 001111 33445556666666666666666666666666666666666666666666 55
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
|++.+++++...|++ ...+.+++.+|. ..+..+....+++..-...|+
T Consensus 822 A~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 822 ALEYAEKALKLAPNI---PAILDTLGWLLV--EKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHhhCCCC---cHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCC
Confidence 666666666666654 445555555543 223345555555544444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=160.80 Aligned_cols=256 Identities=16% Similarity=0.186 Sum_probs=127.8
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHH-HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYN-TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~-~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
.+..+...=+|++|++.+.+.-. ..++ .-|+... +.++..++.|++|.+.|+.+.++++..+
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~----h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv----------- 387 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPS----HHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV----------- 387 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH----hcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----------
Confidence 44556677789999999988322 2233 2344333 5689999999999999999977664222
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHh---------------hHhhHHhHHHHHHHH----
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKL---------------AEKLEESVKSWKKRE---- 173 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---- 173 (370)
..|.-++.-+++ +.+ +-++..+ +...+..++ +.+.+.+++.+++..
T Consensus 388 --~~meiyST~LWH------Lq~-~v~Ls~L------aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 388 --KGMEIYSTTLWH------LQD-EVALSYL------AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred --cchhHHHHHHHH------HHh-hHHHHHH------HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 111111111111 000 0111111 111111100 011112233332222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 --IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
+.+|..+|.-+....+|+.|...|+.++..+| .+..+|+.+|.+|+++++++.|+-+|++|++ ++
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------IN 519 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------IN 519 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhc------------CC
Confidence 34444455455555555555555555555555 5555555555555555555555555555552 23
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
|.. ..+....|.++.+.|+.++|+..|++|+.++|.++...+.+|.++..++++++|...+|++.+..|+. ..+++
T Consensus 520 P~n-svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e---s~v~~ 595 (638)
T KOG1126|consen 520 PSN-SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE---SSVFA 595 (638)
T ss_pred ccc-hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch---HHHHH
Confidence 333 34444455555555555555555555555555555555555555555555555555555555555554 44445
Q ss_pred HHHHHHH
Q 017532 332 NLCSMYE 338 (370)
Q Consensus 332 nl~~lye 338 (370)
-++.+|-
T Consensus 596 llgki~k 602 (638)
T KOG1126|consen 596 LLGKIYK 602 (638)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=170.21 Aligned_cols=274 Identities=16% Similarity=0.121 Sum_probs=195.4
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
..+.+.+.|+|++|++.+++++.. +|.+......+........|++++|...++++...++..
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~----~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~------------- 180 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNG----APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN------------- 180 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccC----CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC-------------
Confidence 345688999999999999997543 354322111111112234699999999999997654311
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH----------HHHH-------------H----hh-HhhHHh
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE----------KLAR-------------K----LA-EKLEES 165 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~----------~~~~-------------~----~~-~~~~~~ 165 (370)
. ..+...+.+....|+.++|+..+.+++..... .+.. . .. .....+
T Consensus 181 ~------~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 181 T------GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred H------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 1 23455677778889999999999887532110 0000 0 00 000011
Q ss_pred HHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 166 VKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 166 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
...+.... ......+|..+...|++++|+..|+++++.+| .++.++..+|.++.+.|++++|+.+|++++++.
T Consensus 255 ~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11111100 01122458889999999999999999999999 999999999999999999999999999999876
Q ss_pred hcCCccCCccchH-----HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 240 NEGKFEDGLLSEV-----EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 240 ~~~~~~~~~~~~p-----~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
++... .... ..........|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+
T Consensus 334 p~~~~----~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 334 PHSSN----RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred CCccc----hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65310 0000 00122345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHH
Q 017532 315 NALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lye 338 (370)
++++.+|++ ...+.+++.+|.
T Consensus 410 ~aL~~~p~~---~~a~~~L~~l~~ 430 (1157)
T PRK11447 410 QALRMDPGN---TNAVRGLANLYR 430 (1157)
T ss_pred HHHHhCCCC---HHHHHHHHHHHH
Confidence 999999987 666777777764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=170.77 Aligned_cols=279 Identities=11% Similarity=0.005 Sum_probs=176.9
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
...++..|++++|+..+++++.. +|.+...+.. .+.++.+.|++++|...++++..+++...-...+..+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~----~P~~~~a~~~-Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll---- 346 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA----NPKDSEALGA-LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL---- 346 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH----
Confidence 45678899999999999997653 5876555444 48889999999999999999976653211000000000
Q ss_pred CcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017532 115 GSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194 (370)
Q Consensus 115 ~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 194 (370)
....+...+..+......|++.+|+..+.+++...+.. ..++..+|.++...|++++|+
T Consensus 347 -~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~--------------------~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 347 -KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD--------------------SYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred -HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHH
Confidence 00001111122334466788888888777766432211 134567788888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHH------------------------------------------HHHHHHcCCHHHHHHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKL------------------------------------------GFIQMQVGDLEGAKKSF 232 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~l------------------------------------------g~~~~~~g~~~~A~~~~ 232 (370)
..|+++++.+| .+..++..+ |.++...|++++|++.|
T Consensus 406 ~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 406 RYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888 665554433 44556678999999999
Q ss_pred HHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-------------------
Q 017532 233 NRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI------------------- 293 (370)
Q Consensus 233 ~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~------------------- 293 (370)
++++++.|++ ..++..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 485 ~~Al~~~P~~-------------~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 485 RQRLALDPGS-------------VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HHHHHhCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9988765442 34456667777777777777777777766666554322
Q ss_pred -------------------------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 294 -------------------------------------------------------NNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 294 -------------------------------------------------------~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.++|.++...|++++|++.|+++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555566666666666666666
Q ss_pred hCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 319 RVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 319 ~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.+|++ ..++++++.+|... +..+++.+.++.+....|++
T Consensus 632 ~~P~~---~~a~~~la~~~~~~--g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 632 REPGN---ADARLGLIEVDIAQ--GDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred hCCCC---HHHHHHHHHHHHHC--CCHHHHHHHHHHHhccCCCC
Confidence 66665 55666666666532 33555555555555444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=163.03 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=119.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.++..+...|++++|+..|+++++.+| + +.++..+|.++.+.|++++|+..|++++++.|+ . ..+
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P-~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------------~-~~a 645 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAP-S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------------N-SNY 645 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------C-HHH
Confidence 445555566999999999999999998 6 788899999999999999999999999976444 2 567
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
+.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|+. ..+.+..+.+.+
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~---a~i~~~~g~~~~ 722 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ---ALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---chhhhhhhHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999987 455555555544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=159.00 Aligned_cols=238 Identities=13% Similarity=0.018 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHH
Q 017532 65 HHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFY 144 (370)
Q Consensus 65 ~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~ 144 (370)
+...++. .+.++.. +++++|...+.+.....+ + .+ .++..+......|++.+|+..+.
T Consensus 476 ~~~a~~~-LG~~l~~-~~~~eAi~a~~~Al~~~P-d------------------~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 476 DAAAWNR-LAKCYRD-TLPGVALYAWLQAEQRQP-D------------------AW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred CHHHHHH-HHHHHHh-CCcHHHHHHHHHHHHhCC-c------------------hH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333 3666666 788888887777654332 1 01 13333444456788888887776
Q ss_pred HHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 017532 145 ELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD 224 (370)
Q Consensus 145 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~ 224 (370)
.+....+.. ..++.+|.++...|++++|+..|+++++.+| .+......++......|+
T Consensus 534 ka~~~~p~~---------------------~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 534 KISLHDMSN---------------------EDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHhccCCCc---------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCC
Confidence 653211100 1124567778888888888888888888888 776666666666667788
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
+++|+..|++++++.| + ...+.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus 592 ~~eAl~~~~~AL~l~P------------~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 592 PELALNDLTRSLNIAP------------S--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHHHHHHhCC------------C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 8888888888885432 1 3457788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 305 DLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 305 ~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
++++|++.|+++++.+|++ ..+++|++.+|... +..+.....++.+-...|+..++
T Consensus 658 ~~eeAi~~l~~AL~l~P~~---~~a~~nLA~al~~l--Gd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDD---PALIRQLAYVNQRL--DDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCchh
Confidence 8888888888888888887 77888888888743 34677777777777777776554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-15 Score=151.77 Aligned_cols=330 Identities=9% Similarity=-0.046 Sum_probs=206.1
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCC--Cc
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSG--YQ 102 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~--~~ 102 (370)
|.+..........++..|++.+|+..+++++.. .|.+.. + ...+.++...|++++|+..++++..+++.. .+
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~-~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~ 153 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----APDKAN-L-LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYP 153 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-H-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 344333444556677788888888877776443 466544 3 334667778888888888888887665422 11
Q ss_pred ccccCCCCC-CCCCcc---------cchh-------HHHHHHHcCc-----ccCCc---cchHHHHHHHHHHHHH-----
Q 017532 103 YETYPHIYP-NRTGSM---------VPFS-------LRWLYAVLPI-----KLSNR---QVGLDRFYELLDFVRE----- 152 (370)
Q Consensus 103 ~~~~~~~~~-~~~~~~---------~~~~-------~r~l~a~~~~-----~~g~~---~~al~~l~~ll~~~~~----- 152 (370)
+.+...+.. +..... .|-. ......++.. ..++. ++|+..+..++...+.
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 111000000 000000 0000 0000001100 01111 3455555444422100
Q ss_pred -HH--------H-HHhhHhhHHhHHHHHHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHH
Q 017532 153 -KL--------A-RKLAEKLEESVKSWKKREI-------FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD----PIL 211 (370)
Q Consensus 153 -~~--------~-~~~~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~ 211 (370)
.. . ....+...+++..++.... .+...++.+++..|++++|+..|++++...| .+ ...
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p-~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE-TIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC-CCCCCChHH
Confidence 00 0 0011223344444444331 1233468888899999999999999888777 43 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC-CccchHHH-HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED-GLLSEVEF-RNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~-~~~~~p~~-~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
...++.++...|++++|+..++++.+..|...... .....|+. ...+...+|.++...|++++|++.|++++...|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 67778888899999999999998886543210000 00111221 14566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCCc
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSS 366 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~ 366 (370)
+.++.++|.++...|++++|++.++++++.+|++ ..+.+.++.++.- .+.-++...+++.+....||+..+.
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~---~~l~~~~a~~al~--~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN---INLEVEQAWTALD--LQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999997 7788888887663 4457888888888888888875443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-16 Score=128.72 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+...||..|++.|++..|...++++++.+| .+..++..++.+|...|+.+.|.+.|++|+++.+++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 4455788899999999999999999999999 999999999999999999999999999999765543
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
+++++|.|.-++.+|++++|...|+++++. .|..+.++-|+|.|.++.|+++.|.++|+++++.+|++ ......
T Consensus 103 -GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---~~~~l~ 178 (250)
T COG3063 103 -GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---PPALLE 178 (250)
T ss_pred -cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---ChHHHH
Confidence 778899999999999999999999999875 36677899999999999999999999999999999987 566666
Q ss_pred HHHHHHhccCCchhhHHHHHHHHh
Q 017532 333 LCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 333 l~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
++...-. .+....++.+++.+.
T Consensus 179 ~a~~~~~--~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 179 LARLHYK--AGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHh--cccchHHHHHHHHHH
Confidence 6655432 333455555555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-15 Score=137.26 Aligned_cols=136 Identities=17% Similarity=0.147 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
++++...|..++..|++..|...++.+|+.+| .+...+..+|.+|.+..+-++-.+.|++|.++.+.
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~------------ 392 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE------------ 392 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC------------
Confidence 56777778888888888888888888888888 77777888888888888888888888888865443
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
. ..+++.+|.+++..+++++|+..|+++++++|++..++..++.++++++++++++..|+.+++..|+.
T Consensus 393 n-~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~ 461 (606)
T KOG0547|consen 393 N-PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC 461 (606)
T ss_pred C-CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 55677788888888888888888888888888888888888888888888888888888888888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-15 Score=140.89 Aligned_cols=251 Identities=17% Similarity=0.141 Sum_probs=167.3
Q ss_pred HHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH-
Q 017532 73 NTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR- 151 (370)
Q Consensus 73 ~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~- 151 (370)
++..+...|++++|...+.++...++... ......+.+....|+.++|+..+..++....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 101 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETV-------------------ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL 101 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccH-------------------HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC
Confidence 46677788999999999999977653111 1122334455678999999988877654210
Q ss_pred ------H---HHHH--HhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 017532 152 ------E---KLAR--KLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP----- 209 (370)
Q Consensus 152 ------~---~~~~--~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----- 209 (370)
. .+.. ...+..+.+...+.... ..++..++.++...|++++|+..++++++.+| .+.
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 180 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIA 180 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHH
Confidence 0 0000 01122333444444332 45677778888888888888888888887766 332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
..+..+|.++...|++++|+.+|+++++..+ +. ..++..+|.++...|++++|++.|++++..+|.+
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------------~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADP------------QC-VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 2445678888888888888888888885432 22 4556778888888888888888888888877765
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 290 -IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 290 -~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
..+++.++.++...|++++|+..++++++.+|+. . ....++.++.. .+..+++..+++..-+..|+.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~-~~~~la~~~~~--~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA---D-LLLALAQLLEE--QEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---h-HHHHHHHHHHH--hCCHHHHHHHHHHHHHhCcCH
Confidence 3567778888888888888888888888888864 3 33667776653 344566666666554445553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-15 Score=129.91 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=157.6
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|+.++|+..+...+...+.. ..++..+|.++...|++++|+..++++++..|
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~~~p~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 96 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHDPDD--------------------YLAYLALALYYQQLGELEKAEDSFRRALTLNP 96 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3445567888888888887765432111 14556788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.+...+..+|.++...|++++|++.|++++.... .+.. ...+.++|.++...|++++|...|++++..
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 97 -NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----------YPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----------cccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999985321 1111 445777999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
+|++..++..+|.++...|++++|+..+++++...|.. ...+..++.++... +..++...+.+.+..
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT---AESLWLGIRIARAL--GDVAAAQRYGAQLQK 231 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--hhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997765 55666777777643 335666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-17 Score=140.77 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=186.1
Q ss_pred HHHHHHH--HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHH
Q 017532 67 LTYLAYN--TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFY 144 (370)
Q Consensus 67 ~~~~~~~--~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~ 144 (370)
..|||-. +-||.++|.+.+|.+.++....--+ ++ ...++.++++.....+..|+..+-
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~------------------~~--dTfllLskvY~ridQP~~AL~~~~ 280 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP------------------HP--DTFLLLSKVYQRIDQPERALLVIG 280 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC------------------ch--hHHHHHHHHHHHhccHHHHHHHHh
Confidence 4565542 4689999999999999988764321 01 112345555566677778887776
Q ss_pred HHHHHHHHHHH--------HHhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 145 ELLDFVREKLA--------RKLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 145 ~ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
+-+...+..+. ....++.+++.++++..+ .++.-.++..|+-.++.+-|+.+|+++++.+- .++.
T Consensus 281 ~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~spe 359 (478)
T KOG1129|consen 281 EGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPE 359 (478)
T ss_pred hhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChH
Confidence 66544333221 112344556777777665 44555677778888999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
++.++|.+++..+++|-++.+|++++.... .|+..+++|+|+|.+....|++.-|..+|+-++..||++.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat----------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTAT----------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhcc----------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 999999999999999999999999997533 3344488999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.+++|+|+.-.+.|+.++|.+++..+-...|+- ....+|+..+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m---~E~~~Nl~~~ 472 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPDM---AEVTTNLQFM 472 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc---cccccceeEE
Confidence 999999999999999999999999999999986 5666777654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=144.05 Aligned_cols=147 Identities=16% Similarity=0.047 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+|.++...|++++|+..|+++++.+| +++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~------------ 405 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR------------ 405 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------------
Confidence 3455677777778888888888888888888 888888888888888888888888888888654432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
......++.+++..|++++|+..+++++..+ |+++.++.++|.++...|++++|+..++++....|.. ......+
T Consensus 406 -~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~---~~~~~~l 481 (553)
T PRK12370 406 -AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG---LIAVNLL 481 (553)
T ss_pred -hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh---HHHHHHH
Confidence 1223335556667788888888888887764 6777778888888888888888888888877776664 5555566
Q ss_pred HHHHH
Q 017532 334 CSMYE 338 (370)
Q Consensus 334 ~~lye 338 (370)
+..|.
T Consensus 482 ~~~~~ 486 (553)
T PRK12370 482 YAEYC 486 (553)
T ss_pred HHHHh
Confidence 65554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=143.48 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=185.7
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccc------------------------------cCCchHHHHHHHHHHHHHhhhcC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSL------------------------------LTQPHHHLTYLAYNTLALMKLRR 82 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~------------------------------~~~P~~~~~~~~~~~~al~~l~~ 82 (370)
...+..+..++|++|.+.++.+.+..- ..+|..+.+|+.+ +-|+.-.+.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~-GNcfSLQkd 436 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCAL-GNCFSLQKD 436 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHh-cchhhhhhH
Confidence 356778888999999988888644320 1345544555443 677888899
Q ss_pred HHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhh
Q 017532 83 FDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKL 162 (370)
Q Consensus 83 ~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~ 162 (370)
++.|++.|++++.+|+-..| . +.-+|...-+.+.++.....++..+.-..
T Consensus 437 h~~Aik~f~RAiQldp~faY-a-------------------------yTLlGhE~~~~ee~d~a~~~fr~Al~~~~---- 486 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFAY-A-------------------------YTLLGHESIATEEFDKAMKSFRKALGVDP---- 486 (638)
T ss_pred HHHHHHHHHHhhccCCccch-h-------------------------hhhcCChhhhhHHHHhHHHHHHhhhcCCc----
Confidence 99999999999998862222 1 01123333344444444444443332211
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 017532 163 EESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~ 242 (370)
+. -.+++.+|.+|+++++++.|...|+++++++| .+..++..+|.++.+.|+.|+|+..|++|+-+.+.+
T Consensus 487 -rh--------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 487 -RH--------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred -hh--------hHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 11 15668999999999999999999999999999 999999999999999999999999999999765543
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
....+.+|.+++..+++++|+..++++-++-|++..+++.+|.+|...|+.+.|+..|.=|..++|+
T Consensus 557 -------------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 557 -------------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred -------------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3456779999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 017532 323 V 323 (370)
Q Consensus 323 ~ 323 (370)
.
T Consensus 624 g 624 (638)
T KOG1126|consen 624 G 624 (638)
T ss_pred c
Confidence 5
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-16 Score=140.24 Aligned_cols=259 Identities=16% Similarity=0.131 Sum_probs=102.1
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
.-...+.+.|++++|++.+.+..... ..|.+ ..+|...+.....+++++.|...++++...++....
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~--~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~---------- 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI--APPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ---------- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--ccccc-cccccccccccccccccccccccccccccccccccc----------
Confidence 44667889999999999886642221 12443 344444455566789999999999999765431100
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
...++ ..+ ...+++++|++.+....+..... ..+...+.++...+++++
T Consensus 80 -------~~~~l--~~l-~~~~~~~~A~~~~~~~~~~~~~~---------------------~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 80 -------DYERL--IQL-LQDGDPEEALKLAEKAYERDGDP---------------------RYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred -------ccccc--ccc-ccccccccccccccccccccccc---------------------chhhHHHHHHHHHhHHHH
Confidence 01121 122 46688888887665543222110 112234455667788888
Q ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 193 CFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 193 A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
+...++++....+ ..++..+..+|.++.+.|+.++|+..|++++++.|++ ..+...++.+++..|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-------------~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-------------PDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--------------HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------HHHHHHHHHHHHHCCC
Confidence 8888888765441 2667777888888888888888888888888665442 3445667777888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHH
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTL 351 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~l 351 (370)
++++.+.++......|.++..+..+|.++..+|++++|+..|+++++.+|++ ..++.+++.+++.. |..+.+..+
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d---~~~~~~~a~~l~~~--g~~~~A~~~ 270 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD---PLWLLAYADALEQA--GRKDEALRL 270 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT-------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc---cccccccccccccc--ccccccccc
Confidence 8888777777777777777788888888888888888888888888888876 77777888777643 334444444
Q ss_pred HH
Q 017532 352 SS 353 (370)
Q Consensus 352 l~ 353 (370)
.+
T Consensus 271 ~~ 272 (280)
T PF13429_consen 271 RR 272 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-13 Score=142.69 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+...|++.|++++|+.+|+++.+.+-..+..++..+...+.+.|++++|.+.|+++.+. ...|+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----------G~~pd- 683 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ----------GIKLG- 683 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----------CCCCC-
Confidence 4566666677777777777777777766554345666666677777777777777777776632 12222
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
...+..+...|.+.|++++|.+.|+++.+.. ..+..+|+.+..+|++.|++++|++.|+++....-.+ +...+..+
T Consensus 684 -~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sL 760 (1060)
T PLN03218 684 -TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSIL 760 (1060)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 2345556667777788888888777776542 3356677777777888888888888887776553222 02222233
Q ss_pred HHHHHhccCCchhhHHHHHHHHh
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
-..| +..+..+....++....
T Consensus 761 L~a~--~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 761 LVAS--ERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHH--HHCCCHHHHHHHHHHHH
Confidence 3333 23344555555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=135.90 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=126.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
-+|.-|.++++++.|...|.+++.+.| .++..+..+|.+.+..+.+.+|..+|+.++...+... ...+.+ .-.
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-----~e~~~w-~p~ 457 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-----NEKIFW-EPT 457 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-----ccccch-hHH
Confidence 466778889999999999999999999 9999999999999999999999999999985443321 112223 456
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
+.|+|.++.+.+++++|+..|++++.+.|.++.++..+|.++..+|+++.|++.|.+++.++|++.....++
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999874433333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-13 Score=140.43 Aligned_cols=293 Identities=12% Similarity=0.055 Sum_probs=199.6
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......+...|+|.+|+.++.+++.. +|.+...+. ..+.++...|++++|...++++...++....
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~-~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--------- 118 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQR-GLILTLADAGQYDEALVKAKQLVSGAPDKAN--------- 118 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------
Confidence 44566788999999999999997543 576544443 3467889999999999999999766532211
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH-----------------------------------
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR----------------------------------- 156 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~----------------------------------- 156 (370)
....+.+....|++.+|+..+..++...+.....
T Consensus 119 -----------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 119 -----------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred -----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 1122333344555555555555443321100000
Q ss_pred ----------H------hhHhh---HHhHHHHHHHH-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 157 ----------K------LAEKL---EESVKSWKKRE-------------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 157 ----------~------~~~~~---~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
. ..+.. +.+++..+... ..+.......++..|++++|+..|+++++..
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 0 00000 11122111111 1222222334567899999999999999887
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 205 NGLDP-ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 205 ~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+ ..+ .+...+|.+++..|++++|+.+|+++++..+.. ...+ ......++.++...|++++|+..++++.
T Consensus 268 ~-~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~------~~~~---~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 268 Q-IIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI------ADLS---DEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred C-CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC------CCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 5 322 344556999999999999999999988543221 0000 2334557778899999999999999999
Q ss_pred hhCCC-------------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhH
Q 017532 284 ERDYN-------------D--IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIK 348 (370)
Q Consensus 284 ~~~p~-------------~--~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~ 348 (370)
..+|. + ..++..+|.++...|++++|++.+++++...|++ ..++++++.++.- .+..++.
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~--~g~~~~A 412 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQA--RGWPRAA 412 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHh--cCCHHHH
Confidence 98763 2 3577899999999999999999999999999998 8899999999974 3447888
Q ss_pred HHHHHHHhhhCCCCCC
Q 017532 349 RTLSSWIGRVAPDDFD 364 (370)
Q Consensus 349 ~~ll~~~~~~~~d~~~ 364 (370)
...++.+....||+.+
T Consensus 413 ~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 413 ENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHHHhhCCCChH
Confidence 8888888888888744
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=132.19 Aligned_cols=248 Identities=15% Similarity=0.082 Sum_probs=187.2
Q ss_pred HHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH
Q 017532 75 LALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL 154 (370)
Q Consensus 75 ~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~ 154 (370)
.++-.+.+.+++......+.+..- +++ + .+....|.+.+...++++|+..|+++.+..+-.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf---------------~~~--~-~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl 296 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGF---------------PNS--M-YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC---------------Ccc--H-HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc
Confidence 455566677777776666533210 111 1 1233456667888999999999999876633222
Q ss_pred HH---H-----------hhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017532 155 AR---K-----------LAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQM 220 (370)
Q Consensus 155 ~~---~-----------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~ 220 (370)
.. . +...+...+-.-.+-..++...+|+.|.-.++.+.|+.+|+++++++| ....+|..+|.=|+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYV 375 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHH
Confidence 11 0 000000000000011145667888999999999999999999999999 99999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
.+.+...|++.|.+|++++|. . -.+|+.+|..|-.++.+.=|+-+|+++++..|+|+..|..+|.||
T Consensus 376 EmKNt~AAi~sYRrAvdi~p~------------D-yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINPR------------D-YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY 442 (559)
T ss_pred HhcccHHHHHHHHHHHhcCch------------h-HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 999999999999999965443 3 578999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 301 MYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 301 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
.++++.++|+++|.+++...-.. ...++.|+.+||-.++ .++++..+...|...
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte---~~~l~~LakLye~l~d-~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTE---GSALVRLAKLYEELKD-LNEAAQYYEKYVEVS 496 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 99999999999999999987654 7889999999997666 336666665555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=121.68 Aligned_cols=206 Identities=14% Similarity=0.032 Sum_probs=165.1
Q ss_pred HHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017532 123 RWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIG 202 (370)
Q Consensus 123 r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 202 (370)
|+-.+.-+...|++..|.+.+++.++..+... .++..++.+|...|+.+.|.+.|+++++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--------------------~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--------------------LAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--------------------HHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 43344444677888888888888876655443 4567889999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 203 RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 203 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
+.| .+.+++++-|.-++.+|++++|...|++|+.. +..+.. ...+-|+|.|.+++|+++.|.++|+++
T Consensus 98 l~p-~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----------P~Y~~~-s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 98 LAP-NNGDVLNNYGAFLCAQGRPEEAMQQFERALAD----------PAYGEP-SDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred cCC-CccchhhhhhHHHHhCCChHHHHHHHHHHHhC----------CCCCCc-chhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 999 99999999999999999999999999999942 223333 778999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 283 IERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 283 l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
++.+|+++.+.--++..+++.|++-.|..++++.....+-.+..-++-+.++... +.......+-..+.+.-|..
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~-----gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL-----GDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999998877664322233334444443 23566666766676666655
Q ss_pred CCC
Q 017532 363 FDS 365 (370)
Q Consensus 363 ~~~ 365 (370)
.+.
T Consensus 241 ~e~ 243 (250)
T COG3063 241 EEY 243 (250)
T ss_pred HHH
Confidence 443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=125.83 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=190.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
++.||..-......++..|++..|+..|-.+ +..+|++-++.+. |+..++.+|+...|+.++.++..+-+ +++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaA----ve~dp~~Y~aifr-RaT~yLAmGksk~al~Dl~rVlelKp-DF~- 106 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAA----VEGDPNNYQAIFR-RATVYLAMGKSKAALQDLSRVLELKP-DFM- 106 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HcCCchhHHHHHH-HHHHHhhhcCCccchhhHHHHHhcCc-cHH-
Confidence 6678888888899999999999999888775 4457875343333 57778888888888888888866542 221
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH------H---H--------------HHHhhH
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE------K---L--------------ARKLAE 160 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~------~---~--------------~~~~~~ 160 (370)
.-|+-.+.+....|..++|...|..++...+. . + .....+
T Consensus 107 -----------------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 107 -----------------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred -----------------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 12444444556677777777777665533110 0 0 000011
Q ss_pred hhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017532 161 KLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 161 ~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 234 (370)
....+++.....+ +..+..++.+|...|+...||..++.+-++.. ++...++.++.++...||.+.++....+
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1111222221111 45566778888888888888888888888877 8888888888888888888888877777
Q ss_pred HHHHhhcCCc-------------------------------cCCc---cchHH---HHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 235 VEEMLNEGKF-------------------------------EDGL---LSEVE---FRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 235 a~~l~~~~~~-------------------------------~~~~---~~~p~---~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
.+++.++... ..+. ..+|+ ++......+..|+...|++.+|+.
T Consensus 249 CLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 249 CLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 6655554311 0000 11111 112223346778888999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 278 EYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 278 ~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
.+.+++..+|+|..++..+|.+|+-...||+||..|++|.+.++++.
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999999999999999999999999999999873
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-14 Score=123.33 Aligned_cols=169 Identities=20% Similarity=0.219 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
...++.+|..+...|++++|+..++++++..| .+..++..+|.++...|++++|++.|++++++.+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------
Confidence 35667899999999999999999999999999 889999999999999999999999999999754331
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
...+.++|.+++..|++++|++.|++++... |.....+.++|.++...|++++|+..+++++..+|.. ....+
T Consensus 99 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 173 (234)
T TIGR02521 99 --GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR---PESLL 173 (234)
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---hHHHH
Confidence 4467889999999999999999999999853 5667889999999999999999999999999999986 66788
Q ss_pred HHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 332 NLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 332 nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
.++.+|.. .+..+....+++......++
T Consensus 174 ~la~~~~~--~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 174 ELAELYYL--RGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Confidence 89988874 34467777777766555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-13 Score=139.54 Aligned_cols=289 Identities=6% Similarity=-0.043 Sum_probs=210.5
Q ss_pred CChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 30 PDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 30 ~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+..+++.|+++.|..++.++...+. .|+ ...++..+.++++.|++++|...++.|.....
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl--~pD--~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv----------- 503 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGL--KAD--CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV----------- 503 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--CCC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-----------
Confidence 344577888899999999999999877663 354 33344447889999999999999999853211
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH--------HHHHHHHH-hhHhhHHhHHHHHHHH-------
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF--------VREKLARK-LAEKLEESVKSWKKRE------- 173 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~--------~~~~~~~~-~~~~~~~~~~~~~~~~------- 173 (370)
.+..+.+..+...+ ...|+.++|+..+..+... +...+... ..+..+++.+++.++.
T Consensus 504 ------~PdvvTynaLI~gy-~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 504 ------EANVHTFGALIDGC-ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred ------CCCHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 11222334443332 6789999999888777432 12222211 2234445666666553
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 --IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..++..+...|.+.|++++|..+|+++.+.+...+...|+.+...|.+.|++++|.+.|+++.+. ...
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----------Gv~ 646 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----------GVK 646 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCC
Confidence 35788899999999999999999999999885478889999999999999999999999999852 234
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
|+ ...+..+...+.+.|++++|.+.|+++.+.+ +.+..+|+.+..+|.+.|++++|++.|+++.+....+. ...+
T Consensus 647 PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvty 722 (1060)
T PLN03218 647 PD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTM 722 (1060)
T ss_pred CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHH
Confidence 44 2355667778889999999999999999875 56788999999999999999999999999977543331 2333
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 331 VNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 331 ~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
..|...| +..+..+++.+++....
T Consensus 723 N~LI~gy--~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 723 NALITAL--CEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHH--HHCCCHHHHHHHHHHHH
Confidence 3344444 45666788888877654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-15 Score=132.97 Aligned_cols=257 Identities=14% Similarity=0.104 Sum_probs=184.5
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.....+++.+|..|++.|..++... |.+ ..+|..|+..++.+++|++|.-+.+....+++...- .
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~----pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--~-------- 119 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC----PDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--G-------- 119 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC----ccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccc--c--------
Confidence 4556789999999999999987764 775 667778899999999999999998888776642211 0
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH---HHHhhHhhHHhHHHH--HHHHHHHHHHHHHHHHhcC
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL---ARKLAEKLEESVKSW--KKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g 188 (370)
. ...++...++..+.+........- ........+..+..- ......+...-+.++.-.|
T Consensus 120 ~----------------~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~ 183 (486)
T KOG0550|consen 120 Q----------------LREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183 (486)
T ss_pred c----------------cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc
Confidence 0 111222222222211111111000 000000000000000 0011233446677888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
++++|+..-..++++++ .+..+++..|.++...++.++|+.+|++++++.|+..........|.. ...+...|+-.++
T Consensus 184 ~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~-le~~k~~gN~~fk 261 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK-LEVKKERGNDAFK 261 (486)
T ss_pred cchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH-HHHHHhhhhhHhh
Confidence 99999999999999999 999999999999999999999999999999887764321112334444 7788899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 269 GKDYVSAVREYEECIERDYNDI----VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.|+|.+|.++|..+|.++|++. ..|.|+|.+..++|+..+|+..++.++.++|..
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 9999999999999999999754 679999999999999999999999999999986
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7e-14 Score=138.52 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 174 IFVLNCLIGYHLS---------SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 174 ~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
..++..+|.++.. .+++++|+..++++++.+| +++.++..+|.++...|++++|+..|++++++.|+
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--- 370 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI--- 370 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Confidence 4556666665542 3458999999999999999 99999999999999999999999999999976544
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCc
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV-PTV 323 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~-p~~ 323 (370)
. ..++..+|.++...|++++|+..|+++++++|.++.+++.++.+++..|++++|+..+++++... |+.
T Consensus 371 ---------~-~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 371 ---------S-ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN 440 (553)
T ss_pred ---------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC
Confidence 2 56788899999999999999999999999999999887778878888999999999999999886 555
Q ss_pred chhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 324 ALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 324 ~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
...+.+++.+|.. .+..+++...+..+....|+
T Consensus 441 ---~~~~~~la~~l~~--~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 441 ---PILLSMQVMFLSL--KGKHELARKLTKEISTQEIT 473 (553)
T ss_pred ---HHHHHHHHHHHHh--CCCHHHHHHHHHHhhhccch
Confidence 5677888988864 34466777776666555554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=127.11 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..|.-++..|....+.++-...|+++..++| .++.+++..|.+++-++++++|+.-|++++++ +|+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L------------~pe~ 427 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISL------------DPEN 427 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc------------Chhh
Confidence 4477889999999999999999999999999 99999999999999999999999999999954 6666
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
...++.+|...+++++++++...|+.++...|+.+.+++..|.++...++|++|++.|++++++.|.
T Consensus 428 -~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 428 -AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 8889999999999999999999999999999999999999999999999999999999999999998
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=120.21 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=104.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHH
Q 017532 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~ 273 (370)
...++++++.+| ++ +..+|.++.+.|++++|+.+|++++.+ +|.. ..++.++|.++...|+++
T Consensus 13 ~~~~~~al~~~p-~~---~~~~g~~~~~~g~~~~A~~~~~~al~~------------~P~~-~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSVDP-ET---VYASGYASWQEGDYSRAVIDFSWLVMA------------QPWS-WRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHcCH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHc------------CCCc-HHHHHHHHHHHHHHhhHH
Confidence 467888888888 43 567899999999999999999999954 3333 677899999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 274 eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
+|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++..|++ ...+.+.+
T Consensus 76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~---~~~~~~~~ 133 (144)
T PRK15359 76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD---ASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-14 Score=124.21 Aligned_cols=175 Identities=17% Similarity=0.140 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
...++.+|..++..|++++|+..+++++...| .++ .+++.+|.++...|++++|+..|+++++..+++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-------- 103 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-------- 103 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------
Confidence 35678899999999999999999999999999 665 577999999999999999999999999876653
Q ss_pred hHHHHHHHHHhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCC
Q 017532 251 EVEFRNLVSRNKALIYLVG--------KDYVSAVREYEECIERDYNDIVAI-----------------NNKALCLMYLRD 305 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~--------g~~~eA~~~~~~~l~~~p~~~~~~-----------------~nla~~~~~~g~ 305 (370)
+.. ..+++.+|.+++.. |++++|++.|++++..+|++..+. .++|..+...|+
T Consensus 104 -~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 104 -PDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred -Cch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222 34678899999876 899999999999999999986432 367888999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 306 LSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 306 ~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+++|+..+++++...|+......++++++.+|....+ .++...+++.+....||
T Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 182 YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQDAAAVLGANYPD 235 (235)
T ss_pred hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 9999999999999988754447889999999986444 67777788877766654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=129.09 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=184.0
Q ss_pred hhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-----HH-HH-hhHhhHHhHHHHHHHH------HHHHHHHHHHHHh
Q 017532 120 FSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-----LA-RK-LAEKLEESVKSWKKRE------IFVLNCLIGYHLS 186 (370)
Q Consensus 120 ~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-----~~-~~-~~~~~~~~~~~~~~~~------~~~~~~la~~~~~ 186 (370)
|.+..-.++++..+|-+.+|...+...+...+-. +. .+ ..+++..+...+.+.+ ...+...+.++..
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3455566778888999999999887766442211 00 00 1233445556665555 4456678889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
++++++|.++|+.+++.+| .+.+++..+|..|+..|+++-|+.+|.+.+++.-. .| +.+.|+|.|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~---------sp----eLf~NigLCC 368 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ---------SP----ELFCNIGLCC 368 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC---------Ch----HHHhhHHHHH
Confidence 9999999999999999999 99999999999999999999999999999987433 33 4588999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC
Q 017532 267 LVGKDYVSAVREYEECIERD--YN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~--p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~ 343 (370)
+..++++-++..|++++..- |. -..+|+|+|-+....|++.-|...|+-++..+|++ ...+.||+.+-. .++
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h---~ealnNLavL~~--r~G 443 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH---GEALNNLAVLAA--RSG 443 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch---HHHHHhHHHHHh--hcC
Confidence 99999999999999999764 33 34799999999999999999999999999999988 889999998854 456
Q ss_pred chhhHHHHHHHHhhhCCCCCCCc
Q 017532 344 HSDIKRTLSSWIGRVAPDDFDSS 366 (370)
Q Consensus 344 ~~~~~~~ll~~~~~~~~d~~~~~ 366 (370)
+-+.++.++..-..+.|+.+++.
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred chHHHHHHHHHhhhhCccccccc
Confidence 67888889888888999988774
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-14 Score=130.17 Aligned_cols=161 Identities=22% Similarity=0.297 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc----
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF---- 244 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~---- 244 (370)
.-+++.+.+|+.+|.+.+.+..+.++++.+. +.+ ...+..+|..+..+|+++.|+.+|++++.-.+....
T Consensus 258 t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~l 337 (539)
T KOG0548|consen 258 TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKL 337 (539)
T ss_pred HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHH
Confidence 3455667777777777777777777776654 111 123345677888899999999999997754332100
Q ss_pred ----------cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 245 ----------EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 245 ----------~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
.+..+.+|+. +.-....|..+|..|+|.+|+.+|.++|..+|+|+.+|.|+|.||.++|.+..|++.++
T Consensus 338 k~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 338 KEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1122556766 66677789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 315 NALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
.+++++|++ ....+--+.++..
T Consensus 417 ~~ieL~p~~---~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 417 KCIELDPNF---IKAYLRKGAALRA 438 (539)
T ss_pred HHHhcCchH---HHHHHHHHHHHHH
Confidence 999999987 4444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=129.63 Aligned_cols=257 Identities=16% Similarity=0.132 Sum_probs=194.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc--ccchhHHHHHHHcCcccCCccchHHHHHHHH
Q 017532 70 LAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS--MVPFSLRWLYAVLPIKLSNRQVGLDRFYELL 147 (370)
Q Consensus 70 ~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll 147 (370)
.++.+..+...|+|+.|...++...+.-. ...|. .+--.+....+.++..++++.+|+..|.+++
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~-------------k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILE-------------KTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH-------------HccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44445678999999999999988854310 00010 1111111124566688899999999999988
Q ss_pred HHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CC---HHHHHHHHHHHH
Q 017532 148 DFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG----LD---PILVSKLGFIQM 220 (370)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~---~~~~~~lg~~~~ 220 (370)
........... .+.+.++.+|+..|++.|+|++|..++++++++... .+ ...+..++.++.
T Consensus 269 ~i~e~~~G~~h------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 269 TIREEVFGEDH------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHhcCCCC------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 66555443221 123578889999999999999999999999876541 22 245688899999
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--------YNDIVA 292 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--------p~~~~~ 292 (370)
.++++++|..++++++++..+... ..++.. ...+.++|.+|+.+|+|.||.+.|++++.+. +.....
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g----~~~~~~-a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPG----EDNVNL-AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhcc----ccchHH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 999999999999999988764322 445566 7889999999999999999999999999873 344578
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALER----VPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
++++|..+...+++.+|...|++++.+ .|+.........||+.+|.- .+..+++.++.+.+.++
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~--~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA--QGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cccHHHHHHHHHHHHHH
Confidence 999999999999999999999998765 34443346778899999984 55589999999888654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=117.67 Aligned_cols=124 Identities=11% Similarity=0.105 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.++.++++..++++++.+| ++...|..+|.++...|++++|+..|++++++.+++ ..++.++|.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-------------AELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHH
Confidence 5778999999999999999 999999999999999999999999999999775542 56678899875
Q ss_pred -HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 267 -LVGKD--YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 267 -~~~g~--~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
...|+ +++|...++++++.+|+++.+++++|.++...|++++|+..|+++++..|...
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 67788 59999999999999999999999999999999999999999999999998753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-13 Score=122.79 Aligned_cols=237 Identities=11% Similarity=-0.022 Sum_probs=161.7
Q ss_pred CChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchh
Q 017532 42 GSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFS 121 (370)
Q Consensus 42 g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (370)
+..+.++..+.+++... ..+|.+...++..++..+..+|++++|...++++..+++... ..
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~------------------~a 100 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA------------------DA 100 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH------------------HH
Confidence 45566776666665432 234544344555678899999999999999999977664111 11
Q ss_pred HHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017532 122 LRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESI 201 (370)
Q Consensus 122 ~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 201 (370)
....+.+....|++++|+..+...++..+.. ..++.++|.++...|++++|+..+++++
T Consensus 101 -~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------------------~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 101 -YNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------------NYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1223444577899999998887776433221 1456789999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 017532 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEE 281 (370)
Q Consensus 202 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 281 (370)
+.+| +++..... ..+....+++++|+..|+++.... +++. | ..+.+.+..|++.++ +.++.
T Consensus 160 ~~~P-~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~-----------~~~~----~-~~~~~~~~lg~~~~~-~~~~~ 220 (296)
T PRK11189 160 QDDP-NDPYRALW-LYLAESKLDPKQAKENLKQRYEKL-----------DKEQ----W-GWNIVEFYLGKISEE-TLMER 220 (296)
T ss_pred HhCC-CCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhC-----------Cccc----c-HHHHHHHHccCCCHH-HHHHH
Confidence 9999 77632222 234456789999999998876321 1111 1 135666667776544 23333
Q ss_pred H-------HhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Q 017532 282 C-------IERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT-VALNETLVVNLCSMY 337 (370)
Q Consensus 282 ~-------l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~~~nl~~ly 337 (370)
+ ++++|....+|+++|.++...|++++|+.+|+++++.+|. +......++.+..+.
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 3 3556777889999999999999999999999999999974 322233344444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=135.63 Aligned_cols=260 Identities=14% Similarity=0.149 Sum_probs=154.6
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
+|++++.......-++..|+|..|+.+|.+++.+ +|.-......-.+.|+.++|+.+.|...|.++..|++..+
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i----np~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v-- 233 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRI----NPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV-- 233 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhc----CcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH--
Confidence 7788888888888888999999999999887544 3431111111125678899999999999988877774111
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
+.+ +.++.+-....+. +.+...+....+....... -+.++..|++.
T Consensus 234 -----------~al------v~L~~~~l~~~d~----~s~~~~~~ll~~ay~~n~~-------------nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 234 -----------SAL------VALGEVDLNFNDS----DSYKKGVQLLQRAYKENNE-------------NPVALNHLANH 279 (1018)
T ss_pred -----------HHH------HHHHHHHHHccch----HHHHHHHHHHHHHHhhcCC-------------CcHHHHHHHHH
Confidence 000 0111110111111 1111111111111111000 02455666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
++-.|+|..+..+...++.... ..+ ..++.+|+.|..+|++++|..+|.++....+++ + ...+.
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~-~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----------~-~l~~~ 346 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTE-NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----------F-VLPLV 346 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----------c-ccccc
Confidence 7777777777777777666543 222 346677777777777777777777776432221 1 34455
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR----DLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g----~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.+|..++..|++++|+.+|++++...|++..+...+|..|...+ ..+.|..++.++++..|.+ ...+.+++.+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d---~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD---SEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc---HHHHHHHHHH
Confidence 66777777777777777777777777777777777776666654 5667777777777776665 6666777777
Q ss_pred HHh
Q 017532 337 YEL 339 (370)
Q Consensus 337 yel 339 (370)
||.
T Consensus 424 ~e~ 426 (1018)
T KOG2002|consen 424 LEQ 426 (1018)
T ss_pred HHh
Confidence 763
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=131.97 Aligned_cols=289 Identities=10% Similarity=-0.025 Sum_probs=207.2
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.|+......+..+++.|++++|.++++++. .| +..+ |+..+.++++.|++++|...|+.|....-
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~-~~vt-~n~li~~y~~~g~~~eA~~lf~~M~~~g~------- 321 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP------EK-TTVA-WNSMLAGYALHGYSEEALCLYYEMRDSGV------- 321 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CC-ChhH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------
Confidence 345555667889999999999999998863 12 2334 44458889999999999999999843210
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--------HHHHHHH-hhHhhHHhHHHHHHHH---
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--------REKLARK-LAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--------~~~~~~~-~~~~~~~~~~~~~~~~--- 173 (370)
.+..+.+..+...+ ...|..++|...+..+.+.. ...+... +.+..+++.+++.+..
T Consensus 322 ----------~pd~~t~~~ll~a~-~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d 390 (697)
T PLN03081 322 ----------SIDQFTFSIMIRIF-SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390 (697)
T ss_pred ----------CCCHHHHHHHHHHH-HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 11222333333222 66788888887776665431 1111111 2234455666665543
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.++..|.+.|+.++|+.+|+++.+.+...+..++..+...+.+.|++++|.++|+.+.+.. ...|+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---------g~~p~ 461 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH---------RIKPR 461 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---------CCCCC
Confidence 567889999999999999999999999987766788889999999999999999999999997421 22343
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
...+..+...+.+.|++++|.+.++++- . ..+..+|+.+..++...|+++.|...++++++..|+. ......|
T Consensus 462 --~~~y~~li~~l~r~G~~~eA~~~~~~~~-~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~---~~~y~~L 534 (697)
T PLN03081 462 --AMHYACMIELLGREGLLDEAYAMIRRAP-F-KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK---LNNYVVL 534 (697)
T ss_pred --ccchHhHHHHHHhcCCHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC---CcchHHH
Confidence 2345667888889999999999988752 2 3456789999999999999999999999999999976 3445556
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhh
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
..+|. ..+.-+...++.+...+.
T Consensus 535 ~~~y~--~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 535 LNLYN--SSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHH--hCCCHHHHHHHHHHHHHc
Confidence 66665 345567777777766543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-13 Score=121.22 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|.++...|++++|+..|+++++.+| +++.+++.+|.++...|++++|+..|++++++.|+ .
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------------~ 131 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------------Y 131 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------C
Confidence 5678899999999999999999999999999 99999999999999999999999999999976444 3
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..++.++|.++...|++++|++.|+++++.+|+++.....+ ......+++++|+..+++++..
T Consensus 132 -~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 132 -NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence 66789999999999999999999999999999998422222 2234567889999999776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=119.27 Aligned_cols=132 Identities=14% Similarity=-0.001 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..++..+|.-|+++++-..|+..|+++++++| .|..+|+.||+.|.-++.+.=|.-+|++|..+.|.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------------ 430 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------------ 430 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------------
Confidence 56778999999999999999999999999999 99999999999999999999999999999965444
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
. ...|..+|.||.+.++.++|+++|.+++..+..+..++..+|.++.+.++.++|..+|++-++.
T Consensus 431 D-sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 431 D-SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred c-hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 6678899999999999999999999999998888999999999999999999999999999883
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=131.47 Aligned_cols=226 Identities=14% Similarity=0.110 Sum_probs=107.4
Q ss_pred HHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCC
Q 017532 36 QDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTG 115 (370)
Q Consensus 36 ~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 115 (370)
......|+++.|+..|++++..+ |.+.... .+...+...+++++|...+...-... +
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~----~~~~~~~--~~l~~l~~~~~~~~A~~~~~~~~~~~-----------------~ 108 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASD----KANPQDY--ERLIQLLQDGDPEEALKLAEKAYERD-----------------G 108 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc----ccccccc--cccccccccccccccccccccccccc-----------------c
Confidence 34456899999999999976543 3321222 22344468899999998775542111 0
Q ss_pred cccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017532 116 SMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFD 195 (370)
Q Consensus 116 ~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 195 (370)
... .+.. ...+....|+..++.+.+..+..... .... ..++..+|.++.+.|++++|+.
T Consensus 109 ~~~--~l~~-~l~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~--------~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 109 DPR--YLLS-ALQLYYRLGDYDEAEELLEKLEELPA----------APDS--------ARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------H-HHHTT-HHHHHHHHHHHHH-T-------------T---------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccc--hhhH-HHHHHHHHhHHHHHHHHHHHHHhccC----------CCCC--------HHHHHHHHHHHHHcCCHHHHHH
Confidence 100 1111 11222445666666655555431100 0011 2456688999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH
Q 017532 196 LMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA 275 (370)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA 275 (370)
.|+++++.+| +++.+...++.++...|+.+++.+.++......+.+ ...+..+|.+++..|++++|
T Consensus 168 ~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 168 DYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-------------PDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-------------CCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-------------HHHHHHHHHHhccccccccc
Confidence 9999999999 999999999999999999999888888887654332 23456689999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 276 VREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 276 ~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+.+|++++..+|+|+..+.++|.++...|+.++|..+..++++.
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999988753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=110.58 Aligned_cols=113 Identities=7% Similarity=-0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
++.+|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..|++++++.++ . .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~------------~-~ 92 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS------------H-P 92 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------------C-c
Confidence 45678899999999999999999999999 99999999999999999999999999999975443 2 6
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL 303 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~ 303 (370)
.++.++|.++...|++++|+..|++++..+|+++..+.+++.+....
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999877654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-12 Score=123.00 Aligned_cols=256 Identities=15% Similarity=0.084 Sum_probs=188.1
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccc----cCCchHHHHHH-HHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSL----LTQPHHHLTYL-AYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~----~~~P~~~~~~~-~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
.......+|+|+.|+.+++.+++.-- ...|. +... ..-+..|..+++|++|...++++..+....
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-------- 274 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-------- 274 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh--------
Confidence 66778899999999999999876511 12332 2222 223567999999999999999986543211
Q ss_pred CCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 188 (370)
++... ..+...+.- .+.+++..|++.+|...+..++.......... ..+....+.+++.++..++
T Consensus 275 -~G~~h-~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~------------~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 275 -FGEDH-PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGAS------------HPEVAAQLSELAAILQSMN 339 (508)
T ss_pred -cCCCC-HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccC------------hHHHHHHHHHHHHHHHHhc
Confidence 11111 112222221 24556889999999999888877666532111 1123456778999999999
Q ss_pred CHHHHHHHHHHHHhCCC----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 189 EYNVCFDLMNESIGRGN----GLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~----~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
++++|+.++++++++.. .++ +.+..++|.+|..+|++++|.++|++++.+.+.... ..++.. ...+.+
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~----~~~~~~-~~~l~~ 414 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG----KKDYGV-GKPLNQ 414 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc----CcChhh-hHHHHH
Confidence 99999999999976542 133 356789999999999999999999999998766422 335554 667788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER-------DYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~-------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+|..+...+++.+|...|.+++.+ +|+...++.|||.+|..+|++++|+++.++++..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999998776 3455678999999999999999999999999843
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-12 Score=109.43 Aligned_cols=273 Identities=16% Similarity=0.138 Sum_probs=191.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
+.+.+|.++-....+.-+.+-++||+++-.+.+ .+|....+.+++ +..+-+-|..+.|+..-+.+.+ +|++
T Consensus 31 qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~----~d~~t~e~~ltL-GnLfRsRGEvDRAIRiHQ~L~~--spdl-- 101 (389)
T COG2956 31 QANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQ----EDPETFEAHLTL-GNLFRSRGEVDRAIRIHQTLLE--SPDL-- 101 (389)
T ss_pred HHhhccHHHHhHHHHHhhcCcchHHHHHHHHHh----cCchhhHHHHHH-HHHHHhcchHHHHHHHHHHHhc--CCCC--
Confidence 446677766667777778899999999988755 356644444554 6778888999999998877742 2332
Q ss_pred cccCCCCCCCCCcccchhHHHHH----HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHH
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLY----AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNC 179 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~----a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (370)
+|.-|++. ++=+...|-.+.|.+.|..+....... ..++-.
T Consensus 102 ---------------T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa--------------------~~Alqq 146 (389)
T COG2956 102 ---------------TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA--------------------EGALQQ 146 (389)
T ss_pred ---------------chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh--------------------HHHHHH
Confidence 22333321 111244566666666555543211110 123346
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLD-----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
|..+|...++|++|+..-+++.+.++ .. +..+..++..+....+++.|...+.+|++. +|..
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------------~~~c 213 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------------DKKC 213 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------------Cccc
Confidence 77888899999999999999988887 32 234567888888899999999999999953 4444
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
+.+.+.+|.+.+..|+|+.|++.++.+++.||... .+...+..||...|+.++.+..+.++++..+.. .+..-+
T Consensus 214 -vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~----~~~l~l 288 (389)
T COG2956 214 -VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA----DAELML 288 (389)
T ss_pred -eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc----cHHHHH
Confidence 66777899999999999999999999999998865 678888899999999999999999999988874 344444
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
+.+.+. .++..++...+-+++.+.|
T Consensus 289 ~~lie~-~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 289 ADLIEL-QEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred HHHHHH-hhChHHHHHHHHHHHhhCC
Confidence 454443 3455555566666666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-13 Score=107.27 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=106.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e 274 (370)
..+++++..+| .+......+|..+...|++++|+..|++++.+.+. . ..++.++|.+++..|++++
T Consensus 4 ~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------------~-~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 4 ATLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------------N-SRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hhHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------------c-HHHHHHHHHHHHHHHHHHH
Confidence 46788999999 88899999999999999999999999999865333 2 5678889999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+..|++++..+|.++..++++|.++...|++++|+..++++++.+|+.
T Consensus 70 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 70 AIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999986
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-13 Score=126.27 Aligned_cols=244 Identities=15% Similarity=0.107 Sum_probs=177.0
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccc
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYE 104 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~ 104 (370)
-.|.|.-+.+...+++.|+..+|+=.++.++. .+|.+...|.+ .+......++=..|+..+++..++++...
T Consensus 282 ~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVk----qdP~haeAW~~-LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--- 353 (579)
T KOG1125|consen 282 YIDHPDPFKEGCNLMKNGDLSEAALAFEAAVK----QDPQHAEAWQK-LGITQAENENEQNAISALRRCLELDPTNL--- 353 (579)
T ss_pred ccCCCChHHHHHHHHhcCCchHHHHHHHHHHh----hChHHHHHHHH-hhhHhhhccchHHHHHHHHHHHhcCCccH---
Confidence 47888899999999999999999988888654 47986555544 47788888888889999999988875221
Q ss_pred ccCCCCCCCCCcccchhHHHH--HHHcCcccCCccchHHHHHHHHHHHHHHHHHH--hhHhhHHhHHHHHHHHHHHHHHH
Q 017532 105 TYPHIYPNRTGSMVPFSLRWL--YAVLPIKLSNRQVGLDRFYELLDFVREKLARK--LAEKLEESVKSWKKREIFVLNCL 180 (370)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~r~l--~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 180 (370)
.++ +|..+...|.-.+|+..|+.=+..-....... ......... +
T Consensus 354 ------------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~---~---------- 402 (579)
T KOG1125|consen 354 ------------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT---K---------- 402 (579)
T ss_pred ------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC---c----------
Confidence 222 22234556666777777766543322211100 000000000 0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
.+.....+..-..+|-.+....| ..++++...||-+|.-.|+|++|+.+|+.|+.. +|+. ...|
T Consensus 403 --s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------------~Pnd-~~lW 467 (579)
T KOG1125|consen 403 --SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------------KPND-YLLW 467 (579)
T ss_pred --CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------------CCch-HHHH
Confidence 00000111222344444544445 368899999999999999999999999999954 4555 7789
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.-+|-++....+.+|||..|++++++.|....+++|+|++++.+|-|++|+++|-.|+.+.++
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-12 Score=126.00 Aligned_cols=188 Identities=12% Similarity=-0.063 Sum_probs=149.4
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH-----hhHhhHHhHHHHHH--HHHHHHHHHHHHHHhcCC
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK-----LAEKLEESVKSWKK--REIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~ 189 (370)
+-|..+-.+.+.+ ...|..+++-.++.. ..++.+... ......+....-+. ....++.+||.+..+.|.
T Consensus 26 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 26 SGPTILDLLEAAL-AEPGESEEAGRELLQ---QARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHR 101 (694)
T ss_pred CCcHHHhHHHHHh-cCcccchhHHHHHHH---HHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCC
Confidence 4566666655544 666777776655433 333333221 11112222211111 116889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
+++|...++.+++..| ++..++..++.++.+.+++++|...++++++..++ . ...++.+|.++...
T Consensus 102 ~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------------~-~~~~~~~a~~l~~~ 167 (694)
T PRK15179 102 SDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------------S-AREILLEAKSWDEI 167 (694)
T ss_pred cHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------------C-HHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999965443 3 66788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
|++++|+..|+++++.+|+++.++.++|.++...|+.++|...|++++....+
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999998654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-12 Score=129.57 Aligned_cols=282 Identities=12% Similarity=0.049 Sum_probs=183.1
Q ss_pred CCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 29 VPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 29 ~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
......+..+.+.|+++.|..+...+...|. .|+ ...++..+.++++.|+++.|...|+.+...+.
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~--~~~--~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~---------- 189 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGF--EPD--QYMMNRVLLMHVKCGMLIDARRLFDEMPERNL---------- 189 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--Ccc--hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCe----------
Confidence 3455578888889999999999998887774 354 23334447789999999999999998853211
Q ss_pred CCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--------HHHHH-------------------------
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--------REKLA------------------------- 155 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--------~~~~~------------------------- 155 (370)
+ .+..+...+ ...|++++|++.|.++.... ...+.
T Consensus 190 ---------~--t~n~li~~~-~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 190 ---------A--SWGTIIGGL-VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred ---------e--eHHHHHHHH-HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 1 223333222 55688888888887764320 00000
Q ss_pred ----------HH-hhHhhHHhHHHHHHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 017532 156 ----------RK-LAEKLEESVKSWKKRE---IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ 221 (370)
Q Consensus 156 ----------~~-~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~ 221 (370)
.. +.+..+++.+++.... ..+++.++..|.+.|++++|+.+|+++.+.+...+..++..+...+.+
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 00 1122334444444322 456777778888888888888888888766544566777777778888
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 222 VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 222 ~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
.|++++|.+.++.+.+.. ..|+ ..++..+...|.+.|++++|.+.|+++.+ .|..+|+.+..+|.
T Consensus 338 ~g~~~~a~~i~~~m~~~g----------~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~ 402 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTG----------FPLD--IVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG 402 (697)
T ss_pred ccchHHHHHHHHHHHHhC----------CCCC--eeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 888888888887777531 1121 23345567777788888888888887753 35678888888888
Q ss_pred HhCCHHHHHHHHHHHHHhCCCcchhHHHHHH-HHHHHHhccCCchhhHHHHHHHHh
Q 017532 302 YLRDLSDSIKVLENALERVPTVALNETLVVN-LCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 302 ~~g~~~~A~~~l~~al~~~p~~~~~~~~~~n-l~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
+.|+.++|++.|+++.+....+ +...|+ +...+ .+.+..++...++....
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~P---d~~T~~~ll~a~--~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAP---NHVTFLAVLSAC--RYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHH--hcCCcHHHHHHHHHHHH
Confidence 8899999999998888765443 222222 22222 34455666666666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-11 Score=112.30 Aligned_cols=270 Identities=14% Similarity=0.075 Sum_probs=194.3
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
....-.+.++|+++.||+.++-.-.+. ....+......+.+.-+.+-+++.+|....+...+.+.... +-..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kd--nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~------~a~~ 494 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKD--NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA------AALT 494 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhcc--chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH------HHhh
Confidence 345668999999999998876643222 00111111111212334445788888888888877664221 1111
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH---HHHHHHH-----HhhHhhHHhHHHHHHHH------HHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF---VREKLAR-----KLAEKLEESVKSWKKRE------IFVL 177 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~---~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~ 177 (370)
+++ .+.+..|+.+.|.+.+.+.+.. |.+.+.. ...+.++++...+.+.. ++++
T Consensus 495 nkg-------------n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 495 NKG-------------NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred cCC-------------ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 111 1225678999999998888743 5544421 12334455555554432 7889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++++|-.+.+..+|++++.++...-| .++.+++.||.+|-+.||-..|.+++-..-+..|-+ .+
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-------------ie 627 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-------------IE 627 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-------------hH
Confidence 9999999999999999999999999999 999999999999999999999999887776544332 22
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..-.+|-.|+...-+++|+.+|+++.-+.|+...-....|.|+.++|+|++|...|...-+..|.+...-.++..++.=
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 3334888899999999999999999999999988888999999999999999999999999999874444455555543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-11 Score=117.39 Aligned_cols=271 Identities=8% Similarity=0.018 Sum_probs=171.8
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
..+..|+|..|.+...+..... .+| ..++...+.+-.+.|+++.|...+.++...++..
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~--~~p---~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~---------------- 151 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHA--EQP---VVNYLLAAEAAQQRGDEARANQHLERAAELADND---------------- 151 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcc--cch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc----------------
Confidence 3445799999998877743221 122 2333333444578899999999998886543211
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--------hhHhhHHhHHHHHHHH--------------H
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--------LAEKLEESVKSWKKRE--------------I 174 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------~~~~~~~~~~~~~~~~--------------~ 174 (370)
.+..+++.+++....|++++|+..+..+.+..+...... ..++.+++.+...... .
T Consensus 152 --~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (398)
T PRK10747 152 --QLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ 229 (398)
T ss_pred --hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 012233446677788999999988877764433221000 0111111111111100 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+........+-+......+..-+..+ +++.+...++..+...|+.++|.+.++++++. .-++..
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~-~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----------~~~~~l 298 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTR-HQVALQVAMAEHLIECDDHDTAQQIILDGLKR----------QYDERL 298 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------CCCHHH
Confidence 1111111122222333333444444434445 67888889999999999999999999999852 223332
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
....+.+ ..++.+++++..++.++.+|+++..+..+|.++...|++++|.++|+++++..|++ .....++
T Consensus 299 ----~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----~~~~~La 368 (398)
T PRK10747 299 ----VLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA----YDYAWLA 368 (398)
T ss_pred ----HHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----HHHHHHH
Confidence 2223433 56999999999999999999999999999999999999999999999999999984 4556899
Q ss_pred HHHHhccCCchhhHHHHHH
Q 017532 335 SMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~ 353 (370)
.+++-..+ .++...+-+
T Consensus 369 ~~~~~~g~--~~~A~~~~~ 385 (398)
T PRK10747 369 DALDRLHK--PEEAAAMRR 385 (398)
T ss_pred HHHHHcCC--HHHHHHHHH
Confidence 99985433 455544443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.7e-12 Score=114.10 Aligned_cols=131 Identities=9% Similarity=-0.015 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG- 269 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~- 269 (370)
++++.+++++++.+| .+..+|+..|.++...|++++|+++++++++..+.+ ..+|..+|.+....
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-------------~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-------------NSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-------------hhHHHHHHHHHHhcc
Confidence 678889999999999 999999999999999999999999999999754432 56788899988776
Q ss_pred --CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 270 --KDY----VSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 270 --g~~----~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|.+ ++++++..++|..+|+|..+|+.++.++.. +++..+|++.+.+++..+|.. ..++--|+.+|.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s---~~al~~l~d~~~ 266 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH---VFALSDLLDLLC 266 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc---HHHHHHHHHHHH
Confidence 333 478888899999999999999999999988 456788999999999988876 666777777776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-12 Score=119.23 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=156.1
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
++..+..+....+.|+|++|+..+.++++.+ |.+ .+.+.++++|++++++|++|+...+.-+.+.....|
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~----pdd-~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~----- 81 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIV----PDD-EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF----- 81 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcC----CCc-HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-----
Confidence 3566788999999999999999999976543 664 566777899999999999999766655433221111
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS 187 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (370)
| .=.|++.++++..++|+..+..+-...+ .++...|.++++.
T Consensus 82 ------------~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~-----------------------~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 82 ------------F---FEKAYCEYRLNKLDEALKTLKGLDRLDD-----------------------KLLELRAQVLYRL 123 (652)
T ss_pred ------------h---HHHHHHHHHcccHHHHHHHHhcccccch-----------------------HHHHHHHHHHHHH
Confidence 0 1257788899999999887763211110 1233566677888
Q ss_pred CCHHHHHHHHHHHHhCCC------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGN------------------------------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~------------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
|+|++|+.+|+.+++.+. .++...+++.+.++...|+|.+|++.++++++
T Consensus 124 ~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888888855443 12346678999999999999999999999988
Q ss_pred HhhcCCc--cCC-ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 238 MLNEGKF--EDG-LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 238 l~~~~~~--~~~-~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
++...-. +.. +....++ ..+...++.++..+|+.+||.+.|...+..+|.|.
T Consensus 204 ~~~e~l~~~d~~eEeie~el-~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEEL-NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHhhcccccchhhHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 8765422 111 1222333 56778899999999999999999999999987554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=117.36 Aligned_cols=288 Identities=14% Similarity=0.133 Sum_probs=143.2
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC-CCCcccccCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS-SGYQYETYPHIYPNR 113 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 113 (370)
...+++.|.|+.||+.++.. +.-+|+ ..+.+++ +.|....|.-+.-.+.|.++.++.. ++. +.| ...
T Consensus 283 gvtfiq~gqy~dainsfdh~----m~~~pn-~~a~~nl-~i~~f~i~d~ekmkeaf~kli~ip~~~dd--dky----i~~ 350 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHC----MEEAPN-FIAALNL-IICAFAIGDAEKMKEAFQKLIDIPGEIDD--DKY----IKE 350 (840)
T ss_pred CeeEEecccchhhHhhHHHH----HHhCcc-HHhhhhh-hhhheecCcHHHHHHHHHHHhcCCCCCCc--ccc----cCC
Confidence 34578899999999988885 334576 3445554 6777778888888888999887653 111 000 000
Q ss_pred CCcccchhHHHHHHHc----Ccc--cCCccchHHHHHHHHHHHHHHHHHH-hhHhhHHhHHHHHHH-----HHHHHHHHH
Q 017532 114 TGSMVPFSLRWLYAVL----PIK--LSNRQVGLDRFYELLDFVREKLARK-LAEKLEESVKSWKKR-----EIFVLNCLI 181 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~----~~~--~g~~~~al~~l~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~la 181 (370)
.. .|.. .++...+ ... ..+-..|.+.+-...+...+.+... ..+ .+=.++..+.. ....-.+.+
T Consensus 351 ~d--dp~~-~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g-~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 351 KD--DPDD-NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG-CDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred cC--Ccch-HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc-cHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 00 1111 1111111 000 0011111111111111111110000 000 00000000000 012223455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV--GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
..+++.|+++.|++++.-.-+.+......+-.+|..+++.+ .++..|.++-+.++.+.+-+ ..+.
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn-------------~~a~ 493 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN-------------AAAL 493 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC-------------HHHh
Confidence 56666777777777666554444422333344444444442 24566666666666432221 3445
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
.+.|.+.+..|++++|.+.|++++..+.....+++|.|..+..+|++++|+.+|-+.-.+--++ ..+++.++.+||+
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---~evl~qianiye~ 570 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---AEVLVQIANIYEL 570 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666666666666666666654443333 5666666666666
Q ss_pred ccCCchhhHHHHHHHHh
Q 017532 340 AYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 340 ~~~~~~~~~~~ll~~~~ 356 (370)
..+ ..++.+++-++.
T Consensus 571 led--~aqaie~~~q~~ 585 (840)
T KOG2003|consen 571 LED--PAQAIELLMQAN 585 (840)
T ss_pred hhC--HHHHHHHHHHhc
Confidence 544 344455544443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-12 Score=119.88 Aligned_cols=281 Identities=14% Similarity=0.079 Sum_probs=207.4
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.+++.-......+...++|++-.++++.... .+|- +..++..++.+|..+|+...-.-.-.++.++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle----~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-------- 308 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLE----KDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-------- 308 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHh----hCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhC--------
Confidence 3444455577888999999999999988644 3454 36677778899999999888877777775543
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL 185 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (370)
|. +.++|. .+..+ +...|+..+|-..+.......+ ....++...|..+.
T Consensus 309 -----P~---~a~sW~--aVg~Y-Yl~i~k~seARry~SKat~lD~--------------------~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 309 -----PS---KALSWF--AVGCY-YLMIGKYSEARRYFSKATTLDP--------------------TFGPAWLAFGHSFA 357 (611)
T ss_pred -----CC---CCcchh--hHHHH-HHHhcCcHHHHHHHHHHhhcCc--------------------cccHHHHHHhHHhh
Confidence 22 234442 11111 1344777777665554321111 01244567888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
..|+.++|+..|..+-+.-+ ....-...+|.-|.+.+.+.-|.++|.+|..++|. +| .+...+|.+
T Consensus 358 ~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~---------Dp----lv~~Elgvv 423 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS---------DP----LVLHELGVV 423 (611)
T ss_pred hcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC---------cc----hhhhhhhhe
Confidence 99999999999999999988 54445556699999999999999999999987765 33 456789999
Q ss_pred HHHcCCHHHHHHHHHHHHhh----CCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEECIER----DYN---DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~----~p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
.+..+.|.+|..+|+.++.. .+. -...++|+|-++.+.+++++|+..+++++.+.|.+ ....-.++.+|.
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---~~~~asig~iy~ 500 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---ASTHASIGYIYH 500 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHH
Confidence 99999999999999999843 222 23568999999999999999999999999999998 778888899998
Q ss_pred hccCCchhhHHHHHHHHhhhCCCC-CCCcccc
Q 017532 339 LAYVNHSDIKRTLSSWIGRVAPDD-FDSSCTR 369 (370)
Q Consensus 339 l~~~~~~~~~~~ll~~~~~~~~d~-~~~~~~~ 369 (370)
+..+ -+.+.+.+.+---..|++ +-.+|||
T Consensus 501 llgn--ld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 501 LLGN--LDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HhcC--hHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 7655 555666555554455555 6666665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=103.41 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=97.7
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 199 ESIGRG-NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 199 ~~l~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
.+.... + +.-+.++.+|..+.+.|++++|++.|+....+ +|.+ ..-|+++|.|+..+|+|++|+.
T Consensus 25 ~l~~~~~~-~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------------Dp~~-~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 25 MLLDDDVT-QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------------DAWS-FDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHCCChH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------Cccc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 344455 5 66778899999999999999999999999854 5555 7789999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 278 EYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 278 ~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
.|.+++.++|+++.++.|.|+|++..|+.+.|++.|+.++...
T Consensus 91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999886
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-12 Score=111.27 Aligned_cols=173 Identities=13% Similarity=0.028 Sum_probs=134.6
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++.+|+..+.+++...+... | ...+++.+|.++...|++++|+..|+++++..|
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--------------~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRYPFSP--------------Y---AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCch--------------h---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 34444677899999888877654332110 0 124567899999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhcCCccCCccch---------HHHHHHHHHhHHHH
Q 017532 206 GLDPI---LVSKLGFIQMQV--------GDLEGAKKSFNRVEEMLNEGKFEDGLLSE---------VEFRNLVSRNKALI 265 (370)
Q Consensus 206 ~~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~---------p~~~~~~~~~~g~~ 265 (370)
+++. +++.+|.++.+. |++++|++.|+++++..+++.. ... ... ......+|.+
T Consensus 102 -~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~~~~-~~~~~~~a~~ 175 (235)
T TIGR03302 102 -NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLRNRL-AGKELYVARF 175 (235)
T ss_pred -CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6654 688999999886 8999999999999987665311 000 000 1123468999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 266 YLVGKDYVSAVREYEECIERDYND---IVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~---~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
++..|++.+|+..|++++...|++ +.+++++|.++..+|++++|+++++.+....|
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999997654 58999999999999999999999988877666
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-10 Score=111.12 Aligned_cols=280 Identities=8% Similarity=-0.028 Sum_probs=175.0
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
........|+|..|.+.+.++... .|.. ...+...+.+..+.|+++.|...+..+....+ +.
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~----~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p-------------~~ 151 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADH----AAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAG-------------ND 151 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhc----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------cC
Confidence 344566788999998888776433 2432 33444456677788999999988888743221 10
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--------hhHhhHHhHHHHHHHH----------HH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--------LAEKLEESVKSWKKRE----------IF 175 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------~~~~~~~~~~~~~~~~----------~~ 175 (370)
....++..+++....|+.++|+..+..+.+..+...... ..++.+++.+...... ..
T Consensus 152 -----~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 152 -----NILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred -----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 012344456666778888888888877765533221100 1111111111111111 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
........++..+..+++...+.++....|. +++.++..+|..+...|++++|.+.++++++..+++ +
T Consensus 227 l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---------~ 297 (409)
T TIGR00540 227 LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---------R 297 (409)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---------c
Confidence 1111111223334445555677777666662 477888889999999999999999999999755442 1
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCcchhHH
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI--VAINNKALCLMYLRDLSDSIKVLE--NALERVPTVALNET 328 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~--~~~~nla~~~~~~g~~~~A~~~l~--~al~~~p~~~~~~~ 328 (370)
.. . .........+..++.+++++.+++.++.+|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++ +.
T Consensus 298 ~~-~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~---~~ 372 (409)
T TIGR00540 298 AI-S-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA---ND 372 (409)
T ss_pred cc-h-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH---HH
Confidence 00 0 012244444566888899999999999999999 888899999999999999999999 577788875 33
Q ss_pred HHHHHHHHHHhccCCchhhHHHHHH
Q 017532 329 LVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 329 ~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
...++.+++...+ .+++..+-+
T Consensus 373 -~~~La~ll~~~g~--~~~A~~~~~ 394 (409)
T TIGR00540 373 -LAMAADAFDQAGD--KAEAAAMRQ 394 (409)
T ss_pred -HHHHHHHHHHcCC--HHHHHHHHH
Confidence 5588888875433 444444433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-11 Score=124.84 Aligned_cols=250 Identities=12% Similarity=0.040 Sum_probs=126.0
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHH---------------------------------HHHHHH
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH---------------------------------LTYLAY 72 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~---------------------------------~~~~~~ 72 (370)
.|+......+..+++.|++++|+++++++...+. .|+.. ...++.
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~--~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV--SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566666778888888888888888888766553 23310 111222
Q ss_pred HHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH
Q 017532 73 NTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE 152 (370)
Q Consensus 73 ~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~ 152 (370)
.+..|++.|++++|.+.|+.+.+.+ .+.| ..+...+ ...|+..+|+..+.++......
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d-------------------~vs~--~~mi~~~-~~~g~~~eA~~lf~~m~~~~~p 487 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKD-------------------VISW--TSIIAGL-RLNNRCFEALIFFRQMLLTLKP 487 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCC-------------------eeeH--HHHHHHH-HHCCCHHHHHHHHHHHHhCCCC
Confidence 2455677777777777777764321 1222 2222222 5678888888888777532111
Q ss_pred H-------HHHH-hhHhhHHhHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017532 153 K-------LARK-LAEKLEESVKSWKKRE-------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGF 217 (370)
Q Consensus 153 ~-------~~~~-~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~ 217 (370)
. +... ..+..+...++..... ..+.+.+...|.+.|+.++|...|+.+ + .+..+|+.+..
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~-~d~~s~n~lI~ 562 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E-KDVVSWNILLT 562 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C-CChhhHHHHHH
Confidence 1 0000 0011111111111111 223344555555566666666555554 2 44555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHH
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINN 295 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~n 295 (370)
.|.+.|+.++|++.|+++.+. ...|+..+ +..+-..+...|+.++|.++|+.+.+.. ..+...|+.
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~----------g~~Pd~~T--~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVES----------GVNPDEVT--FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHc----------CCCCCccc--HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 666666666666666655531 11222111 1112223445555556655555555322 223445555
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 017532 296 KALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 296 la~~~~~~g~~~~A~~~l~~a 316 (370)
+..++.+.|++++|.+.++++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHC
Confidence 555555555555555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=112.14 Aligned_cols=147 Identities=9% Similarity=0.040 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSK-EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL--EGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
+++.++.++...| ++++++..+++++..+| .+..+|+..+.+..+.|+. ++++.++++++++.+
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp------------ 139 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA------------ 139 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc------------
Confidence 4455666777777 68999999999999999 9999999999999999874 788999999996544
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHhCCCcch
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL---RDL----SDSIKVLENALERVPTVAL 325 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~---g~~----~~A~~~l~~al~~~p~~~~ 325 (370)
.. ..+|.++|.++...|++++|++.+.++|+.+|.|..+|++++.++... |++ ++++++..++|..+|++
T Consensus 140 kN-y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N-- 216 (320)
T PLN02789 140 KN-YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN-- 216 (320)
T ss_pred cc-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC--
Confidence 33 778999999999999999999999999999999999999999988776 333 57899999999999998
Q ss_pred hHHHHHHHHHHHHh
Q 017532 326 NETLVVNLCSMYEL 339 (370)
Q Consensus 326 ~~~~~~nl~~lyel 339 (370)
.+++.++.-++..
T Consensus 217 -~SaW~Yl~~ll~~ 229 (320)
T PLN02789 217 -ESPWRYLRGLFKD 229 (320)
T ss_pred -cCHHHHHHHHHhc
Confidence 8888888888764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-10 Score=114.78 Aligned_cols=189 Identities=9% Similarity=-0.082 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-----LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE--- 245 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~--- 245 (370)
..+....|..|+..++.++|+.+|++++...+. .+......|...++..|++++|..++++..+..|-.-.+
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 346667888899999999999999999876530 223334677888999999999999999998643310000
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.....+|+. ......++.++...|++.+|.+.+++.+...|.|..+...+|.++...|.+.+|.+.++.+..++|++
T Consensus 407 ~~~~pn~d~-~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~-- 483 (822)
T PRK14574 407 PGKEPNDDW-IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS-- 483 (822)
T ss_pred CCCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc--
Confidence 011346667 67788899999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCCccc
Q 017532 326 NETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCT 368 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~~~ 368 (370)
..+.+.++..+.- -+.-.+...++..+....||+..++-|
T Consensus 484 -~~~~~~~~~~al~--l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 484 -LILERAQAETAMA--LQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred -HHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 6777777766653 344677778888888888887766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-11 Score=112.66 Aligned_cols=252 Identities=12% Similarity=0.141 Sum_probs=178.2
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.-..+...+.|+++.|...+.++... .|.+.+......+..++..|+++.|...++.+....+
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P------------- 184 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP------------- 184 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------
Confidence 34566677889999999999997543 3554333323346678889999999999999865432
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH---HHHHH------------HHHh-hHhhHHhHHHHHHH---
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF---VREKL------------ARKL-AEKLEESVKSWKKR--- 172 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~---~~~~~------------~~~~-~~~~~~~~~~~~~~--- 172 (370)
+ .+..++ +.+.+....|+++++.+.+..+.+. ..... .... ........+.|...
T Consensus 185 ~-----~~~~l~-ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 185 R-----HKEVLK-LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred C-----CHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 1 122223 3445557889999888888776633 01100 0000 00112333445432
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 173 ---EIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV--SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 173 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
...++..++..+...|++++|+..++++++..| ++.... .......+..++.+.+++.++++++..|+
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~------ 331 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD------ 331 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC------
Confidence 257888999999999999999999999999999 666421 33344455678899999999999965443
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE--ECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~--~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+|+ ......+|.+++..|++++|.++|+ ++++.+|++.. +..+|.++...|+.++|.+++++++..
T Consensus 332 ---~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 332 ---KPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred ---Chh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 441 1456679999999999999999999 57778887666 559999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-11 Score=117.45 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=142.5
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLS---SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
++..||.+-+. ...+..+...+.++...++ .+|.+++.|+.-++..|+++.+.+....++... ...+
T Consensus 235 alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---------~~~~ 304 (1018)
T KOG2002|consen 235 ALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---------ENKS 304 (1018)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---------hhhH
Confidence 33444444333 3567889999999999999 999999999999999999999999999998532 1233
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND-IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
.. +...+.+|.++..+|+|++|..+|.+++..+|++ ...++-+|..+.+.|++..|+.+|+++++..|+. .....
T Consensus 305 ~~-aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~---~etm~ 380 (1018)
T KOG2002|consen 305 IK-AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN---YETMK 380 (1018)
T ss_pred HH-HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch---HHHHH
Confidence 33 7889999999999999999999999999999998 6788899999999999999999999999999998 78889
Q ss_pred HHHHHHHhccC--CchhhHHHHHHHHhhhCCCC
Q 017532 332 NLCSMYELAYV--NHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 332 nl~~lyel~~~--~~~~~~~~ll~~~~~~~~d~ 362 (370)
-|+.+|..... ...++...+++++-+..|++
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 99999985521 12356666777666665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=110.69 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
+-+-.-|+-+++.++|++|+..|.++|+++| .++..+.+.+.+|.++|.++.|++-++.+++ .||..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~------------iDp~y 148 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALS------------IDPHY 148 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHh------------cChHH
Confidence 3344667788889999999999999999999 9999999999999999999999999999994 57777
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH---HHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS---DSIKVLENA 316 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~---~A~~~l~~a 316 (370)
..+|.-+|.+|..+|++++|++.|+++|+++|++.....||..+-.+.+... .++..++-+
T Consensus 149 -skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 149 -SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA 212 (304)
T ss_pred -HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence 8899999999999999999999999999999999999999999888888777 444444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-12 Score=112.63 Aligned_cols=262 Identities=19% Similarity=0.222 Sum_probs=166.7
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
=.++..+=.|+|..+++-++ ... .+|........+...+++.+|+++..+.++..-. +|.
T Consensus 6 f~vrn~fy~G~Y~~~i~e~~-~~~----~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~---~~~------------ 65 (290)
T PF04733_consen 6 FTVRNQFYLGNYQQCINEAS-LKS----FSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS---SPE------------ 65 (290)
T ss_dssp HHHHHHHCTT-HHHHCHHHH-CHT----STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS---SCC------------
T ss_pred HHHHHHHHhhhHHHHHHHhh-ccC----CCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC---Chh------------
Confidence 35778888999999997665 211 2344334455566789999999998887774432 111
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
.. ..+++...+ ...++.+..+..+.+.+.... . ..- ..+....|.++...|++++
T Consensus 66 ----l~--av~~la~y~-~~~~~~e~~l~~l~~~~~~~~--------~---~~~-------~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 66 ----LQ--AVRLLAEYL-SSPSDKESALEELKELLADQA--------G---ESN-------EIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp ----CH--HHHHHHHHH-CTSTTHHCHHHHHHHCCCTS--------------CH-------HHHHHHHHHHHCCCCHHHH
T ss_pred ----HH--HHHHHHHHH-hCccchHHHHHHHHHHHHhcc--------c---ccc-------HHHHHHHHHHHHHcCCHHH
Confidence 11 224333322 222222333333322210000 0 000 0122345567778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC--
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-- 270 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-- 270 (370)
|+..+++. .+.........+++.+|+++.|.+.++.+.+... |. .......+.+.+..|
T Consensus 121 AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e----------D~---~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 121 ALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE----------DS---ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC----------CH---HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------cH---HHHHHHHHHHHHHhCch
Confidence 99888753 5567778888999999999999999988874321 21 222233444555555
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHH
Q 017532 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRT 350 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ 350 (370)
++.+|.-.|+++.+..+.++..++.+|+|++.+|++++|.+.+++++..+|++ ..++.|+.++..+... ..+...+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~---~d~LaNliv~~~~~gk-~~~~~~~ 257 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND---PDTLANLIVCSLHLGK-PTEAAER 257 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH---HHHHHHHHHHHHHTT--TCHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhCC-ChhHHHH
Confidence 68999999999888878889999999999999999999999999999999987 7889999888775433 3366677
Q ss_pred HHHHHhhhCCCC
Q 017532 351 LSSWIGRVAPDD 362 (370)
Q Consensus 351 ll~~~~~~~~d~ 362 (370)
++.++....|++
T Consensus 258 ~l~qL~~~~p~h 269 (290)
T PF04733_consen 258 YLSQLKQSNPNH 269 (290)
T ss_dssp HHHHCHHHTTTS
T ss_pred HHHHHHHhCCCC
Confidence 777888777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-12 Score=117.43 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=151.6
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
+..|+..+|.-.|+..+...++ .++.| ..||.+....++-..||..++++++++| ++-.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~------------haeAW--------~~LG~~qaENE~E~~ai~AL~rcl~LdP-~Nle 354 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ------------HAEAW--------QKLGITQAENENEQNAISALRRCLELDP-TNLE 354 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH------------HHHHH--------HHhhhHhhhccchHHHHHHHHHHHhcCC-ccHH
Confidence 5556666666666555433332 34455 4689999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc--------c--------------------------CCccchHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF--------E--------------------------DGLLSEVEFRN 256 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~--------~--------------------------~~~~~~p~~~~ 256 (370)
++..||-.|...|.-.+|.+++.+=++..+.-.. . .+...+|+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd--- 431 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD--- 431 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh---
Confidence 9999999999999999999999885433211000 0 01124444
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+...+|.+|...|+|+.|+.+|+.+|..+|+|...||.||.++....+..+||+.|.+|+++.|.+ ..+.|||+.-
T Consensus 432 -vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS 507 (579)
T KOG1125|consen 432 -VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGIS 507 (579)
T ss_pred -HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhh
Confidence 467799999999999999999999999999999999999999999999999999999999999998 7788888876
Q ss_pred HHhccCCchhhHHHHHHHH
Q 017532 337 YELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~ 355 (370)
|--.+. -+++...++..+
T Consensus 508 ~mNlG~-ykEA~~hlL~AL 525 (579)
T KOG1125|consen 508 CMNLGA-YKEAVKHLLEAL 525 (579)
T ss_pred hhhhhh-HHHHHHHHHHHH
Confidence 642222 124445555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-10 Score=112.87 Aligned_cols=288 Identities=17% Similarity=0.151 Sum_probs=188.4
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHh-----------------------------
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALM----------------------------- 78 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~----------------------------- 78 (370)
|.+.......++..|++++|..++..++.+. |....+|.++ +..+-
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd----p~~~~ay~tL-~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD----PRNPIAYYTL-GEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----ccchhhHHHH-HHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3344556667788899999999999987664 4333333332 33444
Q ss_pred -----hhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 79 -----KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 79 -----~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
++|++++|.-.+.++...+++++ .+..=.+.+....|+...|++.+..++..+++.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~-------------------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNW-------------------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcch-------------------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 44555555555555544433221 111112334456688888888888887665511
Q ss_pred ----H----HH---H--hhHhhHHhHHHHHHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------
Q 017532 154 ----L----AR---K--LAEKLEESVKSWKKRE--------IFVLNCLIGYHLSSKEYNVCFDLMNESIGR--------- 203 (370)
Q Consensus 154 ----~----~~---~--~~~~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------- 203 (370)
+ .. . .......+++...... -..++.++.+++....++.|+.........
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 1 00 0 0111122222222222 245678888999999999999887777651
Q ss_pred -------------CC-----CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 204 -------------GN-----GLDPIL-VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 204 -------------~~-----~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
.+ ..+..+ ...++.+.++.++..+++.+|..--. ..+......++.++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n------------~~~~d~~dL~~d~a~ 422 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN------------VWVSDDVDLYLDLAD 422 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc------------CChhhhHHHHHHHHH
Confidence 00 001122 55667777777777777777754431 123333677889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC
Q 017532 265 IYLVGKDYVSAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~ 343 (370)
.+...|++.+|+.+|..++...+. +..+|.++|.||..+|.+++|++.|++++...|++ ..+.+.|+++|... +
T Consensus 423 al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~---~D~Ri~Lasl~~~~--g 497 (895)
T KOG2076|consen 423 ALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN---LDARITLASLYQQL--G 497 (895)
T ss_pred HHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhc--C
Confidence 999999999999999999877653 56799999999999999999999999999999998 88999999999853 4
Q ss_pred chhhHHHHHHHHh
Q 017532 344 HSDIKRTLSSWIG 356 (370)
Q Consensus 344 ~~~~~~~ll~~~~ 356 (370)
..+++.+.++.+-
T Consensus 498 ~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 498 NHEKALETLEQII 510 (895)
T ss_pred CHHHHHHHHhccc
Confidence 4677777665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-10 Score=109.14 Aligned_cols=245 Identities=12% Similarity=0.112 Sum_probs=175.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
.....+.|+++.|...+.++... +|..........+..+...|+++.|...++.+.+.++-
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~--------------- 185 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR--------------- 185 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------
Confidence 34448999999999999997543 46543333333356688899999999999999665531
Q ss_pred CcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH-------H----HH----HHHH-hhHhhHHhHHHHHHH------
Q 017532 115 GSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV-------R----EK----LARK-LAEKLEESVKSWKKR------ 172 (370)
Q Consensus 115 ~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~-------~----~~----~~~~-~~~~~~~~~~~~~~~------ 172 (370)
.+..+++ .+.++...|++++++..+..+.+.. . .. +... .....+...+.|+..
T Consensus 186 ---~~~al~l-l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 186 ---HPEVLRL-AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred ---CHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence 1222332 3445577799999997776664220 0 00 0000 111122344555542
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 173 EIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
...+...++..+...|+.++|...++++++. + .++.+....+.+ ..|+.+++++..++.++..|+ +
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~---------~- 327 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-Q-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD---------T- 327 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC---------C-
Confidence 2567888999999999999999999999994 4 455444444443 459999999999999864333 3
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
...+..+|.+++..|++++|.++|+++++.+|++.. +..++.++...|+.++|..+|++++.+.
T Consensus 328 ---~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 ---PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 445777999999999999999999999999998654 5579999999999999999999998764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-11 Score=111.28 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=44.5
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhc
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSL 93 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~ 93 (370)
..+....+..+|..|++.|..++.. + . .++++++...+++..|.+.++...+...
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el----~-~-~it~~~n~aA~~~e~~~~~~c~~~c~~a 283 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALEL----A-T-DITYLNNIAAVYLERGKYAECIELCEKA 283 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhH----h-h-hhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence 3677788899999999999987543 3 2 4778888888999999999999888774
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-10 Score=118.06 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=192.5
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
+......+..+++.|++++|.++++++.. |+ ..+ |+..+.++++.|++++|...|+++..--.|+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d-~vs-~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd------- 488 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE------KD-VIS-WTSIIAGLRLNNRCFEALIFFRQMLLTLKPN------- 488 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CC-eee-HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-------
Confidence 33344567788899999999999888632 32 233 4444888999999999999999995321111
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--------HHHHHHH-hhHhhHHhHHHHHHH--HHHH
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--------REKLARK-LAEKLEESVKSWKKR--EIFV 176 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--------~~~~~~~-~~~~~~~~~~~~~~~--~~~~ 176 (370)
.+.+..+...+ ...|..+.+......+++.. ...+... +.+..+++.+.+... -..+
T Consensus 489 -----------~~t~~~lL~a~-~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 489 -----------SVTLIAALSAC-ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred -----------HhHHHHHHHHH-hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 11223232222 45566666555544433220 0011100 111222222222221 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
++.+...|...|+.++|+.+|+++.+.+...+..++..+-..+.+.|++++|.++|+++.+.. ...|+ .
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---------gi~P~--~ 625 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---------SITPN--L 625 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---------CCCCc--h
Confidence 788999999999999999999999987655677788888888999999999999999998422 23444 3
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..+..+...+.+.|++++|.+.++++ ...| +..+|..+-.++...|+.+.+....++++++.|++ ......|+.+
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~---~~~y~ll~n~ 700 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS---VGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHHH
Confidence 45667888999999999999999986 3444 47778888778888999999999999999999987 6677777888
Q ss_pred HHhccCCchhhHHHHHHHH
Q 017532 337 YELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~ 355 (370)
|... +.-+...++.+..
T Consensus 701 ya~~--g~~~~a~~vr~~M 717 (857)
T PLN03077 701 YADA--GKWDEVARVRKTM 717 (857)
T ss_pred HHHC--CChHHHHHHHHHH
Confidence 8643 3344444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-11 Score=100.77 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=126.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++..+...|+-+.+..+..++...+| .+..++..+|...++.|++..|+..+.++.++.+++ ..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d-------------~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD-------------WE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC-------------hh
Confidence 5677788888999999999999888888 888888778999999999999999999998654432 56
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
.|+.+|.+|...|++++|...|.+++++.|+++.+.+|+|..+.-.|+++.|..++.++...-+.+ ..+.-||+.+.
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad---~~v~~NLAl~~ 212 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD---SRVRQNLALVV 212 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc---hHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999998877766 77888888887
Q ss_pred HhccC
Q 017532 338 ELAYV 342 (370)
Q Consensus 338 el~~~ 342 (370)
.+..+
T Consensus 213 ~~~g~ 217 (257)
T COG5010 213 GLQGD 217 (257)
T ss_pred hhcCC
Confidence 76544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-12 Score=113.14 Aligned_cols=253 Identities=12% Similarity=0.115 Sum_probs=181.3
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhh---------hcCC
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELD---------SLED 95 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~---------~~~~ 95 (370)
|++++-....+..+..-|+|+.|...+.... ...|...-.+... ..|...++...+|...++ ++..
T Consensus 80 pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~----r~kd~~~k~~~r~-~~c~~a~~~~i~A~~~~~~~~~~~~anal~~ 154 (486)
T KOG0550|consen 80 PDNASYYSNRAATLMMLGRFEEALGDARQSV----RLKDGFSKGQLRE-GQCHLALSDLIEAEEKLKSKQAYKAANALPT 154 (486)
T ss_pred ccchhhhchhHHHHHHHHhHhhcccchhhhe----ecCCCccccccch-hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhh
Confidence 4555656668888889999999987665532 2334321111111 234444444444443333 1111
Q ss_pred CCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHH
Q 017532 96 FNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIF 175 (370)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (370)
+++ +.+.....+..+..+++.+.+...+|+..+|...--.+++..... ..
T Consensus 155 ~~~----------~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n--------------------~~ 204 (486)
T KOG0550|consen 155 LEK----------LAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN--------------------AE 204 (486)
T ss_pred hhc----------ccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch--------------------hH
Confidence 111 011111123446778889999999999998876443333211111 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP------------ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGK 243 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~ 243 (370)
.++..+.+++..++.+.|+..+++++..+| ++. ..+-.-|.-.++.|.+.+|.+.|..++.+.|++
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldp-dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n- 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDP-DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN- 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccCh-hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-
Confidence 556788899999999999999999999999 553 234566888899999999999999999877663
Q ss_pred ccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 244 FEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 244 ~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..++ +..+.++|.+....|+..+|+..++.++.+||....++..+|.|++.++++++|+++|+++++..-+
T Consensus 283 ------~~~n--aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 283 ------KKTN--AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ------cchh--HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2332 6789999999999999999999999999999999999999999999999999999999999998765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-11 Score=117.32 Aligned_cols=151 Identities=7% Similarity=-0.106 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
....+++.-+....+.++ .++.++.+||.+..+.|.+++|...+++++++.|++ ..+..+++.++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------------~~a~~~~a~~L~ 131 (694)
T PRK15179 66 HKPAAALPELLDYVRRYP-HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------------SEAFILMLRGVK 131 (694)
T ss_pred cchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------------HHHHHHHHHHHH
Confidence 345556666666677788 889999999999999999999999999999765553 778899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhh
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDI 347 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~ 347 (370)
+.+++++|+..+++++..+|+++.+++++|.++...|++++|+..|++++..+|++ ..++.+++.++.- .+..+.
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~~~a~~l~~--~G~~~~ 206 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYVGWAQSLTR--RGALWR 206 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH--cCCHHH
Confidence 99999999999999999999999999999999999999999999999999999987 8899999988763 344555
Q ss_pred HHHHHHHHhh
Q 017532 348 KRTLSSWIGR 357 (370)
Q Consensus 348 ~~~ll~~~~~ 357 (370)
+....+....
T Consensus 207 A~~~~~~a~~ 216 (694)
T PRK15179 207 ARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-10 Score=98.41 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=173.6
Q ss_pred HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 74 TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 74 ~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
+.-++-.++.+.|...|-.+.+.++ -.|...+....++...|..+.|+..-..++..-. .
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~-------------------~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd-l 101 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDP-------------------ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD-L 101 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCc-------------------hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-C
Confidence 4444445677888887777755442 2233444445555666776666643333321100 0
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017532 154 LARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
+ -.....+++.||.-|+..|=++.|..+|..++.... ....++..|-.+|-...++++|++.-+
T Consensus 102 -----T----------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~ 165 (389)
T COG2956 102 -----T----------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAE 165 (389)
T ss_pred -----c----------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 001135677899999999999999999999998777 777889999999999999999999999
Q ss_pred HHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 234 RVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 234 ~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
+...+.+. ...-++ +..+..++..+....+++.|+..+.+++..+|....+-..+|.+....|++..|++.+
T Consensus 166 ~L~k~~~q-------~~~~eI-AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 166 RLVKLGGQ-------TYRVEI-AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHcCCc-------cchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence 98877655 344555 8889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHH
Q 017532 314 ENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 314 ~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
+.+++.+|++ -..++--|...|.-. +..+....+|.
T Consensus 238 e~v~eQn~~y--l~evl~~L~~~Y~~l--g~~~~~~~fL~ 273 (389)
T COG2956 238 ERVLEQNPEY--LSEVLEMLYECYAQL--GKPAEGLNFLR 273 (389)
T ss_pred HHHHHhChHH--HHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 9999999986 245556666777632 33455555554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=109.63 Aligned_cols=249 Identities=14% Similarity=0.080 Sum_probs=155.9
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHH--HHH-HHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH--LTY-LAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIY 110 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~--~~~-~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~ 110 (370)
..+.||+.|++++.|.+++.+++.|- .|. +.. +.-.+.++.-++.|+.|++.-.--..+. .+.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla----------r~l 88 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA----------RLL 88 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH----------HHh
Confidence 67899999999999999999988761 111 111 1112345666677777765321100000 000
Q ss_pred CCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-
Q 017532 111 PNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE- 189 (370)
Q Consensus 111 ~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 189 (370)
+++-| .|.....+|+.......|.+++..|.+.+.-... +.+ +-...++++++|++|..+|+
T Consensus 89 gdklG----------EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are--LgD-----rv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 89 GDKLG----------EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE--LGD-----RVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred cchhc----------cccccccccchhhhhcccchHHHHHHHHhHHHHH--HhH-----HHhhhHHHhhhhhhhhhcccc
Confidence 11111 1222355677777777777777677666532210 000 00115788899999888763
Q ss_pred -------------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 190 -------------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 190 -------------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
++.|..+|..=++... ...-.++-+||..|.-+|+|+.|+.+-+.-+++.+.
T Consensus 152 ~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---- 227 (639)
T KOG1130|consen 152 TGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---- 227 (639)
T ss_pred cCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH----
Confidence 3344455544443322 011234567888888899999999988888877665
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER----DYN--DIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..+......++.|+|++++..|+|+.|+++|++.+.+ ... .+...+.+|.+|.-...+++||.+..+-+.+
T Consensus 228 ---fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 228 ---FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred ---hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333667888999999999999999999887654 222 3456678889999899999999999887665
Q ss_pred C
Q 017532 320 V 320 (370)
Q Consensus 320 ~ 320 (370)
.
T Consensus 305 A 305 (639)
T KOG1130|consen 305 A 305 (639)
T ss_pred H
Confidence 3
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-10 Score=110.68 Aligned_cols=268 Identities=15% Similarity=0.054 Sum_probs=178.5
Q ss_pred cccccC-CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCC
Q 017532 18 LTNAFG-SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDF 96 (370)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l 96 (370)
++.|+. .+.|..--+..-..+..+++..+|.+.+.++... +|.+....|...+.++-..+++.+|+...+...+-
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 344443 4566655566667788889999999998887544 45555666666677888899999999987766321
Q ss_pred CCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH------HHHHHH-----------hh
Q 017532 97 NSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR------EKLARK-----------LA 159 (370)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~------~~~~~~-----------~~ 159 (370)
-+-++ .+-.....+....++..++++.....+.... +...+. ..
T Consensus 543 ~~~N~-------------------~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 543 FGDNH-------------------VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhh-------------------hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 11000 0001122223445666777766655543332 000000 00
Q ss_pred HhhHHhH---------------------------------HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 160 EKLEESV---------------------------------KSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 160 ~~~~~~~---------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+...+++ ..|... ...+...+..+...+.-++|..++.++-.+.|
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~-~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~- 681 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL-QKLWLLAADLFLLSGNDDEARSCLLEASKIDP- 681 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-
Confidence 0000000 011110 23444667777788888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH--HHHHHHh
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR--EYEECIE 284 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~--~~~~~l~ 284 (370)
..+..++..|.++...|.+++|.+.|..++.+.|+ . ..+...+|.++...|+..-|.. .+..+++
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------------h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------------H-VPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------------C-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 88888888888888889999999888888855443 3 4556668888888887777777 8888888
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 285 RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 285 ~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+||.++.+|+.+|.++...|+.++|.++|..++++.++.
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 899999999999999999999999999998888887764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-10 Score=95.33 Aligned_cols=151 Identities=13% Similarity=0.016 Sum_probs=119.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-+..|+..|+++......++... + .. -+...++.++++..++++++..++ . ...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~--~-~~---------~~~~~~~~~~~i~~l~~~L~~~P~------------~-~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD--P-LH---------QFASQQTPEAQLQALQDKIRANPQ------------N-SEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC--c-cc---------cccCchhHHHHHHHHHHHHHHCCC------------C-HHHH
Confidence 34567888999887666544322 2 10 111267889999999999965443 3 6789
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL-MYLRD--LSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..+|.++...|++++|+..|++++.++|+++.++.++|.++ ...|+ +++|++.++++++.+|++ ..++++++..
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~LA~~ 153 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLLASD 153 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHHHHH
Confidence 99999999999999999999999999999999999999986 67787 599999999999999998 8899999999
Q ss_pred HHhccCCchhhHHHHHHHHhhhCC
Q 017532 337 YELAYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~~~~~~ 360 (370)
+.. .+..+++....+.+....|
T Consensus 154 ~~~--~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 154 AFM--QADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHH--cCCHHHHHHHHHHHHhhCC
Confidence 874 4446777777776654433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=104.92 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
-+-.-|.-.++.++|.+|+..|.+|+.+.|. . ...+.+++-+|.+.|.|+.|++.++.+|.+||..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------------n-AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------------N-AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------------c-chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence 3455688999999999999999999976544 3 56689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
.+|..+|.+|+.+|++.+|++.|.++++++|++ +...-||...-.
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~N---e~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDN---ESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc---HHHHHHHHHHHH
Confidence 999999999999999999999999999999998 666666655433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-10 Score=104.50 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++.++...|++++|+..++++++..| .++..+..+|.++...|++++|+.++++++...+. ++.....
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------~~~~~~~ 187 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------SSMLRGH 187 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------CcchhHH
Confidence 3444455555555555555555555555 44445555555555555555555555555532211 1111122
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
.+..+|.++...|++++|+..|++++...|
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 334455555555555555555555544333
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-10 Score=100.44 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.+|+.+|+-..|+..+.++++..| +...+....|.+++++|+++.|+.-|++++.-.+++ ....+.
T Consensus 73 ~aifrRaT~yLAmGksk~al~Dl~rVlelKp-DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~------~~~~ea 145 (504)
T KOG0624|consen 73 QAIFRRATVYLAMGKSKAALQDLSRVLELKP-DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN------GLVLEA 145 (504)
T ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHhcCc-cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc------chhHHH
Confidence 5678889999999999999999999999999 888888899999999999999999999998532221 111111
Q ss_pred --------HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 255 --------RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 255 --------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
..+........++..|++..|++...+.+++.|.+...+..++.||...|++..||..+..+-++..++
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--- 222 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN--- 222 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---
Confidence 122334455667788999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
....|.+++++-- -++.+....-.+.+-...||+
T Consensus 223 Te~~ykis~L~Y~--vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 223 TEGHYKISQLLYT--VGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred hHHHHHHHHHHHh--hhhHHHHHHHHHHHHccCcch
Confidence 7788999988653 344566666666666777774
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-10 Score=109.60 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
+-+...|+.++..|++++|..++.++|+.+| .++.+|+.||.+|.++||.++|....-.|.-+.++ +
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---------d--- 206 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---------D--- 206 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---------C---
Confidence 3445667778888999999999999999999 99999999999999999999999999888865444 2
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc--hhHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA--LNETLVVN 332 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~~~n 332 (370)
...|...+.....+|.+.+|+-+|.++|..+|.+...+.+++..+.++|+...|+..+.+++...|... .....++.
T Consensus 207 -~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 207 -YELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred -hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 345888999999999999999999999999999999999999999999999999999999999999321 23445555
Q ss_pred HHHHHH
Q 017532 333 LCSMYE 338 (370)
Q Consensus 333 l~~lye 338 (370)
.+..|-
T Consensus 286 ~~~~~~ 291 (895)
T KOG2076|consen 286 VAHYFI 291 (895)
T ss_pred HHHHHH
Confidence 555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=86.08 Aligned_cols=66 Identities=33% Similarity=0.391 Sum_probs=63.8
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR-DLSDSIKVLENALERVP 321 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-~~~~A~~~l~~al~~~p 321 (370)
+.+|..+|.+++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678899999999999999999999999999999999999999999999 79999999999999998
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=108.10 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
..|..++..|+|++|+..|+++++.+| .++.++..+|.++..+|++++|+..+++++++.+. . ..+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------------~-~~a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS------------L-AKA 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------C-HHH
Confidence 456777788999999999999999999 88999999999999999999999999999976443 2 567
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL 303 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~ 303 (370)
++.+|.+++..|+|++|+..|++++.++|+++.+...++.|..+.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999888888776555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=97.63 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
++..+|......|+|..|+..++++....| ++..+++.+|-+|.+.|+++.|..-|.+++++.+..
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------------- 167 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------------- 167 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------------
Confidence 344577888899999999999999999999 999999999999999999999999999999887663
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
..+..|+|..++-.|+++.|..++..+....+.+..+..|++.+.-..|++++|..+-.+-
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 3457889999999999999999999999998999999999999999999999998877653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-10 Score=104.47 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
..+.++...|++++|...++++++..| .+..++.. +..+...|++..+.....+++.... ..+|.. ...
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~-~~~ 116 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA--------PENPDY-WYL 116 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhccC--------cCCCCc-HHH
Confidence 455566677888888888888887777 66655554 5555555555444444444443211 223333 445
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV-ALNETLVVNLCSMY 337 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~~~nl~~ly 337 (370)
...+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|.. .......++++.+|
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 55677777777777777777777777777777777777777777777777777777777776642 11122344566665
Q ss_pred HhccCCchhhHHHHHHHH
Q 017532 338 ELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 338 el~~~~~~~~~~~ll~~~ 355 (370)
.. .+..+....+++..
T Consensus 197 ~~--~G~~~~A~~~~~~~ 212 (355)
T cd05804 197 LE--RGDYEAALAIYDTH 212 (355)
T ss_pred HH--CCCHHHHHHHHHHH
Confidence 53 33456666665554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-09 Score=108.27 Aligned_cols=206 Identities=15% Similarity=0.042 Sum_probs=161.5
Q ss_pred HHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH
Q 017532 73 NTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE 152 (370)
Q Consensus 73 ~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~ 152 (370)
++.+|...+++.+++.+++.+... +..+|-..+...+-.+...+.|.+|+..+..++.....
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~------------------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAE------------------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhc------------------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 467899999999999999999422 22244444444555557889999999999887643321
Q ss_pred HHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHH
Q 017532 153 KLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG--------------LDPILVSKLGFI 218 (370)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------~~~~~~~~lg~~ 218 (370)
.. . ..... .....|.-.++..++|++|..+++++.+..|. +-......++.+
T Consensus 360 ~~-~-~~~~~------------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 360 TF-R-NSDDL------------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred cc-C-CCcch------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 10 0 00000 11124556788899999999999999885440 123566788999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
+...|++.+|++.+++.+...|.+ ..+.+.+|.++...|.+.+|...++.+..++|++..+...+|.
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n-------------~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPAN-------------QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 999999999999999999765543 5567889999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 299 CLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 299 ~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++.+|++++|....+++++..|++
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999986
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=107.17 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
+...|..++..|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..+++++.++|+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 4556889999999999999999999765442 567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~ 114 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLAPGD---SRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence 99999999999999999999999999999987 55555555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=94.29 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-.-|.-++..|+|++|.+.|..|+.+++.. ....++..+.|+|.+++++++++.|++.+.++|+++|.+..+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~--------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPST--------STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccc--------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 334778889999999999999999999873 224457889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
+-.+|.+|.++.++++|++.|.++++.+|+. ..+.--+..|-.+..+.....|.+++.++...+
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~---~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSR---REAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcch---HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 666666666666666666688888888876543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-10 Score=105.92 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+++...+|...+..++|+++...++..++++| -....|+.+|.+.++.++++.|.+.|.+.+.+. |+
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~------------Pd 551 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE------------PD 551 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC------------CC
Confidence 45556777778888999999999999999999 999999999999999999999999999999654 44
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
. ..+|.|++..|++.|+-.+|...+.++++.+-.++..|-|.-.+..+.|.+++|++.+.+.+.+.-.
T Consensus 552 ~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 552 N-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred c-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 4 8899999999999999999999999999999999999999999999999999999999999877543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=94.03 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG--LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..++..|..++..|+|.+|+..|++++...|. .-+.+...+|.++...|++++|+..|++.++..|++ |
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---------~ 76 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---------P 76 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----------T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------c
Confidence 45678889999999999999999999999882 234778999999999999999999999999877663 2
Q ss_pred HHHHHHHHhHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHhC
Q 017532 253 EFRNLVSRNKALIYLVGKD-----------YVSAVREYEECIERDYNDIVA-----------------INNKALCLMYLR 304 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~-----------~~eA~~~~~~~l~~~p~~~~~-----------------~~nla~~~~~~g 304 (370)
.. ..+++.+|.+++.+.+ ..+|+..|+..+...|+...+ -...|..|.+.|
T Consensus 77 ~~-~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 77 KA-DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp TH-HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ch-hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 23 5677888988877643 348999999999999986532 135688899999
Q ss_pred CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC
Q 017532 305 DLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 305 ~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~ 343 (370)
.+..|+..++.+++..|+....+..++-+...|.....+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999877778888888888765553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-09 Score=93.64 Aligned_cols=255 Identities=9% Similarity=-0.002 Sum_probs=170.3
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhcccc----------------CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLL----------------TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFN 97 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~----------------~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~ 97 (370)
.+..+.....|+.|+..+..++++... ..|.+ .......+.|+-.+++-+.|...+.+...
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~-~e~~r~~aecy~~~~n~~~Ai~~l~~~p~-- 125 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGD-AEQRRRAAECYRQIGNTDMAIETLLQVPP-- 125 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCccc-HHHHHHHHHHHHHHccchHHHHHHhcCCc--
Confidence 556677788889998888876554421 12222 22333457889999999999987766621
Q ss_pred CCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHh-------------------
Q 017532 98 SSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKL------------------- 158 (370)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~------------------- 158 (370)
+... | -..++.+.+...-++..++.-++.+.+..|+-.+..-.
T Consensus 126 ---------------t~r~--p-~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~ 187 (564)
T KOG1174|consen 126 ---------------TLRS--P-RINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHA 187 (564)
T ss_pred ---------------cccc--h-hHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhh
Confidence 1111 1 12455666666667777888888887777765543210
Q ss_pred --hHhhHHhHHHHHHHH---------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 017532 159 --AEKLEESVKSWKKRE---------------------------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP 209 (370)
Q Consensus 159 --~~~~~~~~~~~~~~~---------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 209 (370)
.....+-...|.... ...+..+|.+++..|++.+|+-.|+++...+| ...
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i 266 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNV 266 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhh
Confidence 001112233343332 34556788899999999999999999988888 332
Q ss_pred HH----------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 210 IL----------------------------------VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 210 ~~----------------------------------~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
.. |..-|.+.+...+++.|..+-++++++. |..
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~------------~r~- 333 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE------------PRN- 333 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC------------ccc-
Confidence 22 2233344455667777777777777532 333
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+++.+|..+...|+.++|+-.|+.+..+-|.+...|--+--+|+..|++.||...-+.++...|.+
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 56677889999999999999999999998888888888888888888888877777777777766655
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.3e-10 Score=92.92 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.....++.+|..+...|++++|+.+|++++.+.++. ++. ..++.++|.++...|++++|+..|++++..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---------NDR-SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999999999998764431 112 4678889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRD--------------LSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~--------------~~~A~~~l~~al~~~p~~ 323 (370)
|.+..++.++|.++...|+ +++|++++++++..+|++
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999998887 577788888888878764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-09 Score=95.30 Aligned_cols=242 Identities=15% Similarity=0.026 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
.|++...|.|.++.+.+..+....|...+--+.+... .++. +. +-.-.+.+.+..|+.++|+.
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~-----------lr~N----vh--Ll~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT-----------LRCN----EH--LMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc-----------CCcc----HH--HHHHHhhhhhhhcCchHHHH
Confidence 3443334455566778877777777665544422211 0100 11 11123566688899999999
Q ss_pred HHHHHHHHHHHHHHH---Hh-----hHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 017532 142 RFYELLDFVREKLAR---KL-----AEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL 207 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~---~~-----~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 207 (370)
.|+......+-.+.. +. .+...+..++-.... +.-++.-+.+++..++|..|+.+.++.|+.++ .
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r 332 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-R 332 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-c
Confidence 998865333222211 10 000111111111101 22344556677788999999999999999999 8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHH-----------
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAV----------- 276 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~----------- 276 (370)
+..++...|+++.++|+.++|+-.|..|..+.|.. -+.+-.+-.+|...|++.||.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999765431 333444445555555555554
Q ss_pred -------------------------HHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 277 -------------------------REYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 277 -------------------------~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
+.+++++.++|....+.+.+|..+...|++.++++.+++.+...|+ ..+..
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----~~LH~ 475 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD----VNLHN 475 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc----cHHHH
Confidence 4444555555555555555555555566666666666666655554 34445
Q ss_pred HHHHHHH
Q 017532 332 NLCSMYE 338 (370)
Q Consensus 332 nl~~lye 338 (370)
.|+.+..
T Consensus 476 ~Lgd~~~ 482 (564)
T KOG1174|consen 476 HLGDIMR 482 (564)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=87.79 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=104.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
.....++...+...++.++..+| .. ..+...+|.+++..|++++|...|++++.. ..++.....+.
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~----------~~d~~l~~~a~ 88 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN----------APDPELKPLAR 88 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------CCCHHHHHHHH
Confidence 33468999999999999999999 66 355678999999999999999999999953 23455556778
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
+.+|.+++..|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8899999999999999999976 34445567788899999999999999999999874
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-10 Score=87.40 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..++.+|..+...|++++|++.|+++++..+++ +.. ..+++.+|.+++..|++++|+..|++++..+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------TYA-PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------ccc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3567788888888999999999998888654431 111 345677889999999999999999999888777
Q ss_pred C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 D---IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~---~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+ +.++.++|.++...|++++|+..+++++...|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 5 5678888999999999999999999999888875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-08 Score=97.00 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=49.1
Q ss_pred HHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCC
Q 017532 36 QDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGY 101 (370)
Q Consensus 36 ~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~ 101 (370)
.-+..+|++++|++.+....... + |...+.-.++..|+++|++++|...+..+.+.++.+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I----~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQI----L-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhC----C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 45688999999999988854433 2 3466777789999999999999999999988876444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-08 Score=94.82 Aligned_cols=251 Identities=12% Similarity=-0.002 Sum_probs=168.0
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh-hcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK-LRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~-l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
..+.+.+.+.++-|...|..+++. .|.+ ..+|.++.-+-+ -|..+.-.+.++++..--
T Consensus 522 da~~~~k~~~~~carAVya~alqv----fp~k--~slWlra~~~ek~hgt~Esl~Allqkav~~~--------------- 580 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQV----FPCK--KSLWLRAAMFEKSHGTRESLEALLQKAVEQC--------------- 580 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhh----ccch--hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---------------
Confidence 345667777888888888776554 4664 333444433332 355666666666553211
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH---HHH-----HHhhHhhHHhHHHHHHHH-----HHHHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE---KLA-----RKLAEKLEESVKSWKKRE-----IFVLNC 179 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~---~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~ 179 (370)
+.+- .+.++.+......|+...|...+..+....+. +.- .....+.+++-.+..+.. .+++.-
T Consensus 581 -pkae---~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mK 656 (913)
T KOG0495|consen 581 -PKAE---ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMK 656 (913)
T ss_pred -Ccch---hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHH
Confidence 1111 22334444444557877777776665433211 110 001122223333332222 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-+.+....++.++|+.+++++++..| +...+|..+|+++.++++++.|...|.+..+.+|.. .-.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------------ipLW 722 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------------IPLW 722 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------------chHH
Confidence 77777788999999999999999999 999999999999999999999999999999877753 3356
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.++.+--+.|+.-.|...++++.-.+|.+...|.-....-.+.|..++|...+.+|++..|+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 6677777778888888888888888888888887777777777888888888888888777764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=87.89 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHH
Q 017532 230 KSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS 309 (370)
Q Consensus 230 ~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A 309 (370)
++|+++++ .+|+. ......+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|
T Consensus 4 ~~~~~~l~------------~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 70 (135)
T TIGR02552 4 ATLKDLLG------------LDSEQ-LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEA 70 (135)
T ss_pred hhHHHHHc------------CChhh-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35777774 34444 566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCC
Q 017532 310 IKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFD 364 (370)
Q Consensus 310 ~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~ 364 (370)
+..+++++..+|++ ....++++.+|... +..+....+++..-+..|++..
T Consensus 71 ~~~~~~~~~~~p~~---~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 71 IDAYALAAALDPDD---PRPYFHAAECLLAL--GEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHhcCCCC---hHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccch
Confidence 99999999999987 88889999999854 4477777788877777777643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-10 Score=86.45 Aligned_cols=109 Identities=14% Similarity=-0.014 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+++.+|..+...|++++|+..|.+++..+| ++ ..+++.+|.++...|++++|+.+|++++...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS--------- 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------
Confidence 4678899999999999999999999999888 54 5688999999999999999999999999765542
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
+.. ..++..+|.++...|++++|+..|+++++..|++..+..
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 73 PKA-PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred Ccc-cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 111 456788999999999999999999999999999876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.3e-10 Score=101.17 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=74.7
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
...+.|++.|+.++++|.+|+..+.++|+.+|+|..+++..|.+++..|+++.|+..|++++++.|++ ..+...|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N---ka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN---KAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999998 666666666
Q ss_pred HHHhccC
Q 017532 336 MYELAYV 342 (370)
Q Consensus 336 lyel~~~ 342 (370)
+-+..+.
T Consensus 334 l~~k~~~ 340 (397)
T KOG0543|consen 334 LKQKIRE 340 (397)
T ss_pred HHHHHHH
Confidence 6554333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=87.65 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
...+.+|..++..|++++|...|+-+...+| .+...|+.||.++-.+|++++|+..|.++..+.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd------------ 102 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA------------ 102 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------------
Confidence 4557888999999999999999999999999 999999999999999999999999999999775542
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
...+.+.|.|++..|+.+.|.+.|+.++...
T Consensus 103 -p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 -PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-09 Score=97.32 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
....+-.+..++..|++++|...++.+++..| +++..+...+.+++..|+.++|.+.+++++.+.|.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------------ 372 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN------------ 372 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------
Confidence 56777888899999999999999999999999 99999999999999999999999999999976444
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
. ...++++|..+++.|++.+|+..++..+..+|+++..|..+|.+|..+|+..+|.....+........
T Consensus 373 ~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 373 S-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred c-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 2 55688999999999999999999999999999999999999988888888888888777777766654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=90.45 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
+.|..+...+..+++..+ ......++.+|.++...|++++|+..|++++.+.++ .+.. ..++.++|.++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------~~~~-~~~~~~lg~~~ 82 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---------PYDR-SYILYNIGLIH 82 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---------chhh-HHHHHHHHHHH
Confidence 557777777777765555 123567799999999999999999999999976432 1122 56789999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HhCCHH-------HHHHHHHHHHHhCCCc
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKALCLM-------YLRDLS-------DSIKVLENALERVPTV 323 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~-------~~g~~~-------~A~~~l~~al~~~p~~ 323 (370)
...|++++|+..|++++.++|.....++++|.++. ..|+++ +|+..+++++..+|..
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999998 777766 5566666677777754
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-08 Score=89.83 Aligned_cols=167 Identities=12% Similarity=0.089 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPIL---VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.++..|..++..|+|++|+..|++++...| ..+.+ .+.+|.++.+.|++++|+..|++.++..|++ |
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~---------~ 103 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---------P 103 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC---------C
Confidence 345677788889999999999999999999 66544 4889999999999999999999999877663 3
Q ss_pred HHHHHHHHhHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCHHH-----------------HHHHH
Q 017532 253 EFRNLVSRNKALIYLVGKD------------------YVSAVREYEECIERDYNDIVA-----------------INNKA 297 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~------------------~~eA~~~~~~~l~~~p~~~~~-----------------~~nla 297 (370)
+. ..+++.+|.+++..++ ..+|+..|++.+...|+...+ -...|
T Consensus 104 ~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 104 NI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred ch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 6778889988755541 357889999999999986522 12467
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
.-|.+.|++..|+.-++.+++..|+....+.+++-+...|..... .+.....+..+
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~--~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL--NAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Confidence 789999999999999999999999987778999999988864333 44454444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=103.74 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.+|-++|++++|...|+++++.+| .++.+++++|..|... ++++|++++.+|+.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~----------------- 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIY----------------- 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------------
Confidence 4778999999999999999999999999999 9999999999999999 99999999999984
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--------------------HHHHHHHHHhCCHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI--------------------NNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~--------------------~nla~~~~~~g~~~~A~~~l~ 314 (370)
.++..++|.++.+++.+.++.+|++...+ .-+-.+|...+++++++.++.
T Consensus 178 ----------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 178 ----------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred ----------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 14556688888888888888888765432 223377888999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 315 NALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
.+++.+|++ ..+.+.++..|--.+.+ .....+.++..+
T Consensus 248 ~iL~~~~~n---~~a~~~l~~~y~~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 248 KILEHDNKN---NKAREELIRFYKEKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHhcCCcc---hhhHHHHHHHHHHHccC-cchHHHHHHHhc
Confidence 999999998 88899999888743333 355555554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-08 Score=85.45 Aligned_cols=135 Identities=18% Similarity=0.075 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
++...-|..+-..|+|++|+++|+.+++.+| .+..++-..--+...+|+--+|++.+..-++.+.. |
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~---------D--- 153 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN---------D--- 153 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC---------c---
Confidence 3444556677788999999999999999999 88777766666777789988999999999876544 2
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD---LSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~---~~~A~~~l~~al~~~p~~ 323 (370)
.++|..++.+|+..|+|++|.-+|++++-+.|.++..+-.+|.+++..|. +.-|.++|+++++++|.+
T Consensus 154 -~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 154 -QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred -HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 67799999999999999999999999999999999999999999988764 678999999999999965
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=80.65 Aligned_cols=99 Identities=24% Similarity=0.318 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+++.+|.++...|++++|+..|+++++..+. . ..++..+|.++...|++++|++.|++++...|.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------------N-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4678899999999999999999999864332 1 35677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.++..+|.++...|++++|...++++++.+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999988773
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-09 Score=94.65 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=132.2
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~- 208 (370)
...|++.+|.+.+......... ... ...+ +..+...+.++. ..++++|+..|++++.... .++
T Consensus 46 k~~~~~~~A~~ay~kAa~~~~~-~~~-----~~~A--------a~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 46 KLAKDWEKAAEAYEKAADCYEK-LGD-----KFEA--------AKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHH-TT------HHHH--------HHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHhccchhHHHHHHHHHHHHH-cCC-----HHHH--------HHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcH
Confidence 4457778888877776433322 111 0011 233445555554 4599999999999987643 122
Q ss_pred ---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 209 ---PILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
...+..+|.+|... |++++|+++|++|..+.... ..+..........|.++...|+|++|++.|+++..
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-------GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678899999999 99999999999999987763 23333477788899999999999999999999987
Q ss_pred hCCC----C--H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH--HHHHHHHHHHHhccCCchhhHHHHH
Q 017532 285 RDYN----D--I-VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNE--TLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 285 ~~p~----~--~-~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
..-+ . . ..+.+.++|++..|++..|...+++....+|.+.... .++.+|...|+ +++.+.....+
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~---~~D~e~f~~av 257 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE---EGDVEAFTEAV 257 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH---TT-CCCHHHHC
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH---hCCHHHHHHHH
Confidence 5321 1 1 3556788999999999999999999999999875433 34445555554 44444444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-09 Score=92.59 Aligned_cols=122 Identities=13% Similarity=0.084 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+.+.-+.-++.-+..+| +|..-|..||.+|+.+|+++.|...|.++.++.+++ .+++..+|.+++.
T Consensus 137 ~~~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-------------~~~~~g~aeaL~~ 202 (287)
T COG4235 137 EMEALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-------------PEILLGLAEALYY 202 (287)
T ss_pred cHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHH
Confidence 46667778888999999 999999999999999999999999999999987663 3445666766655
Q ss_pred cC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 269 GK---DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 269 ~g---~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
+. ...+|...|++++..||.|..+.+.+|..++..|++.+|+..++.++...|...
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 43 457889999999999999999999999999999999999999999999998753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-09 Score=96.17 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=155.1
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhh-cCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKL-RRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l-~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
+.=..+..|..|++..++.-... + .+|. ...+.. ...++.. +.-+.+...++....-.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~----~--~~~~--l~av~~-la~y~~~~~~~e~~l~~l~~~~~~~------------ 96 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKK----S--SSPE--LQAVRL-LAEYLSSPSDKESALEELKELLADQ------------ 96 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-T----T--SSCC--CHHHHH-HHHHHCTSTTHHCHHHHHHHCCCTS------------
T ss_pred HHHHHHHHHHcCChhHHHHHhcc----C--CChh--HHHHHH-HHHHHhCccchHHHHHHHHHHHHhc------------
Confidence 44477889999999988854322 1 2343 222221 2234443 45566666665542111
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
.+...+ ..+++.+.+....|++++|+..+... .. . +.....+.+++.+++
T Consensus 97 ----~~~~~~-~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~------------l--------E~~al~Vqi~L~~~R 146 (290)
T PF04733_consen 97 ----AGESNE-IVQLLAATILFHEGDYEEALKLLHKG-----GS------------L--------ELLALAVQILLKMNR 146 (290)
T ss_dssp -------CHH-HHHHHHHHHHCCCCHHHHHHCCCTTT-----TC------------H--------HHHHHHHHHHHHTT-
T ss_pred ----cccccH-HHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc------------c--------cHHHHHHHHHHHcCC
Confidence 110111 34677777778889999888776542 00 0 222356678999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG--DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
++.|...++.+.+.+. +...+....+++.+..| .+.+|...|++.... .+.. ...+..++.+++
T Consensus 147 ~dlA~k~l~~~~~~~e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------------~~~t-~~~lng~A~~~l 212 (290)
T PF04733_consen 147 PDLAEKELKNMQQIDE-DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------------FGST-PKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------------S--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------------cCCC-HHHHHHHHHHHH
Confidence 9999999999988877 66655666677777766 589999999997631 1111 445778999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCc
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL-SDSIKVLENALERVPTV 323 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~-~~A~~~l~~al~~~p~~ 323 (370)
.+|+|++|.+.+++++..+|+++.++.|++++...+|+. +.+.+++.++...+|+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999 66777888888889975
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=99.52 Aligned_cols=136 Identities=12% Similarity=0.011 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhhcCC
Q 017532 175 FVLNCLIGYHLSSKE---YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG--------DLEGAKKSFNRVEEMLNEGK 243 (370)
Q Consensus 175 ~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~a~~l~~~~~ 243 (370)
.-++..|..++..++ ...|+.+|+++++.+| ++..++..++.++.... ++..+.+..+++..+..+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~-- 416 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL-- 416 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC--
Confidence 344566666665544 8899999999999999 99988888888775542 234555555555433111
Q ss_pred ccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 244 FEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 244 ~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+| .++..+|..+...|++++|...|+++++++| +..+|..+|.++...|++++|++.|++|+.++|.+
T Consensus 417 -----~~~~----~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 417 -----NVLP----RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred -----cCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 2233 4466678888899999999999999999999 58899999999999999999999999999999985
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-08 Score=95.77 Aligned_cols=208 Identities=16% Similarity=0.076 Sum_probs=152.3
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+.+....|++++|++.+.+........ ..++..+|.++++.|++++|...|..++..+|
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk--------------------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP 69 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDK--------------------LAVLEKRAELLLKLGRKEEAEKIYRELIDRNP 69 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCH--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 4444566799999998875532221111 13344778899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcC--------------------------------------
Q 017532 206 GLDPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEG-------------------------------------- 242 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~-------------------------------------- 242 (370)
++...+..+..+.... ++.+.-.+.|++.....|..
T Consensus 70 -dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~ 148 (517)
T PF12569_consen 70 -DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSN 148 (517)
T ss_pred -CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 8887777766665222 24555566666611111100
Q ss_pred -----------------------------Cc---cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 243 -----------------------------KF---EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 243 -----------------------------~~---~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.. ++.....|....++++.++..|-..|++++|+++.+++|+..|..+
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ 228 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV 228 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Confidence 00 0001223444457778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
..|...|.++...|++.+|.+.++.+-.+|+. +..+.+-+.=|.|.. +..+.+.+++..+-+.+
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~----DRyiNsK~aKy~LRa-~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLA----DRYINSKCAKYLLRA-GRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh----hHHHHHHHHHHHHHC-CCHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999987 677888888888754 45688888887775544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-10 Score=77.02 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=59.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+|..++..|++++|++.|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 479999999999999999999999999999999999999999999999999999999999974
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=78.35 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+++.+|..+...|++++|+..++++++..| .+..++..+|.++...|++++|+++|++++.+.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------------- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------------
Confidence 456888999999999999999999999999 888899999999999999999999999999654331
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...+..+|.++...|++++|...+++++..+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 346778999999999999999999999988773
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.4e-07 Score=86.92 Aligned_cols=294 Identities=13% Similarity=0.061 Sum_probs=186.0
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
.+...|+|..+.+.++++.--. -.....|.. ...++...|.--.|...++....+.+ ..+
T Consensus 332 al~~~g~f~~lae~fE~~~~~~----~~~~e~w~~-~als~saag~~s~Av~ll~~~~~~~~---------------~ps 391 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFS----FGEHERWYQ-LALSYSAAGSDSKAVNLLRESLKKSE---------------QPS 391 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh----hhhHHHHHH-HHHHHHHhccchHHHHHHHhhccccc---------------CCC
Confidence 4556666666666666642111 011122222 24556666666666666655543321 000
Q ss_pred ccchhHHHHHHH-cCcccCCccchHHHHHHHHHHHHHHHHH------------H------------hhHhhHHhHHHHHH
Q 017532 117 MVPFSLRWLYAV-LPIKLSNRQVGLDRFYELLDFVREKLAR------------K------------LAEKLEESVKSWKK 171 (370)
Q Consensus 117 ~~~~~~r~l~a~-~~~~~g~~~~al~~l~~ll~~~~~~~~~------------~------------~~~~~~~~~~~~~~ 171 (370)
++.. -++.+. +.-..+...++++....++..+...... + .......++....+
T Consensus 392 -~~s~-~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 392 -DISV-LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred -cchH-HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 1111 122222 2356688888888887777644222100 0 00011122222222
Q ss_pred HH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC---
Q 017532 172 RE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG--- 242 (370)
Q Consensus 172 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~--- 242 (370)
.. ..+.+.++..|...++.+.|....+++++.++.++...|..++.++.-.+++.+|+...+.++.-.+++
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 21 467788888888889999999999999999766888888888888888888888877766533222220
Q ss_pred ----------------------------C----------------------------c------------------cCC-
Q 017532 243 ----------------------------K----------------------------F------------------EDG- 247 (370)
Q Consensus 243 ----------------------------~----------------------------~------------------~~~- 247 (370)
+ . ..+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0 0 000
Q ss_pred -----------------------------------------------ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH
Q 017532 248 -----------------------------------------------LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE 280 (370)
Q Consensus 248 -----------------------------------------------~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 280 (370)
...+|.. ..++...|.++...|++.||.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-ASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-HHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0112222 4556778899999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 281 ECIERDYNDIVAINNKALCLMYLRDLSDSIK--VLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 281 ~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~--~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
.++.++|+++.....+|.++...|+..-|.. .+..+++.+|.+ ..++++|+.++.. .|+.+++.++.....+.
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n---~eaW~~LG~v~k~--~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN---HEAWYYLGEVFKK--LGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--ccchHHHHHHHHHHHhh
Confidence 9999999999999999999999998777777 999999999988 8999999999874 45567777776654443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=79.39 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
..|+++.|+.+|+++++..+. ++ . ...+..+|.|++..|+|++|+..+++ ...+|.+....+.+|.|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~---------~~-~-~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT---------NP-N-SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG---------TH-H-HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC---------Ch-h-HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 368999999999999976543 22 1 45677799999999999999999999 888888888888999999
Q ss_pred HHhCCHHHHHHHHHHH
Q 017532 301 MYLRDLSDSIKVLENA 316 (370)
Q Consensus 301 ~~~g~~~~A~~~l~~a 316 (370)
..+|++++|++.|+++
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-07 Score=88.49 Aligned_cols=262 Identities=14% Similarity=0.075 Sum_probs=151.6
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
.+..-..|+..+|......+++ .+|++...|+. .+-.......++.|...+.+.....+..
T Consensus 591 ake~w~agdv~~ar~il~~af~----~~pnseeiwla-avKle~en~e~eraR~llakar~~sgTe-------------- 651 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLA-AVKLEFENDELERARDLLAKARSISGTE-------------- 651 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhccCCcc--------------
Confidence 3444556888888877777644 35775444433 3556777788888888887774322111
Q ss_pred CcccchhHHHHH--HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 115 GSMVPFSLRWLY--AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 115 ~~~~~~~~r~l~--a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
|+.. +.+...+|+.++|+..+++.++.++.. .++| ..+|.++-++++.+.
T Consensus 652 --------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f------------~Kl~--------lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 652 --------RVWMKSANLERYLDNVEEALRLLEEALKSFPDF------------HKLW--------LMLGQIEEQMENIEM 703 (913)
T ss_pred --------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch------------HHHH--------HHHhHHHHHHHHHHH
Confidence 1111 111244566666666665554443322 2222 345556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|...|..-++.-| ....+|..|+.+-...|.+-+|...++++. ..+|.. ...|+..-..-++.|..
T Consensus 704 aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrar------------lkNPk~-~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 704 AREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRAR------------LKNPKN-ALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHH------------hcCCCc-chhHHHHHHHHHHcCCH
Confidence 6666666666655 555566666666666666666666666655 222322 33444444444455555
Q ss_pred HHHHHHHHHHHhhCC------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 273 VSAVREYEECIERDY------------------------------NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p------------------------------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+.|.....+++...| .|+.++...|..+....++++|.+-|++++..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 555555555555544 35666677888888899999999999999999998
Q ss_pred cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 323 VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 323 ~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+ ..++.++-.. ++... ..+...+++..+..-.|..
T Consensus 850 ~---GD~wa~fykf-el~hG-~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 850 N---GDAWAWFYKF-ELRHG-TEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred c---chHHHHHHHH-HHHhC-CHHHHHHHHHHHhccCCCC
Confidence 7 4344333333 33333 3455666666665544443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-08 Score=101.92 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc-------CC
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE-------DG 247 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~-------~~ 247 (370)
.++..|+..+...+++++|+.+++..++..| .....++.+|.++.+.+++.+|.-. .++.+.+....- ..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence 4455788888899999999999999999999 9999999999999999999888777 666554442100 00
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
-...++. ..+++.+|.||-++|++++|...|+++++.+|+|+.+++|+|..|... ++++|++++.+|+...
T Consensus 109 i~~~~~~-k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 109 ILLYGEN-KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHhhhhh-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 0011222 367889999999999999999999999999999999999999999999 9999999999998863
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-08 Score=84.16 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
+..++.+|..+...|++++|+.+|++++...+ + ....+..+|.++...|++++|+.+|++++++.+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------- 104 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE-DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--------- 104 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------
Confidence 46778999999999999999999999998776 3 2468899999999999999999999999975433
Q ss_pred hHHHHHHHHHhHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q 017532 251 EVEFRNLVSRNKALIYLVGKD--------------YVSAVREYEECIERDYND 289 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~--------------~~eA~~~~~~~l~~~p~~ 289 (370)
. ...+..+|.++...|+ +.+|++++++++..+|++
T Consensus 105 ---~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 ---Q-PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ---c-HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 2 4556778999988887 677888888888888876
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=98.58 Aligned_cols=206 Identities=15% Similarity=0.020 Sum_probs=132.4
Q ss_pred chhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017532 119 PFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMN 198 (370)
Q Consensus 119 ~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 198 (370)
-|..+.+.+++....|-...|+..++.+-..++-++--...+....+.++-.+.+ . .-.....|+..||+..=-.+|+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~l-e-k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQEL-E-KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHh-c-CCCcchhHHHhhhhccChHHHH
Confidence 3456667777778888888888877776544443321111110001111111111 0 0011112333344333344444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHH
Q 017532 199 ESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVRE 278 (370)
Q Consensus 199 ~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~ 278 (370)
++.+.....+..+...+|......++++++.++++..+++ +|-. ...|+..|.+..+.++++.|.++
T Consensus 475 kawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------------nplq-~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 475 KAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI------------NPLQ-LGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc------------Cccc-hhHHHhccHHHHHHhhhHHHHHH
Confidence 4444333233345555666666678999999999998854 3333 66789999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 279 YEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 279 ~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
|...+.++|++..+|+|++.+|.+.|+-.+|...+.+|++.+-++ ..++-|..++-+-.++
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~---w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH---WQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC---Ceeeechhhhhhhccc
Confidence 999999999999999999999999999999999999999988554 5666677776654443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-09 Score=75.63 Aligned_cols=67 Identities=27% Similarity=0.321 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERD 286 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~ 286 (370)
++..+..+|.++++.|++++|+.+|++++++.+ +. ..++.++|.++..+| ++++|++.|+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------------~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------------NN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------------TH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999997643 33 678999999999999 7999999999999999
Q ss_pred C
Q 017532 287 Y 287 (370)
Q Consensus 287 p 287 (370)
|
T Consensus 69 P 69 (69)
T PF13414_consen 69 P 69 (69)
T ss_dssp T
T ss_pred c
Confidence 8
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=82.98 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
+..++.+|.++..+|++++|+..|++++...+ + .+.++.++|.++...|++++|+..|++++++.+.. ..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~------~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL------PQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HH
Confidence 35667889999999999999999999998876 4 34588999999999999999999999999764432 00
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHH-------HHHHHHHHHHhhCCCCH
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYV-------SAVREYEECIERDYNDI 290 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~-------eA~~~~~~~l~~~p~~~ 290 (370)
.....+.++.++|..+...|+++ +|+.+|++++..+|.+.
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 11111334444444444888877 55566666777777644
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=94.63 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+..+.-.++.++|...+...+.+++..| .+.+++...|..+..+|+-++|..+...+++.+..+ ..
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-------------~v 76 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-------------HV 76 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCccc-------------ch
Confidence 3444455667899999999999999888 899999999999999999999999998888643322 34
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
.|..+|.++....+|++|+++|+.++..+|+|...+.-++.....+++++.....-.+.++..|+. ...++-++..+
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~---ra~w~~~Avs~ 153 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ---RASWIGFAVAQ 153 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh---HHHHHHHHHHH
Confidence 577789999999999999999999999999999999999999999999999999999999999886 66666666666
Q ss_pred HhccCCchhhHHHHHHHHhh
Q 017532 338 ELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 338 el~~~~~~~~~~~ll~~~~~ 357 (370)
-+..+ .......++.+..
T Consensus 154 ~L~g~--y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 154 HLLGE--YKMALEILEEFEK 171 (700)
T ss_pred HHHHH--HHHHHHHHHHHHH
Confidence 66544 5566666665544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=82.27 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=91.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHH
Q 017532 200 SIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREY 279 (370)
Q Consensus 200 ~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~ 279 (370)
+..+.+ +.-...+..|.-+.+.|++++|...|.-.....+ .++ .-++.+|.|+..+|+|++|+..|
T Consensus 29 l~gis~-~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~---------~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y 94 (165)
T PRK15331 29 VHGIPQ-DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF---------YNP----DYTMGLAAVCQLKKQFQKACDLY 94 (165)
T ss_pred HhCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------CcH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 4556678889999999999999999988774322 233 44789999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 280 EECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 280 ~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..+..++++|+...+..|.|++.+|+.++|+..|+.++. .|.
T Consensus 95 ~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 95 AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 999999999999999999999999999999999999998 454
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-09 Score=77.32 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGL-DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
.|+|+.|+.+++++++..|.+ +...++.+|.++++.|++++|+..+++ ... ++.. ......+|.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------------~~~~-~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------------DPSN-PDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------------HHCH-HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------------CCCC-HHHHHHHHHH
Confidence 589999999999999999922 456677899999999999999999999 422 2322 3455667999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEEC 282 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~ 282 (370)
++.+|++++|++.|+++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-09 Score=72.56 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+.+|..+++.|++++|+..|+++++ .+|+. ..++..+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~------------~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK------------QDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC------------CSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH------------HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3579999999999999999999993 44555 78899999999999999999999999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-06 Score=80.78 Aligned_cols=185 Identities=12% Similarity=0.128 Sum_probs=123.0
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchH-H-HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHH-H-LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGY 101 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~-~-~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~ 101 (370)
.|+|.+-....+..+|+.++|+.|+++.+.- +.. . ..+..=++.|+.++++.++|+..++.+..++
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~--------~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~---- 109 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKN--------GALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLD---- 109 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc--------chhhhcchhhHHHHHHHHHcccHHHHHHHHhcccccc----
Confidence 3566666666889999999999999766552 221 0 1111337899999999999999998553322
Q ss_pred cccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH----hhHhhHHhHHHHHHHH----
Q 017532 102 QYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK----LAEKLEESVKSWKKRE---- 173 (370)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~----~~~~~~~~~~~~~~~~---- 173 (370)
+ .+..+.+.+.+++|+++++++.|..+.+......... -..........|.++.
T Consensus 110 -----------------~-~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 110 -----------------D-KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred -----------------h-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 1 1233567777999999999999998865432222111 0000000011133333
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 174 ---IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-------GLD-------PILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 174 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
-..+|+.+-++...|+|.+|++.+++++++.. ..+ ..+...++.++..+|+.++|.+.|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35678999999999999999999999943321 011 1344678999999999999999998855
Q ss_pred HH
Q 017532 237 EM 238 (370)
Q Consensus 237 ~l 238 (370)
+.
T Consensus 252 ~~ 253 (652)
T KOG2376|consen 252 KR 253 (652)
T ss_pred Hh
Confidence 43
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-07 Score=75.79 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=118.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.+.-..+..|+.+.|..+++++....| .+......-|..+...|.+++|+++|+..++ .+|.. ..+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~------------ddpt~-~v~ 122 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKEAIEYYESLLE------------DDPTD-TVI 122 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhhHHHHHHHHhc------------cCcch-hHH
Confidence 344455567999999999999988889 8888888889999999999999999999993 34554 444
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+.-.--+.-.+|+.-+|++.+...++..++|..+|.-++..|...|+|.+|.=++++++-..|.+ +-..-.++.+
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n---~l~f~rlae~ 197 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN---PLYFQRLAEV 197 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Confidence 54555666789999999999999999999999999999999999999999999999999999976 4444444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-06 Score=76.71 Aligned_cols=252 Identities=12% Similarity=0.087 Sum_probs=157.4
Q ss_pred HHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCccc
Q 017532 39 ATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMV 118 (370)
Q Consensus 39 ~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (370)
.-.|+|..|-++..+....+ +. +...+...+-+=-+.|+++.|-..+.++.++.. +.. .
T Consensus 95 l~eG~~~qAEkl~~rnae~~----e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-------------~~~---l 153 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHG----EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-------------DDT---L 153 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcC----cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-------------Cch---H
Confidence 45799999999999865544 22 244555556667788999999999988876632 111 1
Q ss_pred chhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH-------HH-hhHhh-----------------HHhHHHHHHHH
Q 017532 119 PFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA-------RK-LAEKL-----------------EESVKSWKKRE 173 (370)
Q Consensus 119 ~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~-------~~-~~~~~-----------------~~~~~~~~~~~ 173 (370)
.-.+..+++....|+.+.|...+.+++...+.... .+ ..+.. ++.....+
T Consensus 154 --~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le--- 228 (400)
T COG3071 154 --AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE--- 228 (400)
T ss_pred --HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH---
Confidence 11344567778889999999888887654322210 00 00000 00000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFD---LMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~---~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
..++.. ++.+.++-..+.. ..+..-..- ..++.+....+.-+.+.|+.++|.+..+++++- .-
T Consensus 229 ~~a~~g---lL~q~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~----------~~ 294 (400)
T COG3071 229 QQAWEG---LLQQARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKR----------QW 294 (400)
T ss_pred HHHHHH---HHHHHhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh----------cc
Confidence 111111 1122222222222 222221111 255667777788888899999999999999852 22
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
+|.. ....+.+ .-+++..=++..++.+..+|+++..+..+|..+++.+.+.+|.++|+.+++..|+. .-.
T Consensus 295 D~~L----~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~----~~~ 364 (400)
T COG3071 295 DPRL----CRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA----SDY 364 (400)
T ss_pred ChhH----HHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh----hhH
Confidence 4432 2223444 67888888888899999999999999999999999999999999999999999874 445
Q ss_pred HHHHHHHHhc
Q 017532 331 VNLCSMYELA 340 (370)
Q Consensus 331 ~nl~~lyel~ 340 (370)
.-++.+++-.
T Consensus 365 ~~la~~~~~~ 374 (400)
T COG3071 365 AELADALDQL 374 (400)
T ss_pred HHHHHHHHHc
Confidence 5666666643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-08 Score=88.23 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=49.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
..|+|++|+..|+..++.+| ++ +.+++.+|.+|+..|++++|+..|++++...+++ |.. .+++..+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---------~~~-~dAl~kl 223 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---------PKA-ADAMFKV 223 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------cch-hHHHHHH
Confidence 34555555555555555555 33 3455555555555555555555555555443332 111 3344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
|.++...|++++|+..|+++++..|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5555555555555555555555555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-08 Score=76.25 Aligned_cols=99 Identities=21% Similarity=0.095 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN- 288 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~- 288 (370)
.+++.+|.++-..|+.++|+.+|++++... ...+ ....+++.+|.++...|++++|+..+++.+...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---------L~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---------LSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 467889999999999999999999999631 1223 33678899999999999999999999999999888
Q ss_pred --CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 289 --DIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 289 --~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+..+...++.++...|+.++|++.+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988775
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-06 Score=74.15 Aligned_cols=263 Identities=15% Similarity=0.151 Sum_probs=132.9
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.=-++..+=.|+|...|+-..+... .+.+ .....+...+++.+|.+..-..+.+.-. ..
T Consensus 12 LF~iRn~fY~Gnyq~~ine~~~~~~-----~~~~-~e~d~y~~raylAlg~~~~~~~eI~~~~-~~-------------- 70 (299)
T KOG3081|consen 12 LFNIRNYFYLGNYQQCINEAEKFSS-----SKTD-VELDVYMYRAYLALGQYQIVISEIKEGK-AT-------------- 70 (299)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcc-----ccch-hHHHHHHHHHHHHccccccccccccccc-CC--------------
Confidence 3367888889999999987666421 1221 3333445678888888887776654442 00
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (370)
.--..|.+. ......++.+.-+..+.+.+..... .... .++..-+.+++..|+++
T Consensus 71 ------~lqAvr~~a-~~~~~e~~~~~~~~~l~E~~a~~~~-----------~sn~-------i~~l~aa~i~~~~~~~d 125 (299)
T KOG3081|consen 71 ------PLQAVRLLA-EYLELESNKKSILASLYELVADSTD-----------GSNL-------IDLLLAAIIYMHDGDFD 125 (299)
T ss_pred ------hHHHHHHHH-HHhhCcchhHHHHHHHHHHHHhhcc-----------chhH-------HHHHHhhHHhhcCCChH
Confidence 000123222 2112223333333333332211000 0000 11123344566666777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
+|+...+.. ..-.+...--.++.++.+++-|++.++++.++..+. .-... +.+|+.++. ..++
T Consensus 126 eAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-------tLtQL-A~awv~la~---ggek 188 (299)
T KOG3081|consen 126 EALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA-------TLTQL-AQAWVKLAT---GGEK 188 (299)
T ss_pred HHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-------HHHHH-HHHHHHHhc---cchh
Confidence 776666552 223333333456666666666666666666432210 00001 223322221 2345
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHH
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTL 351 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~l 351 (370)
+.+|.-+|+..-+..|.++...+-+|+|.+.+|++++|...++.++..++++ ...+.|+-++-.+. +++.+.-...
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d---petL~Nliv~a~~~-Gkd~~~~~r~ 264 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD---PETLANLIVLALHL-GKDAEVTERN 264 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHh-CCChHHHHHH
Confidence 6666666666666666666666666666666677777777776666666666 66666665554432 2232333344
Q ss_pred HHHHhhhCCC
Q 017532 352 SSWIGRVAPD 361 (370)
Q Consensus 352 l~~~~~~~~d 361 (370)
+.++....|+
T Consensus 265 l~QLk~~~p~ 274 (299)
T KOG3081|consen 265 LSQLKLSHPE 274 (299)
T ss_pred HHHHHhcCCc
Confidence 4444444333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-08 Score=88.81 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGN---GL-----------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~ 242 (370)
....|+.|++.|+|..|...|++++..-. .. -...+.+++.++++++++.+|+.+.++++.+.++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~- 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN- 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-
Confidence 34678899999999999999999876433 01 1245689999999999999999999999975444
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhCC
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS-IKVLENALERVP 321 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A-~~~l~~al~~~p 321 (370)
+ ..+++-+|.++...|+|+.|+..|+++++++|+|-.+..-+..|..+..++.+. .+.|.+++..-+
T Consensus 290 -----------N-~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 -----------N-VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -----------c-hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3 677888999999999999999999999999999999999999888876665554 888888887755
Q ss_pred C
Q 017532 322 T 322 (370)
Q Consensus 322 ~ 322 (370)
.
T Consensus 358 ~ 358 (397)
T KOG0543|consen 358 E 358 (397)
T ss_pred c
Confidence 3
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-08 Score=85.12 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 208 DPILVSKLGFIQ-MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 208 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
+....+..|..+ +..|++++|+..|++.++..|++ ... ..+++.+|.+|+..|++++|+..|++++...
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------~~a----~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------TYQ----PNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 346667777765 66799999999999999876653 112 3456789999999999999999999999888
Q ss_pred CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YN---DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+ .+.+++.+|.++...|++++|++.|+++++..|+.
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 77 46889999999999999999999999999999986
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-07 Score=81.23 Aligned_cols=276 Identities=17% Similarity=0.117 Sum_probs=181.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
..+..||+-.+|..||+..... ...+|.+ ...+...+.|+..+..|.+|...+.+++.+.+-
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~----~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~------------- 76 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSE----LERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE------------- 76 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH----HhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-------------
Confidence 3578899999999999877663 3345743 555666789999999999999999999755431
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHH------HHHHHHH--HHhhHhhHHhHHHHHH----HHHHHHHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLD------FVREKLA--RKLAEKLEESVKSWKK----REIFVLNCL 180 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~------~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~l 180 (370)
--..|+..+...+..+.+..|+..+..+.. .|-+... .+..+....+..+..+ ..+.+..+.
T Consensus 77 ------~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 77 ------LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred ------HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccc
Confidence 113455666665667777777766655432 2221111 0111111111111111 125677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcCCc----------cCCcc
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML-NEGKF----------EDGLL 249 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~-~~~~~----------~~~~~ 249 (370)
|-++++.|+|+.|..-|+.+++.+. ..+-+-++++.++++.|+++.|.++..+.++-. ++.+. |..+-
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsG-yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSG-YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 8899999999999999999999988 788888999999999999999999998876532 11111 11111
Q ss_pred chHH-----HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 250 SEVE-----FRNLVSRNKALIYLVGKDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 250 ~~p~-----~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.+|. -..++...++-+++..|+++.|.+.+..+--. ..-||.++.|+|..-. .+++.+..+-+.=.+.++|-
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC
Confidence 1111 12566777889999999999998776544211 1136677788776443 45666667777777777775
Q ss_pred cchhHHHHHHHHHHH
Q 017532 323 VALNETLVVNLCSMY 337 (370)
Q Consensus 323 ~~~~~~~~~nl~~ly 337 (370)
+ .....|+-.+|
T Consensus 309 P---~ETFANlLlly 320 (459)
T KOG4340|consen 309 P---PETFANLLLLY 320 (459)
T ss_pred C---hHHHHHHHHHH
Confidence 5 55555655555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-07 Score=75.21 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+.+.+|.+++..|++++|+..|+.++...+ +. ..+...+|.+++..|++++|+..++... +
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--------------~ 113 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLRLARILLQQGQYDEALATLQQIP--------------D 113 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--------------C
Confidence 5567899999999999999999999999876 43 3567889999999999999999997643 1
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+.+...++..+|.++...|++++|+..|++++
T Consensus 114 ~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 11224567779999999999999999999874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.8e-07 Score=84.57 Aligned_cols=242 Identities=16% Similarity=0.134 Sum_probs=164.7
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
++.+......++|.+.+++++.+.. ..|. +...+.+++..|+.+|+-++|....+.....|
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~----k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------------- 71 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILK----KFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------------- 71 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH----hCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC--------------
Confidence 4456677888999999988877543 4565 34556678899999999999998776654322
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (370)
.+|.|.| .++ +-++....+.++|+.-+..++..-+.. . .++..++..-.++|+|+
T Consensus 72 --~~S~vCw--Hv~-gl~~R~dK~Y~eaiKcy~nAl~~~~dN------------~--------qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 72 --LKSHVCW--HVL-GLLQRSDKKYDEAIKCYRNALKIEKDN------------L--------QILRDLSLLQIQMRDYE 126 (700)
T ss_pred --cccchhH--HHH-HHHHhhhhhHHHHHHHHHHHHhcCCCc------------H--------HHHHHHHHHHHHHHhhh
Confidence 2344444 222 222244455556665555544322211 1 23345666677789999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
.....=.+.++..| ..-..|...+..+...|++..|....+...+....+ .+..+-.. .........++.+.|.
T Consensus 127 ~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~----~s~~~~e~-se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 127 GYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS----PSKEDYEH-SELLLYQNQILIEAGS 200 (700)
T ss_pred hHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCHHHHHH-HHHHHHHHHHHHHccc
Confidence 98888888888888 777888888889999999999988888877654321 11222233 5556667778888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++|++.+..--..--+.....-..|..++++|++++|+..+...+..+|++
T Consensus 201 ~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 8888877765432222334455567888899999999999999999999975
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=70.90 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=54.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++..|++++|++.|++++..+|++..++..+|.++...|++++|.+.+++++..+|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4678999999999999999999999999999999999999999999999999999985
|
... |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-07 Score=79.24 Aligned_cols=283 Identities=11% Similarity=0.030 Sum_probs=163.3
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.+..++...+|..|+.+++-....+ .... ..+..|+ +.|+.++|.|++|+.++..+..-+.++
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~--~EEE-~~~~lWi-a~C~fhLgdY~~Al~~Y~~~~~~~~~~------------- 90 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLD--REEE-DSLQLWI-AHCYFHLGDYEEALNVYTFLMNKDDAP------------- 90 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccc--hhhh-HHHHHHH-HHHHHhhccHHHHHHHHHHHhccCCCC-------------
Confidence 5899999999999999988765333 1112 1344554 889999999999999998885433211
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHH--HHHHHHHHHH--hhHhhHHhHHHHHHHH---HHHHHHHHHHHHh
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELL--DFVREKLARK--LAEKLEESVKSWKKRE---IFVLNCLIGYHLS 186 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll--~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~la~~~~~ 186 (370)
-.+.+-.|-+..++|...+|.......- ..|.+.+..- +.... ..+-.+.+.+ .+-...++.+++.
T Consensus 91 ------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE-k~~~~fh~~LqD~~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 91 ------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE-KRILTFHSSLQDTLEDQLSLASVHYM 163 (557)
T ss_pred ------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH-HHHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 1112223333355566666554433321 1122221100 00000 0000001111 1233478888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.-.|++||.+|.+++..+| ....+-..++.+|.++.-++-+.+.+.--++..+++ +.+...++...
T Consensus 164 R~HYQeAIdvYkrvL~dn~-ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS-------------tiA~NLkacn~ 229 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNP-EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS-------------TIAKNLKACNL 229 (557)
T ss_pred HHHHHHHHHHHHHHHhcCh-hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc-------------HHHHHHHHHHH
Confidence 8899999999999999888 666666788999999999999999888888665553 22222233333
Q ss_pred HH--cCCHHH----------------HHHHHHH----------HHhhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 267 LV--GKDYVS----------------AVREYEE----------CIERDY----NDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 267 ~~--~g~~~e----------------A~~~~~~----------~l~~~p----~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
++ .|+..+ +...++. ++..-| .-|.+..|+++-|++.++.++|+..+.
T Consensus 230 fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred hhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 32 232222 2222221 111112 235778899999999999999999887
Q ss_pred HHHHhCCCcc--hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 315 NALERVPTVA--LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 315 ~al~~~p~~~--~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
.. +|... ..-..+.+++.--|..+...-+.+...++.|+.
T Consensus 310 dl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 310 DL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred hc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 64 55421 112233444444454444344455555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-08 Score=70.39 Aligned_cols=61 Identities=33% Similarity=0.432 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+++..+++++|++++++++..+|+++..+..+|.++..+|++++|++.|+++++..|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4678999999999999999999999999999999999999999999999999999999986
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=75.07 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..+++-|...++.|+|++|+..|+.+...+| .. ..+...++..+.+.|+++.|+.+.++-+++.|. +
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---------~ 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---------H 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---------C
Confidence 4456777788899999999999999999988 43 578899999999999999999999999988766 3
Q ss_pred HHHHHHHHHhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHH---------------HH--HHHHHHHHHhCCH
Q 017532 252 VEFRNLVSRNKALIYLVG--------KDYVSAVREYEECIERDYNDIV---------------AI--NNKALCLMYLRDL 306 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~--------g~~~eA~~~~~~~l~~~p~~~~---------------~~--~nla~~~~~~g~~ 306 (370)
|+. ..+...+|.+++.. .-..+|+..|+..+...|+..- +. ...|.-|.+.|.+
T Consensus 105 ~n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 105 PNA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CCh-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 444 77888899998763 3345788889999999998541 11 2456778889999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 307 SDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 307 ~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
-.|+..++.+++..|+.......+.-+...|+-..- +..+.+....++...|++
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl--~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGL--TDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC--hHHHHHHHHHHHhcCCCC
Confidence 999999999999998876667888888888885444 566666666777777776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=85.35 Aligned_cols=120 Identities=14% Similarity=0.020 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
....+++..+..++..|++++|.+.++..+...|+ + .+.+...|.++++.|+.++|.+.+++++..+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~---------N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD---------N----PYYLELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC---------C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 66788999999999999999999999998854433 2 4556678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
|+.+....|+|.++++.|++++|+..+...+..+|++ ...+..|+..|+...+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~ 423 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGN 423 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998 7788888888886544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-06 Score=91.91 Aligned_cols=262 Identities=13% Similarity=0.029 Sum_probs=169.5
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
.....|++.+|...++++.......++..........+.++...|++++|...+.+........ . ...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~----------g--~~~ 528 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH----------D--VYH 528 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh----------c--chH
Confidence 3457999999999998876431111111111223334566788999999999988875331100 0 000
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDL 196 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 196 (370)
...+. ....+.+....|+..+|...+.+.+..+...-.. . . +. ...++..++.++...|++++|...
T Consensus 529 ~~~~~-~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~---~---~----~~--~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 529 YALWS-LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE---Q---L----PM--HEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc---c---c----cH--HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11111 1223455577899999999888877654432100 0 0 00 012344678888889999999999
Q ss_pred HHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---------------------------
Q 017532 197 MNESIGRGN----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE--------------------------- 245 (370)
Q Consensus 197 ~~~~l~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~--------------------------- 245 (370)
+++++.... ......+..+|.++...|++++|...++++..+.......
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW 675 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 999877533 1123455678999999999999999999987764332100
Q ss_pred -----CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 246 -----DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 246 -----~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
......+......+...|.++...|++++|+..|++++... .....++..+|.++...|+.++|...+.
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00000000001124568889999999999999999998763 1234578889999999999999999999
Q ss_pred HHHHhCCCc
Q 017532 315 NALERVPTV 323 (370)
Q Consensus 315 ~al~~~p~~ 323 (370)
++++.....
T Consensus 756 ~Al~la~~~ 764 (903)
T PRK04841 756 EALKLANRT 764 (903)
T ss_pred HHHHHhCcc
Confidence 999987553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=92.02 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=66.7
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV---AINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~---~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
+..+|+. ...++++|.+|+..|+|++|+..|+++++++|++.. +|+|+|.+|..+|++++|++.++++++..
T Consensus 68 ~~~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3566777 889999999999999999999999999999999985 49999999999999999999999999983
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.1e-06 Score=86.71 Aligned_cols=278 Identities=12% Similarity=-0.004 Sum_probs=171.3
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
....+...|++.+|+..+..+ + ++..........++.+...|+++.+...+..+..-. .
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a---~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---------------~ 405 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAA---G---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---------------L 405 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHC---C---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---------------H
Confidence 445677788888888765553 1 121111112223566777888888777665551000 0
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVC 193 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (370)
.+ .|. +....+.+....|++.++...+..+....... ..... . .. ...+...++.++...|++++|
T Consensus 406 ~~--~~~-l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~----~~~~~---~-~~---~~~~~~~~a~~~~~~g~~~~A 471 (903)
T PRK04841 406 LE--NPR-LVLLQAWLAQSQHRYSEVNTLLARAEQELKDR----NIELD---G-TL---QAEFNALRAQVAINDGDPEEA 471 (903)
T ss_pred hc--Ccc-hHHHHHHHHHHCCCHHHHHHHHHHHHHhcccc----Ccccc---h-hH---HHHHHHHHHHHHHhCCCHHHH
Confidence 00 000 11222333356678777777665543322110 00000 0 00 012333567788889999999
Q ss_pred HHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 194 FDLMNESIGRGNGLDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
...+++++...+..+. .+...+|.++...|++++|...+++++...... ..+........++|.++...
T Consensus 472 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-------g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 472 ERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-------DVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHC
Confidence 9999999885552332 345778999999999999999999999876542 12222245677889999999
Q ss_pred CCHHHHHHHHHHHHhhC-----C---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHHHh
Q 017532 270 KDYVSAVREYEECIERD-----Y---NDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV--ALNETLVVNLCSMYEL 339 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~-----p---~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~~~nl~~lyel 339 (370)
|++++|...+++++... + .....+..+|.++...|++++|...+++++...... ......+.+++.++..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999999998762 1 123456688999999999999999999998764321 1123344567777654
Q ss_pred ccCCchhhHHHHHHHH
Q 017532 340 AYVNHSDIKRTLSSWI 355 (370)
Q Consensus 340 ~~~~~~~~~~~ll~~~ 355 (370)
. +..+.....+...
T Consensus 625 ~--G~~~~A~~~l~~a 638 (903)
T PRK04841 625 R--GDLDNARRYLNRL 638 (903)
T ss_pred c--CCHHHHHHHHHHH
Confidence 3 3345555555444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-07 Score=86.73 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.+..++...++++.|+.+++++.+.+| .....+++++...++-.+|+..+++++...+. + ...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---------d----~~L 236 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP----EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ---------D----SEL 236 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC---------C----HHH
Confidence 344555667899999999999998777 35667899999999999999999999953332 2 566
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
+...+..++..++++.|++..++++...|++...|+.||.+|...|++++|+-.++.+-
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77889999999999999999999999999999999999999999999999999887553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-07 Score=85.02 Aligned_cols=132 Identities=10% Similarity=-0.013 Sum_probs=110.9
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhcC
Q 017532 178 NCLIGYHLSSK---EYNVCFDLMNESI---GRGNGLDPILVSKLGFIQMQV---------GDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 178 ~~la~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~a~~l~~~~ 242 (370)
+.+|..++..+ ..+.|+.+|.+++ ..+| ....++..++.+++.. .+..+|...-++|+++.+.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp-~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~- 336 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQT-LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV- 336 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCc-ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-
Confidence 45555554443 4567999999999 8888 8899999999888764 2456778888888865443
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
. ..++..+|.++...|+++.|+..|++++.++|+.+.+++..|......|+.++|++.++++++++|.
T Consensus 337 -----------D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 337 -----------D-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred -----------C-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 2 6677889999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q 017532 323 V 323 (370)
Q Consensus 323 ~ 323 (370)
-
T Consensus 405 ~ 405 (458)
T PRK11906 405 R 405 (458)
T ss_pred h
Confidence 4
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-08 Score=70.80 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=57.9
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-------YNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
|+. ..++.++|.++...|++++|+.+|++++++. |....+++++|.++...|++++|++++++++++
T Consensus 2 ~~~-a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDT-ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445 7788999999999999999999999999761 223578999999999999999999999999875
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-07 Score=71.76 Aligned_cols=99 Identities=14% Similarity=-0.005 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
++++.++..+-..|+.++|+.+|++++..+. .. ..++..+|..+...|++++|+..+++++.-.++. ..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~------~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD------ELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------ccc
Confidence 4678899999999999999999999999876 33 4677899999999999999999999998644432 112
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
..+....+.++...|+++||+..+-.++.
T Consensus 75 ----~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 ----AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455688999999999999999988775
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-07 Score=71.70 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
..+..++.-|.-.++.|++++|++.|+.+..-.|.++ ....+.+.+|.+++..|++++|+..+++-++++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4567788889999999999999999999886544431 114556779999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHhCCCc
Q 017532 287 YNDI---VAINNKALCLMYLRD---------------LSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~---~~~~nla~~~~~~g~---------------~~~A~~~l~~al~~~p~~ 323 (370)
|.++ -+++..|.+++.... ..+|...|++.++..|+.
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 8776 588899999998877 889999999999999975
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=85.66 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
.+++-+||+.|+-.|+|+.|+...+.-+.+.. .+ .-.++.++|.++...|+++.|+++|++.+.+....
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel------ 268 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL------ 268 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh------
Confidence 46788999999999999999998877665543 11 12567899999999999999999999988775542
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+....++.-+.+|+.|....++++||.++.+-+++- -....++..+|.++-..|..++|+.+.+..++.
T Consensus 269 -g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 269 -GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred -cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2333346777889999999999999999999977663 234578899999999999999999999988776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=92.03 Aligned_cols=145 Identities=13% Similarity=-0.001 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
+..+|.+|+..-|...|...|+++.++++ .+..+...++..|....+++.|....-++-+.. ......
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka-----------~a~~~k 562 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKA-----------PAFACK 562 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-----------hHHHHH
Confidence 33444444444444444444444444444 444444444444444444444444422222111 111124
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..|..+|..|.+.+++..|+..|+.++..+|.|...|..+|.+|...|++.-|++.|.++..++|.. --..|-.+.+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s---~y~~fk~A~~ 639 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS---KYGRFKEAVM 639 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh---HHHHHHHHHH
Confidence 5667799999999999999999999999999999999999999999999999999999999999986 4455555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.2e-07 Score=81.35 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GL----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
.+...|..|-..|+|++|...|.++..... .. ....+...+.++.+. ++++|+.+|+++..+.... .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-------G 108 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-------G 108 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-------C
Confidence 344556667777888888888888754332 01 123455566666555 9999999999999987653 3
Q ss_pred hHHHHHHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 251 EVEFRNLVSRNKALIYLVG-KDYVSAVREYEECIERD--YND----IVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~--p~~----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
++...+..+..+|.+|... |++++|+++|+++++.. .+. ...+.++|.++...|+|++|++.|+++....-
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 4555578889999999999 99999999999999873 112 25677899999999999999999999988643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-07 Score=71.82 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..++.-|...++.|+|++|+..++.+....| .-...+...||.+|+..|++++|+..+++-+++.|.+ |
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h---------p 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH---------P 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------C
Confidence 4456778888899999999999999999988 2345778999999999999999999999999987763 4
Q ss_pred HHHHHHHHhHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHH
Q 017532 253 EFRNLVSRNKALIYLVGKD---------------YVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~---------------~~eA~~~~~~~l~~~p~~~~~ 292 (370)
+. ..++..+|++++.+.. ..+|...|++++...|++..+
T Consensus 82 ~v-dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 82 NV-DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred Cc-cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 44 6788999999999988 899999999999999987644
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-05 Score=71.85 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+...++.-+...|++++|..+..++++..- +. .+...++ ..+-|+.+.=++..++.+...+ .+|
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~---------~~p- 328 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQHP---------EDP- 328 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-Ch-hHHHHHh--hcCCCCchHHHHHHHHHHHhCC---------CCh-
Confidence 45566778888999999999999999998765 33 3333333 3456888888888888885433 344
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
..+..+|..+++.+.|.+|.++|+.++...|+ ...++-+|.++...|+..+|.+..++++...
T Consensus 329 ---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 ---LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred ---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 45778999999999999999999999998775 6778889999999999999999999998653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=67.73 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++..+|.+|..+|++++|+++|++++++..... ...|.. +.++.++|.++...|++++|+++|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~-a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----DDHPDT-ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----THHHHH-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----CCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999854421 234555 889999999999999999999999999875
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-06 Score=76.02 Aligned_cols=168 Identities=13% Similarity=0.046 Sum_probs=125.0
Q ss_pred CcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 017532 130 PIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD- 208 (370)
Q Consensus 130 ~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~- 208 (370)
....|+.++|+..|..++...+... ....+.+.+|.++++.++|++|+..+++.++.+| ++
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~-----------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P-~~~ 103 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGP-----------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THP 103 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-CCC
Confidence 3667999999999888765443211 0013456899999999999999999999999999 54
Q ss_pred --HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHhhcCCccCC-----ccchHHHHHHHHHhHH
Q 017532 209 --PILVSKLGFIQMQVG---------------D---LEGAKKSFNRVEEMLNEGKFEDG-----LLSEVEFRNLVSRNKA 263 (370)
Q Consensus 209 --~~~~~~lg~~~~~~g---------------~---~~~A~~~~~~a~~l~~~~~~~~~-----~~~~p~~~~~~~~~~g 263 (370)
+.+++.+|.++...+ | ..+|+..|++.++..|++..... ..+... .+.-.+..|
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-la~~e~~ia 182 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR-LAKYELSVA 182 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 367788898865554 2 24678899999888777521000 000111 133445679
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
..|++.|+|.-|+.-|+.+++..|+.+ .++..++.++..+|..++|.......
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999999999999999988754 78899999999999999999887544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.7e-06 Score=85.47 Aligned_cols=229 Identities=11% Similarity=0.039 Sum_probs=167.1
Q ss_pred CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcC--cccCCccc
Q 017532 61 TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLP--IKLSNRQV 138 (370)
Q Consensus 61 ~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~--~~~g~~~~ 138 (370)
.+|++.+.|..| ..-.+.++..+.|.+...++..... .....+ -++++.|.+- ..-|..+.
T Consensus 1453 ssPNSSi~WI~Y-Maf~LelsEiekAR~iaerAL~tIN------------~REeeE----KLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1453 SSPNSSILWIRY-MAFHLELSEIEKARKIAERALKTIN------------FREEEE----KLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred cCCCcchHHHHH-HHHHhhhhhhHHHHHHHHHHhhhCC------------cchhHH----HHHHHHHHHhHHHhhCcHHH
Confidence 578877877776 5558889999999998888743211 000101 1233444331 22232222
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017532 139 GLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFI 218 (370)
Q Consensus 139 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 218 (370)
-.+.|+.+...|... .+|..|..+|...+.+++|.++|+.+++... +....|...|..
T Consensus 1516 l~kVFeRAcqycd~~---------------------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAY---------------------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHHHHHhcchH---------------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHH
Confidence 222233333323222 4667888999999999999999999999988 889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
+++..+-+.|...+++|+...|..+ + .....-.+.+-|+.|+.+.+...|+-.+..+|.-..+|+-+..
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~e-------H----v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQE-------H----VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhh-------h----HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 9999999999999999997666531 2 4445567899999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 299 CLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 299 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
.-.+.|+.+.+...|++++.+.=.. -.-..+|+.=.=||..
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~-kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSI-KKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCCh-hHhHHHHHHHHHHHHh
Confidence 9999999999999999999986443 1134445555556643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=75.58 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.++..++..|...++.|++++|+..|+++....|.+ ..- ..+.+.+|.+++..|++++|+..|++.+...
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------~~a----~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------PYA----PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------TTH----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------hHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999999999876654 222 4567889999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCcc
Q 017532 287 YNDI---VAINNKALCLMYLR-----------DLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 287 p~~~---~~~~nla~~~~~~g-----------~~~~A~~~l~~al~~~p~~~ 324 (370)
|+++ .+++.+|.+++... ...+|+..|+..+...|+..
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 8866 58889999876653 34689999999999999864
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-06 Score=75.85 Aligned_cols=163 Identities=14% Similarity=0.159 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HhhcC-CccCC
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE----------MLNEG-KFEDG 247 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~----------l~~~~-~~~~~ 247 (370)
.+|.+++..|+|++|+..|.-+...+. .+..++.+|+.+++.+|.+.+|.+.-.++-+ +..+. ....-
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 467899999999999999999998777 7888999999999999999999988776320 00000 00000
Q ss_pred ccchHHH--HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 248 LLSEVEF--RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 248 ~~~~p~~--~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.....+. ..+-...++-+.+..--|.+|++.|.+++..+|+....-.++|.||.++.-++-+.+.+.--++..|+..+
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 0000000 01223446777777788999999999999999998888889999999999999999999999999998522
Q ss_pred hHHHHHHHHHHHHhccCCc
Q 017532 326 NETLVVNLCSMYELAYVNH 344 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~ 344 (370)
..-..+|.+|.+.....
T Consensus 221 --A~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 221 --AKNLKACNLFRLINGRT 237 (557)
T ss_pred --HHHHHHHHHhhhhccch
Confidence 22234556677665533
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.6e-06 Score=77.60 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
.+..+|.+..+++++.++ .|+.++..+|.+....|+++.|...|++|..+ +|+. +.++...|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------------~Pn~-A~~~~~~~~~~~ 383 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH------------STDI-ASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------------CCcc-HHHHHHHHHHHH
Confidence 456689999999999999 99999999999999999999999999999955 5555 888999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINN-KALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~n-la~~~~~~g~~~~A~~~l~~al~ 318 (370)
..|+.++|++.++++++++|.-..+-.. +.+-.+....+++|++.|-+-.+
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 9999999999999999999987655443 33425667789999999877544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-06 Score=83.38 Aligned_cols=262 Identities=13% Similarity=0.103 Sum_probs=136.3
Q ss_pred ccccc-CCCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCC
Q 017532 18 LTNAF-GSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDF 96 (370)
Q Consensus 18 ~~~~~-~~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l 96 (370)
+++|+ ..|+|+..-...++..-.+|+|..|++.+.++.. .+|.+....+. .+...+-+|.|.+|...+..+..-
T Consensus 585 fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~----LrP~s~y~~fk-~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 585 FQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL----LRPLSKYGRFK-EAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh----cCcHhHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455 3778888888899999999999999999988643 46874332222 356688899999999887766322
Q ss_pred CCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHH---
Q 017532 97 NSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (370)
.+...- . ........+|..... .-.|-...+.+.++..+..+.-.+..... +..-.|.-..
T Consensus 660 ~s~e~~---------~-q~gLaE~~ir~akd~--~~~gf~~kavd~~eksie~f~~~l~h~~~----~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 660 FSLERT---------G-QNGLAESVIRDAKDS--AITGFQKKAVDFFEKSIESFIVSLIHSLQ----SDRLQWIVASDAC 723 (1238)
T ss_pred HHHHHH---------h-hhhHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhh----hhHHHHHHHhHHH
Confidence 110100 0 011122233432221 23344445555555544443333221100 0000110000
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHh--------cCCHHHHH
Q 017532 174 ---------------------------------------------------IFVLNCLIGYHLS--------SKEYNVCF 194 (370)
Q Consensus 174 ---------------------------------------------------~~~~~~la~~~~~--------~g~~~~A~ 194 (370)
+..++++|..|++ +.+-..|+
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 2233444443333 12223455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e 274 (370)
..+.++++... ++...|+.||-+ ...|.+.-|..+|-+...+ +|.. ...|.|+|.++....+++.
T Consensus 804 ~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s------------ep~~-~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 804 RCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS------------EPTC-HCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc------------cccc-hhheeccceeEEecccHHH
Confidence 55555555555 555555555544 3335555555555555422 2222 4455566666666666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
|...|.++..++|.|...|...+.+....|+.-+++..+..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 66666666666666666666556555566655555555555
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=66.67 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----H
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI----V 291 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~----~ 291 (370)
|......|+++.|++.|.+++.++|.. ..+++|++..+.-+|+.++|+..+++++++..+.. .
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r-------------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacq 116 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER-------------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQ 116 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc-------------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHH
Confidence 344444555555555555555444332 33444555555555555555555555555432211 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
++..+|..|...|+.+.|...|+.+-++..+
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 3445555555555555555555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-06 Score=74.97 Aligned_cols=107 Identities=16% Similarity=-0.022 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNG--LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
|..+.-++..|+|..|...|..-++.+|. ..+.+++.||.+++.+|++++|...|..+.+-.+++ ..-
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------~KA---- 214 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------PKA---- 214 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------CCC----
Confidence 45556667778888888888888887771 234677788888888888888888887777654443 222
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
.+.++-+|.+...+|+.++|...|+++++..|....+..
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 344666777777788888888888887777777665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-05 Score=68.96 Aligned_cols=232 Identities=13% Similarity=0.077 Sum_probs=154.2
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.|+..+.=--+.++..|.|...+.-... +- ..| ......-...+-.-++-+.-...+.......
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~----~~-~~~---lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~-------- 102 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKE----GK-ATP---LQAVRLLAEYLELESNKKSILASLYELVADS-------- 102 (299)
T ss_pred chhHHHHHHHHHHHHccccccccccccc----cc-CCh---HHHHHHHHHHhhCcchhHHHHHHHHHHHHhh--------
Confidence 4555566677888899999888743222 10 112 3333322333444455555555444442110
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL 185 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (370)
..++. ...+++.+.+++..|++++|++.+.... ... +.-.-..++.
T Consensus 103 -------~~~sn--~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE------------------------~~Al~VqI~l 148 (299)
T KOG3081|consen 103 -------TDGSN--LIDLLLAAIIYMHDGDFDEALKALHLGE-NLE------------------------AAALNVQILL 148 (299)
T ss_pred -------ccchh--HHHHHHhhHHhhcCCChHHHHHHHhccc-hHH------------------------HHHHHHHHHH
Confidence 11111 1245666777889999999988765521 111 1112335788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
++.+++-|...++++...+. ..++..||..|.. .+++.+|.-+|+..-. ...|. ....+.
T Consensus 149 k~~r~d~A~~~lk~mq~ide---d~tLtQLA~awv~la~ggek~qdAfyifeE~s~-----------k~~~T--~~llnG 212 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDE---DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----------KTPPT--PLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----------ccCCC--hHHHcc
Confidence 88999999999999988755 4566666666654 3467888888988863 12332 345678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhCCCc
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE-NALERVPTV 323 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~-~al~~~p~~ 323 (370)
.+.|.+.+|+|++|...++.++..+++++.++.|+.++....|+..++.+-+- +....+|+.
T Consensus 213 ~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 213 QAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999988876554 455556764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-07 Score=64.40 Aligned_cols=70 Identities=23% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
|..+|++.+++++|++++++++.+.|+ . ...+..+|.+++..|++++|+..|+++++.+|+++.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------------~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD------------D-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc------------c-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 357899999999999999999976443 3 667888999999999999999999999999999988766
Q ss_pred HHH
Q 017532 295 NKA 297 (370)
Q Consensus 295 nla 297 (370)
.++
T Consensus 68 ~~a 70 (73)
T PF13371_consen 68 LRA 70 (73)
T ss_pred HHH
Confidence 554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=76.88 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=136.8
Q ss_pred HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 74 TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 74 ~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
+.-|++-.+|++|+..+...++..+ +. . .--.+.+.++++..++..|-+-++.+-...++.
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p--------------~~--r---AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~ 77 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSP--------------RS--R---AGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL 77 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCc--------------cc--h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 4567889999999998876644321 00 0 112345677777777777777666654433332
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017532 154 LARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
. ...+--+..+++.+.+..|+.....+..... -....+..-+-+..+.||+..+....+
T Consensus 78 ~--------------------qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~-L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 78 E--------------------QYRLYQAQSLYKACIYADALRVAFLLLDNPA-LHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred H--------------------HHHHHHHHHHHHhcccHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcccccCcchHHHHH
Confidence 1 1112334577888999999999888754322 223344455677788899998888877
Q ss_pred HHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 234 RVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 234 ~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
+.- . ..+ +...++.|.+.++.|+|++|+.-|+.+++...-++.+-+|+|.|++..|+++.|+++.
T Consensus 137 Qlp----~-------en~----Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 137 QLP----S-------ENE----ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred hcc----C-------CCc----cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 653 1 111 5567889999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHh
Q 017532 314 ENALER 319 (370)
Q Consensus 314 ~~al~~ 319 (370)
.++++.
T Consensus 202 SEIieR 207 (459)
T KOG4340|consen 202 SEIIER 207 (459)
T ss_pred HHHHHh
Confidence 777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=74.14 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND-- 289 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-- 289 (370)
.|..|.-+++.|||.+|+..|..-++..|++ ... ..+++.+|.+++.+|+|++|...|..++...|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s------~~~----~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS------TYT----PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------ccc----chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC
Confidence 6888999999999999999999999876664 222 3456779999999999999999999999987665
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 -IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 -~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+++-+|.+...+|+.++|...|+++++..|+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999999999986
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-07 Score=63.63 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=56.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
++..|++++|++.|++++...|++ ..+++.+|.+++..|++++|...+++++..+|+++.++.-++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-------------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-------------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 357899999999999999765442 6678889999999999999999999999999998877766653
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-06 Score=68.23 Aligned_cols=101 Identities=10% Similarity=-0.077 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
...+..|--++..|++++|..+|+-+...++ .++..+..||.++...|++++|+..|..+..+..+++ .|
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-------~p-- 107 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-------RP-- 107 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-------Cc--
Confidence 4456777888999999999999999999999 8899999999999999999999999999987755431 22
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+..|.|++..|+.++|..+|+.+++ .|.+.
T Consensus 108 ----~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 108 ----VFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred ----cchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 45689999999999999999999998 45543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-07 Score=81.29 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-..|+-|+++|+|++|+.+|.+++.+.+.+ ...+.|++..|++..+|..|...++.++.++-....+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-------------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA 167 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHN-------------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA 167 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCC-------------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 345899999999999999999999654432 3446789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|..++.+-..+|...+|.+.++.++++.|+.
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 9999999999999999999999999999986
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=66.08 Aligned_cols=131 Identities=12% Similarity=0.007 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
-.+.|++.+.+.|++.+|...|++++.---.+++..+..+++..+..+++..|...+++..+..+.. ..|+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-------r~pd-- 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-------RSPD-- 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------CCCC--
Confidence 3457888999999999999999999864333788889999999999999999999999998754432 1222
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.....|.++...|++.+|...|+.++...|. +.+....+..+.++|+.++|...+..+..
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2345789999999999999999999998875 66777789999999999999887766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-06 Score=73.92 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
-+..||.+|+..|+++.|...|.+++++.| ++++.+..+|.++..+.+ ..++...|++++.+. |
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D------------~ 224 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD------------P 224 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC------------C
Confidence 345899999999999999999999999999 999999999988776543 468999999999643 3
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+. ..+.+.+|..++.+|+|.+|+..++.++...|.+.
T Consensus 225 ~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 225 AN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 33 56677899999999999999999999999986543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-05 Score=77.59 Aligned_cols=140 Identities=15% Similarity=0.070 Sum_probs=102.7
Q ss_pred hCCCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-------
Q 017532 202 GRGNGLDPILV--SKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG------- 269 (370)
Q Consensus 202 ~~~~~~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~------- 269 (370)
...| .+..+| +..|.-++..++ ++.|+.+|++++++ +|++ +.++-.++.++...
T Consensus 331 ~~~~-~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------------dP~~-a~a~A~la~~~~~~~~~~~~~ 396 (517)
T PRK10153 331 QGLP-HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------------EPDF-TYAQAEKALADIVRHSQQPLD 396 (517)
T ss_pred ccCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------------CCCc-HHHHHHHHHHHHHHHhcCCcc
Confidence 4445 666555 667888877665 78999999999965 4444 55666666666443
Q ss_pred -CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchh
Q 017532 270 -KDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSD 346 (370)
Q Consensus 270 -g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~ 346 (370)
++...+....++++.. +|.++.++.-+|..+...|++++|+..+++|+.++|+ ...++.++.+|++..+ .+
T Consensus 397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~--~~ 470 (517)
T PRK10153 397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGD--NR 470 (517)
T ss_pred HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCC--HH
Confidence 2345667777776664 7888899999999999999999999999999999995 4578889999986544 56
Q ss_pred hHHHHHHHHhhhCCC
Q 017532 347 IKRTLSSWIGRVAPD 361 (370)
Q Consensus 347 ~~~~ll~~~~~~~~d 361 (370)
++.+..+.--+..|.
T Consensus 471 eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 471 LAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHhcCCC
Confidence 666665544444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=70.65 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|..|-..|-+.-|.-.+.+++.+.| .-+.+++.+|.-+...|+++.|.+.|+..+++ +|.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------------Dp~ 131 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------------DPT 131 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------------CCc
Confidence 35677788888888888888888999999999 88888999998888899999999999988854 444
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
. ..+..|+|..++--|++.-|...+.+--..||+||
T Consensus 132 y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 132 Y-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred c-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 4 66778888888888888888888888777777765
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-06 Score=75.46 Aligned_cols=102 Identities=8% Similarity=0.027 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
..|+-|+++|.|++||.+|.+.+..+| .++..+.+.+..|++...|..|+..++.|+.+. ... ..+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------------~~Y-~KA 167 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------------KLY-VKA 167 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------------HHH-HHH
Confidence 578899999999999999999999999 999999999999999999999999999999653 333 667
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
|..+|..-+..|...||.+.++.++++.|++....-
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHH
Confidence 777999999999999999999999999999765443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-06 Score=68.84 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGL----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.-|+-++..|+|++|..-|..++..-|.. ...++.+.|-+.++++.++.|+..+.+++++. |..
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------------pty 167 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------------PTY 167 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------------chh
Confidence 45678889999999999999999998822 23567888999999999999999999999654 433
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
..++.-++.+|-++.+|++|++.|.++++.+|....+.-
T Consensus 168 -~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 168 -EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred -HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 445556899999999999999999999999998765543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-05 Score=59.13 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-|..+...|+.+.|++.|.+++..-| ..+.++++.+..+.-+|+.++|..-+++++++..+. .... ..++
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--------trta-cqa~ 118 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--------TRTA-CQAF 118 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--------chHH-HHHH
Confidence 34456677999999999999999999 999999999999999999999999999999986542 2222 6788
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..+|.+|...|+-+.|...|+.+.++...
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999999999887654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00017 Score=61.52 Aligned_cols=150 Identities=18% Similarity=0.166 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGF-IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+...+..+...+++..++..+..++...+ .........+. ++...|+++.|...|++++...+. ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~ 165 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDP-DPDLAEALLALGALYELGDYEEALELYEKALELDPE---------LNE 165 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------ccc
Confidence 4555677788888999999999999999887 55444555555 899999999999999999752210 001
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
. .......+..+...+++++|+..+.+++...+. ....+.+++.++...+++++|+..+..++...|.. ......
T Consensus 166 ~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 241 (291)
T COG0457 166 L-AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN---AEALYN 241 (291)
T ss_pred h-HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc---HHHHhh
Confidence 1 444555666688899999999999999999999 68999999999999999999999999999999873 455666
Q ss_pred HHHHHH
Q 017532 333 LCSMYE 338 (370)
Q Consensus 333 l~~lye 338 (370)
++..+.
T Consensus 242 ~~~~~~ 247 (291)
T COG0457 242 LALLLL 247 (291)
T ss_pred HHHHHH
Confidence 666665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.1e-06 Score=76.78 Aligned_cols=63 Identities=5% Similarity=-0.182 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI---LVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
...++++|..|...|+|++|+..|+++++++| ++.. +++++|.+|..+|++++|+.+|+++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666777777777777666666 5553 366666666666776667666666664
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.7e-05 Score=66.69 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
.++..++..+..++.++++++.|+.+++... .+|+ .+...||..+-+..|+++|.-+.-+|.++...-.- ..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l---~d 199 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL---KD 199 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc---Cc
Confidence 5666789999999999999999999988754 1232 45678999999999999999999999988654210 12
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.+...+..+.+.++..+..+|+..+|.++.+++.++. +-......-+|.+|...|+.+.|..-|+.|+....
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 2333457778889999999999999999999997762 33445667789999999999999999999987643
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-05 Score=65.97 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH------HHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF------RNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
.++..-|+-++..|++.+|...|..|+-...+-.. ...+.+|++ ..-.+.|.+.|+...|+|-++++....++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l-kEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQL-KEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566677777777777777776543322100 001334433 24567889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 284 ERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 284 ~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+|.|..+|+.+|.+....-+.++|...|.++++++|..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999999999999999999999975
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.7e-07 Score=52.38 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 017532 278 EYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311 (370)
Q Consensus 278 ~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~ 311 (370)
+|+++|+++|+++.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999974
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.6e-06 Score=68.35 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..++..|..|-..|=..-|.-.|.+++.+.| .. ..+.+.+|..+...|+|+.|.+.|..++++||.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P------------~m-~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRP------------DM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCC------------Cc-HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 45566678888888888899999999996544 33 566788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+--+..|+|+.+++-|++.-|.+.+.+-.+.+|++
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999985
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00014 Score=70.53 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
..+.+.|..+++...+..| +..-.+...|+++...|++++|++.|++++... ..-+.+....+..+|.++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP-~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q---------~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP-NSALFLFFEGRLERLKGNLEEAIESFERAIESQ---------SEWKQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch---------hhHHhHHHHHHHHHHHHH
Confidence 4677889999999999999 888888888999999999999999999988421 223445567788999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCH-------HHHHHHHHHHHHhCC
Q 017532 267 LVGKDYVSAVREYEECIERDYNDI-VAINNKALCLMYLRDL-------SDSIKVLENALERVP 321 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~-~~~~nla~~~~~~g~~-------~~A~~~l~~al~~~p 321 (370)
+.+.+|++|.++|.+.++.+.... ...+..|.|+...|+. ++|.+.+.++-....
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999876543 4556778999999999 999999988876544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-05 Score=71.31 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-.|-......++++.|+..|++..+ .+|+. ...++.+++..++..+|+..+.+++..+|.+...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~------------~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L 236 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRE------------RDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL 236 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHh------------cCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 3445566667899999999999883 34543 3448899999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
+...|..++..++++.|++..++++...|+. -..++.|+.+|....+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999997 7899999999985444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00026 Score=58.28 Aligned_cols=125 Identities=11% Similarity=0.003 Sum_probs=97.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
.++=|.+.+..-..+.+...| ...-.+.||......|++.+|..+|++++.- .. ..++ .....++.
T Consensus 67 ~q~ldP~R~~Rea~~~~~~Ap--Tvqnr~rLa~al~elGr~~EA~~hy~qalsG---~f-----A~d~----a~lLglA~ 132 (251)
T COG4700 67 QQKLDPERHLREATEELAIAP--TVQNRYRLANALAELGRYHEAVPHYQQALSG---IF-----AHDA----AMLLGLAQ 132 (251)
T ss_pred HHhcChhHHHHHHHHHHhhch--hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---cc-----CCCH----HHHHHHHH
Confidence 334455555555555555555 2445688899999999999999999999841 10 2333 44677899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYN--DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+..+++.+|...+++..+.+|. .+.....+|.++...|++.+|...|+.++...|++
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 999999999999999999999875 34556667889999999999999999999999986
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.001 Score=56.71 Aligned_cols=142 Identities=14% Similarity=0.096 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.-+.-.++.++.++|+..+++++++.. +- ......+|.+|..- .++++|+.+|+++-+-....+. ...
T Consensus 78 veA~~cykk~~~~eAv~cL~~aieIyt-~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees----~ss 152 (288)
T KOG1586|consen 78 VEAANCYKKVDPEEAVNCLEKAIEIYT-DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES----VSS 152 (288)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHH-hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh----hhh
Confidence 333444566799999999999998876 22 23345788888765 8999999999999876554311 111
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV-------AINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~-------~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
. .....-.+...-..|+|.+|+..|+++....-++.. .+..-|.|++-..+.--+...+++-.+++|.++
T Consensus 153 A---NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 153 A---NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 1 222333566667789999999999999877655543 345668888888999999999999999999986
Q ss_pred hhHH
Q 017532 325 LNET 328 (370)
Q Consensus 325 ~~~~ 328 (370)
....
T Consensus 230 dsRE 233 (288)
T KOG1586|consen 230 DSRE 233 (288)
T ss_pred ccHH
Confidence 4443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00052 Score=57.00 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 192 VCFDLMNESIGRGNGLDPI--LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
+.+...++.+..++..... +...++..+...|++++|+..++.++.. ..|.++...+...+|.+.+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----------t~De~lk~l~~lRLArvq~q~ 139 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----------TKDENLKALAALRLARVQLQQ 139 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------chhHHHHHHHHHHHHHHHHHh
Confidence 5666666666666523332 2356788899999999999999999832 456666677788899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
|++++|+..+....+. .-.+.....+|.++...|+-++|++.|++++..++++...+.+-+
T Consensus 140 ~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqm 200 (207)
T COG2976 140 KKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQM 200 (207)
T ss_pred hhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHh
Confidence 9999999888765321 112345667899999999999999999999999876543333333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0027 Score=61.61 Aligned_cols=182 Identities=12% Similarity=-0.034 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
...+..+|..|-..|+.+.|..+++++.+..-.. -...|..-|..-++..+++.|.+..++|..+........-...
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 3556678888888888888888888887754411 1355666677777778888888888887654222110000001
Q ss_pred hHHH-----HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 251 EVEF-----RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 251 ~p~~-----~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.|.. -..+|...+..--..|=++.-...|++++++.--.|....|.|..+....-++++.+.|++.|.+.+-+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1111 13455556666667777777788888888887777888888888888888888888888888888765433
Q ss_pred hHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 326 NETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
.+-..-.|.....=.+..+.+..+.|.++.
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 222222222222222334446677776654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00044 Score=62.57 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=133.6
Q ss_pred cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017532 118 VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLM 197 (370)
Q Consensus 118 ~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 197 (370)
.++...+..+..+..++.++++++.|+.+++..... .+ ...+ -+++-.++..+-+.+|+++|..+.
T Consensus 120 ~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~-----~D---~~LE------lqvcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 120 LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN-----DD---AMLE------LQVCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc-----CC---ceee------eehhhhHHHHHHHHHhhhHHhhhh
Confidence 344444444444556666677777666655433221 00 0011 257778999999999999999999
Q ss_pred HHHHhCCC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 198 NESIGRGN---GL------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 198 ~~~l~~~~---~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
.++.++-. -. ...+++.++-.+...|.+-+|.++.+++.++.-.. ...+.. +.....+|.+|..
T Consensus 186 ~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~------Gdra~~-arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 186 CKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH------GDRALQ-ARCLLCFADIYRS 258 (518)
T ss_pred HhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh------CChHHH-HHHHHHHHHHHHh
Confidence 88876543 01 22456788888899999999999999998875432 223333 6777789999999
Q ss_pred cCCHHHHHHHHHHHHhhC--CC----CHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHhCCCcc---hhHHHHHHHH
Q 017532 269 GKDYVSAVREYEECIERD--YN----DIVAINNKALCLMYLRDLSD-----SIKVLENALERVPTVA---LNETLVVNLC 334 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~--p~----~~~~~~nla~~~~~~g~~~~-----A~~~l~~al~~~p~~~---~~~~~~~nl~ 334 (370)
.|+.+.|..-|+++.... -. ...++...|.|+....-..+ |++.-+++++.....- .--.....++
T Consensus 259 ~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla 338 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLA 338 (518)
T ss_pred cccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999997653 12 23456666777766655555 8888888877643321 1234456777
Q ss_pred HHHH
Q 017532 335 SMYE 338 (370)
Q Consensus 335 ~lye 338 (370)
.+|.
T Consensus 339 ~iYr 342 (518)
T KOG1941|consen 339 SIYR 342 (518)
T ss_pred HHHH
Confidence 8884
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00067 Score=60.00 Aligned_cols=148 Identities=11% Similarity=0.049 Sum_probs=106.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-+.-....|++.+|...+..++...| .+..+...++.++...|+.+.|...+...-.- ..+... ...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~----------~~~~~~--~~l 206 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ----------AQDKAA--HGL 206 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc----------chhhHH--HHH
Confidence 34456678999999999999999999 88889999999999999999999998775311 111111 111
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
...-..+.......+ +..+++.+..+|+|..+.+.+|..+...|+.++|.+.+-..++.+-.. ....+.-.|-.++++
T Consensus 207 ~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~ 284 (304)
T COG3118 207 QAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHh
Confidence 011122223333333 244677788899999999999999999999999999999999987654 224455555555555
Q ss_pred ccC
Q 017532 340 AYV 342 (370)
Q Consensus 340 ~~~ 342 (370)
...
T Consensus 285 ~g~ 287 (304)
T COG3118 285 FGP 287 (304)
T ss_pred cCC
Confidence 544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=50.37 Aligned_cols=41 Identities=20% Similarity=-0.059 Sum_probs=33.6
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
++..+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45668888888888888888888888888888888887764
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.6e-05 Score=62.48 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG----------KDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~----------g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
++.|.+.++...... |.. .+.+++-|..+..+ .-+++|+.-|++++.++|+...+++
T Consensus 7 FE~ark~aea~y~~n------------P~D-adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw 73 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN------------PLD-ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALW 73 (186)
T ss_dssp HHHHHHHHHHHHHH-------------TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHhC------------cHh-HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 466777777666432 222 44455556665554 3467889999999999999999999
Q ss_pred HHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCc
Q 017532 295 NKALCLMYLRD-----------LSDSIKVLENALERVPTV 323 (370)
Q Consensus 295 nla~~~~~~g~-----------~~~A~~~l~~al~~~p~~ 323 (370)
++|.++...+. |++|..+|++|+..+|++
T Consensus 74 ~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 74 CLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999977665 889999999999999986
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=68.45 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=81.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
-|..++.-.+|+.|+.+|.+++.+ +|.. ..-+.+.+.|+++.++++.+....+++++++|+.....+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~------------nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICI------------NPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhc------------CCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 366677778899999999999954 4444 556788999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 295 NKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+|.+++.+..+++||..+.++..+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999655
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=65.84 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
+-.-|+-|+...+|..|+.+|.+.+... ..+|++.+..|.|++-+.+..|+|-.|++.+.+++.++|.+..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---------c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKK---------CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhc---------CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 3445899999999999999999999631 3467766888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+++.-|.|++.+.++++|+..++..+..+-+
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999998877654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.001 Score=64.47 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=129.3
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHH--------------hhHhhHHhHHHHHHHH----------HHHHHHHHH
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARK--------------LAEKLEESVKSWKKRE----------IFVLNCLIG 182 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------------~~~~~~~~~~~~~~~~----------~~~~~~la~ 182 (370)
.++....|++.+-+..+.+++....+..... ..+..+.+-.+|.+.. +.++..-|+
T Consensus 354 kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 354 KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 3445666777777777777665443322110 1233445555665543 567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNG-----------------LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.-++..+++.|+.+++++...... .+..+|+..+......|-++.....|++++.+.-
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri----- 508 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI----- 508 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----
Confidence 888899999999999999754321 1235667777777888999999999999997632
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY--NDIVA---INNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p--~~~~~---~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
..|. +.+|.|+.+-....+++|.+.|++.+.+.+ +.... |....+.-+..-+++.|...|+++++..
T Consensus 509 ----aTPq----ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 509 ----ATPQ----IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred ----CCHH----HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 3453 467889999999999999999999999863 33334 4444555556678999999999999988
Q ss_pred CC
Q 017532 321 PT 322 (370)
Q Consensus 321 p~ 322 (370)
|.
T Consensus 581 pp 582 (835)
T KOG2047|consen 581 PP 582 (835)
T ss_pred CH
Confidence 83
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0026 Score=53.97 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIG--RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
......+..+...+++..+...+..... ..+ .....+...|..+...+++..++..+.++....+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 128 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLP-NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---------- 128 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----------
Confidence 3445666778888999999999999987 566 777888999999999999999999999998543321
Q ss_pred HHHHHHHHhHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-cchhH
Q 017532 253 EFRNLVSRNKAL-IYLVGKDYVSAVREYEECIERDY---NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT-VALNE 327 (370)
Q Consensus 253 ~~~~~~~~~~g~-~~~~~g~~~eA~~~~~~~l~~~p---~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~ 327 (370)
.......+. ++...|++++|...|++++..+| .....+...+..+...+++++|+..+.+++...+. . .
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 202 (291)
T COG0457 129 ---DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD---A 202 (291)
T ss_pred ---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc---h
Confidence 111222444 89999999999999999988777 45567777777788999999999999999999987 4 5
Q ss_pred HHHHHHHHHHHhc
Q 017532 328 TLVVNLCSMYELA 340 (370)
Q Consensus 328 ~~~~nl~~lyel~ 340 (370)
....+++..|...
T Consensus 203 ~~~~~~~~~~~~~ 215 (291)
T COG0457 203 EALLNLGLLYLKL 215 (291)
T ss_pred HHHHHhhHHHHHc
Confidence 6677777777643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00023 Score=70.51 Aligned_cols=131 Identities=18% Similarity=0.098 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHhhcCCccCC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNR------VEEMLNEGKFEDG 247 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~------a~~l~~~~~~~~~ 247 (370)
++-++.+..+++-+|+.++|-.+-++. .+-.+-|.||+.|...|++.+|+.+|.+ |+++++.+..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--- 1008 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--- 1008 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH---
Confidence 345677778888889999998887764 7778889999999999999999999887 4666666532
Q ss_pred ccchHHHHHHH-------HHhHHHHHHHcC-CHHHHHHHHHHH------Hh-----------------hCC-CCHHHHHH
Q 017532 248 LLSEVEFRNLV-------SRNKALIYLVGK-DYVSAVREYEEC------IE-----------------RDY-NDIVAINN 295 (370)
Q Consensus 248 ~~~~p~~~~~~-------~~~~g~~~~~~g-~~~eA~~~~~~~------l~-----------------~~p-~~~~~~~n 295 (370)
+..+...+ ...-+..|-..| +++.|+..|.++ ++ ++| .|+..++.
T Consensus 1009 ---~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1009 ---KDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred ---HHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 00000000 011122233333 445555544443 11 133 47788888
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 017532 296 KALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 296 la~~~~~~g~~~~A~~~l~~a 316 (370)
.+.-+....+|++|+..+-.+
T Consensus 1086 cadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 888888889999998876544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=46.84 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+|.++|.+++.+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.7e-05 Score=61.51 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD----------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
|+.|.+.++.....+| .+++.+++-|.+++.+.+ +++|++-|++|+.+ +|+. ..++
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------------~P~~-hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------------NPNK-HDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------------TT--HHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------------CCch-HHHH
Confidence 6788899999999999 999999888888876543 34566666667755 4444 6777
Q ss_pred HhHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKD-----------YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 260 ~~~g~~~~~~g~-----------~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.++|.++...+. |++|.++|+++...+|++......|-.+ .+|-+...++.+.
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHH
Confidence 788888877654 8889999999999999988766655544 2455555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.017 Score=53.18 Aligned_cols=254 Identities=12% Similarity=0.030 Sum_probs=162.6
Q ss_pred HHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCccc
Q 017532 39 ATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMV 118 (370)
Q Consensus 39 ~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (370)
.-.|+|+.|-+.|+.|++ +|.-.+.-+...-..--++|..+-|...-...-... ...
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A------------------p~l 187 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA------------------PQL 187 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc------------------cCC
Confidence 345788888877777653 454323222221122335666666666555542111 125
Q ss_pred chhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017532 119 PFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMN 198 (370)
Q Consensus 119 ~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 198 (370)
+|..+.+.... +..|+++.|+..+..... ...+.....+ ...+..+...+..++ .-+...|...-.
T Consensus 188 ~WA~~AtLe~r-~~~gdWd~AlkLvd~~~~--~~vie~~~ae----------R~rAvLLtAkA~s~l-dadp~~Ar~~A~ 253 (531)
T COG3898 188 PWAARATLEAR-CAAGDWDGALKLVDAQRA--AKVIEKDVAE----------RSRAVLLTAKAMSLL-DADPASARDDAL 253 (531)
T ss_pred chHHHHHHHHH-HhcCChHHHHHHHHHHHH--HHhhchhhHH----------HHHHHHHHHHHHHHh-cCChHHHHHHHH
Confidence 66666554433 677888888877765321 1111111000 011122222333333 356889999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHH
Q 017532 199 ESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVRE 278 (370)
Q Consensus 199 ~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~ 278 (370)
+++++.| +....-..-++.++..|++.++-+.++.+.+. .-+|++ . ...++.+.|+. ++.-
T Consensus 254 ~a~KL~p-dlvPaav~AAralf~d~~~rKg~~ilE~aWK~----------ePHP~i-a-----~lY~~ar~gdt--a~dR 314 (531)
T COG3898 254 EANKLAP-DLVPAAVVAARALFRDGNLRKGSKILETAWKA----------EPHPDI-A-----LLYVRARSGDT--ALDR 314 (531)
T ss_pred HHhhcCC-ccchHHHHHHHHHHhccchhhhhhHHHHHHhc----------CCChHH-H-----HHHHHhcCCCc--HHHH
Confidence 9999999 87777777799999999999999999999964 234544 2 23344555554 4444
Q ss_pred HHH---HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHH
Q 017532 279 YEE---CIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 279 ~~~---~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
+++ ...+.|++.......+.+.+..|++..|..--+.+....|. +++..-|+.+-|-.+. +..+-+.++.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr----es~~lLlAdIeeAetG-Dqg~vR~wlA 387 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR----ESAYLLLADIEEAETG-DQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch----hhHHHHHHHHHhhccC-chHHHHHHHH
Confidence 444 44567999999999999999999999999999999999997 7888889999885433 3344444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0028 Score=55.21 Aligned_cols=185 Identities=15% Similarity=0.110 Sum_probs=115.6
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHH--HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH--LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~--~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
-...+...++.|+|.+|++.++.+..+ .|.++ .......+.++.+.+.+++|...+++...+.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----------- 101 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----------- 101 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----------
Confidence 456888999999999999999997543 45432 2233445889999999999999998886543
Q ss_pred CCCCCCCcccchhHHHHHHHcCcc--c---CCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIK--L---SNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~--~---g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
|..+...=.+.++.+.-..... . ....+|+..+.+++...+.- .... ....-+.....+++.--..+|..
T Consensus 102 --P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~-dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 102 --PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAP-DAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223444433211111 1 11233444444444332210 0000 01112233334444445578899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNG--LDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
|.+.|.|..|+.-++.+++..|. .-..++..+..+|..+|-.++|.+.-.-.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 99999999999999999999872 23467888899999999999887765433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.5e-05 Score=45.44 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 368999999999999999999999999999996
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.9e-05 Score=45.13 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
++..+|.+++..|++++|+++|+++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.016 Score=54.66 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=156.0
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHH------HHHHHH--HHHhhhcCHHHHHHHhhhcCC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLT------YLAYNT--LALMKLRRFDEAQQELDSLED 95 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~------~~~~~~--~al~~l~~~~~A~~~~~~~~~ 95 (370)
||.|-+.=..-++..-..|+-+..-+.|++++.. ..|.+.-. ++|++- ..=+-....+.+..+++...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan---vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN---VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5556555555566666779999999999998643 24543222 222221 223456788888888888877
Q ss_pred CCCCCCcccccCCCCCCCCCcccchh-HHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHH
Q 017532 96 FNSSGYQYETYPHIYPNRTGSMVPFS-LRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREI 174 (370)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
+.+ .+. ..|+ +.++.|....+.-+...|-..+=.++..|+.. ++++
T Consensus 395 lIP-------------Hkk---FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------------KlFk---- 441 (677)
T KOG1915|consen 395 LIP-------------HKK---FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------------KLFK---- 441 (677)
T ss_pred hcC-------------ccc---chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------------hHHH----
Confidence 653 111 1121 12333433333344444433333333333321 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
....+-++.++++....+|++-+.-+| .+..+|..-|.+-..+||.|.|...|+-|++. .....|.+
T Consensus 442 ----~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~q--------p~ldmpel 508 (677)
T KOG1915|consen 442 ----GYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQ--------PALDMPEL 508 (677)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC--------cccccHHH
Confidence 223455567999999999999999999 99999999999999999999999999999842 11345654
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HhC-----------CHHHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM-----YLR-----------DLSDSIKVLENALE 318 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~-----~~g-----------~~~~A~~~l~~al~ 318 (370)
.|...-.--+..|.++.|...|++.++..+... +|...|.--. ..| ....|..+|++|..
T Consensus 509 ---lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 509 ---LWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ---HHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 233333344578999999999999999987655 6655554332 344 56788888988876
Q ss_pred hC
Q 017532 319 RV 320 (370)
Q Consensus 319 ~~ 320 (370)
..
T Consensus 585 ~~ 586 (677)
T KOG1915|consen 585 YL 586 (677)
T ss_pred HH
Confidence 53
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00027 Score=58.62 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
...++..+...+++++|+..++.++.... +. ..+-.+|+++..+.|.+|+|.+.++... ++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------------~~~ 156 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIK--------------EES 156 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------------ccc
Confidence 34677888999999999999999987554 22 2344789999999999999999998775 233
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+.......+|.++...|+-++|+..|+++++.+++.+
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3244455689999999999999999999999975543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0056 Score=64.32 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=156.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchH--HHHHHHHH-HHHHhhhcCHHHHHHHhhhcCCCCCCC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHH--HLTYLAYN-TLALMKLRRFDEAQQELDSLEDFNSSG 100 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~--~~~~~~~~-~~al~~l~~~~~A~~~~~~~~~l~~~~ 100 (370)
+|+.--.-.+=+.-.++.+..++|-+.++++...+ |+.. .....|+. +.....-|--+...+.|.++-.-
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI---N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTI---NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---- 1526 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC---CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----
Confidence 66666666677888999999999999999987653 4432 22222221 11112223333444445544211
Q ss_pred CcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHH
Q 017532 101 YQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCL 180 (370)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 180 (370)
+.|.....-+..++...+..++|.+.+..+++.+++. .+.| ...
T Consensus 1527 ----------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------------~~vW--------~~y 1570 (1710)
T KOG1070|consen 1527 ----------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------------RKVW--------IMY 1570 (1710)
T ss_pred ----------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------------hhHH--------HHH
Confidence 0111112222344455677788888887777666532 2344 467
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
+..+++..+-+.|..++.++++--| ..+.......+.+-++.||.+.+...|+-.+.- +|.. .+.|
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------------yPKR-tDlW 1637 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------------YPKR-TDLW 1637 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------------Cccc-hhHH
Confidence 7888999999999999999999888 247888999999999999999999999999953 3333 7778
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINNKALCLMYL 303 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~nla~~~~~~ 303 (370)
+.....=++.|+.+.+...|++++.+. |.....++..-.-|.+.
T Consensus 1638 ~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1638 SVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 888888889999999999999999875 77777888887777765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0011 Score=53.69 Aligned_cols=64 Identities=20% Similarity=0.102 Sum_probs=54.6
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3445557888899999999999999999999999999999999999999999999999987543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.002 Score=53.94 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
...+..+|..|++.|+.+.|+..|.++..... ......+..+.++.+..|++.....+..++..+... ..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-------~~d 108 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-------GGD 108 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-------cch
Confidence 46778999999999999999999999877543 122356688889999999999999999999987665 234
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
++.+.......|..++..++|.+|.+.|-.++...
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 55445566668889999999999999988776443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.032 Score=52.03 Aligned_cols=148 Identities=13% Similarity=-0.008 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhcCCc------
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDPILVSKLGFIQMQVGDLEGAKKSFNRVEE-MLNEGKF------ 244 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~-l~~~~~~------ 244 (370)
..+...+.+..+.|.++.|...+.++....+. ..+.....-+.+.+..|+..+|+..++..+. .......
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 45667888899999999999999999886631 2466777889999999999999999988886 2221100
Q ss_pred -------------c-CCccchHHHHHHHHHhHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 245 -------------E-DGLLSEVEFRNLVSRNKALIYLVG------KDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 245 -------------~-~~~~~~p~~~~~~~~~~g~~~~~~------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
. ..........+.++..+|...... +..++++..|++++..+|....+++..|..+.+.=
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 0 001122233467777788877777 99999999999999999999999998887665432
Q ss_pred CH-----------------HHHHHHHHHHHHhCCC
Q 017532 305 DL-----------------SDSIKVLENALERVPT 322 (370)
Q Consensus 305 ~~-----------------~~A~~~l~~al~~~p~ 322 (370)
.. ..|+..|-+++...++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 307 ESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 22 2366666666666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.8e-05 Score=47.16 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.++..+|.++..+|++++|++.|+++++.+|++ ..++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhhh
Confidence 578899999999999999999999999999998 777777764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.002 Score=58.29 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ-VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
++..+.....+.+..+.|..+|.++.+... ....+|...|.+-.+ .++.+.|.+.|+.+++..+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------------ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------------ 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------------
Confidence 445556667777789999999999986655 667888888999777 677777999999999766552
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...|......+...|+.+.|...|++++..-|... .+|.....--..-|+++...++.+++.+..|+.
T Consensus 70 -~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 70 -PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 44566667788899999999999999998866555 577777777778899999999999999998874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=64.77 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH----------HhCCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNES----------IGRGN---------GLDPILVSKLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~----------l~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 234 (370)
..+|++.+..+...+|.+.|+++|+++ +..+| ..++.+|..-|.-....|+.|.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 567888888888999999999998875 33444 23556777778888888999999999988
Q ss_pred HHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 235 VEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 235 a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
|.. |+.+-.+.+.+|+.++|-.+-++ ..|..+-+.+|..|...|++.+|+..|.
T Consensus 938 A~D---------------------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 938 AKD---------------------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hhh---------------------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 862 23344456677888888665544 4677788889999999999999998887
Q ss_pred HHHH
Q 017532 315 NALE 318 (370)
Q Consensus 315 ~al~ 318 (370)
+|-.
T Consensus 992 rAqa 995 (1416)
T KOG3617|consen 992 RAQA 995 (1416)
T ss_pred HHHH
Confidence 7643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0021 Score=60.85 Aligned_cols=128 Identities=10% Similarity=0.022 Sum_probs=97.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc------CCc------cchHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE------DGL------LSEVE 253 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~------~~~------~~~p~ 253 (370)
+..+.+.-++.-+++++++| +.+.++..|+. ....-..+|+.+|+++++..+..... .+. ..+.+
T Consensus 180 RERnp~aRIkaA~eALei~p-dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINP-DCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhh-hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 34788888999999999999 88888877664 12344788999999988765543210 000 00111
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN--DIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
....+...+|+|..+.|+.+||++.|+.+++..|. +..++.|+..+++..+++.++...+.+-
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11445566899999999999999999999988775 4579999999999999999999999885
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=42.90 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+++.+|.++...|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999973
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=65.23 Aligned_cols=123 Identities=10% Similarity=0.046 Sum_probs=100.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
..+++..|+..+.++++..| +...+....|.++.++|+.++|..+++..... +.+. ...+-.+-.|
T Consensus 21 d~~qfkkal~~~~kllkk~P-n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----------~~~D---~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHP-NALYAKVLKALSLFRLGKGDEALKLLEALYGL----------KGTD---DLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----------CCCc---hHHHHHHHHH
Confidence 45899999999999999999 88888888999999999999999777665422 1121 2334447889
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|..+|++++|...|++++..+|. ....+.+=.+|.+-+.|.+-.+.--+..+..|+.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999 7777777788888888887777766777777775
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0042 Score=57.72 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHhhcC
Q 017532 175 FVLNCLIGYHLS---SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ---------VGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 175 ~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~a~~l~~~~ 242 (370)
.+.+..|..+.+ .|+.++|+.++..++......+++++..+|++|-. ...+++|+..|.++.++.++
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~- 258 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD- 258 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-
Confidence 345566777777 89999999999996555444899999999999943 23478999999999965432
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH--------hh----CCCCHHHHHHHHHHHHHhCCHHHHH
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI--------ER----DYNDIVAINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l--------~~----~p~~~~~~~nla~~~~~~g~~~~A~ 310 (370)
...-+|.+.++...|.-.+.....++.. +. .-.+...+-.++.+..-.|++++|+
T Consensus 259 -------------~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~ 325 (374)
T PF13281_consen 259 -------------YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI 325 (374)
T ss_pred -------------ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence 3344667778888886555544444433 11 1234455567788888899999999
Q ss_pred HHHHHHHHhCCCc
Q 017532 311 KVLENALERVPTV 323 (370)
Q Consensus 311 ~~l~~al~~~p~~ 323 (370)
+.+++++...|..
T Consensus 326 ~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 326 QAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHhhcCCcc
Confidence 9999999998764
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=60.98 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=80.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-|+.++..++|..|+..|.++|.++| ..+..+.+.+.+++++.+++.+.....+++++ +|+. ...+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql------------~~N~-vk~h 81 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQL------------DPNL-VKAH 81 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------------ChHH-HHHH
Confidence 34566667899999999999999999 88888899999999999999999999999954 5665 7788
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
+.+|.+.+....|++||..+.++..+
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHH
Confidence 88999999999999999999999655
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.02 Score=49.08 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-HH--
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG-KDYVSAVREYEECIERDYND-IV-- 291 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~p~~-~~-- 291 (370)
+.-.++.+++++|+.++++++++..+. ..-...+.-++.+|.+|-.. .++++|+.+|+++-+....+ ..
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~-------Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDM-------GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhh-------hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 333445679999999999999885542 11111144456788888766 89999999999998775332 22
Q ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 292 ---AINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 292 ---~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+...|......++|.+|+..|+++....-++
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23334555567899999999999988765443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.012 Score=55.43 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=109.6
Q ss_pred hcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 186 SSKEYNVCFDLMNESIGRGN---GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
..+|.+.+..+|+..+++-| ...+.+|..-|.-..++-++..|.+.+..|+-.||.. --+ ...
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---------KlF-----k~Y 443 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---------KLF-----KGY 443 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---------hHH-----HHH
Confidence 56899999999999999888 1234667777888888999999999999999665542 111 112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
-.+-...++++...+.|++-++.+|.+-.+|...|..-..+|+.+.|..+|+-|+....-. . ..++...-.=+|. .+
T Consensus 444 IelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld-m-pellwkaYIdFEi-~~ 520 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD-M-PELLWKAYIDFEI-EE 520 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc-c-HHHHHHHhhhhhh-hc
Confidence 2334567899999999999999999999999999999999999999999999998764221 1 2233222222332 23
Q ss_pred CchhhHHHHHHHH
Q 017532 343 NHSDIKRTLSSWI 355 (370)
Q Consensus 343 ~~~~~~~~ll~~~ 355 (370)
+..++.+.+-+.+
T Consensus 521 ~E~ekaR~LYerl 533 (677)
T KOG1915|consen 521 GEFEKARALYERL 533 (677)
T ss_pred chHHHHHHHHHHH
Confidence 3445666555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.2e-05 Score=44.37 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017532 196 LMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKK 230 (370)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 230 (370)
+|+++|+.+| +++.+++++|.++...|++++|++
T Consensus 1 ~y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNP-NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999 999999999999999999999863
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=67.99 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
+-+...+..++|+.|+..|.++|+++| +.+..+.+.+..+++.+++..|+.-+.++++ .+|.. ...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldp-nca~~~anRa~a~lK~e~~~~Al~Da~kaie------------~dP~~-~K~ 74 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDP-NCAIYFANRALAHLKVESFGGALHDALKAIE------------LDPTY-IKA 74 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCC-cceeeechhhhhheeechhhhHHHHHHhhhh------------cCchh-hhe
Confidence 344566777999999999999999999 8888888889999999999999999999995 35665 777
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
+.-+|...+..+++.+|...|++.....|+++.+...+..|-
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888999999999999999999999999999998877666554
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0095 Score=56.14 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV--SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
+.++..+|...+.-+.|+.|...|..+.+.....+..+. .++|.+|++.|+-+. +|+-...+.+.+. .+...
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~nt---~s~ss 440 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED---LYKALDLIGPLNT---NSLSS 440 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCCC---CcchH
Confidence 567778888888899999999999999987663444443 678999999888554 4444333333321 11222
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC-CC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY-ND-----IVAINNKALCLMYLRDLSDSIKVLENALERV---PT 322 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p-~~-----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~---p~ 322 (370)
--.++.+++..|...+.++++.||...+++.++... .+ .-.+..++.+..-.|+..++.+....++... |+
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 223466788899999999999999999999998751 11 1234456777888999999999999888764 44
Q ss_pred cchhHHHHHHHHHHHHhccC
Q 017532 323 VALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 323 ~~~~~~~~~nl~~lyel~~~ 342 (370)
....-+...-+..+|.-+++
T Consensus 521 i~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 521 IPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred chHHHHHHHHHHHHHHHhCc
Confidence 42333333444556665555
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0009 Score=62.80 Aligned_cols=148 Identities=9% Similarity=0.041 Sum_probs=112.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-HHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF-RNLV 258 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~-~~~~ 258 (370)
.+..|+.+.+...+..-.+.++.... +.+..+...+..++-.|++.+|.+.+...---... +-...|.. ....
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~-----g~~~T~q~~~cif 285 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEA-----GGTITPQLSSCIF 285 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHHHHHHHHhcchHHHHHHHHhccccccc-----Cccccchhhhhee
Confidence 34456777888888888888887777 88888888899999999999999988664311111 11234443 2456
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIE-R--------DY---------NDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~-~--------~p---------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
|.|+|.+++..|.|.-+..+|.+++. . .| ..-..++|.|+.++..|+.-.|.++|.+++...
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 78999999999999999999999996 2 12 233688999999999999999999999999886
Q ss_pred CCcchhHHHHHHHHHH
Q 017532 321 PTVALNETLVVNLCSM 336 (370)
Q Consensus 321 p~~~~~~~~~~nl~~l 336 (370)
..+ ..+|..|+..
T Consensus 366 h~n---PrlWLRlAEc 378 (696)
T KOG2471|consen 366 HRN---PRLWLRLAEC 378 (696)
T ss_pred hcC---cHHHHHHHHH
Confidence 655 5556655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.07 Score=49.27 Aligned_cols=130 Identities=18% Similarity=0.080 Sum_probs=99.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-HHHHHHhHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF-RNLVSRNKAL 264 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~-~~~~~~~~g~ 264 (370)
+.|+.+.|+++-+++-..-| .-+.++...-...+..||++.|++..+...+..--. ....+. +...+...+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie------~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 166 RLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE------KDVAERSRAVLLTAKAM 238 (531)
T ss_pred hcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHH
Confidence 56999999999999999999 777777666667788999999999998865432110 111111 1222333344
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
... .-+...|...-.+++++.|+-..+-..-+.++++.|+..++-.+++.+.+..|.+
T Consensus 239 s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 239 SLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 333 3457889999999999999998888888999999999999999999999999976
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.095 Score=49.67 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGR---GN------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
..+.+++-+-+-.|++.+|++....+..- .| ...+.+.+.+|.-...-|.++.|+.+|..+.++..
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~----- 398 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE----- 398 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh-----
Confidence 45556777777889999999988888653 33 12345668889888889999999999999997533
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND----------IVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~----------~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
..+..+..-.++|.+|...|+-+.-.+.++. +.|.| ..+++-.|.-.+..+++.||...+.+
T Consensus 399 -----~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 399 -----SIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred -----HHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3334466778899999998886654444433 34542 24677788889999999999999999
Q ss_pred HHHhC
Q 017532 316 ALERV 320 (370)
Q Consensus 316 al~~~ 320 (370)
.++..
T Consensus 471 ~Lkma 475 (629)
T KOG2300|consen 471 TLKMA 475 (629)
T ss_pred HHhhc
Confidence 99875
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0022 Score=57.66 Aligned_cols=126 Identities=12% Similarity=0.000 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
+.++...|++.+|-...++++...| .+-.++...-.+++.+|+.+.-...+++++.... ..-|-. +.+.-
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--------~dlp~~-sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--------ADLPCY-SYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--------CCCcHH-HHHHH
Confidence 3455566788887777888888888 7666666666777778887777777777763211 123333 45555
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
..++++...|-|++|.+.-++++++||.|.-+....+-++...|++.++.+.+.+-
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 67777778888888888888888888877766666666666666666666666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=52.73 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=73.2
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHH-hh-HhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 017532 132 KLSNRQVGLDRFYELLDFVREKLARK-LA-EKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP 209 (370)
Q Consensus 132 ~~g~~~~al~~l~~ll~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 209 (370)
..|++..++..+..++..++...-.. .. .-.......+......+...++..+...|++++|+..+++++..+| .+.
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E 96 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP-YDE 96 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-H
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCH
Confidence 34566666666666554433222111 00 0011122233334456777888899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
.++..+..++...|+..+|+..|++..+...+
T Consensus 97 ~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 97 EAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00025 Score=66.47 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-..+.-.+..++++.|+..|.+|+++. |+. +..+-+++..+++.++|..|+..+.++++.+|....+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ld------------pnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~ 74 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELD------------PNC-AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKA 74 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcC------------Ccc-eeeechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence 345677788899999999999999654 433 5667778899999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+..|.+...++++.+|...|++.....|+.
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 9999999999999999999999999999986
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.041 Score=49.76 Aligned_cols=136 Identities=20% Similarity=0.152 Sum_probs=96.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhc-CCccCCccchHHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDP-------ILVSKLGFIQMQVG-DLEGAKKSFNRVEEMLNE-GKFEDGLLSEVEFRN 256 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~~lg~~~~~~g-~~~~A~~~~~~a~~l~~~-~~~~~~~~~~p~~~~ 256 (370)
+.|+++.|..++.++-...+..++ ..+++.|.-....+ +++.|..+++++.++++. ...+.......+.+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 469999999999999665411222 45588888888899 999999999999999644 211111122234557
Q ss_pred HHHHhHHHHHHHcCCHHH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 257 LVSRNKALIYLVGKDYVS---AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~e---A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.+...++.++...+.++. |....+.+-...|+.+..+...-.++.+.++.+++.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 777888999988877654 44444455455688777775544555568999999999999998754
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00032 Score=41.14 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+++.+|.++...|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666666666666666666666663
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=65.31 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=83.9
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
...+++.+|.+...+.++-.| +. ..+....|.+++++|+.++|..+++..-...++|-.++-.+-.|
T Consensus 20 ld~~qfkkal~~~~kllkk~P------------n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP------------NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC------------Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 456888999999999985433 33 45566699999999999999998888877888899999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 300 LMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|..+|++++|...|++++..+|+ +..++.+-..|.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~----eell~~lFmayv 121 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPS----EELLYHLFMAYV 121 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCc----HHHHHHHHHHHH
Confidence 99999999999999999999998 455555544443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00071 Score=63.50 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhcCCc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNES-IGRGNGL--------DPILVSKLGFIQMQVGDLEGAKKSFNRVEE-MLNEGKF 244 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~-l~~~~~~ 244 (370)
..++..+..++.+|+|..|...+... +...+ . ....++++|.+++++|.+.-+..+|.+|++ .+..-..
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~-g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEA-GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhccccccc-CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677888999999999988765 33333 2 234568999999999999999999999996 2321100
Q ss_pred c-CCc---cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 245 E-DGL---LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 245 ~-~~~---~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
. .+. ....+...++.+|.|..|...|+.-.|.++|.+++.....+|..|..+|.|...
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 000 111122367889999999999999999999999999999999999999987754
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.015 Score=52.43 Aligned_cols=213 Identities=13% Similarity=0.117 Sum_probs=134.7
Q ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHh---------------hHhhHHhHHHHHHHH---HHHHHHHHHHHHhcCCH
Q 017532 129 LPIKLSNRQVGLDRFYELLDFVREKLARKL---------------AEKLEESVKSWKKRE---IFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 129 ~~~~~g~~~~al~~l~~ll~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~ 190 (370)
+....|++.+|-...+.++...+..+-.-+ .......+..|..-+ ..+.-..+-.+.+.|-|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346678888888888888877665542210 011122233333333 45666777888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++|...-++++++++ .+..+...++.++.-.|++.++.++.++-....+.+ .-- .+..|-.-+.+++..+
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--------~ml-asHNyWH~Al~~iE~a 261 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--------WML-ASHNYWHTALFHIEGA 261 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--------hHH-HhhhhHHHHHhhhccc
Confidence 999999999999999 999999999999999999999999988866433221 000 1344566799999999
Q ss_pred CHHHHHHHHHHHHh--hCCCCHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCch
Q 017532 271 DYVSAVREYEECIE--RDYNDIVAIN---NKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHS 345 (370)
Q Consensus 271 ~~~eA~~~~~~~l~--~~p~~~~~~~---nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~ 345 (370)
.|+.|++.|.+-+- +..+|..+.. -+-.+...+..+.+ ++-+..-+. .........+|.++++..+.....+
T Consensus 262 eye~aleIyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~k-ld~la~~l~--d~a~~~~d~~~~itt~~~~~~~~~~ 338 (491)
T KOG2610|consen 262 EYEKALEIYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRK-LDKLADSLT--DKAMWYQDWLFDITTIWALSKVEKT 338 (491)
T ss_pred chhHHHHHHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHH-HHhhhhhhc--chhhhhhhhhhhhhHHhhhhhhhhh
Confidence 99999999988653 3455553322 11111111111111 111111111 1112335678899999988777666
Q ss_pred hhHHHHHHH
Q 017532 346 DIKRTLSSW 354 (370)
Q Consensus 346 ~~~~~ll~~ 354 (370)
.-+-++++.
T Consensus 339 ~l~~~ll~~ 347 (491)
T KOG2610|consen 339 SLAHELLEL 347 (491)
T ss_pred hhHHHHHHH
Confidence 666666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.12 Score=48.15 Aligned_cols=176 Identities=14% Similarity=0.002 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR----GNGLDPILVSKLGFIQMQ---VGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
..+..++-..|....+|+.=+.+++.+-.. .+ ..+......|.++-+ .|+.++|+..+..++.-..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~-~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~------ 213 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVA-NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE------ 213 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchh-cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC------
Confidence 345556667788899999999999988766 23 455666777888888 9999999999999764322
Q ss_pred CccchHHHHHHHHHhHHHHHH----H-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYL----V-----GKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~----~-----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
..+|+ .+...|.+|- . ....++|+.+|+++.+.+|+ ...=.|++.++.-.|...+...-+++..
T Consensus 214 --~~~~d----~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 214 --NPDPD----TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIG 286 (374)
T ss_pred --CCChH----HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHH
Confidence 23444 2333444432 1 33578999999999999965 4444567777777776555544443333
Q ss_pred --------HhC-CCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 318 --------ERV-PTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 318 --------~~~-p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
+.. -+.....|.+-.+..+.-|..+ .++.....+..-+..|..+.+
T Consensus 287 ~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d--~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 287 VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD--YEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcCCcchhH
Confidence 111 1111223444445555544443 566666666654545555443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=50.52 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=84.0
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKK---REIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL 207 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 207 (370)
+..|++.+|...|++++...+...-..++.. ..|.+ ...-.+.+.+.|++..|+|-++++.+..++..+| .
T Consensus 189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-----~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~-~ 262 (329)
T KOG0545|consen 189 FKLGRYKEASSKYREAIICLRNLQLKEKPGE-----PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-G 262 (329)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCCCC-----hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-c
Confidence 6779999999999998866655543322221 12333 2355677999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
+..+++..|......-+.++|..-|.+++++.+
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999996533
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.37 Score=48.74 Aligned_cols=284 Identities=12% Similarity=0.066 Sum_probs=164.5
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHH-HHHH---HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTY-LAYN---TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~-~~~~---~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.+.....+.+...|.+.+++.+... ...+. ..| +.++ +...+..+.+..|...++.+.....
T Consensus 105 ll~~i~~~~~~~~a~~~l~~~I~~~-~~~~~--~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~----------- 170 (608)
T PF10345_consen 105 LLARIYFKTNPKAALKNLDKAIEDS-ETYGH--SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN----------- 170 (608)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH-hccCc--hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-----------
Confidence 3344555555566888887765542 11222 222 2222 2233333789999998888854431
Q ss_pred CCCCCCcc-cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 017532 110 YPNRTGSM-VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 110 ~~~~~~~~-~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 188 (370)
..+.. +-....++.+-+....+.+..+++.+.......... ...... .......|...+ -.-+++..|
T Consensus 171 ---~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~-q~~~~~-~~~qL~~~~lll------~l~~~l~~~ 239 (608)
T PF10345_consen 171 ---QRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL-QLDPSV-HIPQLKALFLLL------DLCCSLQQG 239 (608)
T ss_pred ---hcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc-ccCCCC-CcHHHHHHHHHH------HHHHHHHcC
Confidence 11111 212233444555567788888888777765444433 111111 112334443221 112455667
Q ss_pred CHHHHHHHHHHH---HhCCCCC------------------------C-H-------------HHHHHHHHHHHHcCCHHH
Q 017532 189 EYNVCFDLMNES---IGRGNGL------------------------D-P-------------ILVSKLGFIQMQVGDLEG 227 (370)
Q Consensus 189 ~~~~A~~~~~~~---l~~~~~~------------------------~-~-------------~~~~~lg~~~~~~g~~~~ 227 (370)
+++.+...++++ +...... . + -.+..-|...+..|..++
T Consensus 240 ~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~k 319 (608)
T PF10345_consen 240 DVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDK 319 (608)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchH
Confidence 766666554444 2211100 0 0 122344667788888889
Q ss_pred HHHHHHHHHHHhhcCC-c-c-CCcc----------chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC---CC---
Q 017532 228 AKKSFNRVEEMLNEGK-F-E-DGLL----------SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD---YN--- 288 (370)
Q Consensus 228 A~~~~~~a~~l~~~~~-~-~-~~~~----------~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~---p~--- 288 (370)
|.++++++++...+.. . . .... -...++.......+.+.+..|++.+|....+.+.... |.
T Consensus 320 s~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 399 (608)
T PF10345_consen 320 SEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY 399 (608)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh
Confidence 9999999988765532 0 0 0000 0011234556678999999999999999999887653 22
Q ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 289 ---DIVAINNKALCLMYLRDLSDSIKVLE--------NALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 289 ---~~~~~~nla~~~~~~g~~~~A~~~l~--------~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
.+..++-.|+.+...|+++.|...|. .+....+...+.--+..|+..++.-...
T Consensus 400 ~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 400 ESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 46788899999999999999999997 5556666654555666788888875444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=39.60 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
++..||.+|.++|++++|+++|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999998866543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=38.57 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.+++.+|.++...|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999984
|
... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.054 Score=47.91 Aligned_cols=222 Identities=11% Similarity=0.105 Sum_probs=135.4
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCch---HHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPH---HHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~---~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
-......+++.+++++|+..|.++.+.|...+.. ...+......-.++..|++..-......... +++
T Consensus 6 sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre------~m~--- 76 (421)
T COG5159 6 SLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE------AME--- 76 (421)
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH------HHH---
Confidence 3567788999999999999999998776432221 1112222224557777777655443332210 001
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS 187 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (370)
+.+.+-..-..|.+...++......+.-+......++...+.-. ...+ ...-.-++..+++.
T Consensus 77 ----~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr-----------~fLr---~~Le~Kli~l~y~~ 138 (421)
T COG5159 77 ----DFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR-----------KFLR---LELECKLIYLLYKT 138 (421)
T ss_pred ----HhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH-----------HHHH---HHHHHHHHHHHHhc
Confidence 11111122234555555555445544444444444433322110 1111 12223566789999
Q ss_pred CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 188 KEYNVCFDLMNESIGR----GNG-LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~----~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
|.|.+|+.....++.. +.. .-...+..-..+|.......++...+..|--+...- ++.|..++..-..-
T Consensus 139 ~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~------YCPpqlqa~lDL~s 212 (421)
T COG5159 139 GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSA------YCPPQLQAQLDLLS 212 (421)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhcc------CCCHHHHHHHHHhc
Confidence 9999999987777542 211 122344555788989999999999988776554443 78888878888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 017532 263 ALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
|...+...+|..|..+|-++++-
T Consensus 213 GIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 213 GILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cceeeccccchhHHHHHHHHHhc
Confidence 88889999999999999888775
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.004 Score=55.91 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+-.-|+-|++.++|..|+..|.+.++..+ .+ ..+|.+.+-+.+..|+|-.|+.-..+++.+ +
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------------~ 149 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKC-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------------K 149 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------------C
Confidence 334567888999999999999999999877 54 356788899999999999999999999953 4
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
|.. ..+++--+.|++...++.+|+.+++..+.++-
T Consensus 150 P~h-~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 150 PTH-LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred cch-hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 544 66677788999999999999999998877653
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.007 Score=44.48 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+..+++.++.+|+|..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4677899999999999999999999999999999999999999999875
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.032 Score=48.21 Aligned_cols=166 Identities=10% Similarity=0.042 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH-HH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLDPI-LV--SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~-~~--~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+-..+...-.+..+.++..+++++...+. ...++ +- ...+--.+..-++++|+..|++++.+.... ..
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-------dr 145 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-------DR 145 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-------ch
Confidence 344444455556667777777777766554 01111 11 222223344566777777777777665542 11
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.......+...+.++.+..+|.||-..+.+-... .|..-..+....++++...+|..|..+++..-+. |.+..
T Consensus 146 ~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi-p~f~~ 224 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI-PAFLK 224 (308)
T ss_pred HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC-ccccC
Confidence 1112344444566777777777777666654322 1333345556666677777888888777766554 33422
Q ss_pred --hHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 326 --NETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 326 --~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
....+-||-+.|+ +++-+...+++
T Consensus 225 sed~r~lenLL~ayd---~gD~E~~~kvl 250 (308)
T KOG1585|consen 225 SEDSRSLENLLTAYD---EGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHHHhc---cCCHHHHHHHH
Confidence 2244456666665 44445444444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.016 Score=51.82 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=66.3
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+......++-.++...++++.|+.+.+.++.++|+++.-+.-+|.+|.++|.+..|...++.-++..|+.
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 334456677788999999999999999999999999999999999999999999999999999999999987
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0018 Score=37.47 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+++++|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0016 Score=37.68 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
+++.+|.++...|++++|++.|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56789999999999999999999999999974
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.47 Score=49.15 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..++..+|..-++.|...+|++.|-++ +|+..+.....+..+.|.|++-+.++.-+-+-.+.+ +.+.+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~------~id~e 1171 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP------YIDSE 1171 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc------cchHH
Confidence 456678899999999999999999887 788889888999999999999999988776544433 22222
Q ss_pred HH--------------------HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 254 FR--------------------NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 254 ~~--------------------~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
.. ..-.-..|.-++..|.|+.|.-.|.. ..-|..+|..+.++|+|+.|+..-
T Consensus 1172 Li~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 10 00012256777777788777766643 445677999999999999999988
Q ss_pred HHHH
Q 017532 314 ENAL 317 (370)
Q Consensus 314 ~~al 317 (370)
++|-
T Consensus 1244 RKAn 1247 (1666)
T KOG0985|consen 1244 RKAN 1247 (1666)
T ss_pred hhcc
Confidence 8874
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.23 Score=43.09 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLD-----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+.-.++..+.++|+.+|++++..-..++ ...+...++++.+...+++|-..+.+-..+... ...-+.
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~-------~~~y~~ 188 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK-------CDAYNS 188 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH-------Hhhccc
Confidence 33445556677888888888877655222 245567778888888888888888777643221 000000
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIER----DYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
....++..-.++....+|..|..+|+..-.+ .|++..+.-||- ..+..|+.++....+..
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL-~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL-TAYDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH-HHhccCCHHHHHHHHcC
Confidence 1233444456667778999999999987665 366777777774 45577888887777644
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00044 Score=62.13 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=82.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
-.+..|++++|+++|..++.+ +|.. +..+..++.+++++++...|+..|..+++++|+...-|-.++
T Consensus 123 eAln~G~~~~ai~~~t~ai~l------------np~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg 189 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL------------NPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRG 189 (377)
T ss_pred HHhcCcchhhhhccccccccc------------CCch-hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhh
Confidence 334578899999999999953 4444 778888999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+..-+|++.+|..++..+.+++-+.
T Consensus 190 ~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 190 YAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred HHHHHhhchHHHHHHHHHHHhccccH
Confidence 99999999999999999999997663
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.15 Score=44.79 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=97.3
Q ss_pred HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 74 TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 74 ~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
+-++.++|.|......++++.+-++ ...|...+. ..++.+..|+.+.+-..++..- .....
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~-----------------e~~p~L~s~-Lgr~~MQ~GD~k~a~~yf~~ve-k~~~k 244 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYP-----------------EQEPQLLSG-LGRISMQIGDIKTAEKYFQDVE-KVTQK 244 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCC-----------------cccHHHHHH-HHHHHHhcccHHHHHHHHHHHH-HHHhh
Confidence 4468889999999998988864321 112223232 2344577788777766665543 22222
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017532 154 LARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
+... . ....++-+.+.+++..++|.+|...+.+++..++ .++.+.++.+.+.+..|+..+|++..+
T Consensus 245 L~~~-----q--------~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 245 LDGL-----Q--------GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred hhcc-----c--------hhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 2110 0 0124566788899999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhc
Q 017532 234 RVEEMLNE 241 (370)
Q Consensus 234 ~a~~l~~~ 241 (370)
.+....|.
T Consensus 311 ~~~~~~P~ 318 (366)
T KOG2796|consen 311 AMVQQDPR 318 (366)
T ss_pred HHhccCCc
Confidence 99976655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0018 Score=38.55 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=13.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+.++|.++...|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445666666666666666666643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.021 Score=51.67 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-GKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-~g~~~eA~~~~~~~l~~~p~~ 289 (370)
+|..+.+...+.+..+.|...|.+|.+ .. ... ..+|...|.+-+. .++.+.|.+.|+.+++..|.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~---~~------~~~----~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK---DK------RCT----YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CC------CS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc---CC------CCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 455666777777889999999999972 11 122 4557777888555 667666999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...+.....-+...|+.+.|..+|++++..-|..
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999987754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.048 Score=51.95 Aligned_cols=146 Identities=8% Similarity=0.046 Sum_probs=93.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHh-hHhhHHhHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 017532 135 NRQVGLDRFYELLDFVREKLARKL-AEKLEESVKSWKKRE----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD 208 (370)
Q Consensus 135 ~~~~al~~l~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~ 208 (370)
...++.+.+.+.++..+..+.... .+......+.|..|. ..+...+|.+..+.|+.++|+..++++++..|. +.
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 345666666666555554443321 111122233444442 556678999999999999999999999998873 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH-------------cC---CH
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-------------GK---DY 272 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-------------~g---~~ 272 (370)
..+..+|..+++..+.+.++...+.+-..+ .-|.. +.+.+..+.+..+ .| --
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi-----------~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae 362 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDI-----------SLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAE 362 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----------cCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhH
Confidence 568899999999999999999998886532 01111 2223333443322 11 12
Q ss_pred HHHHHHHHHHHhhCCCCHHH
Q 017532 273 VSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~ 292 (370)
..|++.++++++.||..+..
T Consensus 363 ~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 363 MNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHHHHhCCCCchh
Confidence 34788999999999986644
|
The molecular function of this protein is uncertain. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0051 Score=59.16 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=79.3
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 214 KLGFIQ-MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 214 ~lg~~~-~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
+++-+| .-.|+...|++++..|+.. .|.-......+++.+++..|-.-+|-..+.+++.++...+..
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~------------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~ 678 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNL------------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLT 678 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhcc------------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchH
Confidence 334444 4478999999999999843 333223445678999999999999999999999998888888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
++.+|.+++-+.+.+.|++.|..|+.++|+..
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 89999999999999999999999999998864
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.079 Score=40.51 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=71.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-------CCC
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-------DYN 288 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-------~p~ 288 (370)
|.-.++-|-+++|...+.++..+.+..+. ........+.+..+-.++-.+...|+|++++..-.+++.. +.+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~-eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPA-EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-T-TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCCh-HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 44556778999999999999987655321 0112233333555666788888999999988777777654 344
Q ss_pred CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 289 DI----VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 289 ~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.- .+.+++|+++..+|+.++|+..|+.+-++
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 46679999999999999999999988654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.061 Score=43.68 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
+..+..+-++.++.+++...++-+--+.|. . ....+..|.+++..|+|.+|+..|+.+.+..|..+.
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~------------~-~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPE------------F-PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCC------------c-hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 344455555666666666666554433222 1 333444566666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+--.++.|+..+|+.+= ..+-+++++..++
T Consensus 80 ~kALlA~CL~~~~D~~W-r~~A~evle~~~d 109 (160)
T PF09613_consen 80 AKALLALCLYALGDPSW-RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHhcCCC
Confidence 66666666666665432 2333344444443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.081 Score=45.72 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH-------HHHHHHHHHHHhhC--CC----C
Q 017532 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY-------VSAVREYEECIERD--YN----D 289 (370)
Q Consensus 223 g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~-------~eA~~~~~~~l~~~--p~----~ 289 (370)
-.+++|++.|.-|+-...-. ..++..++..+..+|.+|..+|+. ..|.+.|+++++.. |. .
T Consensus 91 Rt~~~ai~~YkLAll~~~~~------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIK------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 34555555555554332211 123333366666777777777774 44666666666553 22 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..+.+.+|.+..+.|++++|+..|.+++...-.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 478889999999999999999999999986443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0015 Score=58.78 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=79.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
-.+..|.++.|+..|-.++.++| ....++...+.+++.+++...|+.-+..++.+.++. +.-+..+
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-------------a~~ykfr 188 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-------------AKGYKFR 188 (377)
T ss_pred HHhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCccc-------------ccccchh
Confidence 44567999999999999999999 999999999999999999999999999999664442 4445557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
|.....+|+|++|...|+.+.+++-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcccc
Confidence 88888999999999999999988643
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=56.48 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=88.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
...|+...|+.++..++...|......+.+|+.+.++.|-.-+|-..+.+++.+... .| ...+.+|.
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---------ep----l~~~~~g~ 684 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---------EP----LTFLSLGN 684 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---------Cc----hHHHhcch
Confidence 356999999999999999988555567788999999999999999999999977532 33 23566899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
.+....+.+.|++.|++++.++|+++..-+.+-.+.+
T Consensus 685 ~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 685 AYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999999999988887766555
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.11 Score=39.77 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=70.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC---CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN---GL--------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~---~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
+.-.+..|-|++|...+++++.... .. +...+..|+..+..+|+|++++..-++++........ ...
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE--L~q 93 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE--LHQ 93 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH----TTS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc--ccc
Confidence 3445566999999999999976543 01 2345577888999999999999999999877543210 001
Q ss_pred ch-HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 250 SE-VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 250 ~~-p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.. .-+ ..+.+++|..+-..|+.++|+..|+.+-+.
T Consensus 94 deGklW-IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLW-IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 11 123 455678999999999999999999988653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0068 Score=33.95 Aligned_cols=30 Identities=37% Similarity=0.373 Sum_probs=19.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..+|.+++..|++++|+.+|+++++.+|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445666666666666666666666666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.48 Score=44.49 Aligned_cols=126 Identities=13% Similarity=-0.018 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC----C-------c---cCCccchHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG----K-------F---EDGLLSEVE 253 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~----~-------~---~~~~~~~p~ 253 (370)
.|.+.=+. .++.+| .+..++..++.++.++||.+.|.+..++|+-..... . . ..-....++
T Consensus 24 ~Dp~~l~~----ll~~~P-yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e 98 (360)
T PF04910_consen 24 HDPNALIN----LLQKNP-YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE 98 (360)
T ss_pred cCHHHHHH----HHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc
Confidence 45544443 346689 999999999999999999999999999987443310 0 0 001112222
Q ss_pred HH--HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 254 FR--NLVSRNKALIYLVGKDYVSAVREYEECIERDYN-DIVA-INNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 254 ~~--~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-~~~~-~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
++ -.+.......+...|-+..|.++.+-.+.+||. |+.. ...+=....+.++++--+..++....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 21 334445667778899999999999999999998 8854 44444555678999888888887654
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0075 Score=33.76 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.+++++|.++...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999998885
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.49 Score=42.91 Aligned_cols=129 Identities=21% Similarity=0.136 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
++..+|..+|+.+... .++...+.+|.+|.. ..|+.+|..+|.++.+... .+. ......+|
T Consensus 91 ~~~~~A~~~~~~~a~~---g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~----------~~a--~~~~~~l~ 155 (292)
T COG0790 91 RDKTKAADWYRCAAAD---GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN----------VEA--ALAMYRLG 155 (292)
T ss_pred ccHHHHHHHHHHHhhc---ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC----------hhH--HHHHHHHH
Confidence 5688899999965443 557788889999987 4489999999999986311 110 12244566
Q ss_pred HHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 264 LIYLVGK-------DYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 264 ~~~~~~g-------~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
..+..-+ +...|...|.++-... ++.+.+++|.+|.. ..++.+|+..|.++.+... ....++
T Consensus 156 ~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-----~~a~~~ 228 (292)
T COG0790 156 LAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-----GAACYN 228 (292)
T ss_pred HHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-----HHHHHH
Confidence 6655531 3347899999988775 78888899988865 3478999999999988865 456777
Q ss_pred HHHHHH
Q 017532 333 LCSMYE 338 (370)
Q Consensus 333 l~~lye 338 (370)
++.+|.
T Consensus 229 ~~~~~~ 234 (292)
T COG0790 229 LGLMYL 234 (292)
T ss_pred HHHHHh
Confidence 775553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.2 Score=45.72 Aligned_cols=289 Identities=16% Similarity=0.077 Sum_probs=151.1
Q ss_pred HhHHHHHHcCChHHHHHHHHHh----hhcc--------ccCCchHHHH----HHHHHHHHHhhhcCHHHHHHHhhhcCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRA----RSQS--------LLTQPHHHLT----YLAYNTLALMKLRRFDEAQQELDSLEDF 96 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~----~~~~--------~~~~P~~~~~----~~~~~~~al~~l~~~~~A~~~~~~~~~l 96 (370)
..+...+..|++.-|..+.++. +..+ ...-|.+.+. .....+|.+....++.+|...+.++...
T Consensus 365 eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~ 444 (894)
T COG2909 365 EAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF 444 (894)
T ss_pred HHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4677778888888888777663 1100 0122332111 1233588989999999999988887432
Q ss_pred C-CCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHH
Q 017532 97 N-SSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIF 175 (370)
Q Consensus 97 ~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (370)
- .+... ..+. .--.+..+.+.+....|+++.+++.....+....... |..+ ..
T Consensus 445 l~~~~~~----------~~~~-l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--------------~~~r-~~ 498 (894)
T COG2909 445 LKAPMHS----------RQGD-LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--------------YRSR-IV 498 (894)
T ss_pred hCcCccc----------chhh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--------------chhh-hh
Confidence 1 11110 0001 1113345566666788888888877766654433221 1111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhcCCccCCc
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDP--ILVSKLGFIQMQVGD--LEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~--~~~~~lg~~~~~~g~--~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
++..++.+..-.|++++|..+.+++.+.... ... .+....+.++..+|+ +.+....|.......-... .
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~----~ 574 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK----P 574 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc----c
Confidence 4456777777789999988888888665321 122 233555777888883 3333444444322110000 0
Q ss_pred cchHHHHHHHHHhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC
Q 017532 249 LSEVEFRNLVSRNKALIY-LVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENALERV--PT 322 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~-~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~~--p~ 322 (370)
-..+-. .+......++ ...+...+|...++-.....|... .+++++|.+....|++++|...+....... +.
T Consensus 575 ~~~f~~--~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 575 RHEFLV--RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cchhHH--HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 001111 1111111111 244555666666666655544432 223467777777788888777777765542 21
Q ss_pred c-chhHHHHHHHHHHHHhccCCchhhHHHHHHH
Q 017532 323 V-ALNETLVVNLCSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 323 ~-~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~ 354 (370)
+ ............+|.+...+. +....++..
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~-~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDK-ELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCH-HHHHHHHHh
Confidence 1 122444555555666554443 444444443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.049 Score=41.18 Aligned_cols=105 Identities=11% Similarity=0.162 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
+..++..|++-+|+++.++++.... .+...+ .++..+|++ +++.+.. ..+|+.+ .
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~-~~~~~~----~lh~~QG~i-----f~~lA~~-----------ten~d~k--~-- 57 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHG-EDESSW----LLHRLQGTI-----FYKLAKK-----------TENPDVK--F-- 57 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHcc-CCCchH----HHHHHHhHH-----HHHHHHh-----------ccCchHH--H--
Confidence 4567788999999999999998887 544332 223334442 2333332 2345441 1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.|+ -.|+++|.++..+.|..+..++.+|.-+--..-|++++.-.++++..
T Consensus 58 ----~yL-----l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 58 ----RYL-----LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ----HHH-----HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 111 24678899999999998888888877665556677777777776654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.8 Score=44.41 Aligned_cols=170 Identities=14% Similarity=0.012 Sum_probs=111.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..+.+....|+.+.|+.+.+.++..-| ......+..+|.+..-.|++++|..+..++.++...- ..+-+
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------~~~~l 535 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-------DVYHL 535 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------ccHHH
Confidence 455677778999999999999998777 2234667889999999999999999999999887662 33333
Q ss_pred HHHHHHhHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCcc
Q 017532 255 RNLVSRNKALIYLVGK--DYVSAVREYEECIER----DYNDIVAINNKALCLMYLRDLSDSIKVLENALER----VPTVA 324 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g--~~~eA~~~~~~~l~~----~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~----~p~~~ 324 (370)
...+....+.++..+| .+.+....|...-+. .|-..-....++.++...-+++.+..-..+.++. .|.+.
T Consensus 536 ~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~ 615 (894)
T COG2909 536 ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPL 615 (894)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchh
Confidence 4667777899999999 444555555544332 2333323333333332222366666666665554 34443
Q ss_pred hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 325 LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 325 ~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
....+.+.|+.++-+.. +-++....+..+..
T Consensus 616 ~~~~~~~~LA~l~~~~G--dl~~A~~~l~~~~~ 646 (894)
T COG2909 616 LSRLALSMLAELEFLRG--DLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 43444468888887544 46666666666643
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.57 Score=38.57 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=91.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-HHHHHHh
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDP-ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF-RNLVSRN 261 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~-~~~~~~~ 261 (370)
+.+.+..++|+.-|..+-+.+-...+ -+....|.+..+.|+...|+..|..+-.-. .-|.. +..+..-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt----------~~P~~~rd~ARlr 137 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT----------SIPQIGRDLARLR 137 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC----------CCcchhhHHHHHH
Confidence 44558888999998888776652333 345677889999999999999999986321 12222 2344455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 262 KALIYLVGKDYVSAVREYEECI-ERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l-~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
-+.+++..|-|++-....+..- +.+|--..+.--||.+..+.|++.+|.+.|..+..-
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6788899999998766665543 234555567778899999999999999999988763
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.027 Score=53.14 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=101.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
...||.-.|-+-+..+++..| .++......+.+...+|+|+.|...+.-+..+.... +. ..-.+-.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~--------~~-----~~~~~~r 365 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQ-QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT--------DS-----TLRCRLR 365 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC--------ch-----HHHHHHH
Confidence 345999999999999999999 999999999999999999999988877666543331 11 1112344
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+..|++++|...-+-++...-.++.+...-|.....+|-+|++.-++.+.+.++|..
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 56789999999999888887777788887777888888999999999999999998853
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.33 Score=48.41 Aligned_cols=145 Identities=21% Similarity=0.210 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHh
Q 017532 174 IFVLNCLIGYHLS-----SKEYNVCFDLMNESIGR----GNGLDPILVSKLGFIQMQVG-----DLEGAKKSFNRVEEML 239 (370)
Q Consensus 174 ~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~----~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a~~l~ 239 (370)
......+|.++.. .+|.+.|+.+++.+.+. .....+.+.+.+|.+|.+.. +.+.|..+|.++.++
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~- 322 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL- 322 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-
Confidence 3444555555553 36899999999999771 11134567888999999854 678899999999853
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGK---DYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKV 312 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g---~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~ 312 (370)
.. ..+.+.+|.++..-. ++..|.++|..+... .+..+.+++|+|+.. ..+...|..+
T Consensus 323 ----------g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 323 ----------GN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred ----------CC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 22 234566888887765 578999999998765 467888899988864 3579999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 313 LENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 313 l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
+.++.+.++ ....+.+..+|+..
T Consensus 387 ~k~aA~~g~-----~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 387 YKKAAEKGN-----PSAAYLLGAFYEYG 409 (552)
T ss_pred HHHHHHccC-----hhhHHHHHHHHHHc
Confidence 999999884 34455666666644
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.088 Score=47.11 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 173 EIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
+.+.+.++-.+|.+.++++.|+.+.+.++...| +++.-+.-.|.+|.++|.+..|..-++..++.+|+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 357778888999999999999999999999999 99999999999999999999999999999988776
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.19 Score=42.09 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER--DY 287 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p 287 (370)
.++..+|.-|.+.||+++|.+.|.++..- ...+..+.+.+++.-.+.+..|++.....+..++-.. .+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~----------~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY----------CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 56788999999999999999999998753 2344445777888889999999999999999998655 24
Q ss_pred CCHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 288 NDIVAIN----NKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 288 ~~~~~~~----nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.++...+ -.|..++..++|.+|-+.|-.+..-..
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 4454333 357788889999999999988765543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.93 Score=41.07 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLS----SKEYNVCFDLMNESIGRGNGLD-PILVSKLGFIQMQVG-------DLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~a~~l~~~ 241 (370)
....+.+|..+.. ..|+.+|..+|+++...+. .. ..+.+.+|..|..-+ +...|...|.++...
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~-~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--- 184 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN-VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--- 184 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh---
Confidence 3466778888776 4599999999999998866 33 344788888887642 333788888888753
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-------------
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR------------- 304 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g------------- 304 (370)
.+ ..+...+|.+|.. ..++.+|+.+|.++.+... ....++++ ++...|
T Consensus 185 --------~~----~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 185 --------GN----PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred --------cC----HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 12 3345667877755 4489999999999999876 88888898 777666
Q ss_pred --CHHHHHHHHHHHHHhCC
Q 017532 305 --DLSDSIKVLENALERVP 321 (370)
Q Consensus 305 --~~~~A~~~l~~al~~~p 321 (370)
+...|...+..+....+
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55555555555555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.3 Score=48.69 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
+-..|..+++.+... .+..+...+|.++..- .|++.|+.+|+.+.+-..... .... ..+...+|
T Consensus 227 ~~~~a~~~~~~~a~~---g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----~~~~----~~a~~~lg 295 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL---GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----TKGL----PPAQYGLG 295 (552)
T ss_pred hhhHHHHHHHHHHhh---cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----hhcC----CccccHHH
Confidence 356788888888765 4577788888888764 689999999999975100000 0001 22345578
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 264 LIYLVGK-----DYVSAVREYEECIERDYNDIVAINNKALCLMYLR---DLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 264 ~~~~~~g-----~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.+|.... ++..|+.+|.++.+.+ ++.+.+++|.++..-. ++..|.++|..|....- ....++++.
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-----~~A~~~la~ 368 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-----ILAIYRLAL 368 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-----hHHHHHHHH
Confidence 8888743 7888999999998874 4567788999998765 57899999999987654 578899999
Q ss_pred HHHhc--cCCchhhHHHHHHHHhhh
Q 017532 336 MYELA--YVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 336 lyel~--~~~~~~~~~~ll~~~~~~ 358 (370)
+|+.. ...+.+....+..+++..
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 99976 223345566665555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.36 Score=47.12 Aligned_cols=181 Identities=15% Similarity=0.206 Sum_probs=114.1
Q ss_pred CCcCCChHhHHHHH-HcCChHHHHHHHHHhhhccccCCchHHHHHHHHH--HHHHhhh----cCHHHHHHHhhhcCCCCC
Q 017532 26 NDLVPDLASLQDLA-TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYN--TLALMKL----RRFDEAQQELDSLEDFNS 98 (370)
Q Consensus 26 ~~~~~~~~~l~~l~-~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~--~~al~~l----~~~~~A~~~~~~~~~l~~ 98 (370)
.-||+....+-..+ =.|+=+.+++++.++....-...|--.+.-+++- +..++.. ...+.|...+..+...
T Consensus 185 SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 185 SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--
Confidence 55565554444443 3577777777777764433222232112212211 2223332 3455566666555221
Q ss_pred CCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 99 SGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
||+ + ..+....+++....|+.++|++.+...+... ..|++-..-.++
T Consensus 263 -----------yP~---s---~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q----------------~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 263 -----------YPN---S---ALFLFFEGRLERLKGNLEEAIESFERAIESQ----------------SEWKQLHHLCYF 309 (468)
T ss_pred -----------CCC---c---HHHHHHHHHHHHHhcCHHHHHHHHHHhccch----------------hhHHhHHHHHHH
Confidence 221 1 1334556777778899999999888755211 123333345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHhhc
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL-------EGAKKSFNRVEEMLNE 241 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~a~~l~~~ 241 (370)
.++-++.-+.+|++|...+.++.+.+.+......+..|.++...|+. ++|.+.|.++-.+...
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999988765666668889999999999 8888888888766553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.029 Score=50.03 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=63.7
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
.+.+.-..+.|+.++|...|+.++++.|.++.++..+|......++.-+|-.+|-+|+..+|.+ +.++.|-+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n---seALvnR~ 191 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN---SEALVNRA 191 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc---hHHHhhhh
Confidence 3455566789999999999999999999999999999999999999999999999999999987 66666544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.042 Score=35.80 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++.+|+++.++|++++|..+++.+++..|++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4455666666666666666666666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.47 Score=42.88 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=86.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhh----CC------
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIER----DY------ 287 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~----~p------ 287 (370)
.+..||++.|..+|.++..+.... ++......+...++.|......+ ++++|+.+++++.++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~-----~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL-----DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC-----CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 467899999999999998765321 12222334788899999999999 999999999999887 21
Q ss_pred C----CHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 288 N----DIVAINNKALCLMYLRDLS---DSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 288 ~----~~~~~~nla~~~~~~g~~~---~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
+ ...++..++.++...+..+ +|..+++.+....|+.. ...+..+.-+-- ..+..+....+.+.|...+
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~--~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLK--SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhc--cCChhHHHHHHHHHHHhcc
Confidence 1 1246678889998877754 45556656656667631 222233333322 2333455555555555544
|
It is also involved in sporulation []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.056 Score=35.22 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=33.4
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
.++.+|..+++.|+|++|..+.+.+++.+|+|..+..-...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 35678999999999999999999999999999987665443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.03 Score=34.08 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
.++.++|.+|..+|++++|+.++++++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 46788899999999999999999998876554
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.15 Score=47.50 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=73.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC-ccchH----HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG-LLSEV----EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~-~~~~p----~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
|..++++|+|..|.--|..+++++.+...... .+..+ ...+.+-..+..||..+++.+-|+.+-.+.|-++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 44556677777777777777777765432000 01111 11234445588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
.-+...|.|...+.+|.+|-..+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998766554
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.6 Score=39.82 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=126.9
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhc--cccCCchHH---HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccccc
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQ--SLLTQPHHH---LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETY 106 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~--~~~~~P~~~---~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~ 106 (370)
....+.+....+++++++.+.++... +....+... .....-..-.|.+.|++++-...+.... .|+...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R------pf~~~v 81 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR------PFLSSV 81 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH------HHHHHh
Confidence 45667778888889999998887542 211222110 1112222456788888888776665541 011100
Q ss_pred CCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 017532 107 PHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLS 186 (370)
Q Consensus 107 ~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (370)
+..-..-..|.+.-.++.-.+....-++...+.+++..+.- -+..+. ..-..++..|+.
T Consensus 82 -------~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek-----------RtFLRq---~Learli~Ly~d 140 (411)
T KOG1463|consen 82 -------SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK-----------RTFLRQ---SLEARLIRLYND 140 (411)
T ss_pred -------hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh-----------HHHHHH---HHHHHHHHHHHh
Confidence 00001111232222222222223333333333222222110 111111 222356778889
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 187 SKEYNVCFDLMNESIGRGN-GLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~-~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
.++|.+|+.....+++.-. -+| ......-..+|....++.+|...+..|--..... ++.|..++..-+.
T Consensus 141 ~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai------YcpPqlQa~lDLq 214 (411)
T KOG1463|consen 141 TKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI------YCPPQLQATLDLQ 214 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc------ccCHHHHHHHHHh
Confidence 9999999998877764322 011 2334455778888999999999998876544332 7888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
-|.++....+|..|..+|=++.+-
T Consensus 215 SGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 215 SGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ccceeecccccchHHHHHHHHHcc
Confidence 899999999999999999888765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.19 Score=40.82 Aligned_cols=118 Identities=19% Similarity=0.052 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
+..+..+-+..++.+++..++..+--..| ..+..-..-|.+++..|++++|+..|+.+..-. ...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~---------~~~p---- 78 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEERA---------PGFP---- 78 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---------CCCh----
Confidence 34455566677899999999999999999 889888889999999999999999999987321 2233
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~ 311 (370)
...-.++.|++.+|+.+= ..+-.++++.++ ++.+.. +...+........|..
T Consensus 79 ~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 79 YAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHH-HHHHHHHhccccchhh
Confidence 233448889988888542 222233444443 444433 3334444444444444
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.14 Score=37.89 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC----C-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDY----N-----DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p----~-----~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.....|+|.+|++.+.+..+... . ...+..++|.+....|++++|+..+++++++-........+.+-+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 34688999999999988876631 1 13577889999999999999999999999885543222444444444
Q ss_pred HHHh
Q 017532 336 MYEL 339 (370)
Q Consensus 336 lyel 339 (370)
++.+
T Consensus 87 ~~~l 90 (94)
T PF12862_consen 87 LANL 90 (94)
T ss_pred HHHH
Confidence 4443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.11 Score=44.81 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=67.2
Q ss_pred hcCCHHHHHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRG-----N-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~-----~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
....+++|+..|.-++-.. + ..-+.++..+|++|...|+.+....++++|+............+..+-....+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 3456667776666554321 1 112345678899999999976666666666554332111000011111114566
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYND-IVAINNKA 297 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-~~~~~nla 297 (370)
+.+|.+..+.|++++|+.+|.+++...-.. ...+.++|
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 789999999999999999999999764222 23444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.97 Score=45.05 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=43.5
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
....|+..=-.+.|++.. +.+|+. -.|-.+.-.++.++ .++-|+..|-+.++-....+.- +
T Consensus 669 D~~~Lve~vgledA~qfi--------EdnPHp-rLWrllAe~Al~Kl-~l~tAE~AFVrc~dY~Gik~vk---------r 729 (1189)
T KOG2041|consen 669 DVMNLVEAVGLEDAIQFI--------EDNPHP-RLWRLLAEYALFKL-ALDTAEHAFVRCGDYAGIKLVK---------R 729 (1189)
T ss_pred hHHHHHHHhchHHHHHHH--------hcCCch-HHHHHHHHHHHHHH-hhhhHhhhhhhhccccchhHHH---------H
Confidence 444555555556666543 347872 22322222456665 5566666666664332111110 0
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYEL 146 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~l 146 (370)
-+.+ .+-..-.|++..+.|++++|...+-++
T Consensus 730 l~~i--~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 730 LRTI--HSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred hhhh--hhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 0000 011112355556678888887766543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.1 Score=37.07 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=91.3
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD-- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-- 208 (370)
...|.+++|+..|..+.... -+..+ .-+....+.+..++|+-..|+..|.++-.-.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg--------~g~Yp----------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTG--------YGSYP----------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred HHcCCchHHHHHHHHHHhcC--------CCcch----------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 45677888877776653210 00000 12233566778889999999999999876555211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 209 -PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 209 -~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
..+...-+.++...|-|++-..-.+..- . ..+|- +..+.-.+|+..++.|++.+|.++|.++.. |.
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa---~--------d~n~m-R~sArEALglAa~kagd~a~A~~~F~qia~-Da 197 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLA---G--------DGNPM-RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DA 197 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhcc---C--------CCChh-HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cc
Confidence 2334555777888999887555444332 1 12232 255666789999999999999999999877 55
Q ss_pred CCHHHHHHHHHHHHH
Q 017532 288 NDIVAINNKALCLMY 302 (370)
Q Consensus 288 ~~~~~~~nla~~~~~ 302 (370)
..+....+++.+.+.
T Consensus 198 ~aprnirqRAq~mld 212 (221)
T COG4649 198 QAPRNIRQRAQIMLD 212 (221)
T ss_pred cCcHHHHHHHHHHHH
Confidence 556666666665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.8 Score=43.48 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
..++..++.-+-..|++++|-++|-+++.++.-+.
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 34566688888899999999999999999975443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.034 Score=33.79 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+++|+|.++...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888877765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.025 Score=48.38 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=55.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.....++.+.|.+.|.+++++-|.....|+.+|....+.|+++.|.+.|++.++++|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45678999999999999999999999999999999999999999999999999999975
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.46 Score=42.50 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-H
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-V 291 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-~ 291 (370)
..-+.-....|++.+|...|..++...++ . ..+...++.|+...|+.++|...+...-.....+. .
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~------------~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~ 204 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPE------------N-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH 204 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcc------------c-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence 33466677899999999999999975444 2 56677899999999999999888776422222111 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
........+.......+ +..+++.+..+|++ ....+.|+..|-+..+.. ++...|+..+.+
T Consensus 205 ~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd---~~aa~~lA~~~~~~g~~e-~Ale~Ll~~l~~ 265 (304)
T COG3118 205 GLQAQIELLEQAAATPE-IQDLQRRLAADPDD---VEAALALADQLHLVGRNE-AALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh
Confidence 21112233444444444 34566777889987 788888888887655522 333444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.41 E-value=3.5 Score=41.78 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=110.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCC-CCH---
Q 017532 135 NRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL-SSKEYNVCFDLMNESIGRGNG-LDP--- 209 (370)
Q Consensus 135 ~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~-~~~--- 209 (370)
..++.+..|+.++...-..+..-.. ..++.....+.+++.+|.+++ ...+++.|..++++++..... .-.
T Consensus 25 ~~~~~l~~Y~kLI~~ai~CL~~~~~-----~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 25 KSEEQLKQYYKLIATAIKCLEAVLK-----QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4456666777776553333321110 111222233578889999988 889999999999999877642 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 017532 210 -ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-- 286 (370)
Q Consensus 210 -~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-- 286 (370)
...+.+++++.+.+... |...+++.++..... ....+.-...+.....++..+++..|++.++......
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~-------~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY-------GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc-------CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 23467899999998877 999999999766552 1222211112222334434489999999999998764
Q ss_pred CCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 287 YNDIVAI----NNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 287 p~~~~~~----~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+.++.+. ...+.+..+.+..+++++.+++++.
T Consensus 172 ~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 172 RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 4555432 3346677788888999999988844
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.31 Score=39.03 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
-|.+++..|+|++|+..|+.+.+..+..+..--.++.|+.-+|+.
T Consensus 50 dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 50 DGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 455555555555555555555444444444444445555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.4 Score=47.96 Aligned_cols=117 Identities=15% Similarity=0.000 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
-.++..|...|+|+.|.++|-++-. ...-..+|-+.|+++.|.+.-++.. .|+....
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~--------------~~e~t~~ 825 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECH--------------GPEATIS 825 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhc--------------CchhHHH
Confidence 3556667777888888777765511 1112345666777777766555443 2222234
Q ss_pred HHHhHHHHHHHcCCHHHHHHH-------------HHHH------Hhh----CCCCH-HHHHHHHHHHHHhCCHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVRE-------------YEEC------IER----DYNDI-VAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~-------------~~~~------l~~----~p~~~-~~~~nla~~~~~~g~~~~A~~~l 313 (370)
.++..+.-+-+.|+|.||... |.+. +.+ +|+.. .+.-.+|.-+...|++.+|...|
T Consensus 826 ~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 455556556666666655444 4331 111 22222 45567788888889999888877
Q ss_pred HHHH
Q 017532 314 ENAL 317 (370)
Q Consensus 314 ~~al 317 (370)
-++-
T Consensus 906 lea~ 909 (1636)
T KOG3616|consen 906 LEAG 909 (1636)
T ss_pred Hhhh
Confidence 6653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.1 Score=40.67 Aligned_cols=148 Identities=13% Similarity=0.039 Sum_probs=90.7
Q ss_pred HHhHHHHHHHH---------HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH--HH
Q 017532 163 EESVKSWKKRE---------IFVLNCLIGYHLSSKE-YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGA--KK 230 (370)
Q Consensus 163 ~~~~~~~~~~~---------~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A--~~ 230 (370)
..-..+|.... +.-+..-|.-+.+.|. -++|+++++.+++-.+ .|....+..-..-- ..|..| ..
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvK--q~Y~qaLs~~ 435 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVK--QAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH--HHHHHHHhhh
Confidence 44566776543 2233344566667777 7889999999999888 66544332111110 011111 11
Q ss_pred HHHHHHHHhh---cCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH
Q 017532 231 SFNRVEEMLN---EGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS 307 (370)
Q Consensus 231 ~~~~a~~l~~---~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~ 307 (370)
.+-+.+.+.. +..-....-.+.+ ......-|.-++.+|+|.++..+-.-..++.| .+.++..+|.|++...+|+
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~e--ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEE--IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHH
Confidence 2222222211 1000000011111 11223457788999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHH
Q 017532 308 DSIKVLENA 316 (370)
Q Consensus 308 ~A~~~l~~a 316 (370)
+|-.++...
T Consensus 513 eA~~~l~~L 521 (549)
T PF07079_consen 513 EAWEYLQKL 521 (549)
T ss_pred HHHHHHHhC
Confidence 999999764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.16 Score=37.64 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=48.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc-hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS-EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
..++.||+.+|++.+.+.......... .. .... ..+..++|.++...|++++|+..+++++.+-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~----~~~~~~~-~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNN----SSSNSGL-AYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhccc----chhhHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999998888876554311 11 1123 5678889999999999999999999999773
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.55 Score=42.06 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 172 REIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
....++..+++.+...|+++.++..+++.+..+| .+...+..+-..|.+.|+...|+..|+++.++.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3467888999999999999999999999999999 999999999999999999999999999998753
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.79 E-value=4.5 Score=39.74 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=91.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
..-...|+++...-.|++.+-.-. .....|..-++.....|+.+-|...+.++.++... ..|. ++..
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k--------~~~~----i~L~ 371 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVK--------KTPI----IHLL 371 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC--------CCcH----HHHH
Confidence 344456777777777777755433 44566666666666667777777777776655332 1232 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI---KVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~---~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
-+..--..|+++.|..+|++..+.-|....+-...+....+.|..+.+. +.+.....-.-++.+.+...++.+.+.-
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4555556677777777777777666777766666666777777777777 3333333332333445666666666666
Q ss_pred hccCCc
Q 017532 339 LAYVNH 344 (370)
Q Consensus 339 l~~~~~ 344 (370)
++.+..
T Consensus 452 ~i~~d~ 457 (577)
T KOG1258|consen 452 KIREDA 457 (577)
T ss_pred HHhcCH
Confidence 555544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.12 Score=46.21 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
-...+.-..+.|+-++|..+|+.++...| .++.++...|......+++-+|-.+|-+|+.+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP-~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAP-TNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCC-CCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34555566677888888888888888888 88888888888888778888888888888844
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.93 Score=42.56 Aligned_cols=138 Identities=14% Similarity=-0.021 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CC-----------CCCH---HHHHHHHHHHHHcCCH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR--------------GN-----------GLDP---ILVSKLGFIQMQVGDL 225 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------------~~-----------~~~~---~~~~~lg~~~~~~g~~ 225 (370)
..++..++.++..+|+++.|..++++++-. +. ..+- .++........+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 467778899999999999999988888521 11 0111 3345556777889999
Q ss_pred HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q 017532 226 EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-----DIVAINNKALCL 300 (370)
Q Consensus 226 ~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-----~~~~~~nla~~~ 300 (370)
..|.++.+-.+.+.+.. || ..+...+-....+.++|+-=+..++........ -|..-+..|.++
T Consensus 120 rTAlE~~KlLlsLdp~~--------DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDE--------DP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHHHHHHhcCCCC--------Cc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 99999999999887652 55 334555667777889998888877776553221 235667889999
Q ss_pred HHhCCH---------------HHHHHHHHHHHHhCCC
Q 017532 301 MYLRDL---------------SDSIKVLENALERVPT 322 (370)
Q Consensus 301 ~~~g~~---------------~~A~~~l~~al~~~p~ 322 (370)
...++- ++|.+.+.+|+...|.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 999998 8999999999998875
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.76 Score=48.89 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHH------HHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 180 LIGYHLSSKEYNVCFD------LMNESI-GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 180 la~~~~~~g~~~~A~~------~~~~~l-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.+..-...|.+.+|.+ ++.... ...| .....+..+++++.+.|+.++|+..-.++.-+...... ...|
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~-~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g----~ds~ 1012 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHP-EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG----KDSP 1012 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcch-hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc----CCCH
Confidence 3344445566776666 555333 3344 56677889999999999999999998887654433211 3455
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
+. ...+.+++...+..++...|...+.++..+ .|......+|++.++...++++.|+++++.|....-
T Consensus 1013 ~t-~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1013 NT-KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred HH-HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 55 788899999999999999999999998876 366667788999999999999999999999998643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.082 Score=30.89 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
+.|..+|+.+..++++.|++++|++.|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356788888999999999999999988764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.53 Score=37.70 Aligned_cols=80 Identities=13% Similarity=-0.016 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
+...-+..++.+++..++..+--..| ..+..-..-|.+++..|++++|+..|.+..+-. ...| ...
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~---------~~~p----~~k 81 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSSA---------GAPP----YGK 81 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhccC---------CCch----HHH
Confidence 33444457999999999999999999 888888888999999999999999999987311 1223 223
Q ss_pred HhHHHHHHHcCCHH
Q 017532 260 RNKALIYLVGKDYV 273 (370)
Q Consensus 260 ~~~g~~~~~~g~~~ 273 (370)
-.++.|++.+|+.+
T Consensus 82 AL~A~CL~al~Dp~ 95 (153)
T TIGR02561 82 ALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHhcCChH
Confidence 34788888888743
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.5 Score=41.44 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEE-CIERDYNDIVAINNK------ALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~-~l~~~p~~~~~~~nl------a~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...++|..+...|....+...+.+ +....|++......+ +..+..+|+..++...++++....|++
T Consensus 103 ~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 103 AVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 334444444444444443333333 334444444333333 444444444444444444444444443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.49 Score=33.41 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=51.4
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV---AINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~---~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+.-.+..|.-++.+.+.++|+..++++++..++.+. ++-.+..+++..|++.+++++--+-+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888899999999999999999998776654 5556667899999999999887665544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.082 Score=45.34 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 217 FIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
....+.||.+.|.+.|.+++.+ -|++ ..-|+-+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~l------------ap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL------------APEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc------------Cchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999954 5566 77889999999999999999999999999999875
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.33 E-value=4.4 Score=37.55 Aligned_cols=120 Identities=15% Similarity=0.045 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.....+...+.+..+.|.++-|...+.++........ ...| .+.+..+.++...|+..+|+..++..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~-----~~~~----~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE-----SLLP----RVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc-----CCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5567788999999999999999999999886432210 1133 345678999999999999999999988821
Q ss_pred -C-C--------------------------------CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCcchh
Q 017532 287 -Y-N--------------------------------DIVAINNKALCLMYL------RDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 287 -p-~--------------------------------~~~~~~nla~~~~~~------g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
. . ...++..+|...... +..+++++.|.++++.+|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--- 291 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW--- 291 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH---
Confidence 1 0 013445556555556 88999999999999999986
Q ss_pred HHHHHHHHHHHH
Q 017532 327 ETLVVNLCSMYE 338 (370)
Q Consensus 327 ~~~~~nl~~lye 338 (370)
...++.++..+.
T Consensus 292 ~k~~~~~a~~~~ 303 (352)
T PF02259_consen 292 EKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHH
Confidence 566666665554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.24 Score=31.63 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQ 219 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~ 219 (370)
.+++.+...+++.|++++|.++|+++.+.+-..+..++..+-..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 356788889999999999999999999887667777777665544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.5 Score=45.60 Aligned_cols=74 Identities=18% Similarity=0.089 Sum_probs=54.1
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.+|..+|......|...+|++.|-++ +|+..|.....+..+.|++++-+.++.-+-+....+.+...++|-++.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 45777788888888888888888775 777778888888888888888888887776665555454555555443
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.75 Score=45.32 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=70.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
-|.-.++..+|..++++|...++--+.+ ..+..+ +....+++.||....+.+.|.+.++++-+.+|.++-.-.
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D------~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISD------NYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccch------hhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3666677888888888888887654432 234445 666677888888888888888888888888888876665
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 295 NKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
-.-.+....|.-.+|+....+....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 5556666677777777777665543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.77 Score=33.64 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
.+..+++.++.+| ++..+.+.+|..+...|++++|++.+-.+++..
T Consensus 7 ~~~al~~~~a~~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 7 DIAALEAALAANP-DDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3566788888999 999999999999999999999999999888543
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.71 Score=40.89 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+.......++=..+...++++.|...-++.+.++|.++.-+.-.|.+|.+.|-+.-|++.++..++..|+.
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3333355566677788899999999999999999999999999999999999999999999999999999987
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.86 Score=35.85 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=59.2
Q ss_pred HHHHHhHHHHHHHcCC---HHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 256 NLVSRNKALIYLVGKD---YVSAVREYEECIE-RDYND-IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~---~~eA~~~~~~~l~-~~p~~-~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
....++++.++....+ ..+.+.+++..++ -+|.. ....+.+|+.+++.|+|++++.+++..++..|++ .++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n---~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN---RQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc---HHHH
Confidence 3455667777776554 5568999999997 44543 3677889999999999999999999999999987 5444
Q ss_pred HHHHHHH
Q 017532 331 VNLCSMY 337 (370)
Q Consensus 331 ~nl~~ly 337 (370)
---.+++
T Consensus 109 ~Lk~~ie 115 (149)
T KOG3364|consen 109 ELKETIE 115 (149)
T ss_pred HHHHHHH
Confidence 4333443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.32 Score=31.02 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|..+|+.+-..+.+.|++++|.+.|+++.+..-.+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P 36 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKP 36 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 34566666666667777777777777666654433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.72 Score=44.51 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=57.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
.++.|+.+.|.++.++. +++..|..||...+..|+++-|+++|+++-. . -.+.
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------------~-------~~L~ 380 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------------F-------SGLL 380 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------------H-------HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------------c-------cccH
Confidence 34457777776654432 5677788888888888888888888877742 1 1256
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
++|...|+-+.=.+.-+.+....- ++-.-.+++.+|+.++.++.+.+.
T Consensus 381 lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 381 LLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 667777775443333333222211 122235666777887777777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.6 Score=40.05 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV------SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
++..-|-++.+.+++++|..+|.++..... +.+..+ ..+-+.| -+++++.-........+..+..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~s------- 78 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGKS------- 78 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCCc-------
Confidence 445567788899999999999999987665 443332 2222333 3566666655555555433321
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----CCC-----------CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER----DYN-----------DIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----~p~-----------~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
.....-.|...+++|+|.+|+..+..--+. .|. +...-+..|.|+..+|++.+++..++
T Consensus 79 ------~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 79 ------AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred ------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 334455899999999999999887665443 111 11223457889999999999999999
Q ss_pred HHHHh
Q 017532 315 NALER 319 (370)
Q Consensus 315 ~al~~ 319 (370)
+.+..
T Consensus 153 ~i~~~ 157 (549)
T PF07079_consen 153 RIIER 157 (549)
T ss_pred HHHHH
Confidence 98865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=93.36 E-value=3.4 Score=36.54 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHH
Q 017532 226 EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY------NDIVAINNKALC 299 (370)
Q Consensus 226 ~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p------~~~~~~~nla~~ 299 (370)
...++.+++|....... ...-....+...+|..|+..|++++|++.|+.+....- -...+...+..|
T Consensus 155 ~~iI~lL~~A~~~f~~~-------~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKY-------GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC 227 (247)
T ss_pred HHHHHHHHHHHHHHHHh-------ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 35566777776655442 11222356667899999999999999999999965522 122456678889
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 017532 300 LMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al 317 (370)
+...|+.++.+.+.-+++
T Consensus 228 a~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 228 AKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 999999998888776554
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.14 Score=27.81 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777766654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.00 E-value=3.4 Score=36.63 Aligned_cols=215 Identities=13% Similarity=0.156 Sum_probs=123.0
Q ss_pred hhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHH--cCcccCCccchHHHHHHHHHHHHHHHHH
Q 017532 79 KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAV--LPIKLSNRQVGLDRFYELLDFVREKLAR 156 (370)
Q Consensus 79 ~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~--~~~~~g~~~~al~~l~~ll~~~~~~~~~ 156 (370)
+....++|+.-|.++.++.. +-..|.+..+..- +.+++|+..+-++++.+++...+..+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEg-----------------EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEG-----------------EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred cccCHHHHHHHHHHHHhccc-----------------ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 34589999999999977752 2244666666543 3478899999999999988776666532
Q ss_pred HhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 157 KLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
.-.+ ..++....-. .+-.+++ +.+.=|+..+..++.+.... --..+-..||.+|+..|++.+-.+.+.+.-
T Consensus 102 NySE---KsIN~IlDyi-StS~~m~---LLQ~FYeTTL~ALkdAKNeR--LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 102 NYSE---KSINSILDYI-STSKNMD---LLQEFYETTLDALKDAKNER--LWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred cccH---HHHHHHHHHH-hhhhhhH---HHHHHHHHHHHHHHhhhcce--eeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 2111 1111110000 0000000 00122333444444432111 111233678999999999999888888887
Q ss_pred HHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHH----HHHHHHHHHHhCCHHHHH
Q 017532 237 EMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN--DIVA----INNKALCLMYLRDLSDSI 310 (370)
Q Consensus 237 ~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~--~~~~----~~nla~~~~~~g~~~~A~ 310 (370)
..|....+.+........ -+++...-..|-.+.+..+-...|++++.+... +|.. .-.=|..+++.|++++|-
T Consensus 173 ~SCq~edGedD~kKGtQL-LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQL-LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHhccccCchhhhccchh-hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 776654321111111112 344444556666777777777789999887532 2221 112245678889999998
Q ss_pred HHHHHHHHhC
Q 017532 311 KVLENALERV 320 (370)
Q Consensus 311 ~~l~~al~~~ 320 (370)
..|=+|.+..
T Consensus 252 TDFFEAFKNY 261 (440)
T KOG1464|consen 252 TDFFEAFKNY 261 (440)
T ss_pred hHHHHHHhcc
Confidence 8887877653
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.58 E-value=4.5 Score=36.69 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 171 KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG-NG-L----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~-~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
+....+...||.+|-+.++|..|-..+.-+-... +. . .......+|++|+..||..+|..+..++--+...
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~--- 176 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE--- 176 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc---
Confidence 3345667789999999999999998877552222 20 1 1244578999999999999999999997644333
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++........-.+.++-..++|-||...|-+....
T Consensus 177 ----~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 177 ----SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355554444555677778889999998888776543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.97 Score=34.29 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=55.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCcchhH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRD-----------LSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~-----------~~~A~~~l~~al~~~p~~~~~~ 327 (370)
++.-++..|++-+|++..+.++..++++. ..+.--|.++.++.. +-.+++.+.+++.+.|.. .
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~---A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS---A 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---H
Confidence 46778899999999999999999987765 455556666654433 557889999999999876 6
Q ss_pred HHHHHHHHH
Q 017532 328 TLVVNLCSM 336 (370)
Q Consensus 328 ~~~~nl~~l 336 (370)
..+|+|+.-
T Consensus 79 ~~L~~la~~ 87 (111)
T PF04781_consen 79 HSLFELASQ 87 (111)
T ss_pred HHHHHHHHH
Confidence 666777654
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.26 Score=29.60 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
++..+|.+.+..++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455677777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.4 Score=39.07 Aligned_cols=65 Identities=9% Similarity=-0.014 Sum_probs=54.2
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCc
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD-LSDSIKVLENALERVPTV 323 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~-~~~A~~~l~~al~~~p~~ 323 (370)
|.+...-..+.+.+.+--+.|.+++..+|+++..|...|.-.+.-+. .+.|...|.++++.+|+.
T Consensus 108 W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 108 WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 44444444445558999999999999999999999999988887666 999999999999999986
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.28 E-value=13 Score=37.10 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=10.1
Q ss_pred HHHHHhcCCHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDL 196 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~ 196 (370)
++.+...|+.++|+.+
T Consensus 710 AEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEI 725 (1081)
T ss_pred HHHhhcccchhhhhhh
Confidence 4455666777777664
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.85 Score=40.73 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
...+...+..|...|.+.+|+++.++++..+| -+...+..+-+++..+||--+|+++|++..+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 34455666788899999999999999999999 88888999999999999999999999997654
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=3.9 Score=37.36 Aligned_cols=124 Identities=13% Similarity=-0.004 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc------------cCCccchHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF------------EDGLLSEVEFR 255 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~------------~~~~~~~p~~~ 255 (370)
.+..+-+..-..+++++| .-..++..|+. ...--+.+|++.|+++++....... +.....|.+..
T Consensus 198 Rnp~~RI~~A~~ALeIN~-eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl 274 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINN-ECATAYVLLAE--EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVL 274 (556)
T ss_pred cCcHHHHHHHHHHHhcCc-hhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchh
Confidence 555666667777888887 66666655543 2233456777777777654322100 00011223333
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI--VAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~--~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
..+...+++|..++|+..||++.|+...+..|--. .+.-|+-.+++...-|.+....+-
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666789999999999999999999887777322 345567777766655544444443
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.56 Score=42.09 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
|..+|.+|+.+.|.+...|+.+|++....|+.-+|+-+|-+++-..--+ ..+.-||..+++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf---~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF---PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999998654323 7788899988885
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.98 E-value=9.6 Score=34.79 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILV---SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~---~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
.+++...++.|++.||-+.|.+.+.+..+..- +...+.. ..+|..| +|.+--.+..++|-.+...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy---~D~~lV~~~iekak~liE~------- 173 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY---LDHDLVTESIEKAKSLIEE------- 173 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHh-------
Confidence 46677899999999999999999888765443 1122233 4445544 4444444455555554444
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
..|.+-+.......|.-.+.-.+|.+|-..|-.++..-
T Consensus 174 GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 174 GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 22333333344558999999999999999999887664
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.93 E-value=4.9 Score=36.00 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNG-------LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+++-..+.+++++|+..|.+++..+-. ....+...++.+|...|++..--+.....-+...+ ...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~-------ftk 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMED-------FTK 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHH-------hcc
Confidence 4555667779999999999999987541 23356788999999999987655554444333222 112
Q ss_pred HHHHHHHH-HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 252 VEFRNLVS-RNKALIYLVGKDYVSAVREYEECIERDYNDI------VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 252 p~~~~~~~-~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~------~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
|.. +.+. ...-..-.....++.-++.++..++---..- ..-..++.++++.|+|.+|+......+..
T Consensus 81 ~k~-~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 81 PKI-TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred hhH-HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 1111 1111222234556666666666655421111 22345778899999999999998877654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.22 Score=26.97 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q 017532 292 AINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l 313 (370)
+..++|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.67 E-value=3 Score=35.39 Aligned_cols=80 Identities=19% Similarity=0.011 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
-.-++|...|-++-....-+++.+.+.||..|. .-|.++|+..+.+++++.+.. ...+|+ +...++.+++
T Consensus 120 ~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~-----~~~n~e----il~sLas~~~ 189 (203)
T PF11207_consen 120 FGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD-----DNFNPE----ILKSLASIYQ 189 (203)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC-----CCCCHH----HHHHHHHHHH
Confidence 355678887777765555578899999998777 578899999999999886552 145554 4677899999
Q ss_pred HcCCHHHHHH
Q 017532 268 VGKDYVSAVR 277 (370)
Q Consensus 268 ~~g~~~eA~~ 277 (370)
.+|++++|.-
T Consensus 190 ~~~~~e~AYi 199 (203)
T PF11207_consen 190 KLKNYEQAYI 199 (203)
T ss_pred Hhcchhhhhh
Confidence 9999999853
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.67 E-value=7 Score=36.10 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
.+.-+.+|++|++.+| ++..++...-....+..+.++..+-+++++...+. .+.+ -..++..-...+..
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---------~~~L-W~~yL~~~q~~~~~ 115 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---------SPEL-WREYLDFRQSNFAS 115 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---------ChHH-HHHHHHHHHHHhcc
Confidence 4566889999999999 99988888888888888989989999999864322 2222 11222222222233
Q ss_pred CCHHHHHHHHHHHHhhC------C-----C-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 270 KDYVSAVREYEECIERD------Y-----N-------DIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~------p-----~-------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
-.+++....|.+++..- . . -..++.+++.-+...|..+.|+..++..++.+
T Consensus 116 f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 116 FTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 35777777887777551 0 0 11355677778889999999999999999985
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=16 Score=36.51 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL-----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
.++.+-|.-+++.++|..+++.|...+...+.+ .......++.+|+.+.++|.|.+++++|.+..+.+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~------- 427 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS------- 427 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc-------
Confidence 445567788999999999999999999887722 23556788999999999999999999999754432
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
| + ...+ .-.+....|.-++|+.........
T Consensus 428 --~-l-~q~~--~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 428 --P-L-CQLL--MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred --H-H-HHHH--HHHHHHHhcchHHHHHHHHHHHhh
Confidence 1 1 2223 444555788889998888777654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.57 E-value=3.7 Score=32.41 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 PILVSKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
....+++++++....+ ..+.+..++...+ . .+|+-+.+-.+.++..+++.|+|+.|+.+.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~---------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--S---------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--h---------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4455666777766544 4456666666663 1 122222344556788888888888888888888888
Q ss_pred CCCCHHHH
Q 017532 286 DYNDIVAI 293 (370)
Q Consensus 286 ~p~~~~~~ 293 (370)
+|+|..+.
T Consensus 101 e~~n~Qa~ 108 (149)
T KOG3364|consen 101 EPNNRQAL 108 (149)
T ss_pred CCCcHHHH
Confidence 88877654
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.68 Score=27.41 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHhHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 017532 259 SRNKALIYLVGKDYVSAVRE--YEECIERDYN 288 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~--~~~~l~~~p~ 288 (370)
+..+|..+..+|++++|+.. |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45567777778888888877 4466666654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.36 Score=28.10 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhc
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSL 93 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~ 93 (370)
.|+ ...|+..+.++|+.|+.++|.+.+++|
T Consensus 4 ~Pd--~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPD--VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCc--HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 355 344455588999999999999998876
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.51 E-value=15 Score=35.94 Aligned_cols=188 Identities=16% Similarity=0.051 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhh
Q 017532 169 WKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ--------VGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~a~~l~~ 240 (370)
|++-..-.++.++-++....+|..|...+..+.....+.+....+..|.++++ .|+-++|..+++....+..
T Consensus 298 ~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~ 377 (546)
T KOG3783|consen 298 MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLA 377 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 44444455667777777788888888888888877765555444555666644 3466667666666544432
Q ss_pred c---CCc-------------cCC-----ccch-HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHH-HHHHH
Q 017532 241 E---GKF-------------EDG-----LLSE-VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-DYNDIV-AINNK 296 (370)
Q Consensus 241 ~---~~~-------------~~~-----~~~~-p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-~p~~~~-~~~nl 296 (370)
. +.. ... .... |-. ..+++..|.--+...+..++...++ .-+. ++++.- -+..+
T Consensus 378 ~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~-El~Y~Wngf~~~s~~~l~k~~~~~~-~~~~~d~Dd~~lk~lL~ 455 (546)
T KOG3783|consen 378 NAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYY-ELAYFWNGFSRMSKNELEKMRAELE-NPKIDDSDDEGLKYLLK 455 (546)
T ss_pred hccccCchhHHHHHHHHHHhccccccccccccchHH-HHHHHHhhcccCChhhHHHHHHHHh-ccCCCCchHHHHHHHHH
Confidence 2 100 000 0000 222 2333333433333333332222222 2222 444443 34456
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 297 ALCLMYLRDLSDSIKVLENALER----VPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 297 a~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
|.++..+|+...|..++...++. .-+......++|.++.+|.-..+ .....+++|.+-+.+.
T Consensus 456 g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g-~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 456 GVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG-GLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc-ChHHHHHHHHHHHhhc
Confidence 77777788777777777776632 11222345677777777763333 4566666666654444
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.39 E-value=8.5 Score=34.09 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=98.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLE-GAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
-+.+..+-+.++.+++..+| .+...|...-.+....|++. .-.+....++.. +... -.+|..+--
T Consensus 90 l~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~rELef~~~~l~~------------DaKN-YHaWshRqW 155 (318)
T KOG0530|consen 90 LMSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD------------DAKN-YHAWSHRQW 155 (318)
T ss_pred hHHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccchHHHHHHHHhc------------cccc-hhhhHHHHH
Confidence 34567777888888888888 88888877777777788877 666777777741 2222 345556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hC-----CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY-LR-----DLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~-~g-----~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
+...-+.|+.-+.+..++++.|--|-.+|+.+=-+... .| ..+.=+.+..+.|...|.+ ++.+-.|+-+++
T Consensus 156 ~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N---eSaWnYL~G~l~ 232 (318)
T KOG0530|consen 156 VLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN---ESAWNYLKGLLE 232 (318)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC---ccHHHHHHHHHH
Confidence 77777789999999999998887777777765433322 22 2445567778888899988 888888888887
Q ss_pred h
Q 017532 339 L 339 (370)
Q Consensus 339 l 339 (370)
+
T Consensus 233 ~ 233 (318)
T KOG0530|consen 233 L 233 (318)
T ss_pred h
Confidence 6
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.4 Score=39.58 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=58.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..++..++..+...|+++.+++.+++.+..+|-+...|..+-.+|+..|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4556668888899999999999999999999999999999999999999999999999988763
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.14 E-value=11 Score=34.81 Aligned_cols=111 Identities=13% Similarity=-0.082 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGD------------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
.-+++.++.+| .+..+|..+....-..-. .+.-+..|++|++..++ +. ..+..+
T Consensus 6 ~el~~~v~~~P-~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~---------~~----~L~l~~ 71 (321)
T PF08424_consen 6 AELNRRVRENP-HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD---------SE----RLLLGY 71 (321)
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC---------CH----HHHHHH
Confidence 45778888999 999998777765544322 46778889999965322 22 223333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHh
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY---LRDLSDSIKVLENALER 319 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~---~g~~~~A~~~l~~al~~ 319 (370)
=.+..+..+.++..+.+++++..+|++...|..+-..... .-.+++....|.+++..
T Consensus 72 l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 72 LEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 3344566788888999999999999999887655433322 34577778888777765
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.6 Score=46.69 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
...+..++.++.+.|++++|+..-+++.-+.. ......+.+++...+..+....|...+.++..+..-...
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g-- 1050 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG-- 1050 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC--
Confidence 45667888999999999999998777743332 133345677787888888999999999999887654322
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-----CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-----YN---DIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-----p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
...|.. +.+..+++.++...++++.|+.+.+.+++.+ |. +...+..++....-.+++..|.........
T Consensus 1051 --e~hP~~-a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1051 --EDHPPT-ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --CCCCch-hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 356666 7777889999999999999999999999864 22 223445555555556666665555544443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.08 E-value=11 Score=35.42 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..++-+..++-..|+...-...+...+.... .....+.+.|-+.|+..+.++.|.+...+..- |.. .
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~------~ 241 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEA------A 241 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccc------c
Confidence 4445555566666776555555555543322 23345567777888888888888877776651 221 2
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
.+.++ +.-.+.+|.+...+++|..|.++|-+++...|++
T Consensus 242 snne~-ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 242 SNNEW-ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred ccHHH-HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 23344 5666678888888888888888888888888864
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.3 Score=42.01 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIG-------RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
.+..|..+++..|||..|+..++.+-- .-|..+..+++.+|.+|+-+++|.+|+..|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667788899999999999887621 11224567789999999999999999999999874
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.55 E-value=5.1 Score=38.75 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
...++..+.++|-++.|+.+. .|+...+. +.++.|+++.|.+..++.. + .
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFe---LAl~lg~L~~A~~~a~~~~--------------~----~ 347 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV---------TDPDHRFE---LALQLGNLDIALEIAKELD--------------D----P 347 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS---------S-HHHHHH---HHHHCT-HHHHHHHCCCCS--------------T----H
T ss_pred HHHHHHHHHHCCCHHHHHhhc---------CChHHHhH---HHHhcCCHHHHHHHHHhcC--------------c----H
Confidence 346677788889999998873 55555555 4568999988776554332 3 3
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..|..+|...+.+|+++-|.++|+++- + +..+...|.-.|+-+.-.+..+.+...
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d---~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK-----D---FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc-----C---ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 358889999999999999999999862 2 234666777788876655555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.48 E-value=2.7 Score=37.34 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
.+...++=..+.+.++++.|....++.+..+| .++.-+.-.|.+|.++|.+.-|++.++..++.+++
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P-~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNP-EDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCC-CChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 45556666788889999999999999999999 88888888999999999999999999998887776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.37 E-value=5.8 Score=39.89 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----------------------CCCCHHHHHHHHHHHHHhCCHHH
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER----------------------DYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----------------------~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
+......++.++|..+..+-.|++|.++|.+.-.. -|++...+--+|.++..-|--++
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 33334889999999999999999999999875221 25666666667777777777777
Q ss_pred HHHHHHH
Q 017532 309 SIKVLEN 315 (370)
Q Consensus 309 A~~~l~~ 315 (370)
|++.+-+
T Consensus 871 AV~a~Lr 877 (1189)
T KOG2041|consen 871 AVEAYLR 877 (1189)
T ss_pred HHHHHHh
Confidence 7776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.25 E-value=17 Score=34.58 Aligned_cols=73 Identities=10% Similarity=-0.017 Sum_probs=48.6
Q ss_pred CCCCCCCccccccCCCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHH
Q 017532 10 NPSRFTDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQ 87 (370)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~ 87 (370)
|--+.-.|-|-+. +..|. ++..|..+|++|..+.+.-+|+++.+.+....|. +..-.+++.++....+.--|.
T Consensus 100 P~l~~F~P~~l~~--~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~k--vq~~L~~LV~~~Ns~~~~~~E 172 (625)
T KOG4422|consen 100 PQLPVFRPRHLAD--PLQVE-TENNLLKMISSREVKDSCILYERMRSENVDVSEK--VQLELFRLVTYYNSSNVPFAE 172 (625)
T ss_pred ccccccCchhcCC--chhhc-chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHH--HHHHHHHHHHhhcCCCCcchh
Confidence 3333445544443 56666 8899999999999999999999998766333332 333345677777666665443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.12 E-value=5 Score=39.95 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=7.3
Q ss_pred HcCcccCCccchHHH
Q 017532 128 VLPIKLSNRQVGLDR 142 (370)
Q Consensus 128 ~~~~~~g~~~~al~~ 142 (370)
++....|+.+.|++.
T Consensus 711 EmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEI 725 (1081)
T ss_pred HHhhcccchhhhhhh
Confidence 333445555555543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.1 Score=29.43 Aligned_cols=60 Identities=8% Similarity=-0.093 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPI---LVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
.|.-++...+.++|+....++++..+ +.+. ++..+..+|...|++.+++++-.+=+.+..
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~-~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKIT-DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446688999999999999999887 5554 445566788999999999888776665543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.71 Score=42.26 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=62.6
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.....+.+.+-++.+.+..|+..-..+++.++....+++.++..+....++++|++.++.+....|++
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 45566788999999999999999888999899999999999999999999999999999999999986
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.98 Score=47.53 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=84.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH----cC---CHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQ----VG---DLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~----~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
.-..++..+.|+.|+..|+++....| .....+...+|...+. .| ++++|+..|++.- +...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 550 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----------GGVG 550 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----------CCCC
Confidence 33567778999999999999999888 1234667777776654 23 4666777776654 1122
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA-------INNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~-------~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
-| .-+..+|.+|...|+|+|-+++|.-++...|++|.. .+.+=.++.+. -..|...+--++..-|.
T Consensus 551 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 551 AP----LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPE 623 (932)
T ss_pred Cc----hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcc
Confidence 23 236778999999999999999999999998887642 22232332222 23444555555555554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.5 Score=42.43 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=69.4
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG---KDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~---g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
..+....|+..|.+++.-.+. . ...+.+++.++++. |+.-.|+.....+++++|....+++.++
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~------------~-~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPD------------A-IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccc------------h-hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 345566778888887753222 2 55666777777764 4555677778888999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.++..++++.+|+++...+....|+
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCch
Confidence 9999999999999999888888885
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.85 Score=27.36 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
.+..||.+.+..++|++|+.-|++++.+..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888886644
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=3 Score=40.09 Aligned_cols=85 Identities=13% Similarity=-0.153 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC-HH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD-YV 273 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~-~~ 273 (370)
.+|+.+....+ .|+.+|..-..-..+.+.+-+-...|.+++...|+ . ...|+.-|.-.+.-+. .+
T Consensus 92 ~lyr~at~rf~-~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~------------~-~dLWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 92 FLYRRATNRFN-GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN------------N-PDLWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------------C-chhHHhhhhhHHhhccchH
Confidence 44555555555 55555544433333344455555556555543222 2 3345545554444444 55
Q ss_pred HHHHHHHHHHhhCCCCHHHH
Q 017532 274 SAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 274 eA~~~~~~~l~~~p~~~~~~ 293 (370)
.|...|.+++..+|+.+..|
T Consensus 158 saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 158 SARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred HHHHHHHHHhhcCCCChHHH
Confidence 55555666666666655443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=32 Score=35.17 Aligned_cols=121 Identities=7% Similarity=-0.105 Sum_probs=75.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
-+...+.+.|...+.+........ ...+...+|.-....+..++|..+++.+... ..+.+. .+.
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----------~~~~~~-~e~-- 317 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----------SQSTSL-LER-- 317 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----------cCCcHH-HHH--
Confidence 335577788888888765544311 1233445554444443246777777765421 112222 222
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.-......++++.+..++..+-..........+-+|.++...|+.++|...|+++..
T Consensus 318 -r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 -RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred -HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 222444788888888888776444445677888899998889999999999988754
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.89 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
+..+...|.+.|++++|..+++++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 456667777778888888887777654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=88.16 E-value=20 Score=34.04 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGR-GNGLDPILVS--KLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~--~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
..+.-+++.++|..|..+++.+... .+......+. ..|.-++...++.+|.+.++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445667889999999999999985 3311223343 346667889999999999998874
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.02 E-value=24 Score=33.32 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGL--------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+...+++.+|..+-+..+..-... ....|+.+..+|...|+...=...+...++...- ..+.+-+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL-------rhd~e~q 208 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL-------RHDEEGQ 208 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh-------cCcchhH
Confidence 335577777777766665432211 2355677788888899977777776666544321 1122222
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIER--DYN--DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+...+.+=..|...+.|+.|-+...++.-- ..+ .....+.+|.+..-.++|..|.+++-+|+.+.|..
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 444445666778889999998877766411 122 23456678888899999999999999999999953
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.7 Score=27.08 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 294 NNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 294 ~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.++|.+|...|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.7 Score=37.62 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 228 AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 228 A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
|+.+|.+|..+.|.. +..++.+|.++...|+.-+|+-+|-+++......+.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~-------------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999887764 55678899999999999999999999998776678999999988887
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.42 E-value=1.3 Score=27.61 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
+.+|..|..+|+++.|..++++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46777888888888888888888753
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=87.25 E-value=0.98 Score=42.76 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
.+..|.+++..+|||..|++.++...- .+... -....+.. ...++..|.+|+.+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl-~~~~l---~~~V~~~~-is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDL-NKKGL---YTKVPACH-ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCc-ccchh---hccCcchh-eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999877531 11100 00112222 55677899999999999999999998864
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.63 E-value=3.5 Score=34.95 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDPILVSKLGFIQMQVGDLEGAK 229 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~lg~~~~~~g~~~~A~ 229 (370)
+..+.+|..|. ..|.++|+.++.++++.... -++..+..|+.++.+.|+++.|-
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55567777666 68999999999999998762 36789999999999999999873
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=86.54 E-value=1.1 Score=24.67 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+|+.+-.++.+.|++++|.+.+++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4566677777777777777777776543
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=86.29 E-value=3.1 Score=24.58 Aligned_cols=32 Identities=6% Similarity=-0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHH--HHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKV--LENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~--l~~al~~~p~ 322 (370)
..++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4567789999999999999999 4477777664
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.22 E-value=31 Score=32.65 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 171 KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
+...+++..++..|..-|+.+.|+..|.++ +-++.. -...+.++-.+...+|+|..-..+..+|.+-...+
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~-RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~----- 220 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRA-RDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN----- 220 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhh-hhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh-----
Confidence 333577889999999999999999999995 444411 23566778888999999998888888887531000
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
....+.....+...-|.+.+..++|..|..+|-.+.
T Consensus 221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 011122223345557888889999999999987664
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=86.21 E-value=5.3 Score=37.72 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=75.0
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
++.+++-.|..+|..+++.|.......+... ............+...++.||+++++.+.|+..-++.|..+| ....
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~--~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP-~~fr 263 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFK--ASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP-SYFR 263 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCC--CChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc-chhh
Confidence 6778888999999999988887654332100 001111111234556788999999999999999999999999 7766
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
-+...+.++..+.+|.+|-..+--+.-
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888877766543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.93 E-value=5.2 Score=38.85 Aligned_cols=90 Identities=11% Similarity=-0.098 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV---GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
.+.+..|+..|.+++...| .....+.+.+.++++. |+.-.|+.-...+++ .+|.. ..+++.++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~-~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr------------ln~s~-~kah~~la 452 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVP-DAIYLLENRAAALMKRKWRGDSYLALRDCHVALR------------LNPSI-QKAHFRLA 452 (758)
T ss_pred hHHHHHHHHHHHHHhhhcc-chhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc------------CChHH-HHHHHHHH
Confidence 3667888999999999988 7777887778888764 566667777777773 45655 67788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.++...+++.+|+.+...+....|.+.
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 999999999999998887777777543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.82 E-value=4.4 Score=38.89 Aligned_cols=99 Identities=4% Similarity=-0.159 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
...+.+....|+|+.|...+..+-..-. ....+...+-+....+|+++.|...-+-++. +. -.+|+.
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~-s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~---~e------ie~~ei--- 393 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIG-TTDSTLRCRLRSLHGLARWREALSTAEMMLS---NE------IEDEEV--- 393 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhc-CCchHHHHHHHhhhchhhHHHHHHHHHHHhc---cc------cCChhh---
Confidence 3556677788999999998877755444 3345666667788889999999887776662 21 234544
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
...-+...-..|-+++|.-.+++++.++|..-
T Consensus 394 -~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 394 -LTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred -eeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 22345556677889999999999999987643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.8 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
++.+...|.+.|++++|..+|+++.+.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4556667777788888888877776544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.61 E-value=11 Score=43.06 Aligned_cols=144 Identities=8% Similarity=-0.106 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+++...|.+-...|.++.|...+-.+.+... +.+....|..+++.||-..|+..+++.++++..+-. +.-...|.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~-~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH-TPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc-CCccccch
Confidence 67888899999999999999998888876654 678889999999999999999999999976543210 00011122
Q ss_pred HHHH-----HHHhHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHH------------HHHhCCHHH---HHH
Q 017532 254 FRNL-----VSRNKALIYLVGKDY--VSAVREYEECIERDYNDIVAINNKALC------------LMYLRDLSD---SIK 311 (370)
Q Consensus 254 ~~~~-----~~~~~g~~~~~~g~~--~eA~~~~~~~l~~~p~~~~~~~nla~~------------~~~~g~~~~---A~~ 311 (370)
.+.. +....+.-.-..|++ .+-+++|+.+.+..|.....++.+|.- ..++|++.. ++-
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~ 1825 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIY 1825 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHH
Confidence 2111 111222222233432 234678999999999766555555521 233445555 555
Q ss_pred HHHHHHHhCC
Q 017532 312 VLENALERVP 321 (370)
Q Consensus 312 ~l~~al~~~p 321 (370)
.|.+++..+.
T Consensus 1826 ~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1826 FFGRALYYGN 1835 (2382)
T ss_pred HHHHHHHhcc
Confidence 5566665543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.58 E-value=14 Score=36.71 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHH------------HHHHHH-HHHHHhCCHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERD--------YNDIV------------AINNKA-LCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~--------p~~~~------------~~~nla-~~~~~~g~~~~A~~~l~~a 316 (370)
|..+|...+..|++..|.++|.++-... ..+.. -.+|.| .++..+|+++++.+.+.+-
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4455666666666666666666653331 11111 123555 5788899999998888664
|
|
| >KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.16 E-value=50 Score=34.27 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=13.4
Q ss_pred hHHHHHHcCChHHHHHHHHH
Q 017532 34 SLQDLATRGSWRTIIDNVSR 53 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~ 53 (370)
=+..|.-+|.|+.||..+.+
T Consensus 474 Yf~~LlLsgqfe~AI~fL~~ 493 (835)
T KOG2168|consen 474 YFQVLLLSGQFERAIEFLHR 493 (835)
T ss_pred HHHHHHHHHhHHHHHHHHHh
Confidence 35566677777777766655
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.71 E-value=5.1 Score=34.47 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=42.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
++..+...+|+...+.-++-+|.+......+-..++-.|++++|...++-+-++.|++.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44667777777777777777777777666666777777777777777777777776653
|
|
| >PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.88 E-value=38 Score=32.48 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=19.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
....++.++|..|....++++++.|
T Consensus 307 M~~~~K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 307 MSQAFKLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HHHCCCTTBHHHHHHHHHHHHCT--
T ss_pred HHHHHHhccHHHHHHHHHHHHHcCC
Confidence 3556678999999999999998887
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=83.61 E-value=11 Score=33.28 Aligned_cols=67 Identities=12% Similarity=-0.053 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
.+...+|.-|+..|++++|.++|+.+....+... =......+...+-.|+...|+.++.+...-+++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3446789999999999999999999976554421 122236667778899999999998877655543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.50 E-value=97 Score=36.17 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.-...|...|++....|.++.|..+.-+|.+. .+ ..+.+.+|..+..+|+...|+..+++.++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~------------r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKES------------RL---PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc------------cc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 34578899999999999999999999888742 11 4567889999999999999999999999775
Q ss_pred -CC----------CH------HHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 287 -YN----------DI------VAINNKALCLMYLRD--LSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 287 -p~----------~~------~~~~nla~~~~~~g~--~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
|+ .. .+....+.-...+|+ .++-+++|..+.+..|.- +.-+|.++.-|
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew---e~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW---EDKHYHLGKYY 1799 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc---cCceeeHHHHH
Confidence 22 11 122223333334454 345678888999999864 55566666433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.7 Score=23.63 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
+|+.+-.++.+.|++++|.+.|.++.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 46677778888888888888888877653
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=83.26 E-value=20 Score=28.17 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=67.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
..+...+.....+.+++.++..++ .++.....+..+|.+.+ ..+.+.+++.- .. ..+++.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~~----~~-------~yd~~~------- 74 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDNK----SN-------HYDIEK------- 74 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHhc----cc-------cCCHHH-------
Confidence 345556889999999999999987 88888899999998764 45666666631 01 233333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
.+.++...+-+++++-.|.+. ..+..+.. .+....++++.|++++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~----~~~~~Al~---~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKD----GNFKDAIV---TLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhh----cCHHHHHH---HHHHcccCHHHHHHHHHh
Confidence 344555666777777666654 11111111 112233788888888876
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=82.77 E-value=7.3 Score=27.37 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=20.1
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIER-------DYNDIVA 292 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~-------~p~~~~~ 292 (370)
+...|.-+-..|++.+|+.+|+++++. .|+++.-
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 334555555667777666666665543 5776653
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.51 E-value=47 Score=32.53 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNR--------------------- 234 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------- 234 (370)
.++.++.+|... ..++=..+-+++++.+- ++...-..|+..|.+ ++.+++..+|.+
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL 177 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKL 177 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHH
Q ss_pred ----------HHHHhhcCCccCCccchHHHHHHHHHhHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 017532 235 ----------VEEMLNEGKFEDGLLSEVEFRNLVSRNKA-LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY- 302 (370)
Q Consensus 235 ----------a~~l~~~~~~~~~~~~~p~~~~~~~~~~g-~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~- 302 (370)
.+++..+ -+......+..+.+.-- .-|-...++.||++.+...++.+..|..+.-++..-+..
T Consensus 178 ~~~i~dD~D~fl~l~~k-----iqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~ 252 (711)
T COG1747 178 PELIGDDKDFFLRLQKK-----IQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDK 252 (711)
T ss_pred HHhccccHHHHHHHHHH-----HHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Q ss_pred -------------------hCCHHHHHHHHHHHHHhCCCc
Q 017532 303 -------------------LRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 303 -------------------~g~~~~A~~~l~~al~~~p~~ 323 (370)
-.++.+++..|++.+..+..+
T Consensus 253 y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 253 YRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.11 E-value=4.9 Score=40.79 Aligned_cols=114 Identities=21% Similarity=0.182 Sum_probs=81.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH--HHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY--LVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~--~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
|+..++.+++++|.--|..++.+.|.. +++. +....+.+-++ ...|+|.+++...+-++...|....++
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~--------~~~~-a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKD--------HHVV-ATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheecccc--------chhh-hhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 677788888888877787877665542 3333 44444455444 456789999998999999999988999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 294 NNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 294 ~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
+.++.+|.-.++++-|++.+.-.....|+.-...+....+-.+++
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~ 175 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE 175 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence 999999999999999999876667777875333343344444444
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=82.05 E-value=3.8 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
|+++.|...|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666666666666666666655544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=81.58 E-value=3.6 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
+..+...+.+.|+++.|..+++.+.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445556666667777777777666543
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=81.05 E-value=14 Score=29.64 Aligned_cols=49 Identities=22% Similarity=0.057 Sum_probs=38.6
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
..+..+.-.+..|++.-|.+....++..+|+|..+...++.++..+|.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3455777888999999999999999999999999999998888766543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.17 E-value=11 Score=37.39 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
++.++.|+++.|..+..++ ++..-|..||...+..|++..|.++|.++..
T Consensus 645 elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455668888887776665 6677789999999999999999999999864
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.03 E-value=44 Score=29.82 Aligned_cols=114 Identities=10% Similarity=-0.111 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 175 FVLNCLIGYHLSSKEYN-VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+++.+-.+.-..|++. .-+++.+.++..+. .+.-+|...-.+....++++.-.++..+.++..-.+
T Consensus 113 QvWHHRr~ive~l~d~s~rELef~~~~l~~Da-KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N----------- 180 (318)
T KOG0530|consen 113 QVWHHRRVIVELLGDPSFRELEFTKLMLDDDA-KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN----------- 180 (318)
T ss_pred hHHHHHHHHHHHhcCcccchHHHHHHHHhccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-----------
Confidence 45555555666678888 78899999999888 788888888888888999999999999988632221
Q ss_pred HHHHHHHhHHHHHHH-cC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLV-GK-----DYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~-~g-----~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
..+|..+=.+... .| ..+.-+.+..+.|...|+|..+|+-+.-.+..
T Consensus 181 --NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 181 --NSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 2233333333322 22 23344566777888899999999988766654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 370 | ||||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 4e-05 |
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLN----EGKFEDGLLSEVEFRNLVSRNKALIYLVG 269
+ ++ G A F + LN E + + E + ++ AL Y
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIA-LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
++Y A Y+E +++ N++ + A + D++++ E L+
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 6e-08
Identities = 18/154 (11%), Positives = 48/154 (31%), Gaps = 22/154 (14%)
Query: 198 NESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM---------------LNEG 242
++ + + + L ++L + + + A + + + + G
Sbjct: 43 WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102
Query: 243 KFEDGLLS-----EVEFRNLVSRNK--ALIYLVGKDYVSAVREYEECIERDYNDIVAINN 295
+ +D L ++E NL + YL + + + + A
Sbjct: 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162
Query: 296 KALCLMYLRDLSDSIKVLENALERVPTVALNETL 329
L ++ + L+ + R P+ +TL
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEM---LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271
G + ++ G L+ A+ F +V + NE K L + + R++AL D
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD-EMQRLRSQALNAFGSGD 158
Query: 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
Y +A+ ++ +E D +A C + + +I L+ A +
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLS----------EVEFRNLVSRNKALIYLVGKDY 272
++ K EE++ +G++ D E+ + +
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
V A+R E ++ + +++ A+ ++A + ++I+ E A E
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 12/110 (10%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS----------EVEFRNLVSRNKALIYLV 268
Q Q+ + ++ ++ G + + + E R +A ++
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE----LRAECFIK 189
Query: 269 GKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
+ A+ + + + ++ A + L D S+ + L+
Sbjct: 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 6/58 (10%), Positives = 21/58 (36%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
L A+ ++ ++ D ++ +A +A + + ++ L ++
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 18/156 (11%), Positives = 45/156 (28%), Gaps = 17/156 (10%)
Query: 213 SKLGFIQMQVGDLEGAKKSF----NRVEEMLNEGKFEDGLLSEVEFRNLVSR-------- 260
G + +++L G+ D L +F V
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADAL---SQFHAAVDGDPDNYIAY 63
Query: 261 -NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319
+A ++L +A+ + + I+ + A + L+ L ++ + L+
Sbjct: 64 YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123
Query: 320 VPTVALNETLVVNLCSMYEL-AYVNHSDIKRTLSSW 354
P+ + L E+ + + +
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 5/115 (4%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273
K+ + Q+GD E + + L++ + + A + Y
Sbjct: 216 KISTLYYQLGDHELSLSEVRECLK-LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274
Query: 274 SAVREYEECIERDYND----IVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324
A +YE ++ + + + + C ++I+V L+ P
Sbjct: 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 8e-09
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS-RNKALIYLVGKDY 272
+ G +E A+ F L +F N+ A IY + + +
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRF--------------LCIYDFYNVDYIMGLAAIYQIKEQF 86
Query: 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
A Y ND + + C + L+ + + E ++
Sbjct: 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 8e-09
Identities = 57/391 (14%), Positives = 125/391 (31%), Gaps = 114/391 (29%)
Query: 64 HHHLTY------LAYNTLALMKLRRFDEAQQELD--SLEDFNSSGYQYETYPHIY--PNR 113
HHH+ + Y + + F D ++D S E HI +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 114 -TGSMVPFSL---------------------RWLYAVLPIKLSNRQVGLDR--FYELLD- 148
+G++ F ++L + PIK RQ + + E D
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDR 118
Query: 149 -------FVREKLAR-KLAEKLEESVKSWKKREIFVLN--------CLIGYHLSSKEYNV 192
F + ++R + KL +++ + + +++ + S +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 193 CFDLMNE----SIGRGNGLDPIL--VSKLGFIQMQVGDLEGAKKSFN----------RVE 236
D + ++ N + +L + KL Q+ + S N +
Sbjct: 179 KMD--FKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 237 EMLNEGKFEDGL--LSEVE-------F----RNLV-SRNKALIYLVGKDYVSAVREYEEC 282
+L +E+ L L V+ F + L+ +R K + D++SA
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----DFLSAATTTHIS 290
Query: 283 IERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNET-LVVNLC------- 334
++ + K+L L K L+ + +P L +++
Sbjct: 291 LDHHSMTLTPDEVKSLLL----------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 335 -SMYE-LAYVNHSDIKRTLSSWIGRVAPDDF 363
+ ++ +VN + + S + + P ++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-08
Identities = 49/332 (14%), Positives = 100/332 (30%), Gaps = 111/332 (33%)
Query: 3 ESPP-VCQNPSRFTDPLTNA-FGSLNDLVPDLASLQD-LATRGSWRTI-IDNVSRARSQS 58
+ P V T+P + S++D LAT +W+ + D ++ S
Sbjct: 317 DLPREVLT-----TNPRRLSIIA---------ESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 59 LLTQ-PHHHLTYLAYNTLA------------LMKL---RRFDEAQQELDSLEDF-----N 97
L P + ++ L+ L + + ++ L +
Sbjct: 363 LNVLEPAEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 98 SSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK 157
+ P IY L+ +KL N L R
Sbjct: 421 PKESTI-SIPSIY---------LELK-------VKLENEY---------------ALHRS 448
Query: 158 LAEK--LEESVKSWKKREIFVLNCL-------IGYHLSSKEYNVCFDLMNESIGRGNGLD 208
+ + + ++ S + L IG+HL + E+ L LD
Sbjct: 449 IVDHYNIPKTFDSDD----LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LD 499
Query: 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF-RNLVSRNKALIYL 267
F++ + + ++N +LN L +++F + + N
Sbjct: 500 ------FRFLEQK---IRHDSTAWNASGSILN-------TLQQLKFYKPYICDNDPKYER 543
Query: 268 VGKDYVSAVREYEE-CIERDYNDIV--AINNK 296
+ + + + EE I Y D++ A+ +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEM---LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271
G + ++ G L+ A+ F +V + E K + L + + R++AL G D
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM-QRLRSQALDAFDGAD 135
Query: 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
Y +A+ ++ +E D +A C + + +I L+ A +
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 9/64 (14%), Positives = 24/64 (37%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
+A ++L +A+ + + I + A + L+ L ++ + L+
Sbjct: 42 RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 321 PTVA 324
P+
Sbjct: 102 PSEQ 105
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 6/58 (10%), Positives = 20/58 (34%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
L A+ ++ ++ D ++ +A +A + + ++ L +
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 37/142 (26%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRV---------------------------EEMLNEGKFED 246
K+ + Q+GD E + EE++ +G++ D
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
Query: 247 GLLS----------EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNK 296
E+ + + V A+R E ++ + +++ A+ ++
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312
Query: 297 ALCLMYLRDLSDSIKVLENALE 318
A + ++I+ E A E
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQE 334
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 13/105 (12%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273
D A +++ E+ + E R +A ++ +
Sbjct: 125 SQALDAFDGADYTAAITFLDKILEVCV---------WDAELRE----LRAECFIKEGEPR 171
Query: 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
A+ + + + ++ A + L D S+ + L+
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 5e-08
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273
+ I D F++ ++ D S V + ++ + + ++Y
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKL-------DSNNSSVYY------HRGQMNFILQNYD 321
Query: 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324
A +++++ E D +I A D + A + P
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 14/141 (9%), Positives = 40/141 (28%), Gaps = 36/141 (25%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEE---------------MLNEGKFEDGLLSEVEFRNLVS 259
L + + + + F+ + + ++ F+ L + +
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ---YDLAIE 400
Query: 260 R---------NKALIYLVG---------KDYVSAVREYEECIERDYNDIVAINNKALCLM 301
A + ++++ A E+ + D A A +
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460
Query: 302 YLRDLSDSIKVLENALERVPT 322
D+ ++I + E + + T
Sbjct: 461 QQEDIDEAITLFEESADLART 481
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/150 (12%), Positives = 42/150 (28%), Gaps = 27/150 (18%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274
G + + + + A K F++ +E L+ + + A + +
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKE-LDP-ENIFPYI-----------QLACLAYRENKFDD 356
Query: 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334
+ E + N A L D ++K + A+E
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK------------ 404
Query: 335 SMYELAYVNHSDIKRTLSSWIGRVAPDDFD 364
+ YV + + + ++F
Sbjct: 405 --LDGIYVGIAPLVGKATLLTRNPTVENFI 432
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 29/260 (11%), Positives = 69/260 (26%), Gaps = 36/260 (13%)
Query: 71 AYNTL--ALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAV 128
A L +F +A + D + +
Sbjct: 75 VLLRRASANEGLGKFADA------MFDLSVLSLNGDFNDA-----------------SIE 111
Query: 129 LPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188
++ + + + + E + A + + + K+E +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Query: 189 EYNVCFDLMNESI----GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244
+ + F +ES NGL + A + F + NE +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231
Query: 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304
L+ + + + D + A + ++ IE + + AL +
Sbjct: 232 LKEKLAISLE------HTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRN 284
Query: 305 DLSDSIKVLENALERVPTVA 324
D ++ + AL+ +
Sbjct: 285 DSTEYYNYFDKALKLDSNNS 304
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-08
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS-RNKALIYLVGKDY 272
LGF Q Q G + A+K F L ++ + Y
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQA--------------LCMLDHYDARYFLGLGACRQSLGLY 68
Query: 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
A++ Y D N+ + A C + L DL + +A
Sbjct: 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Query: 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267
DP ++ ++G + Q G+ + A+K F E + E + N N +
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN----NLGHVCR 247
Query: 268 VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
K Y A+ + + + + + + + +++ AL
Sbjct: 248 KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274
I ++ + E K +N K E +R + Y D+ +
Sbjct: 111 TADILTKLRNAEKELKKAEAEAY-VNPEKAE------------EARLEGKEYFTKSDWPN 157
Query: 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
AV+ Y E I+R D +N+A L L ++I A+E+ P
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 7/58 (12%), Positives = 20/58 (34%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
N+A +Y +A+ + +E+ + + + + L+ +E
Sbjct: 43 NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 30/288 (10%), Positives = 76/288 (26%), Gaps = 38/288 (13%)
Query: 71 AYNTL--ALMKLRRFDEAQQELDSLE---DFNSSGYQYETYPHIYPNRTGSMVPFSLRWL 125
A A L F +A +L L DF+ + + ++ + +
Sbjct: 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE 154
Query: 126 YAVLPIKLSNRQVG--LDRFYELLDFVREKLARKLAE---KLEESVKSWKKREIFVLNCL 180
+ SN + F L+ + L ++++
Sbjct: 155 GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214
Query: 181 IGYHL-SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM- 238
S+ Y+ + + G +L A+ +
Sbjct: 215 NDLLTKSTDMYHSLLSANTVDD-PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 239 -------------LNEGKFEDGLLSEVEFRNLVS---------RNKALIYLVGKDYVSAV 276
++ ++ F+ V ++ +Y + +DY +A
Sbjct: 274 PTPNSYIFLALTLADKENSQE---FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330
Query: 277 REYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324
++++ + ++ A L ++S + PT+
Sbjct: 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP 378
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED----GLLSEVEFRNLVSRNKALIYLVGK 270
I GD + A K ++ + L E + + G L ++ L +
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKR-LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442
Query: 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324
+ +A++ + E D A A + + + ++I++ E++ T+
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEEC 282
G + +++ L+ + + + N+ + K++ A++ Y+
Sbjct: 1 GSHMNGEPDIAQLKG-LSPSQRQA--YAVQLK------NRGNHFFTAKNFNEAIKYYQYA 51
Query: 283 IERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
IE D N+ V +N + C + DL I+ ALE
Sbjct: 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 27/135 (20%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEM---------------LNEGKFEDGLLSEVEFRNLV 258
L + + K F + ++ +++ ++ +F+
Sbjct: 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN---AKEDFQKAQ 337
Query: 259 S---------RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS 309
S A + + + + E + A L D +
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 310 IKVLENALERVPTVA 324
IK + A
Sbjct: 398 IKQYDIAKRLEEVQE 412
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267
DP+L+++LG + D++ A F ++ + + + + N Y
Sbjct: 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA------NLGHAYR 527
Query: 268 VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
K Y +A+ + + ND AL ++ + +I L +L
Sbjct: 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274
G + D +GA +F+ V++ + F N +Y + K+
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHSRICF----------------NIGCMYTILKNMTE 55
Query: 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
A + + I RD + VA + + +IK L+ AL ++
Sbjct: 56 AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-06
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N+A Y +Y AV++ E I D A L L L +++ + ALE
Sbjct: 51 NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Query: 321 PT 322
P
Sbjct: 111 PD 112
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 38.3 bits (90), Expect = 6e-04
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
+ + + +++ +AV Y + IE + + V N+A L + + +++ E A+
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 8e-06
Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 205 NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264
G ++ I +++ L+ A+K ++++ ED L+ ++
Sbjct: 126 QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLT------QLATAWVS 174
Query: 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324
+ G+ A ++E ++ ++ +N +A C M + VL+ AL++
Sbjct: 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-- 232
Query: 325 LNETLVVNLCSMYELAYVNHSDIKRTLS 352
+ ++NL + + R LS
Sbjct: 233 -HPETLINLVVLSQHLGKPPEVTNRYLS 259
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-06
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N+A Y ++ A+++ EECI+ + I KA L ++D + ++ V + AL+
Sbjct: 55 NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
Query: 321 P 321
Sbjct: 115 S 115
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
DY A++ Y E I+R+ D +N+A C L + ++K E ++ PT
Sbjct: 30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-05
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 13/125 (10%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273
L F Q Q G E A F + + + L Y
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFL-----------GLGACRQAMGQYD 72
Query: 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333
A+ Y D + + A CL+ +L+++ L A E + L +
Sbjct: 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132
Query: 334 CSMYE 338
SM E
Sbjct: 133 SSMLE 137
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
Y AV Y++ I + V +NKA+ L+ L + + +I++ + L T
Sbjct: 18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
KD+ +A++ Y++ E D ++ I N+A D + ++ E A+E
Sbjct: 18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIV-------AINNKALCLMYLRDLSDSIKVL 313
N+A +Y DY E+ IE + A D+I
Sbjct: 43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
Query: 314 ENALERVPT 322
+L T
Sbjct: 103 NKSLAEHRT 111
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 11/62 (17%), Positives = 19/62 (30%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N+A Y + A + E D A + L + D + + E +E
Sbjct: 50 NRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109
Query: 321 PT 322
Sbjct: 110 GN 111
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 13/129 (10%), Positives = 37/129 (28%), Gaps = 24/129 (18%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEM---------------LNEGKFEDGLLSEVEFRNLV 258
+ + + A + FN++E K++ + + V
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67
Query: 259 S---------RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS 309
+ I + A+++Y+ ++RD + + +
Sbjct: 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127
Query: 310 IKVLENALE 318
I+ +E +
Sbjct: 128 IQYMEKQIR 136
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 13/107 (12%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274
G I M+ G A + + + + + + + + ++
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVD-RDTTRLD------------MYGQIGSYFYNKGNFPL 126
Query: 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
A++ E+ I D Y ++ + LE P
Sbjct: 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-05
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N+A + A+ + + IE+D N + A KA + +++ + +++ L+ A +
Sbjct: 43 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102
Query: 321 P 321
Sbjct: 103 A 103
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319
R + Y D+ +AV+ Y E I+R D +N+A L L ++I A+E+
Sbjct: 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67
Query: 320 VPT 322
P
Sbjct: 68 DPN 70
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-05
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
KD+ A Y++ IE D ++I NNKA + ++ ++ E A+E
Sbjct: 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIV-------AINNKALCLMYLRDLSDSIKVL 313
NKA +Y K + V+ E+ +E A++ DLS +++
Sbjct: 47 NKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
Query: 314 ENALERVPTVALNETL 329
+L E +
Sbjct: 107 HRSLSEFRD---PELV 119
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-05
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N+A ++ A+ + + CI D I KA CL+ +R+ S + + E+AL+
Sbjct: 52 NRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111
Query: 321 PT 322
P+
Sbjct: 112 PS 113
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
DY +A+R Y E ++RD + + +N+A CL L + ++ + +
Sbjct: 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 1e-04
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N++ Y DY A + + ++ + + KA L +L ++ + E L+
Sbjct: 43 NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102
Query: 321 PTVALNETLVVNL 333
N L L
Sbjct: 103 AN---NPQLKEGL 112
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
N+AL YL + A+ + +E D + A C + + ++I L+ A
Sbjct: 48 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N++L YL + Y A+ + IE D I +A M L +++ E ++
Sbjct: 52 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111
Query: 321 PT 322
P
Sbjct: 112 PH 113
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 14/100 (14%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
+ L L + A +E +++ A + L +I L +A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 321 PTVALNETLVVNLCSMYELA--YVNHSDIK---RTLSSWI 355
P ++ LA + N + +L +W+
Sbjct: 82 PK---------DIAVHAALAVSHTNEHNANAALASLRAWL 112
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 27/134 (20%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEM---------------LNEGKFEDGLLSEVEFRNLVS 259
L I Q L+ + + G+ ++ + +R+ +
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE---AIEHYRHALR 95
Query: 260 ---------RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI 310
N A + D AV+ Y ++ + + ++ L L L ++
Sbjct: 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 311 KVLENALERVPTVA 324
A+E P A
Sbjct: 156 ACYLKAIETQPNFA 169
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 4e-04
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 309 SIKVLENAL-----ERVPTVALNETL 329
++K L+ +L + P +A+ T+
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
+ + + + +VAI + L + + + AL +
Sbjct: 417 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAAL 476
Query: 321 PT---VALN 326
VAL
Sbjct: 477 TNDHLVALA 485
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 13/137 (9%), Positives = 33/137 (24%), Gaps = 27/137 (19%)
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274
+ + ++ + + + + + S L +
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQ-----------QVVAIASNGGGKQAL--ETVQR 328
Query: 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334
+ + +VAI + L + + VL A P
Sbjct: 329 LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE------------ 376
Query: 335 SMYELAYVNHSDIKRTL 351
+A ++ K+ L
Sbjct: 377 --QVVAIASNGGGKQAL 391
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 14/91 (15%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
+ + + + +VAI + L + + VL A
Sbjct: 383 SNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 442
Query: 321 PTVALNETLVVNLCSMYELAYVNHSDIKRTL 351
P +A ++ + L
Sbjct: 443 PQ--------------QVVAIASNGGGRPAL 459
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
N+A +L +DY A E + IE+D D+ A+ ++ L L L ++ L+ +
Sbjct: 70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
Query: 321 P 321
P
Sbjct: 130 P 130
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR---NKALIYLVGKDYVSAVREY 279
++ A + + + D + + +N+ N A Y KDY A+
Sbjct: 52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111
Query: 280 EECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
+ ++ D N++ A+ + MY L ++ + L A P
Sbjct: 112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.86 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.86 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.84 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.83 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.82 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.82 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.8 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.8 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.8 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.78 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.78 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.78 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.76 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.76 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.75 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.74 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.74 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.73 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.73 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.73 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.73 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.72 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.72 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.72 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.71 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.69 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.67 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.67 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.66 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.66 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.65 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.64 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.64 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.63 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.6 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.55 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.55 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.55 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.55 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.54 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.52 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.51 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.5 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.49 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.47 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.45 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.45 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.45 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.44 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.4 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.4 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.39 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.38 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.38 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.36 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.35 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.35 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.34 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.34 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.29 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.27 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.25 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.24 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.19 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.16 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.11 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.1 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.08 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.01 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.93 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.9 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.81 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.72 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.67 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.67 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.59 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.58 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.53 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.44 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.11 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.99 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 97.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.86 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.84 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.48 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.27 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.23 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.13 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 97.09 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 97.08 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.92 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.75 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.6 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.33 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.94 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.78 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.74 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.62 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.17 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.16 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.7 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.6 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.92 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.56 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.14 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.36 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.19 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.91 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.41 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.65 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 85.1 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.95 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.87 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=197.49 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=152.7
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHH--------HhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHH
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLAR--------KLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~ 192 (370)
+.+....|++++|+..+..++...+..... ...+...++...+.+.+ ..++..+|.++...|++++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 344455677777777776665432211100 01223344455554443 4567778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|+..+++++..+| .++.++..+|.++...|++++|+..|++++++.++ + ..++.++|.++...|++
T Consensus 222 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~----~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 222 AVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---------F----PDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---------C----HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------C----HHHHHHHHHHHHHcCCH
Confidence 8888888888888 77788888888888888888888888888764332 1 34577788888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
++|+..|+++++.+|+++.+++++|.++...|++++|++.++++++.+|+. ....++++.+|.. .+..+.....+
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~--~g~~~~A~~~~ 362 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQ--QGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH--cCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888876 6777888888763 34456666666
Q ss_pred HHHhhhCCCC
Q 017532 353 SWIGRVAPDD 362 (370)
Q Consensus 353 ~~~~~~~~d~ 362 (370)
+...+..|+.
T Consensus 363 ~~a~~~~p~~ 372 (388)
T 1w3b_A 363 KEAIRISPTF 372 (388)
T ss_dssp HHHHTTCTTC
T ss_pred HHHHhhCCCC
Confidence 6666655554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-23 Score=192.72 Aligned_cols=288 Identities=14% Similarity=0.036 Sum_probs=216.5
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......+.+.|++++|+..+++++.. +|.+...+ ...+.++.+.|++++|...++++..+++..
T Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------- 100 (388)
T 1w3b_A 37 LLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAY-SNLGNVYKERGQLQEAIEHYRHALRLKPDF----------- 100 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHH-HHHHHHHHHCCCHHHHHHHHHHHHHcCcch-----------
Confidence 33445566777777777777776443 46543333 334777888888888888888875543211
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH------HH--HhhHhhHHhHHHHHHHH------HHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL------AR--KLAEKLEESVKSWKKRE------IFVL 177 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~------~~--~~~~~~~~~~~~~~~~~------~~~~ 177 (370)
. ......+.+....|+.++|+..+..++...+... .. ...+..+++.+.+.+.. ..++
T Consensus 101 ------~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 101 ------I--DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp ------H--HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 0 0112234444677889999888888765432211 10 11234455666666554 5678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..|++++.+.++. ..
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~ 238 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------------AV 238 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------------HH
Confidence 8899999999999999999999999999 889999999999999999999999999998764432 56
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|++ ...+.+++.+|
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---ADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999987 77889999998
Q ss_pred HhccCCchhhHHHHHHHHhhhCCCC
Q 017532 338 ELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 338 el~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.. .+..+....+++......|+.
T Consensus 316 ~~--~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 316 RE--QGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HT--TTCHHHHHHHHHHHTTSCTTC
T ss_pred HH--cCCHHHHHHHHHHHHhcCCCc
Confidence 73 445677777777666555553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=192.56 Aligned_cols=320 Identities=12% Similarity=0.066 Sum_probs=232.6
Q ss_pred CCCCCCcccCCCCCCCccccccC-CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh
Q 017532 1 MTESPPVCQNPSRFTDPLTNAFG-SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK 79 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~ 79 (370)
|++||+.... .+..+..++. +|.++.........+++.|+|++|+..+++++.. +|.+.. .+...+.++..
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~~~~ 72 (450)
T 2y4t_A 1 MHHHHHHSSG---VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-AYYRRATVFLA 72 (450)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-HHHHHHHHHHH
T ss_pred CCcccccccc---ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHH-HHHHHHHHHHH
Confidence 4555543332 2334444442 5566666677888999999999999999998654 476534 44445889999
Q ss_pred hcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH------H
Q 017532 80 LRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE------K 153 (370)
Q Consensus 80 l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~------~ 153 (370)
+|++++|...++++..+++.. + ......+.+....|++++|+..+..++...+. .
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 133 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDF------------------T-AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCc------------------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 999999999999986554211 1 11223455557789999999998887642111 0
Q ss_pred ---HH--------------HHhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 154 ---LA--------------RKLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 154 ---~~--------------~~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
+. ....+...+++..+.... ..+++.+|.++...|++++|+..|+++++.+| .++.
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 212 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence 00 011233445556655544 57888999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH--------HHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF--------RNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~--------~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
++..+|.++...|++++|+..|++++.+.++. +.. .......+|.+++..|++++|+..|+++
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDH---------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999775542 111 0112244599999999999999999999
Q ss_pred HhhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 283 IERDYNDI----VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 283 l~~~p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
++.+|+++ .++.++|.++...|++++|+..++++++.+|+. ..++++++.+|... +..+.+...++.....
T Consensus 284 l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 284 MKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN---VNALKDRAEAYLIE--EMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHh
Confidence 99999985 478999999999999999999999999999987 78899999998743 4477778887777777
Q ss_pred CCCC
Q 017532 359 APDD 362 (370)
Q Consensus 359 ~~d~ 362 (370)
.|++
T Consensus 359 ~p~~ 362 (450)
T 2y4t_A 359 NEND 362 (450)
T ss_dssp SSSC
T ss_pred Ccch
Confidence 6665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-21 Score=176.42 Aligned_cols=293 Identities=12% Similarity=0.064 Sum_probs=227.3
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......++..|+|++|+..+++++.. +|.+... +...+.++..+|++++|...++++..+++..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 70 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDG----DPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIALKMDF----------- 70 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----------
Confidence 34567889999999999999998654 4765444 3445889999999999999999986543211
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH---HHHHH--------------------HhhHhhHHhHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR---EKLAR--------------------KLAEKLEESVKS 168 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~---~~~~~--------------------~~~~~~~~~~~~ 168 (370)
. ......+.+....|+.++|+..+..++...+ ..... ...+...++++.
T Consensus 71 --~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 71 --T------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp --H------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --c------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 0 1123345555778999999998887764322 11100 012234455555
Q ss_pred HHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 017532 169 WKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 169 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~ 242 (370)
+.... ..++..+|.++...|++++|+..++++++..| .++.++..+|.++...|++++|+..|++++++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 55544 57888999999999999999999999999999 999999999999999999999999999999876552
Q ss_pred CccCCccchHHH--------HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhCCHHHHH
Q 017532 243 KFEDGLLSEVEF--------RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV----AINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 243 ~~~~~~~~~p~~--------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~----~~~nla~~~~~~g~~~~A~ 310 (370)
+.. .......+|.+++..|++++|+..|+++++.+|+++. ++.++|.++...|++++|+
T Consensus 222 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 222 ---------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 111 0112345699999999999999999999999999884 4678999999999999999
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 311 KVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 311 ~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
..++++++.+|+. ..++++++.+|.. .+..+.+...++...+..|++.
T Consensus 293 ~~~~~~~~~~~~~---~~~~~~~~~~~~~--~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 293 RICSEVLQMEPDN---VNALKDRAEAYLI--EEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHHCTTC---HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhCccc---HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCh
Confidence 9999999999987 7899999999975 4447888888888777777753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=186.74 Aligned_cols=267 Identities=14% Similarity=0.055 Sum_probs=204.6
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.+..........+.+.|+|++|+..+++++.. +|.+...+ ...+.++.+.|++++|...++++..+++..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 132 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAW-QFLGITQAENENEQAAIVALQRCLELQPNN----- 132 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence 34445677889999999999999999998654 47654444 445889999999999999999996554211
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHH--HHHHHHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKK--REIFVLNCLIGY 183 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~la~~ 183 (370)
+ ......+.+....|++++|+..+..++...+... ..|.. ....++..++.+
T Consensus 133 -------------~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 133 -------------L-KALMALAVSYTNTSHQQDACEALKNWIKQNPKYK------------YLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp -------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH------------CC-----------------
T ss_pred -------------H-HHHHHHHHHHHccccHHHHHHHHHHHHHhCccch------------HHHhhhccchHHHHHHHHH
Confidence 1 1122345555788999999999888876444321 11111 123455678999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGL--DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
+...|++++|+..|+++++..| . ++.++..+|.++...|++++|+.+|++++++.++. ..++.+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~ 252 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-------------YSLWNR 252 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------HHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------HHHHHH
Confidence 9999999999999999999999 7 89999999999999999999999999999765442 567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---------hHHHHHH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---------NETLVVN 332 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---------~~~~~~n 332 (370)
+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+... ...++.+
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 332 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAA 332 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987321 3567888
Q ss_pred HHHHHHhccC
Q 017532 333 LCSMYELAYV 342 (370)
Q Consensus 333 l~~lyel~~~ 342 (370)
++.++.....
T Consensus 333 l~~~~~~~g~ 342 (365)
T 4eqf_A 333 LRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCc
Confidence 9988875443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=176.59 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=196.8
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.++.++-.|+|..|++.+++.. ..+|.+......+.+.+++.+|++++|+.+++.. +++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~-------------- 63 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVK----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAP-------------- 63 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSC----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CCh--------------
Confidence 5788999999999999887743 3457654433334477999999999999988652 110
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--HHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--REKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (370)
....++ ..+......|+.++|++.+.+++..- +.. ..+++.+|.++...|+++
T Consensus 64 ----~~~a~~-~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~--------------------~~~~~~la~~~~~~g~~~ 118 (291)
T 3mkr_A 64 ----ELQAVR-MFAEYLASHSRRDAIVAELDREMSRSVDVTN--------------------TTFLLMAASIYFYDQNPD 118 (291)
T ss_dssp ----HHHHHH-HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC--------------------HHHHHHHHHHHHHTTCHH
T ss_pred ----hHHHHH-HHHHHHcCCCcHHHHHHHHHHHHhcccCCCC--------------------HHHHHHHHHHHHHCCCHH
Confidence 111222 23444467788888888877765321 100 145678899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH--HHHHHc
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA--LIYLVG 269 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g--~~~~~~ 269 (370)
+|+..+++ | .+..++..+|.++.++|++++|++.|++++++.++. .......| .++...
T Consensus 119 ~Al~~l~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-------------~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 119 AALRTLHQ-----G-DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-------------TLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHTT-----C-CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-------------HHHHHHHHHHHHHhCc
Confidence 99999988 6 888999999999999999999999999999764431 11111122 333456
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHH
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKR 349 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~ 349 (370)
|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|++ ..+++|++.++..... ..+...
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~l~~l~~~~~~~g~-~~eaa~ 255 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH---PETLINLVVLSQHLGK-PPEVTN 255 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC-CHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-CHHHHH
Confidence 899999999999999999999999999999999999999999999999999998 8889999988875433 334556
Q ss_pred HHHHHHhhhCCCCC
Q 017532 350 TLSSWIGRVAPDDF 363 (370)
Q Consensus 350 ~ll~~~~~~~~d~~ 363 (370)
.+++++....|++.
T Consensus 256 ~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 256 RYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCh
Confidence 77777777777763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=182.46 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=216.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.+.+++........++..|+|++|++.+++++.. +|.+.. .+...+.++..+|++++|...+.++...++..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 89 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHAS-CLPVHIGTLVELNKANELFYLSHKLVDLYPSN--- 89 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTT-THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChh-hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---
Confidence 3466666777888999999999999999997654 465433 33334778899999999999999986543211
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccC-CccchHHHHHHHHHHHHHH------HH--HHhhHhhHHhHHHHHHHH-
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLS-NRQVGLDRFYELLDFVREK------LA--RKLAEKLEESVKSWKKRE- 173 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g-~~~~al~~l~~ll~~~~~~------~~--~~~~~~~~~~~~~~~~~~- 173 (370)
+ ......+.+....| ++++|+..+..++...+.. +. ....+...++...+....
T Consensus 90 ---------------~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 90 ---------------P-VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp ---------------T-HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------H-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0 11222344456778 8888998888776432211 00 012233445555555544
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 -----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
..++..+|.++...|++++|+..++++++..| .++.++..+|.++...|++++|+.+|++++++.+.. +.
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~ 228 (330)
T 3hym_B 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI----GN 228 (330)
T ss_dssp HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT----SC
T ss_pred hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc----cc
Confidence 35677899999999999999999999999999 899999999999999999999999999999876552 21
Q ss_pred cch-HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH
Q 017532 249 LSE-VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 249 ~~~-p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 327 (370)
... |.. ..++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+++++.+|++ .
T Consensus 229 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 304 (330)
T 3hym_B 229 EVTVDKW-EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD---T 304 (330)
T ss_dssp SCTTTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC---H
T ss_pred cccccHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc---h
Confidence 111 333 56788999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHhc
Q 017532 328 TLVVNLCSMYELA 340 (370)
Q Consensus 328 ~~~~nl~~lyel~ 340 (370)
.....++.+++..
T Consensus 305 ~~~~~l~~~~~~~ 317 (330)
T 3hym_B 305 FSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8888999888643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=178.03 Aligned_cols=253 Identities=9% Similarity=0.082 Sum_probs=180.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhc-CHHHHHHHhhhcCCCCCCCCc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR-RFDEAQQELDSLEDFNSSGYQ 102 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~-~~~~A~~~~~~~~~l~~~~~~ 102 (370)
.|.+.......+..+...|++++|+..+.+++.. +|.+...++. .+.++...| ++++|...++++..+++...
T Consensus 52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~-l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~- 125 (330)
T 3hym_B 52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFA-VGCYYLMVGHKNEHARRYLSKATTLEKTYG- 125 (330)
T ss_dssp CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHH-HHHHHHHSCSCHHHHHHHHHHHHTTCTTCT-
T ss_pred CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHhCCccH-
Confidence 4455555556778889999999999999998654 4665444444 478899999 99999999999976653111
Q ss_pred ccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH------HH--HHhhHhhHHhHHHHHHHH-
Q 017532 103 YETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK------LA--RKLAEKLEESVKSWKKRE- 173 (370)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~------~~--~~~~~~~~~~~~~~~~~~- 173 (370)
......+.+....|++++|+..+..++...+.. +. ....+...++.+.+....
T Consensus 126 ------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 126 ------------------PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp ------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112234555577899999999998877553321 00 012334455666666655
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 -----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP--ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
..+++.+|.++...|++++|+..+++++...+ ... ........++...|..-.....+++|+.......
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--- 263 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK-AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL--- 263 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh-hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---
Confidence 67889999999999999999999999998764 111 0001124567777777777777788876654311
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhCCHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL-MYLRDLS 307 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~-~~~g~~~ 307 (370)
..+|+. ..++..+|.++...|++++|+++|+++++++|+++.++..++.++ ...|+.+
T Consensus 264 --~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 264 --VLIPQN-ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp --HHSTTC-SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred --hhCccc-hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 123333 567889999999999999999999999999999999999999998 4666654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=195.79 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=213.3
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
+......+..+++.|++++|+..++++... +|.+...+ ...+.++.+.|++++|...++.+....+.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------- 372 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEI----DPYNLDVY-PLHLASLHESGEKNKLYLISNDLVDRHPEK------- 372 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCCTTH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----CcccHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhCccc-------
Confidence 333444667778888888888888887643 25432333 334677788888888888887774322110
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhHhhHHhHHHHHHHH------
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAEKLEESVKSWKKRE------ 173 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~------ 173 (370)
+.. ....+.++...|+.++|+..+..++...+.... ....+..+++.+.+.+..
T Consensus 373 -----------~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 373 -----------AVT-WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp -----------HHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred -----------HHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 111 122344457789999999999887653221110 012344556666766654
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.++.++...|++++|+..|+++++..| .++.++..+|.++.+.|++++|++.|++++++.++. ..+|+
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~p~ 513 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------QSNEK 513 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------CCCSG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------ccchh
Confidence 46788999999999999999999999999999 899999999999999999999999999999876542 12333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
....++..+|.++...|++++|++.|+++++.+|+++.++.++|.++...|++++|++.|+++++.+|++ .....++
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 590 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE---IMASDLL 590 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHHH
Confidence 1146788899999999999999999999999999999999999999999999999999999999999998 8888999
Q ss_pred HHHHH
Q 017532 334 CSMYE 338 (370)
Q Consensus 334 ~~lye 338 (370)
+.+|+
T Consensus 591 ~~~~~ 595 (597)
T 2xpi_A 591 KRALE 595 (597)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=180.15 Aligned_cols=282 Identities=10% Similarity=0.081 Sum_probs=217.3
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.|.+..........+...|++++|+..+.+++.. +|.+... +...+.++.++|++++|...++++..+++....
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 129 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE- 129 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH-
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-
Confidence 3444444555677889999999999999998654 4765333 444588999999999999999999766532110
Q ss_pred cccCCCCCCCCCcccch-hH--------HHHHHHcCcccCCccchHHHHHHHHHHHHHHHH------H--HhhHhhHHhH
Q 017532 104 ETYPHIYPNRTGSMVPF-SL--------RWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA------R--KLAEKLEESV 166 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-~~--------r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~------~--~~~~~~~~~~ 166 (370)
....+ .+ ....+.+....|++++|+..+..++...+.... . ...+...++.
T Consensus 130 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 130 ------------EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 00000 00 111234456789999999999887654322111 0 1223445566
Q ss_pred HHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHH
Q 017532 167 KSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKL------------GFIQMQVGDLEGA 228 (370)
Q Consensus 167 ~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~l------------g~~~~~~g~~~~A 228 (370)
..+.... ..+++.+|.++...|++++|+..+++++...| .+...+..+ |.++...|++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6665544 57889999999999999999999999999999 888777665 9999999999999
Q ss_pred HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH
Q 017532 229 KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 229 ~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
+.+|++++++.+. ++......+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++
T Consensus 277 ~~~~~~~l~~~p~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 277 TSKYESVMKTEPS---------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp HHHHHHHHHHCCS---------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhcCCc---------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 9999999986543 4444356788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
|+..|+++++.+|++ ..+...++.+
T Consensus 348 A~~~~~~al~~~p~~---~~~~~~l~~~ 372 (450)
T 2y4t_A 348 AIQDYETAQEHNEND---QQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHTTSSSC---HHHHHHHHHH
T ss_pred HHHHHHHHHHhCcch---HHHHHHHHHH
Confidence 999999999999997 6777777743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-20 Score=172.44 Aligned_cols=291 Identities=10% Similarity=0.066 Sum_probs=219.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC---CC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS---SG 100 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~---~~ 100 (370)
.|.+..........+...|+|++|+..+++++.. +|.+... +...+.++...|++++|...++++..+++ ..
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcchH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 3444445556778889999999999999998654 4765433 44458899999999999999999976543 11
Q ss_pred CcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH--------HhhHhhHHhHHHHHHH
Q 017532 101 YQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR--------KLAEKLEESVKSWKKR 172 (370)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~ 172 (370)
...... -+...........+.+....|+.++|+..+..++...+..... ...+...++...+...
T Consensus 108 ~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 108 KEAESQ-------LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000000 0000000001112455678899999999998877543221110 1233445566666665
Q ss_pred H------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHH
Q 017532 173 E------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVS------------KLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 173 ~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~ 234 (370)
. ..+++.+|.++...|++++|+..++++++..| .+...+. .+|.++...|++++|+..|++
T Consensus 181 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 181 SKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 259 (359)
T ss_dssp HTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 67889999999999999999999999999999 8776553 448889999999999999999
Q ss_pred HHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 235 VEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 235 a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
+++..++ ++......+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+
T Consensus 260 ~~~~~~~---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 260 VMKTEPS---------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHCCS---------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCC---------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9986544 3433356678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 315 NALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
++++.+|++ ..+...+..++..
T Consensus 331 ~a~~~~p~~---~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 331 AAQEHNEND---QQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCTTC---HHHHHHHHHHHHH
T ss_pred HHHhcCCCC---hHHHHHHHHHHHH
Confidence 999999998 7777788777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=186.16 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=222.8
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
.+.+.|++++|++.++++... |.+... +...+.++.+.|++++|...++++...++.+.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 339 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL-----EKSSDL-LLCKADTLFVRSRFIDVLAITTKILEIDPYNL--------------- 339 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG-----GGCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC---------------
T ss_pred HHcCcchHHHHHHHHHHhhcC-----CchHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH---------------
Confidence 345789999999999987543 443333 44458899999999999999999864432110
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhHhhHHhHHHHHHHH------HHHHHHHHH
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAEKLEESVKSWKKRE------IFVLNCLIG 182 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~------~~~~~~la~ 182 (370)
.. + ...+.+....|+.++|+..+..++...+.... ....+..+++.+.+.+.. ..+++.++.
T Consensus 340 -~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 340 -DV--Y-PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415 (597)
T ss_dssp -TT--H-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HH--H-HHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11 1 12233346789999999999887644221110 012334556666666654 568889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
++...|++++|+..|+++++..| .+..++..+|.++.+.|++++|+++|++++++.+. + ..++..+
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~----~~~~~~l 481 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---------D----PLLLNEL 481 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---------C----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------C----hHHHHHH
Confidence 99999999999999999999999 89999999999999999999999999999976443 2 4568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 263 ALIYLVGKDYVSAVREYEECIER------DYND-IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~------~p~~-~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
|.++...|++++|++.|+++++. +|++ ..+++++|.++...|++++|++.++++++.+|++ ..++++++.
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 558 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND---ANVHTAIAL 558 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHH
Confidence 99999999999999999999998 6665 7899999999999999999999999999999987 788999999
Q ss_pred HHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 336 MYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 336 lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+|.. .+..+....+++++....|++
T Consensus 559 ~~~~--~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 559 VYLH--KKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHH--hCCHHHHHHHHHHHHhcCCCC
Confidence 9975 445788888888887777775
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=177.14 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=209.7
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.+..........+...|+|++|+..+++++.. +|.+...+ ...+.++...|++++|...++++..+++..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----- 88 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKD----- 88 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-----
Confidence 34455677888999999999999999998654 47654444 345888999999999999999986553211
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHH-----HHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKR-----EIFVLNCL 180 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l 180 (370)
+ ......+.+....|++++|+..+..++...+... ..|... .......+
T Consensus 89 -------------~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 89 -------------I-AVHAALAVSHTNEHNANAALASLRAWLLSQPQYE------------QLGSVNLQADVDIDDLNVQ 142 (327)
T ss_dssp -------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT------------TC-----------------
T ss_pred -------------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH------------HHHHHHhHHHHHHHHHHHH
Confidence 0 1122345555778999999988887764322111 000000 00111133
Q ss_pred -HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 181 -IG-YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 181 -a~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
+. ++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|++++++.+.. ..+
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~ 208 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------------AQL 208 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHH
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------------HHH
Confidence 33 47788999999999999999999 899999999999999999999999999999764432 456
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---------chhHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV---------ALNETL 329 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~---------~~~~~~ 329 (370)
+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.++++++..|+. .....+
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999982 113778
Q ss_pred HHHHHHHHHhccCCchhhHHHHHHH
Q 017532 330 VVNLCSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 330 ~~nl~~lyel~~~~~~~~~~~ll~~ 354 (370)
+.+++.+|....+ .+....+.+.
T Consensus 289 ~~~l~~~~~~~g~--~~~A~~~~~~ 311 (327)
T 3cv0_A 289 WDFFRMLLNVMNR--PDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHTTC
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHH
Confidence 8999999875433 5555555543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-20 Score=179.85 Aligned_cols=285 Identities=12% Similarity=0.072 Sum_probs=209.9
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......+++.|+|++|+..+++++.. +|.+... +...+.++.++|++++|...++++..+++...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------- 93 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVF-YSNISACYISTGDLEKVIEFTTKALEIKPDHS---------- 93 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH----------
Confidence 33566788888888888888887554 4665433 34457888888888888888888865542110
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH------------------------HH--------------
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR------------------------EK-------------- 153 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~------------------------~~-------------- 153 (370)
......+.+....|+.++|+..+..+ ...+ ..
T Consensus 94 ---------~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 94 ---------KALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp ---------HHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 11222344446667777777666321 0000 00
Q ss_pred ------------------------------------HHH----------HhhHhhHHhHHHHHHHH-------------H
Q 017532 154 ------------------------------------LAR----------KLAEKLEESVKSWKKRE-------------I 174 (370)
Q Consensus 154 ------------------------------------~~~----------~~~~~~~~~~~~~~~~~-------------~ 174 (370)
+.. ...+...+++..+...+ +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 000 00012223333333322 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+|.++...|++++|+..+++++...| . ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 309 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHP-T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------------ 309 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------------
Confidence 5688999999999999999999999999999 7 8899999999999999999999999999764442
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|++.++++++.+|+. ..++++++
T Consensus 310 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~ 385 (537)
T 3fp2_A 310 -PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL---PEVPTFFA 385 (537)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHH
Confidence 55688899999999999999999999999999999999999999999999999999999999999987 77889999
Q ss_pred HHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 335 SMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
.+|... +..+.....++......|+
T Consensus 386 ~~~~~~--g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 386 EILTDR--GDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCHHHHHHHHHHHHHcCCc
Confidence 998743 4467777777665544443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=175.47 Aligned_cols=279 Identities=14% Similarity=0.061 Sum_probs=208.4
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
..........++..|+|++|+..+.+++.. +|.+...+ ...+.++...|++++|...++++..+++..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAW-QYLGTTQAENEQELLAISALRRCLELKPDN------- 131 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHH-HHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-------
Confidence 344567888999999999999999998654 47654444 445889999999999999999986554211
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS 187 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (370)
+ ......+.+....|++++|+..+..++...+........ .... .. ..........++.++ ..
T Consensus 132 -----------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 132 -----------Q-TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP--AEEG-AG-GAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp -----------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------CTTHHHH-HH
T ss_pred -----------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH--HHHH-hh-hhcccHHHHHHHHHh-hc
Confidence 1 112234555577899999999888876543221100000 0000 00 000011222455555 88
Q ss_pred CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGL--DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
|++++|+..++++++..| . ++.++..+|.++...|++++|+.+|++++++.++. ..++.++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~l~~~ 260 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------------YLLWNKLGAT 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------------HHHHHHHHHH
Confidence 999999999999999999 7 78999999999999999999999999999764432 5578889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc--------hhHHHHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA--------LNETLVVNLCSMY 337 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~--------~~~~~~~nl~~ly 337 (370)
+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++..|+.. ....++.+++.+|
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988651 1257888999999
Q ss_pred HhccCCchhhHHHH
Q 017532 338 ELAYVNHSDIKRTL 351 (370)
Q Consensus 338 el~~~~~~~~~~~l 351 (370)
....+ .+....+
T Consensus 341 ~~~g~--~~~A~~~ 352 (368)
T 1fch_A 341 SMLGQ--SDAYGAA 352 (368)
T ss_dssp HHHTC--GGGHHHH
T ss_pred HHhCC--hHhHHHh
Confidence 86554 3444433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-20 Score=154.41 Aligned_cols=169 Identities=10% Similarity=0.008 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.+++++|.++..+|+|++|+..|+++++.+| .++.++..+|.++...|++++|+..++++....+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----------- 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----------
Confidence 36788999999999999999999999999999 999999999999999999999999999999764442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
..++...|.++...+++++|+..+++++..+|.+..++..+|.++...|++++|++.|+++++.+|++ ..+++++
T Consensus 73 --~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 147 (184)
T 3vtx_A 73 --AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF---IRAYQSI 147 (184)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh---hhHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+.+|... +..+++....++.-+..|+
T Consensus 148 g~~~~~~--g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 148 GLAYEGK--GLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHhCCcc
Confidence 9999854 4467777777766555554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=163.26 Aligned_cols=187 Identities=16% Similarity=0.077 Sum_probs=154.8
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+.+....|++++|+..+..++...+.. ..+++.+|.++...|++++|+..|+++++.+|
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P- 70 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQD--------------------PEALYWLARTQLKLGLVNPALENGKTLVARTP- 70 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 444467788888888777765332211 25667899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH
Q 017532 207 LDPILVSKLGFIQMQV-----------GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA 275 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA 275 (370)
+++.++..+|.++... |++++|+..|++++++.|+. ..++.++|.++...|++++|
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------------~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------------APLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------------HHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999 99999999999999765542 56788999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHH
Q 017532 276 VREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 276 ~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
+..|+++++++ +++.+++++|.++...|++++|+..|+++++.+|++ ..+.++++.++... +..++....++
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~--g~~~~A~~~~~ 209 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD---LDLRVRYASALLLK--GKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHc--cCHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999998 88899999998643 33444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=157.49 Aligned_cols=169 Identities=13% Similarity=0.013 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| .++.++..+|.++.+.|++++|+..|++++++.|+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------------ 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------------ 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------
Confidence 4567899999999999999999999999999 999999999999999999999999999999765542
Q ss_pred HHHHHHhHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVG-----------KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~-----------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..++.++|.++... |++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++ ++
T Consensus 73 -~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 73 -LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred -HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 66788999999999 999999999999999999999999999999999999999999999999999 66
Q ss_pred chhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 324 ALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 324 ~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
..++++++.+|... +..+.....++......|++.
T Consensus 151 ---~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 151 ---PEIRSALAELYLSM--GRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp ---HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCH
T ss_pred ---hHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCh
Confidence 78899999999754 446777777777777777653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=187.40 Aligned_cols=162 Identities=15% Similarity=0.038 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.+++++|.++..+|++++|+..|+++++.+| ++..+++++|.++.++|++++|+.+|++++++.++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------------ 75 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------------ 75 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Confidence 46788999999999999999999999999999 99999999999999999999999999999976554
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
. ..++.++|.++..+|++++|++.|+++++++|+++.+++|+|.++...|++++|++.|+++++++|++ ..+++||
T Consensus 76 ~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~---~~a~~~L 151 (723)
T 4gyw_A 76 F-ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF---PDAYCNL 151 (723)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHhhh
Confidence 2 67899999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHhccCCchhhHHHHHHH
Q 017532 334 CSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~ 354 (370)
+.+|....+ .+...+..++
T Consensus 152 ~~~l~~~g~--~~~A~~~~~k 170 (723)
T 4gyw_A 152 AHCLQIVCD--WTDYDERMKK 170 (723)
T ss_dssp HHHHHHTTC--CTTHHHHHHH
T ss_pred hhHHHhccc--HHHHHHHHHH
Confidence 999986544 3334433333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=175.33 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..++++++..| . ..++..+|.++...|++++|+..|++++.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------ 302 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN------------ 302 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC------------
Confidence 46778899999999999999999999999999 6 889999999999999999999999999854333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
. ..++..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++.+|+. ...++++
T Consensus 303 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 378 (514)
T 2gw1_A 303 N-SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA---PEVPNFF 378 (514)
T ss_dssp C-THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC---SHHHHHH
T ss_pred C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC---HHHHHHH
Confidence 2 55678899999999999999999999999999999999999999999999999999999999999987 6788899
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+.+|... +..+....+++......|++
T Consensus 379 a~~~~~~--~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 379 AEILTDK--NDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhhhcc
Confidence 9888743 34667777766665544443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=172.47 Aligned_cols=266 Identities=10% Similarity=0.003 Sum_probs=196.6
Q ss_pred HHHcCChHHHHH-HHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 38 LATRGSWRTIID-NVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 38 l~~~g~~~~Ai~-~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
..-.|+|++|+. .+.+++... ..+|......+...+.++.+.|++++|...++++...++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 97 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE-EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------- 97 (368)
T ss_dssp -----------CHHHHCCCCCC-SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcC-CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------
Confidence 345689999998 888765432 12232112223445888999999999999999997654311
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDL 196 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 196 (370)
+ ......+.+....|++++|+..+..++...+.. ..++..+|.++...|++++|+..
T Consensus 98 --~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 98 --M-EAWQYLGTTQAENEQELLAISALRRCLELKPDN--------------------QTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp --H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --H-HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 112234555677899999998888776432211 24567899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 197 MNESIGRGNGLDPILVS----------------KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 197 ~~~~l~~~~~~~~~~~~----------------~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
+++++...| .+...+. .+|.++ ..|++++|+.+|++++++.+.. .+ ..++.
T Consensus 155 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-------~~----~~~~~ 221 (368)
T 1fch_A 155 LRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-------ID----PDVQC 221 (368)
T ss_dssp HHHHHHTST-TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-------CC----HHHHH
T ss_pred HHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-------cc----HHHHH
Confidence 999999999 6655543 467766 8999999999999999875541 11 56688
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
++|.++...|++++|+..|++++..+|+++.+++++|.++...|++++|+..|+++++.+|+. ..++++++.+|...
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHC
Confidence 899999999999999999999999999999999999999999999999999999999999987 78899999999754
Q ss_pred cCCchhhHHHHHHHHhhhCCC
Q 017532 341 YVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 341 ~~~~~~~~~~ll~~~~~~~~d 361 (370)
. ..+.....++......|+
T Consensus 299 g--~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 299 G--AHREAVEHFLEALNMQRK 317 (368)
T ss_dssp T--CHHHHHHHHHHHHHHHHT
T ss_pred C--CHHHHHHHHHHHHHhCCC
Confidence 3 366777777666554444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=173.27 Aligned_cols=246 Identities=9% Similarity=-0.008 Sum_probs=197.5
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcC-HHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRR-FDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~-~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.......+.+.|++++|+..+++++.. +|.+ ...|..++.++..+|+ +++|+..++++..+++-..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~-------- 166 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIEL----NAAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-------- 166 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--------
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh----CccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--------
Confidence 344566778899999999999998654 6875 4455567999999997 9999999999977664221
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
..|. ..+.+....|++.+|+..+..++...+.. ..+++.+|.++...|+
T Consensus 167 --------~a~~---~~g~~~~~~g~~~eAl~~~~kal~ldP~~--------------------~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 167 --------QVWH---HRRVLVEWLRDPSQELEFIADILNQDAKN--------------------YHAWQHRQWVIQEFKL 215 (382)
T ss_dssp --------HHHH---HHHHHHHHHTCCTTHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHHTC
T ss_pred --------HHHH---HHHHHHHHccCHHHHHHHHHHHHHhCccC--------------------HHHHHHHHHHHHHcCC
Confidence 1111 12333466799999998888776433321 2456789999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ-VGDLEGA-----KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
+++|+..|+++++.+| .+..+|+.+|.++.. .|.+++| +.+|++++++.+++ ..+|.++|
T Consensus 216 ~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------------~~a~~~l~ 281 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------------ESAWNYLK 281 (382)
T ss_dssp CTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------------HHHHHHHH
Confidence 9999999999999999 999999999999999 5665788 59999999765543 66889999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHH-HHhCCCcchhHHHHH
Q 017532 264 LIYLVGK--DYVSAVREYEECIERDYNDIVAINNKALCLMYLR---------DLSDSIKVLENA-LERVPTVALNETLVV 331 (370)
Q Consensus 264 ~~~~~~g--~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g---------~~~~A~~~l~~a-l~~~p~~~~~~~~~~ 331 (370)
.++...| ++++|++.++++ +.+|+++.++..+|.++...| .+++|+++|+++ ++.+|.. ...+.
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r---~~~w~ 357 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR---KEYWR 357 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG---HHHHH
T ss_pred HHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh---HHHHH
Confidence 9999988 799999999998 999999999999999999985 369999999999 9999986 56666
Q ss_pred HHHHHHH
Q 017532 332 NLCSMYE 338 (370)
Q Consensus 332 nl~~lye 338 (370)
+++..+.
T Consensus 358 ~~~~~l~ 364 (382)
T 2h6f_A 358 YIGRSLQ 364 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=173.18 Aligned_cols=236 Identities=10% Similarity=0.026 Sum_probs=183.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH
Q 017532 70 LAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF 149 (370)
Q Consensus 70 ~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~ 149 (370)
+...+..+.+.|++++|...++++...++.. + ......+.+....|++++|+..+..++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD------------------A-EAWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC------------------H-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445889999999999999999996554211 1 11223455557789999999888877643
Q ss_pred HHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----------HHHHHHH
Q 017532 150 VREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV----------SKLGFIQ 219 (370)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----------~~lg~~~ 219 (370)
.+.. ..+++.+|.++...|++++|+..|+++++..| .+...+ ..+|.++
T Consensus 129 ~p~~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 129 QPNN--------------------LKALMALAVSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp CTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHCC------------------
T ss_pred CCCC--------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHH
Confidence 2211 24567899999999999999999999999988 544333 4459999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
...|++++|+.+|++++++.+.. .+ ..++.++|.++...|++++|+..|+++++.+|+++.+++++|.+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~-------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDM-------ID----PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSS-------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCc-------cC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999875541 12 45678899999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 300 LMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+...|++++|++.|+++++.+|+. ..++++++.+|....+ .+.....++......|+
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGF---IRSRYNLGISCINLGA--YREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcc
Confidence 999999999999999999999998 8899999999975433 56666666666554444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=159.65 Aligned_cols=228 Identities=14% Similarity=0.066 Sum_probs=180.8
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
.....++..|+|++|+..+.+++... .++ ..+...+.++..+|++++|...+.++..+.+... ++
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~ 74 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDI----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------AD 74 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc---------cc
Confidence 35667889999999999999987654 222 2344458899999999999999999865432100 00
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
...-.......+.+....|++++|+..+...+...+. +.++...|++++
T Consensus 75 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 75 ---YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------ADILTKLRNAEK 123 (258)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------HHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------------------hHHHHHHhHHHH
Confidence 0000112223455557788888888887776542211 234556688999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|+..+++++..+| .+..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++
T Consensus 124 a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~l~~~~~~~~~~ 189 (258)
T 3uq3_A 124 ELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------------ARGYSNRAAALAKLMSF 189 (258)
T ss_dssp HHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------------HHHHHHHHHHHHHhCCH
Confidence 9999999999999 889999999999999999999999999999764442 45688899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+
T Consensus 190 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 190 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=174.05 Aligned_cols=243 Identities=11% Similarity=0.026 Sum_probs=191.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCC-ccc
Q 017532 60 LTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSN-RQV 138 (370)
Q Consensus 60 ~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~-~~~ 138 (370)
..+|.+. ..+.+++.++.+.|++++|+..++++..+++... ..| ...+.+....|+ .++
T Consensus 91 ~~~p~~~-~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----------------~a~---~~~g~~l~~~g~d~~e 150 (382)
T 2h6f_A 91 IYSDKFR-DVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----------------TVW---HFRRVLLKSLQKDLHE 150 (382)
T ss_dssp CCCHHHH-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----------------HHH---HHHHHHHHHTTCCHHH
T ss_pred hCChhhH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----------------HHH---HHHHHHHHHcccCHHH
Confidence 4567653 3445567889999999999999999977664221 111 122334456786 888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017532 139 GLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFI 218 (370)
Q Consensus 139 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 218 (370)
|+..+..++...+.. ..+++++|.++...|++++|+..|+++++.+| .+..+|+.+|.+
T Consensus 151 Al~~~~~al~l~P~~--------------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~ 209 (382)
T 2h6f_A 151 EMNYITAIIEEQPKN--------------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHH
Confidence 888777766433321 24667899999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCCHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-GKDYVSA-----VREYEECIERDYNDIVA 292 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-~g~~~eA-----~~~~~~~l~~~p~~~~~ 292 (370)
+..+|++++|+.+|++++++.+++ ..+|.++|.++.. .|.+++| +.+|+++++++|++..+
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~~-------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a 276 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVRN-------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999765543 6789999999999 6665888 59999999999999999
Q ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC-------chhhHHHHHHHH-hhhCC
Q 017532 293 INNKALCLMYLR--DLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN-------HSDIKRTLSSWI-GRVAP 360 (370)
Q Consensus 293 ~~nla~~~~~~g--~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~-------~~~~~~~ll~~~-~~~~~ 360 (370)
|+++|.++...| ++++|++.++++ +.+|+. ..++..++.+|....+. ..++...+++.+ .+..|
T Consensus 277 ~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~---~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 277 WNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS---PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC---HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHccCccchHHHHHHHHHh-ccCCCC---HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 999999999988 699999999998 888887 78889999988754211 125566666665 34444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=170.39 Aligned_cols=319 Identities=13% Similarity=0.045 Sum_probs=215.2
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCC--CC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSS--GY 101 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~--~~ 101 (370)
.|.+..........+.+.|+|++|+..+.+++.. +|.+...+ ...+.++..+|++++|...++.+ .+++. ..
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 128 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI----KPDHSKAL-LRRASANESLGNFTDAMFDLSVL-SLNGDFDGA 128 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHH-C--------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchHHHH-HHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChH
Confidence 4556555666778889999999999999998654 57754444 44588999999999999999744 22221 10
Q ss_pred cccc----------------cCCCCCCCCC-----------------------------cccch---hHHHHHHHcCccc
Q 017532 102 QYET----------------YPHIYPNRTG-----------------------------SMVPF---SLRWLYAVLPIKL 133 (370)
Q Consensus 102 ~~~~----------------~~~~~~~~~~-----------------------------~~~~~---~~r~l~a~~~~~~ 133 (370)
.... .....++... ...+. ..+.+........
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 0000 0000000000 00000 1111111101111
Q ss_pred C-------CccchHHHHHHHHHHHHHH----------H---HH--HhhHhhHHhHHHHHHHH-----HHHHHHHHHHHHh
Q 017532 134 S-------NRQVGLDRFYELLDFVREK----------L---AR--KLAEKLEESVKSWKKRE-----IFVLNCLIGYHLS 186 (370)
Q Consensus 134 g-------~~~~al~~l~~ll~~~~~~----------~---~~--~~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~ 186 (370)
+ ++.+|+..+..++...+.. . .. ...+...++...+.... ..+++.+|.++..
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2 3344444444333221110 0 00 01122344555555443 4678899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.|++++|+..+++++...| .++.++..+|.++...|++++|+..|++++++.+.. ..++..+|.++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~la~~~ 354 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------------VYPYIQLACLL 354 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------SHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999765442 45678899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHhccC-
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA---LNETLVVNLCSMYELAYV- 342 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~~~nl~~lyel~~~- 342 (370)
...|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|+.. .....+++++.+|.....
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999987642 223445677777764311
Q ss_pred -------CchhhHHHHHHHHhhhCCCC
Q 017532 343 -------NHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 343 -------~~~~~~~~ll~~~~~~~~d~ 362 (370)
+..+.....++......|++
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 34567777777766666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-19 Score=169.70 Aligned_cols=314 Identities=11% Similarity=0.039 Sum_probs=219.8
Q ss_pred CChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccc-----
Q 017532 30 PDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYE----- 104 (370)
Q Consensus 30 ~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~----- 104 (370)
........+++.|+|++|+..+.+++.. +|.+... +...+.++.++|++++|...++++..+++......
T Consensus 41 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 41 FYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKV-LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 3445667888899999999999887654 4765433 34458889999999999999988866554221000
Q ss_pred --------------------------------------ccCCC------------CCCCCC-----cccchhHHHHHHHc
Q 017532 105 --------------------------------------TYPHI------------YPNRTG-----SMVPFSLRWLYAVL 129 (370)
Q Consensus 105 --------------------------------------~~~~~------------~~~~~~-----~~~~~~~r~l~a~~ 129 (370)
..+.. +..... ...........+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 00000 000000 00000111112221
Q ss_pred C---cccCCccchHHHHHHHHHHH--------------HHHHHH--------HhhHhhHHhHHHHHHHH-----HHHHHH
Q 017532 130 P---IKLSNRQVGLDRFYELLDFV--------------REKLAR--------KLAEKLEESVKSWKKRE-----IFVLNC 179 (370)
Q Consensus 130 ~---~~~g~~~~al~~l~~ll~~~--------------~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~ 179 (370)
. ...|++++|+..+..++... +..... ...+...++...+.... ..++..
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 275 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY 275 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHH
Confidence 1 24799999999998887632 111100 01223344555554433 567889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..|++++++.+.. ..++
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~ 341 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------------IFPY 341 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------------SHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------------HHHH
Confidence 99999999999999999999999999 888999999999999999999999999999754432 4567
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---hHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---NETLVVNLCSM 336 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~~~nl~~l 336 (370)
..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..++++++..|+... ....+++++.+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999998887511 01278888888
Q ss_pred HHhcc-CCchhhHHHHHHHHhhhCCCC
Q 017532 337 YELAY-VNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 337 yel~~-~~~~~~~~~ll~~~~~~~~d~ 362 (370)
|.... .+..+.....++......|++
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 86300 344667777777666665554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=159.43 Aligned_cols=248 Identities=15% Similarity=0.122 Sum_probs=190.7
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIY 110 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~ 110 (370)
.......++..|+|++|+..+.+++.. +|.+...+. ..+.++...|++++|...++++.... .+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~--------- 70 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYN-RRAVCYYELAKYDLAQKDIETYFSKV-NAT--------- 70 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHH-HHHHHHHHTTCHHHHHHHHHHHHTTS-CTT---------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcc-Cch---------
Confidence 345677889999999999999998654 466433343 34789999999999999999996621 110
Q ss_pred CCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCH
Q 017532 111 PNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 111 ~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (370)
...+ ......+.+....|++++|+..+..++...+.. ..++..+|.++...|++
T Consensus 71 -----~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 71 -----KAKS-ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--------------------LDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp -----TCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------------THHHHHHHHHHHHTTCH
T ss_pred -----hHHH-HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--------------------HHHHHHHHHHHHHccCH
Confidence 0011 112234555577899999998888776532211 14567899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++|+..++++++..| .++.++..+|......+++++|+.+|++++++.++. ...+..+|.++...|
T Consensus 125 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------------~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------------YIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------------hHHHHHHHHHHHHcC
Confidence 999999999999999 999999999955555679999999999999765442 456778999999999
Q ss_pred C---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 271 D---YVSAVREYEECIERD---YN-----DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 271 ~---~~eA~~~~~~~l~~~---p~-----~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+ +++|+..|+++++.. |+ ...++.++|.++...|++++|+++|+++++++|++ ..+.-.+..+
T Consensus 191 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~l~~~ 264 (272)
T 3u4t_A 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN---KKAIDGLKMK 264 (272)
T ss_dssp TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHC--
T ss_pred cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH---HHHHHHhhhh
Confidence 9 999999999999885 54 23688999999999999999999999999999987 5555554444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=151.95 Aligned_cols=163 Identities=13% Similarity=0.031 Sum_probs=144.3
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+.+....|++++|+..+...++..+.. ..+++.+|.++...|++++|+..+++++...|
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~--------------------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~- 70 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNN--------------------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT- 70 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-
Confidence 444467799999988888876443221 24567899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+..++..+|.++...++++.|...++++..+.+.. ..++..+|.++...|++++|++.|+++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999765442 5567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|.++.+++++|.++..+|++++|++.|+++++++|++
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9999999999999999999999999999999999863
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=150.68 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=125.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.||.++..+|++++|+..+++++...| .++..++.+|.+|.+.|++++|+++|++++++.|++ ..+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------------~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------------PKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHH
Confidence 467788889999999999999999998 888889999999999999999999999999765542 677
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV-LENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~-l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
+.++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|.+. ++++++++|++ ..+....+.++
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~---~~~~~l~~~ll 144 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS---PAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC---HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999987776 59999999997 66666666776
Q ss_pred H
Q 017532 338 E 338 (370)
Q Consensus 338 e 338 (370)
+
T Consensus 145 ~ 145 (150)
T 4ga2_A 145 D 145 (150)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-18 Score=148.93 Aligned_cols=231 Identities=15% Similarity=0.098 Sum_probs=186.0
Q ss_pred HHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHH
Q 017532 69 YLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLD 148 (370)
Q Consensus 69 ~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~ 148 (370)
.+...+.++...|++++|...++++..++ .. + ......+.+....|+.++|+..+..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~------------------~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 66 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KD------------------I-TYLNNRAAAEYEKGEYETAISTLNDAVE 66 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC------------------T-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc------------------H-HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445888999999999999999986543 11 0 1122345556788999999999888775
Q ss_pred HHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 017532 149 FVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGA 228 (370)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A 228 (370)
..+... .. + .....+++.+|.++...|++++|+..+++++...| . +.++...|++++|
T Consensus 67 ~~~~~~----~~--------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~--------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 67 QGREMR----AD--------Y-KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-T--------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHTT----CC--------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C--------HHHHHHHHHHHHH
T ss_pred hCcccc----cc--------h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-h--------hHHHHHHhHHHHH
Confidence 544321 00 0 01236778999999999999999999999999988 4 5678888999999
Q ss_pred HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH
Q 017532 229 KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 229 ~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
+..+++++. .+|.. ..++..+|.+++..|++++|+..|+++++.+|.++.+++++|.++...|++++
T Consensus 125 ~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 125 LKKAEAEAY------------VNPEK-AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp HHHHHHHHH------------CCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH------------cCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHH
Confidence 999999994 45655 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
|+..++++++.+|+. ...+++++.+|... +..+.....++...+..
T Consensus 192 A~~~~~~al~~~~~~---~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 192 AIADCNKAIEKDPNF---VRAYIRKATAQIAV--KEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHH---HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhC
Confidence 999999999999997 78899999999754 44666666666655444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=150.82 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|.++...|+|++|+..|+++++..|..+..+++.+|.++...|++++|+.+|++++++ +|+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------~p~~ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------------NYNL 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------TCSH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------------Ccch
Confidence 4677899999999999999999999999987456778888999999999999999999999964 3333
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--cch
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-------VAINNKALCLMYLRDLSDSIKVLENALERVPT--VAL 325 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-------~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~--~~~ 325 (370)
..++..+|.++...|++++|+..|+++++.+|+++ .+++++|.++...|++++|++.|+++++.+|+ +
T Consensus 76 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 152 (228)
T 4i17_A 76 -ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-- 152 (228)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH--
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc--
Confidence 67789999999999999999999999999999999 67999999999999999999999999999998 6
Q ss_pred hHHHHHHHHHHHHh
Q 017532 326 NETLVVNLCSMYEL 339 (370)
Q Consensus 326 ~~~~~~nl~~lyel 339 (370)
...+++++.+|..
T Consensus 153 -~~~~~~l~~~~~~ 165 (228)
T 4i17_A 153 -TDALYSLGVLFYN 165 (228)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 7888999988864
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=154.62 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 158 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------------ 158 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------------
Confidence 4456788899999999999999999999999 899999999999999999999999999999764432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|++ ......++
T Consensus 159 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~ 234 (243)
T 2q7f_A 159 -TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH---MLALHAKK 234 (243)
T ss_dssp -HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC---HHHHHHHT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch---HHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999987 66777766
Q ss_pred HHH
Q 017532 335 SMY 337 (370)
Q Consensus 335 ~ly 337 (370)
.+.
T Consensus 235 ~l~ 237 (243)
T 2q7f_A 235 LLG 237 (243)
T ss_dssp C--
T ss_pred HHH
Confidence 654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=163.12 Aligned_cols=252 Identities=12% Similarity=-0.050 Sum_probs=187.5
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccc
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYE 104 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~ 104 (370)
|.+..........+...|+|++|+..+.+++.. +|.+...+ ...+.++...|++++|...++++...++......
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 126 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVH-AALAVSHTNEHNANAALASLRAWLLSQPQYEQLG 126 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence 333333444567788999999999999998654 46653443 3458889999999999999999876553221100
Q ss_pred ccCCCCCCCCCcccc--hhHHHHHHH-cCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHH
Q 017532 105 TYPHIYPNRTGSMVP--FSLRWLYAV-LPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLI 181 (370)
Q Consensus 105 ~~~~~~~~~~~~~~~--~~~r~l~a~-~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 181 (370)
. ... ...+ .....+.+. +....|++++|+..+..++...+. ...++..+|
T Consensus 127 ~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------~~~~~~~la 179 (327)
T 3cv0_A 127 S------VNL-QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN--------------------DAQLHASLG 179 (327)
T ss_dssp --------------------------CCTTSHHHHHHHHHHHHHHHHHSTT--------------------CHHHHHHHH
T ss_pred H------HHh-HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC--------------------CHHHHHHHH
Confidence 0 000 0000 000011022 235556666666666555432211 124567899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
.++...|++++|+..++++++..| .++.++..+|.++...|++++|+.+|++++++.+.. ..++..
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~ 245 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-------------VRVMYN 245 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------HHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999764432 456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYN------------DIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~------------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+|.++...|++++|+..|++++..+|. +..++.++|.++...|++++|...++++++..|+
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999 7899999999999999999999999988877654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-18 Score=154.15 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=175.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
-..+.++..|+++.|+..++. .+|.+ ...+...+..+.+.+++++|.+.++.+..... .|+
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~-------~~~~~-~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~-----------~P~ 99 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP-------SSAPE-LQAVRMFAEYLASHSRRDAIVAELDREMSRSV-----------DVT 99 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT-------TSCHH-HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCC-----------CCS
T ss_pred HHHHHHHHCCCHHHHHHHhcc-------cCChh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccc-----------CCC
Confidence 357889999999999975543 13433 33333335678889999999999998742210 011
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
. .......+.+....|++++|+..+.. + .. ..++..+|.++..+|++++
T Consensus 100 ~------~~~~~~la~~~~~~g~~~~Al~~l~~-----~------------~~--------~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 100 N------TTFLLMAASIYFYDQNPDAALRTLHQ-----G------------DS--------LECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp C------HHHHHHHHHHHHHTTCHHHHHHHHTT-----C------------CS--------HHHHHHHHHHHHHTTCHHH
T ss_pred C------HHHHHHHHHHHHHCCCHHHHHHHHhC-----C------------CC--------HHHHHHHHHHHHHCCCHHH
Confidence 0 12244556666788999999987765 0 00 1455688999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLG--FIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
|+..++++++.+| ++.......+ .++...|++++|+..|+++++..+++ ..++.++|.++...|
T Consensus 149 A~~~l~~~~~~~p-~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~-------------~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 149 ARKELKKMQDQDE-DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-------------LLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCc-CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHcC
Confidence 9999999999999 7754443333 34445699999999999999764432 567889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhCCCc
Q 017532 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD-SIKVLENALERVPTV 323 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~-A~~~l~~al~~~p~~ 323 (370)
++++|+..|+++++.+|+++.+++|+|.++...|+.++ +.++++++++.+|++
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999987 568999999999986
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-18 Score=148.02 Aligned_cols=198 Identities=12% Similarity=0.069 Sum_probs=160.8
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++++|+..+..++...+.. ..++..+|.++...|++++|+..++++++..|
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKED--------------------AIPYINFANLLSSVNELERALAFYDKALELDS 88 (243)
T ss_dssp -------------CCTTHHHHHTTCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCccc--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3445577899999998888776422111 24567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.+..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+..|+++++.
T Consensus 89 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 89 -SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999765442 456788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+|.++.++.++|.++...|++++|+..++++++.+|+. ..++++++.+|... +..+.....++......|++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH---ADAFYNAGVTYAYK--ENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHCTTC
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHc--cCHHHHHHHHHHHHccCcch
Confidence 99999999999999999999999999999999999987 77899999999754 34677777777777777765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=146.85 Aligned_cols=201 Identities=11% Similarity=0.028 Sum_probs=170.6
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+.+....|++++|+..+..++...+.. ..+++.+|.++...|++++|+..++++++..|
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEIDPSS--------------------ADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCh--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4455567899999998888776432111 24567899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.+..++..+|.++...|++++|+.+|++++. . ...|.. ..++..+|.+++..|++++|+..|+++++.
T Consensus 103 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~-------~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 103 -RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ---D-------TLYPER-SRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---C-------TTCTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---C-------ccCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999984 0 123433 667888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
+|.+..++.++|.++...|++++|+..++++++..|.. ...+..++.+|... +..+....+++.+....|++.
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN---ARSLLLGIRLAKVF--EDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999999999999999987 77788888888743 447788888888877777753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=151.84 Aligned_cols=178 Identities=12% Similarity=0.046 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
...++.+|..++..|+|++|+..|+++++..| .+ +.+++.+|.++...|++++|+..|++++++.|++
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~-------- 85 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID-------- 85 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--------
Confidence 35678899999999999999999999999999 77 8899999999999999999999999999876653
Q ss_pred hHHHHHHHHHhHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCC
Q 017532 251 EVEFRNLVSRNKALIYLV--------GKDYVSAVREYEECIERDYNDIVAI-----------------NNKALCLMYLRD 305 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~--------~g~~~eA~~~~~~~l~~~p~~~~~~-----------------~nla~~~~~~g~ 305 (370)
|.. ..+++.+|.+++. .|++++|+..|+++++.+|++..+. +++|.++...|+
T Consensus 86 -~~~-~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 86 -PRV-PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp -TTH-HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -chh-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 222 5678899999999 9999999999999999999987655 889999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC--------CchhhHHHHHHHHhhhCCCC
Q 017532 306 LSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV--------NHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 306 ~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~--------~~~~~~~~ll~~~~~~~~d~ 362 (370)
+++|+..|+++++.+|+.......+++++.+|..... +..+++....+.+....|++
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999876567899999999874411 33466677777776666665
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-18 Score=158.19 Aligned_cols=269 Identities=12% Similarity=0.020 Sum_probs=158.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHH---HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH---LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~---~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+...|+|++|+..+++++... |.+. ...+...+.++...|++++|...++++..+....
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 80 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 80 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---------
Confidence 46778899999999999999987653 4332 2234445788999999999999998874331100
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
.+ ...........+.+....|++++|+..+...+...+..-.. .....++..+|.++...|+
T Consensus 81 -~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 81 -GD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------VGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred -cc---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHHHHHHHHcCC
Confidence 00 00001112234555678899999999998887665543100 0112445566666666666
Q ss_pred --------------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 190 --------------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 190 --------------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
+++|+..+++++.... .....++..+|.++...|++++|+.+|++++++.+..
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 220 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-- 220 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--
Confidence 6666666666654421 0122345566666666666666666666666655442
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
...+.. ..++.++|.++...|++++|+.+|++++...|.. ..++.++|.++...|++++|+..++++++
T Consensus 221 ----~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 221 ----GDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ----TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 112222 4556666666666666666666666666554433 45566666666666666666666666665
Q ss_pred hCCCc---chhHHHHHHHHHHHHh
Q 017532 319 RVPTV---ALNETLVVNLCSMYEL 339 (370)
Q Consensus 319 ~~p~~---~~~~~~~~nl~~lyel 339 (370)
..+.. .....++.+++.+|..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHH
Confidence 53321 1113345556665553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=162.18 Aligned_cols=283 Identities=11% Similarity=-0.006 Sum_probs=203.9
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHH---HHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHL---TYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~---~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+...|+|++|+..+++++... |.+.. ..+...+.++...|++++|...++++..+....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------- 119 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--------- 119 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------
Confidence 35566789999999999999987653 44322 234445788999999999999998885331000
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
.+.. ... ......+.+....|++++|+..+...+......-. ......++..+|.++...|+
T Consensus 120 -~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 120 -NDRL--GEA-KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--------------RLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp -TCHH--HHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -cCch--HHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--------------hHHHHHHHHHHHHHHHHcCc
Confidence 0000 011 11223455567889999999999888765543210 01123567789999999999
Q ss_pred -----------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 190 -----------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 190 -----------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
+++|+..+++++...+ .....++..+|.++...|++++|+.+|++++++.+..
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 256 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF----- 256 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-----
Confidence 9999999999877542 1234577889999999999999999999999887652
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.++.....++.++|.++...|++++|+.+|++++...|.. ..++.++|.++...|++++|+.++++++...+
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 --GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2233336688899999999999999999999999887643 67889999999999999999999999998865
Q ss_pred Cc---chhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 322 TV---ALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 322 ~~---~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
.. .....++++++.+|... +..++...+++..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a 369 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAI--GGHERALKYAEQH 369 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 42 12245778888888754 3456666665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=143.21 Aligned_cols=201 Identities=8% Similarity=-0.040 Sum_probs=167.2
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+.+....|++++|+..+..++...+.. ..++..+|.++...|++++|+..+++++...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSDPKN--------------------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCccc--------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 3445577899999988887765432211 24567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 206 GLDPILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
.+..++..+|.++... |++++|+.+|+++++ .+ ..|.. ..++..+|.++...|++++|+..|+++++
T Consensus 74 -~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 74 -DSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP---------TYPTP-YIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST---------TCSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc---------CCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999995 11 23333 56788899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 285 RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP-TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 285 ~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
.+|.++.++.++|.++...|++++|+..++++++..| .. ...+..+..++.. .+..++...+.+.+....|++.
T Consensus 142 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ---ADDLLLGWKIAKA--LGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCH
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHh--cCcHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999 76 5566677777664 3446778888888777777653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=147.13 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=164.1
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
+|.+....+...+.++...|++++|...++++...++.. + ......+.+....|++++|+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------------------~-~~~~~la~~~~~~~~~~~A~~ 92 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------------------A-DAHAALAVVFQTEMEPKLADE 92 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh------------------H-HHHHHHHHHHHHcCCHHHHHH
Confidence 454433344445677777888888888877775432110 0 112223444466777777777
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHH
Q 017532 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIG--RGNGLDPILVSKLGFIQ 219 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~lg~~~ 219 (370)
.+..++...+.. ..+++.+|.++...|++++|+.++++++. ..| .+..++..+|.++
T Consensus 93 ~~~~a~~~~~~~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~la~~~ 151 (252)
T 2ho1_A 93 EYRKALASDSRN--------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP-ERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHH
T ss_pred HHHHHHHHCcCc--------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc-ccHHHHHHHHHHH
Confidence 776665332110 14556888999999999999999999999 777 7888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+..|+++++.+|.+..++..++.+
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 218 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLNRNQ-------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCccc-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 99999999999999999764432 45678899999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 300 LMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+...|++++|++.++++++.+|+.
T Consensus 219 ~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 219 AKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHccCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999986
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=149.05 Aligned_cols=182 Identities=8% Similarity=0.010 Sum_probs=153.9
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHH-HHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVR-EKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
.+.+....|++.+|+..+..++...+ .. ..+++.+|.++...|++++|+..++++++.+
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQD--------------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCC--------------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 34455778999999998888765432 10 1345679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 205 NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 205 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
| .+..++..+|.++..+|++++|+..|++++++.+++. ...... ..++.++|.++...|++++|++.|+++++
T Consensus 73 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 73 Y-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-----TIEKLY-AIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp C-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred c-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HHHHHH-HHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998766531 111222 57789999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 285 RDYN--DIVAINNKALCLMYLRDL---------------------------SDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 285 ~~p~--~~~~~~nla~~~~~~g~~---------------------------~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.+|+ ++.+++++|.++...|+. ++|+.+|+++++++|++ ..+...++.
T Consensus 146 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~ 222 (228)
T 4i17_A 146 VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR---TEIKQMQDQ 222 (228)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHH
Confidence 9999 999999999999999998 99999999999999987 666666666
Q ss_pred HH
Q 017532 336 MY 337 (370)
Q Consensus 336 ly 337 (370)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=155.24 Aligned_cols=285 Identities=13% Similarity=0.021 Sum_probs=209.0
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHH---HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH---LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~---~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+...|+|++|+..+++++... |.+. ...+...+.++...|++++|...++++..+.. ..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~--- 76 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------TI--- 76 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HH---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------cc---
Confidence 35677899999999999999987653 4332 23344457889999999999999888743311 00
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
++.. ... ......+.+....|++++|+..+...+...+..-. ......++..+|.++...|+
T Consensus 77 -~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 77 -GDQL--GEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--------------KVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp -TCHH--HHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -cccH--HHH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------------chHHHHHHHHHHHHHHHcCc
Confidence 0000 011 11223455567889999999988887765543210 01124577789999999999
Q ss_pred --------------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 190 --------------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 190 --------------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
+++|+..+++++...+ .....++..+|.++...|++++|+.+|++++++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 216 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-- 216 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--
Confidence 9999999999876532 0234578899999999999999999999999887652
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.++.....++.++|.++...|++++|+..|++++...+.. ..++.++|.++...|++++|+..++++++
T Consensus 217 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 217 -----GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2233337789999999999999999999999999886654 67899999999999999999999999998
Q ss_pred hCCCc---chhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 319 RVPTV---ALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 319 ~~p~~---~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
..+.. .....++.+++.+|.... ..++...+++....
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALG--NHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence 86542 122447788999988543 36666666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=158.35 Aligned_cols=301 Identities=8% Similarity=-0.035 Sum_probs=200.9
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhcc-----ccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQS-----LLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~-----~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
........|++++|++.+.+++... ...+|.. ...+...++++..+|++++|...++++..+....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~-~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~-------- 127 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS-LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF-------- 127 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc--------
Confidence 3455678899999999999975431 1224543 3334445899999999999999998875442100
Q ss_pred CCCCCCCcccchhH-HHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH-----------HhhHhhHHhHHHHHHHH---
Q 017532 109 IYPNRTGSMVPFSL-RWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR-----------KLAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 109 ~~~~~~~~~~~~~~-r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--- 173 (370)
.+......+... ....+.+....++.++|++.|..++...+..... ...+...++++.+++.+
T Consensus 128 --~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 --SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp --CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred --ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 000000111111 1112233344567889999998877543221110 01111223444444433
Q ss_pred ---HHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 ---IFVLNCLIGYHL----SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 ---~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
..++..++..+. ..|++++|+..+++++..+| .+..++..+|.++...|++++|+..|++++++.|+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---- 280 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN---- 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh----
Confidence 445556665444 45788999999999999999 999999999999999999999999999999765542
Q ss_pred CccchHHHHHHHHHhHHHHHHHc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVG-------------------KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS 307 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~-------------------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~ 307 (370)
..++.++|.+|..+ +.+++|+..|+++++.+|.+..+++++|.++...|+++
T Consensus 281 ---------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 281 ---------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 55677788877543 45788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCC
Q 017532 308 DSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 308 ~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~ 360 (370)
+|++.|+++++.+|++.....+.++++.+.... .+..+++.....+.-...|
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ-MKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCc
Confidence 999999999999987644445667777665432 3334444444444333333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=152.57 Aligned_cols=239 Identities=12% Similarity=0.019 Sum_probs=189.3
Q ss_pred HHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH
Q 017532 72 YNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR 151 (370)
Q Consensus 72 ~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~ 151 (370)
..+.++...|++++|...++++...++... . . ....+.+....|++++|+..+..++. ..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~--~-~~~l~~~~~~~~~~~~A~~~~~~a~~-~~ 67 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSP----------------Y--I-YNRRAVCYYELAKYDLAQKDIETYFS-KV 67 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----------------T--T-HHHHHHHHHHTTCHHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----------------H--H-HHHHHHHHHHHhhHHHHHHHHHHHHh-cc
Confidence 357889999999999999999976553111 0 1 12234455778999999988877654 11
Q ss_pred HHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017532 152 EKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKS 231 (370)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 231 (370)
. ... ....++..+|.++...|++++|+..|+++++.+| .++.++..+|.++...|++++|+.+
T Consensus 68 ~------~~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 68 N------ATK----------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp C------TTT----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C------chh----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHH
Confidence 0 000 0124567899999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC---HHH
Q 017532 232 FNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD---LSD 308 (370)
Q Consensus 232 ~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~---~~~ 308 (370)
|++++++.+ .. ..++.++|...+..+++++|++.|+++++.+|++..++.++|.++...|+ +++
T Consensus 131 ~~~al~~~~------------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 131 MEKQIRPTT------------TD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGL 197 (272)
T ss_dssp HGGGCCSSC------------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCT
T ss_pred HHHHhhcCC------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHH
Confidence 999995422 22 56788899555566799999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhC---CCcc--hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 309 SIKVLENALERV---PTVA--LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 309 A~~~l~~al~~~---p~~~--~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
|+..++++++.. |+.. ....+.++++.+|... +..+++...+++.-...|++
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN--RDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCccH
Confidence 999999999986 4421 1136788899999754 44788888888887777775
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=133.30 Aligned_cols=120 Identities=20% Similarity=0.198 Sum_probs=100.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHH
Q 017532 200 SIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREY 279 (370)
Q Consensus 200 ~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~ 279 (370)
+..++| .....+..+|..+++.|++++|+++|++++++.|.. ..++.++|.++..+|++++|+..|
T Consensus 5 ~a~inP-~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~~~~~~~~~~~A~~~~ 70 (126)
T 4gco_A 5 LAYINP-ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------------AILYSNRAACLTKLMEFQRALDDC 70 (126)
T ss_dssp --CCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHhhHHHhhccHHHHHHHH
Confidence 445677 777888889999999999999999999998764442 567888999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 280 EECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 280 ~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+++++++|+++.+++++|.++..+|++++|++.|+++++++|++ ..+..+|+.+
T Consensus 71 ~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~~ 124 (126)
T 4gco_A 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN---EEAREGVRNC 124 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987 6666666654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=161.87 Aligned_cols=177 Identities=11% Similarity=-0.008 Sum_probs=155.1
Q ss_pred HHHHcCcccCCc-cchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 125 LYAVLPIKLSNR-QVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 125 l~a~~~~~~g~~-~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
..+.+....|++ ++|+..+..++...+.. ..+++.+|.++...|++++|+..|+++++.
T Consensus 107 ~lg~~~~~~g~~~~~A~~~~~~al~~~p~~--------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 107 LKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhhCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445666788999 99998888876433211 245678999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-----
Q 017532 204 GNGLDPILVSKLGFIQMQV---------GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG----- 269 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~----- 269 (370)
+| + ..++..+|.++... |++++|+.+|++++++.++. ..++.++|.++...
T Consensus 167 ~p-~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 167 CK-N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------------GRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp CC-C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHHHHTT
T ss_pred CC-C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHHHHhhc
Confidence 99 6 78999999999999 99999999999999775542 56789999999999
Q ss_pred ---CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 270 ---KDYVSAVREYEECIERDY---NDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 270 ---g~~~eA~~~~~~~l~~~p---~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
|++++|+..|+++++++| +++.+++++|.++...|++++|++.|+++++++|++ ...+.+++.++..
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~a~~~l~~~~~~ 304 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW---PEPQQREQQLLEF 304 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999998 6777777777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=174.38 Aligned_cols=162 Identities=16% Similarity=0.098 Sum_probs=145.0
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+.++...|+.++|+..+.++++..+.. ..+++++|.+|..+|++++|+..|+++++.+|
T Consensus 16 G~~~~~~G~~~eAi~~~~kAl~l~P~~--------------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P- 74 (723)
T 4gyw_A 16 ANIKREQGNIEEAVRLYRKALEVFPEF--------------------AAAHSNLASVLQQQGKLQEALMHYKEAIRISP- 74 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 445577899999988888776433211 25678999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
+++.+++++|.++..+|++++|+++|++++++.++. ..++.++|.++..+|++++|++.|+++++++
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------------ADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999775542 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
|+++.+++++|.++...|++++|++.+++++++.|+
T Consensus 142 P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999999998664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-17 Score=134.88 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|+++++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 75 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN----------- 75 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------
Confidence 35677899999999999999999999999999 899999999999999999999999999999764432
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
..++..+|.++...|++++|+..|++++..+|.++.++.++|.++...|++++|++.++++++..|+. ..+.+++
T Consensus 76 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 150 (186)
T 3as5_A 76 --VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---GKVHRAI 150 (186)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---hHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999987 7888999
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+.+|... +..+.....++......|++
T Consensus 151 a~~~~~~--~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 151 AFSYEQM--GRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHc--CCHHHHHHHHHHHHHcCCCc
Confidence 9998753 44677777776665544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=141.72 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
.+-..+++++..+| .+..+++.+|.++.+.|++++|+..|++++.+.|.+ ..+|.++|.++...|+
T Consensus 20 ~~~~~l~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-------------~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 20 NSGATLKDINAIPD-DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-------------VDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HTSCCTGGGCCSCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTC
T ss_pred HCCCCHHHHhCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHHcc
Confidence 34466788889999 999999999999999999999999999999765542 6679999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+.
T Consensus 86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999975
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-17 Score=141.94 Aligned_cols=178 Identities=10% Similarity=0.076 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..++.+|..++..|+|++|+..|+++++..| .+ ..+++.+|.++...|++++|+..|+++++..|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--------- 74 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------
Confidence 4677899999999999999999999999988 54 4789999999999999999999999999876653
Q ss_pred HHHHHHHHHhHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHH
Q 017532 252 VEFRNLVSRNKALIYLV------------------GKDYVSAVREYEECIERDYNDIVAI-----------------NNK 296 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~------------------~g~~~eA~~~~~~~l~~~p~~~~~~-----------------~nl 296 (370)
+.. ..+++.+|.+++. .|++++|+..|+++++.+|+++.+. ..+
T Consensus 75 ~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 75 PNI-DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp TTH-HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcH-HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 3567788888876 6799999999999999999987554 578
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 297 ALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 297 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
|.++...|++++|+..|+++++..|+......++++++.+|... +..+.....++.+...+|++.+.
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~--g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM--QMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCchhh
Confidence 99999999999999999999999998755567899999999854 44788888888888888887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-17 Score=137.77 Aligned_cols=208 Identities=8% Similarity=-0.027 Sum_probs=164.4
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
+|.+... +...+.++...|++++|...++++...++.. + ......+.+....|+.++|+.
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~-~~~~~l~~~~~~~~~~~~A~~ 63 (225)
T 2vq2_A 4 ANQVSNI-KTQLAMEYMRGQDYRQATASIEDALKSDPKN------------------E-LAWLVRAEIYQYLKVNDKAQE 63 (225)
T ss_dssp CCHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------------------h-HHHHHHHHHHHHcCChHHHHH
Confidence 4554333 3344778888899999998888875443211 0 112223444567788888887
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHH
Q 017532 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS-KEYNVCFDLMNESIG--RGNGLDPILVSKLGFI 218 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~--~~~~~~~~~~~~lg~~ 218 (370)
.+..++...+.. ..++..+|.++... |++++|+..++++++ ..| .+..++..+|.+
T Consensus 64 ~~~~a~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~ 122 (225)
T 2vq2_A 64 SFRQALSIKPDS--------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP-TPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHCTTC--------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS-CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC--------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc-chHHHHHHHHHH
Confidence 777665432110 13556889999999 999999999999999 555 667899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY-NDIVAINNKA 297 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p-~~~~~~~nla 297 (370)
+...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+..|++++..+| .+..++..++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQF-------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999764432 45678899999999999999999999999999 9999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.++...|+.++|..+++.+.+.+|++
T Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 190 KIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999986
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=140.82 Aligned_cols=129 Identities=7% Similarity=-0.035 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSK----------------LGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..++..|..++..|++++|+..|+++++.+| +++.+++. +|.++...|++++|+..|++++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999 88999998 999999999999999999999976
Q ss_pred hhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Q 017532 239 LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD--LSDSIKVLENA 316 (370)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~--~~~A~~~l~~a 316 (370)
.|+. ..++.++|.+++..|++++|+..|+++++++|+++.+++++|.++...|+ ...+...+.++
T Consensus 84 ~p~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 84 APNN-------------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp CTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5542 66789999999999999999999999999999999999999988865543 33444455444
Q ss_pred H
Q 017532 317 L 317 (370)
Q Consensus 317 l 317 (370)
+
T Consensus 151 ~ 151 (208)
T 3urz_A 151 S 151 (208)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=147.65 Aligned_cols=187 Identities=14% Similarity=0.109 Sum_probs=143.6
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~- 208 (370)
...|++++|++.+...+...+.. +.. ...+.++.++|.+|...|++++|+..|++++.+.+. .+
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~------~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKA------GNE--------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHT------TCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHh------CCH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45699999999988877554321 000 012357789999999999999999999999988761 12
Q ss_pred ---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 209 ---PILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
..++..+|.+|... |++++|+.+|++++++.+.. .++.....++.++|.++..+|++++|+.+|+++++
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-------QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45788999999996 99999999999999987753 12222256788999999999999999999999999
Q ss_pred hCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH--HHHHHHHHHHH
Q 017532 285 RDYNDIV-------AINNKALCLMYLRDLSDSIKVLENALERVPTVALNE--TLVVNLCSMYE 338 (370)
Q Consensus 285 ~~p~~~~-------~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~~~nl~~lye 338 (370)
..|++.. +++++|.++..+|++++|+..|+++++++|++.... ..+.++...|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 9987653 689999999999999999999999999999863211 23455666665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=158.45 Aligned_cols=169 Identities=12% Similarity=0.016 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 174 IFVLNCLIGYHLSSKEY-NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..+++.+|.++...|+| ++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|++++++ +|
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------~p 168 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH------------CK 168 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------------CC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CC
Confidence 46788999999999999 999999999999999 99999999999999999999999999999954 23
Q ss_pred HHHHHHHHhHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHHH
Q 017532 253 EFRNLVSRNKALIYLVG---------KDYVSAVREYEECIERDYNDIVAINNKALCLMYL--------RDLSDSIKVLEN 315 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~---------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~--------g~~~~A~~~l~~ 315 (370)
+ ..++.++|.++... |++++|+..|+++++++|+++.+++++|.++... |++++|++.|++
T Consensus 169 ~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 169 N--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp C--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 3 35788899999999 9999999999999999999999999999999999 999999999999
Q ss_pred HHHhCC---CcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 316 ALERVP---TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 316 al~~~p---~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+++++| +. ..++++++.+|... +..+++...++...+..|++
T Consensus 247 al~~~p~~~~~---~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 247 AEKVDRKASSN---PDLHLNRATLHKYE--ESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHCGGGGGC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCcccC---HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC
Confidence 999999 66 88999999999854 44778888887777777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=155.66 Aligned_cols=282 Identities=12% Similarity=-0.009 Sum_probs=194.8
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.....+...|+|++|+..+.+++..... .++......+...+.++..+|++++|...++++..+.+.. +
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~ 121 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----------N 121 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------T
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----------c
Confidence 3556788999999999999987543211 1122223334445788999999999999998885432100 0
Q ss_pred CCCCcccchhHHHHHHHcCcccCC-------------ccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSN-------------RQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~-------------~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
+. .... ......+.+....|+ +.++...+.+.+..+...+....... .......++.
T Consensus 122 ~~--~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~ 191 (406)
T 3sf4_A 122 DK--VGEA-RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-------DRAAQGRAFG 191 (406)
T ss_dssp CH--HHHH-HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHH
T ss_pred cc--cchH-HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------CcHHHHHHHH
Confidence 00 0011 111123344455566 33444444444433333322111000 0111246778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.+|.++...|++++|+..++++++..+ .. ..++..+|.++...|++++|+.+|++++++.+.. . ++
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~-~~ 263 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------K-DR 263 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------T-CH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC------c-Cc
Confidence 999999999999999999999998765 22 2378999999999999999999999999887763 2 23
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTV--- 323 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~--- 323 (370)
.....++.++|.++...|++++|+.+|+++++..+.. ..++.++|.++...|++++|+..++++++..+..
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 343 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3337788999999999999999999999999885433 6789999999999999999999999999885432
Q ss_pred chhHHHHHHHHHHHHhccC
Q 017532 324 ALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 324 ~~~~~~~~nl~~lyel~~~ 342 (370)
.....+..+++.+|.....
T Consensus 344 ~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 344 SGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHhhH
Confidence 2235677888888875544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=128.53 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..+.++|..+++.|+|++|+..|+++++.+| .++.++..+|.++..+|++++|+..|++++++.++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 80 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----------- 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-----------
Confidence 45677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
..++.++|.++..+|++++|++.|+++++++|++..++.+++.|+
T Consensus 81 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 81 --IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 677899999999999999999999999999999999999998874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=149.20 Aligned_cols=259 Identities=8% Similarity=-0.030 Sum_probs=177.1
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccC-CchHHHHHHHH-HHHHHhhhcCHHHHH-----------HHhhhcC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLT-QPHHHLTYLAY-NTLALMKLRRFDEAQ-----------QELDSLE 94 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~-~P~~~~~~~~~-~~~al~~l~~~~~A~-----------~~~~~~~ 94 (370)
|......-...++++++++|..+.+.+....... ...+...++.+ .....+-++.++.+. ..++.+.
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 3344456678899999999999998875432111 12222333222 111222223333333 3333321
Q ss_pred CCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHH
Q 017532 95 DFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREI 174 (370)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
.. +........+....+.+......|++++|+..+...+......- + ....+
T Consensus 92 ~~--------------~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~---------~~~~a 143 (383)
T 3ulq_A 92 KK--------------QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK-----D---------RIEKA 143 (383)
T ss_dssp HH--------------THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----C---------HHHHH
T ss_pred hc--------------CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC-----C---------HHHHH
Confidence 10 00000111112223345555778999999988887764322110 0 00124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG------LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
.+++.+|.++...|++++|+..++++++..+. ....++..+|.++...|++++|+.+|++++++.+..
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 217 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------ 217 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------
Confidence 67789999999999999999999999987541 123577899999999999999999999999987763
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE-----RD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~-----~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
...+.. ..++.++|.++...|++++|+.+|+++++ .+ |..+.+++++|.++...|++++|+..++++++..+
T Consensus 218 ~~~~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 218 KQPQLM-GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 223333 78899999999999999999999999999 46 77889999999999999999999999999998743
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=168.49 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| ++..+++.+|.++...|++++|+..|++++++.++.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------------ 500 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------------ 500 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------------
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------
Confidence 5677899999999999999999999999999 999999999999999999999999999999875553
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++.++|.++...|++++ +..|+++++++|++..+++++|.++...|++++|++.|+++++++|++ ..++++++
T Consensus 501 -~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~~~ 575 (681)
T 2pzi_A 501 -LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF---TTARLTSA 575 (681)
T ss_dssp -SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH---HHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc---HHHHHHHH
Confidence 5678899999999999999 999999999999999999999999999999999999999999999987 78889999
Q ss_pred HHHH
Q 017532 335 SMYE 338 (370)
Q Consensus 335 ~lye 338 (370)
.+|.
T Consensus 576 ~~~~ 579 (681)
T 2pzi_A 576 VTLL 579 (681)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 9874
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=140.96 Aligned_cols=232 Identities=13% Similarity=0.077 Sum_probs=178.8
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh----hcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK----LRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~----l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
......+...|++++|+..+.++.. |.+...++. .+..+.. .+++++|...+++...++.+.
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~-lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~------- 75 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFN-LGVLYYQGQGVEKNLKKAASFYAKACDLNYSN------- 75 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHH-HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHH-HHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHH-------
Confidence 4456677889999999999999865 222233333 4777888 999999999999885543111
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcc----cCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIK----LSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~----~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
.+ ...+.+... .++.++|+..+...+.. . ...+++.+|.+
T Consensus 76 -------------a~-~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---------------~~~a~~~lg~~ 119 (273)
T 1ouv_A 76 -------------GC-HLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---------------YAEGCASLGGI 119 (273)
T ss_dssp -------------HH-HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---------------CHHHHHHHHHH
T ss_pred -------------HH-HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---------------CccHHHHHHHH
Confidence 11 112333344 78888888777665431 0 12456789999
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 184 HLS----SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 184 ~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+.+|+++++. .+
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----------~~---- 181 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----------KD---- 181 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------TC----
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------CC----
Confidence 999 999999999999999865 47888999999999 99999999999999853 12
Q ss_pred HHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhH
Q 017532 256 NLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 256 ~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~ 327 (370)
..++.++|.++.. .+++++|+.+|+++++.+| +.+++++|.++.. .+++++|++.|+++++.+|+
T Consensus 182 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----- 254 (273)
T 1ouv_A 182 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK----- 254 (273)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH-----
Confidence 4567789999999 9999999999999999866 8899999999999 99999999999999999884
Q ss_pred HHHHHHHHHHH
Q 017532 328 TLVVNLCSMYE 338 (370)
Q Consensus 328 ~~~~nl~~lye 338 (370)
....++..+..
T Consensus 255 ~a~~~l~~~~~ 265 (273)
T 1ouv_A 255 GACDILKQLKI 265 (273)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHHHH
Confidence 45555555543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-16 Score=127.26 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+.+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|+++++..+.. ..
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~ 111 (186)
T 3as5_A 46 LHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------------FN 111 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------------HH
Confidence 4667788889999999999999999999 999999999999999999999999999999764432 45
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++..+|.++...|++++|+..|++++..+|.++.++.++|.++...|++++|+..++++++.+|++
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 678899999999999999999999999999999999999999999999999999999999998876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-17 Score=142.88 Aligned_cols=228 Identities=11% Similarity=-0.004 Sum_probs=175.9
Q ss_pred HcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccc
Q 017532 40 TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVP 119 (370)
Q Consensus 40 ~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (370)
..|+|++|+..+++++......+|.+ ...+...+.++...|++++|...++++..+++.. +
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~ 77 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDER-AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------------------P 77 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------------------H
T ss_pred ccchHHHHHHHHHHHHhcccccCchh-HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------------------H
Confidence 35899999999999876532223443 3344455889999999999999999986554211 1
Q ss_pred hhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017532 120 FSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNE 199 (370)
Q Consensus 120 ~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 199 (370)
......+.+....|++++|+..+..++...+.. ..+++.+|.++...|++++|+..+++
T Consensus 78 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 78 -EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------------NYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--------------------cHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 112234555677899999998888776432211 24667899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHH
Q 017532 200 SIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREY 279 (370)
Q Consensus 200 ~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~ 279 (370)
+++..| .+......++ +....|++++|+..|++++...+.. .. ....+.++...++.++|+..+
T Consensus 137 a~~~~~-~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 137 FYQDDP-NDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKE-------------QW-GWNIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HHHHCT-TCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCC-------------ST-HHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcc-------------hH-HHHHHHHHHHhcCHHHHHHHH
Confidence 999999 8876666555 4466799999999999999765442 11 133677888999999999999
Q ss_pred HHHHhhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 280 EECIERDYN----DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 280 ~~~l~~~p~----~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++++..+|. ++.++.++|.++...|++++|+..|+++++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 999988764 37899999999999999999999999999999975
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=143.46 Aligned_cols=231 Identities=13% Similarity=0.082 Sum_probs=166.8
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
+|.. ...+...+.++...|++++|...++++..+... . .+......+ ......+.+....|++++|+.
T Consensus 23 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~-----~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 90 (311)
T 3nf1_A 23 IPAR-LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-----T-----SGHDHPDVA-TMLNILALVYRDQNKYKDAAN 90 (311)
T ss_dssp SCHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----H-----HCSSSHHHH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred chHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----H-----cCCCCHHHH-HHHHHHHHHHHHCCCHHHHHH
Confidence 4543 333344577888889999999888887542100 0 000000011 112234555577899999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHH
Q 017532 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG--------NGLDPILVS 213 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~ 213 (370)
.+...+........... .....++..+|.++...|++++|+..++++++.. + ....++.
T Consensus 91 ~~~~al~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 157 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDH------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-DVAKQLN 157 (311)
T ss_dssp HHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHH
Confidence 98888766544321110 0123567899999999999999999999999874 3 4456789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--------
Q 017532 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-------- 285 (370)
Q Consensus 214 ~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-------- 285 (370)
.+|.++...|++++|+.+|++++++...... ...|.. ..++..+|.++...|++++|+..|+++++.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLG----PDDPNV-AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC----TTCHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC----CCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999987554211 225555 778899999999999999999999999974
Q ss_pred -----------------------------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 286 -----------------------------------------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 286 -----------------------------------------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+|....++.++|.++...|++++|+++|++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3556678888999999999999999999998888764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=147.49 Aligned_cols=253 Identities=9% Similarity=-0.015 Sum_probs=188.0
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
....+...|+|++|+..+.++...... .++......+...+.++..+|++++|...+.+...+.... ++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----------~~ 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH----------EA 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC----------ST
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------cc
Confidence 455678899999999999998654221 1222223334445888999999999999999885432100 00
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
.. ...... ....+.+....|++++|+..+...+...+..-. ......+++++|.++...|++++
T Consensus 179 ~~-~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 179 YN-IRLLQC-HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------------PQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp TH-HHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ch-HHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHHHHHCCCHHH
Confidence 00 001111 222455567889999999999888766553310 01124678899999999999999
Q ss_pred HHHHHHHHHh-----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 193 CFDLMNESIG-----RG-NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 193 A~~~~~~~l~-----~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
|+..++++++ .+ | ....++..+|.++...|++++|+.+|++++++.+. ..++.. ...+..+|.++
T Consensus 243 A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~-~~~~~~l~~~~ 313 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILP-SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK-------AGDVIY-LSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HTCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------cCCHHH-HHHHHHHHHHH
Confidence 9999999998 45 5 66788999999999999999999999999988765 234544 23366799999
Q ss_pred HHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 267 LVGKD---YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 267 ~~~g~---~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
...|+ +.+|+..+++. ...|....++.++|.++...|++++|+.+++++++...+
T Consensus 314 ~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred hCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999 88888888887 334555678999999999999999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=145.44 Aligned_cols=263 Identities=11% Similarity=-0.010 Sum_probs=179.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.....+...|+|++|+..+.++...... .++......+...+.++...|++++|...+.+...+.+.. +
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~ 117 (338)
T 3ro2_A 48 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----------N 117 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----------c
Confidence 4566778899999999999987543211 1122223334445778999999999999998875432100 0
Q ss_pred CCCCcccchhHHHHHHHcCcccCC-------------ccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSN-------------RQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~-------------~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
+. ...... ....+.+....|+ +.++...+.+.+..+...+....... . ......++.
T Consensus 118 ~~--~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~--~-----~~~~~~~~~ 187 (338)
T 3ro2_A 118 DK--VGEARA-LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG--D-----RAAQGRAFG 187 (338)
T ss_dssp CH--HHHHHH-HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT--C-----HHHHHHHHH
T ss_pred Cc--hHHHHH-HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC--C-----HHHHHHHHH
Confidence 00 001111 1123334455566 33444444444433333322111000 0 111246778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNG-L----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~-~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+|.++...|++++|+..++++++..+. . ...++..+|.++...|++++|+.+|++++.+.+.. .++.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~ 260 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-------KDRA 260 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------TCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-------cchh
Confidence 9999999999999999999999877551 1 12478999999999999999999999999887763 2333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
....++..+|.++...|++++|+..|++++...+.. ..++.++|.++...|++++|+.++++++++.++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 337788999999999999999999999999875432 468899999999999999999999999998775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=141.08 Aligned_cols=188 Identities=13% Similarity=0.053 Sum_probs=148.1
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++++|+..+..++...+... ....+++.+|.++...|+|++|+..|+++++..|
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHE-----------------WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ 83 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSCST-----------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCc-----------------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence 34445778999999988887764322110 0125678999999999999999999999999988
Q ss_pred CCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhhcCCccCCccchHHH----------HHHHHHhHHH
Q 017532 206 GLD---PILVSKLGFIQMQ--------VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF----------RNLVSRNKAL 264 (370)
Q Consensus 206 ~~~---~~~~~~lg~~~~~--------~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~----------~~~~~~~~g~ 264 (370)
.+ +.+++.+|.++.. .|++++|+..|+++++..|++. ..... ....++.+|.
T Consensus 84 -~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 84 -IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE------LVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp -TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 5688999999999 9999999999999998876641 11100 0222378999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYN---DIVAINNKALCLMYL----------RDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~---~~~~~~nla~~~~~~----------g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
+++..|++++|+..|+++++.+|+ .+.+++++|.++..+ |++++|+..|+++++.+|++........
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 236 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEE 236 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 999999999999999999999998 567999999999977 9999999999999999998744344444
Q ss_pred HHHHHH
Q 017532 332 NLCSMY 337 (370)
Q Consensus 332 nl~~ly 337 (370)
.+..++
T Consensus 237 ~l~~~~ 242 (261)
T 3qky_A 237 LYTRAR 242 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-16 Score=137.78 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=142.8
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG------ 204 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------ 204 (370)
...|++++|+..+.+.+..+......... ....+++.+|.++...|++++|+..+++++...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHP------------DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSH------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence 56799999999999988777655421110 123677899999999999999999999999763
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 205 --NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 205 --~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
+ ....++..+|.++...|++++|+.+|++++++..... ...+|.. ..++.++|.++...|++++|+.+|+++
T Consensus 80 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 80 DHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL----GKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp TCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc----CCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 4557889999999999999999999999998754321 0224666 788999999999999999999999999
Q ss_pred Hhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 283 IER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 283 l~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
++. +|....++.++|.++...|++++|+..++++++.
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998 6777889999999999999999999999999987
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-16 Score=120.09 Aligned_cols=134 Identities=18% Similarity=0.163 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..++++++..| .+...+..+|.++...|++++|+.+|++++...+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------ 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------------
Confidence 3567889999999999999999999999999 889999999999999999999999999999764331
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
...+..+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++|+..+++++..+|+
T Consensus 69 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp -HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred -hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 4567789999999999999999999999999999999999999999999999999999999999885
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=150.03 Aligned_cols=262 Identities=11% Similarity=0.024 Sum_probs=184.1
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhcccc--CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLL--TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIY 110 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~--~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~ 110 (370)
.....+...|+|++|+..+.+++..... ..|. ....+...+.++...|++++|...+.++..+.. ..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~---- 159 (411)
T 4a1s_A 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG-EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR------QL---- 159 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HH----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------Hh----
Confidence 3456677899999999999997654211 1233 233344457889999999999999988743311 00
Q ss_pred CCCCCcccchhHHHHHHHcCcccCC----------ccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHH
Q 017532 111 PNRTGSMVPFSLRWLYAVLPIKLSN----------RQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCL 180 (370)
Q Consensus 111 ~~~~~~~~~~~~r~l~a~~~~~~g~----------~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 180 (370)
.+.. ... ......+.+....|+ ..++...+.+.+..+.+.+....... . ......++..+
T Consensus 160 ~~~~--~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~-----~~~~~~~~~~l 229 (411)
T 4a1s_A 160 GDRL--SEG-RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG--D-----RGAQGRACGNL 229 (411)
T ss_dssp TCHH--HHH-HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--C-----HHHHHHHHHHH
T ss_pred hchH--HHH-HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC--C-----HHHHHHHHHHH
Confidence 0000 000 111123444455666 44444445554444443332211000 0 01124677899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
|.++...|++++|+.+++++++..+ .. ..++..+|.++...|++++|+.+|++++++.+.. .++..
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~ 301 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAR-EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-------GEREV 301 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-------TCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-------CCHHH
Confidence 9999999999999999999998766 22 2378899999999999999999999999887763 22223
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYN------DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...++..+|.++...|++++|+.+|+++++..+. ...++.++|.++...|++++|+.++++++++.+..
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 3778899999999999999999999999988533 34689999999999999999999999999998764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=130.24 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 214 ~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
.||.++...|++++|++.|++++ ..+|+. ...++.+|.+|+..|++++|+++|+++++++|+++.++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~------------~~~p~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST------------PSPRQK-SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS------------CSHHHH-HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhc------------ccCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 47889999999999999999998 556766 77788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 294 NNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 294 ~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
+++|.++...|++++|+..|+++++++|++ ..++++++.+|...... .++...++++..+..|++.
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~-~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPTQ---KDLVLKIAELLCKNDVT-DGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCSS-SSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhCcCCH
Confidence 999999999999999999999999999998 88999999998754432 2455556666667777653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=133.83 Aligned_cols=171 Identities=16% Similarity=0.038 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| .++.++..+|.++...|++++|+.+|++++++.+..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------ 110 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------------ 110 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc------------
Confidence 5667899999999999999999999999999 899999999999999999999999999999765442
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---------
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL--------- 325 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~--------- 325 (370)
..++..+|.+++..|++++|+..|+++++.+|++.......+.+ ...|++++|+..+++++...|....
T Consensus 111 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 1xnf_A 111 -NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188 (275)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred -cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 56678899999999999999999999999999998776666654 6668999999999888887775411
Q ss_pred -------------------------hHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 326 -------------------------NETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 326 -------------------------~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
...++++++.+|... +..+.....++......|++
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCTT
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCchh
Confidence 035667777777643 44667777777666666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=129.61 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHH
Q 017532 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~ 273 (370)
-..|++++..+| .+...++.+|.++...|++++|+..|++++.+.+.+ ..++.++|.++...|+++
T Consensus 7 ~~~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 7 GGTIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-------------SRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CCSHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-------------HHHHHHHHHHHHHHhhHH
Confidence 456888999999 899999999999999999999999999999765442 567889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 274 eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+|+..|++++.++|+++.+++++|.++...|++++|++.|+++++.+|+.
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999999999999999999999999875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-16 Score=144.17 Aligned_cols=193 Identities=10% Similarity=0.006 Sum_probs=150.6
Q ss_pred HHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 125 LYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 125 l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
..+......|+.++|+..+...+......- + ....+.+++.+|.++...|+++.|+..+++++...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~---------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVS-----D---------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----C---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-----C---------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 344445678999999888877654332110 0 01124678899999999999999999999999865
Q ss_pred CC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHH
Q 017532 205 NG--L----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVRE 278 (370)
Q Consensus 205 ~~--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~ 278 (370)
+. . ...++..+|.++...|++++|+.+|++++++.+.. .++.....++.++|.++...|++++|+.+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI-------QNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 41 1 23567899999999999999999999999987653 23333378899999999999999999999
Q ss_pred HHHHHh-----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHHH
Q 017532 279 YEECIE-----RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV--ALNETLVVNLCSMYE 338 (370)
Q Consensus 279 ~~~~l~-----~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~~~nl~~lye 338 (370)
|+++++ .+|....+++++|.++...|++++|+.+++++++..+.. ......+..+..+|.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999 788889999999999999999999999999999986542 111334455666664
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=150.50 Aligned_cols=259 Identities=11% Similarity=0.017 Sum_probs=167.3
Q ss_pred cCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHH---HhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcc
Q 017532 41 RGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLA---LMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSM 117 (370)
Q Consensus 41 ~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~a---l~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 117 (370)
.++|++|+..+++++.. +|.+...+..+ +.+ +...+++++|+..++++..+++....
T Consensus 151 ~~~y~~A~~~~~kal~~----~p~~~~~~~~~-~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~--------------- 210 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEK----KPKNPEFTSGL-AIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY--------------- 210 (472)
T ss_dssp TTHHHHHHHHHHHHHHH----STTCHHHHHHH-HHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------------
T ss_pred cccHHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------------
Confidence 45688888888886543 46544333332 222 44556677777777776554421110
Q ss_pred cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017532 118 VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLM 197 (370)
Q Consensus 118 ~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 197 (370)
+-..+......+....|+..+|+..+...+...+. ...++..+|.++...|++++|+..+
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--------------------VTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--------------------HHHHHHHHHHHHHHcCchHHHHHHH
Confidence 00111112233334456666666655544321111 0245678999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 198 NESIGRGNGLDPILVSKLGFIQMQV-------------------GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 198 ~~~l~~~~~~~~~~~~~lg~~~~~~-------------------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
+++++..| .+..++..+|.+|... +.+++|+.+|+++.++.+.. ..+
T Consensus 271 ~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~ 336 (472)
T 4g1t_A 271 KKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL-------------FRV 336 (472)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT-------------CCC
T ss_pred HHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-------------hhh
Confidence 99999999 9999999999988653 34678888888888764442 445
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCcch---------
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIV---AINNKALC-LMYLRDLSDSIKVLENALERVPTVAL--------- 325 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~---~~~nla~~-~~~~g~~~~A~~~l~~al~~~p~~~~--------- 325 (370)
+..+|.++...|++++|+++|+++++.+|++.. +++++|.. +...|++++|+..|+++++++|+...
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 677999999999999999999999999887653 46677754 45789999999999999988776421
Q ss_pred ------------hHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 326 ------------NETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 326 ------------~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
...++.+|+.+|....+ .+++.+..++.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~--~~~A~~~y~kA 456 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEK--MQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHH--CC---------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence 13567788888875433 44444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-15 Score=132.46 Aligned_cols=230 Identities=13% Similarity=0.046 Sum_probs=177.0
Q ss_pred chHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcc----cCCccc
Q 017532 63 PHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIK----LSNRQV 138 (370)
Q Consensus 63 P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~----~g~~~~ 138 (370)
|.+...++. .+..+...|++++|...+++......+ .. ....+.+... .|+.++
T Consensus 3 ~~~~~a~~~-lg~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~a-~~~lg~~~~~g~~~~~~~~~ 60 (273)
T 1ouv_A 3 EQDPKELVG-LGAKSYKEKDFTQAKKYFEKACDLKEN--------------------SG-CFNLGVLYYQGQGVEKNLKK 60 (273)
T ss_dssp --CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTTCH--------------------HH-HHHHHHHHHHTSSSCCCHHH
T ss_pred CCChHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCH--------------------HH-HHHHHHHHHcCCCcCCCHHH
Confidence 443334433 478889999999999999988542211 11 1122333344 788888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 017532 139 GLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLS----SKEYNVCFDLMNESIGRGNGLDPILVSK 214 (370)
Q Consensus 139 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 214 (370)
|+..+...+... ...+++.+|.++.. .+++++|+..|+++++. .++.+++.
T Consensus 61 A~~~~~~a~~~~----------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~ 115 (273)
T 1ouv_A 61 AASFYAKACDLN----------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---KYAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHCC----------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---CCccHHHH
Confidence 888777654321 12466789999999 99999999999999986 46889999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 017532 215 LGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERD 286 (370)
Q Consensus 215 lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~ 286 (370)
+|.++.. .|++++|+.+|+++++.. + ..++.++|.++.. .+++++|+.+|+++++.
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~- 179 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN-----------D----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL- 179 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------c----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 9999999 999999999999999631 1 4567889999999 99999999999999987
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc--CCchhhHHHHHHHHhhhCC
Q 017532 287 YNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY--VNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 287 p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~--~~~~~~~~~ll~~~~~~~~ 360 (370)
.++.+++++|.++.. .+++++|++.|+++++.+| ....++++.+|.... .+..++...++++.....|
T Consensus 180 -~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 180 -KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp -TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 468999999999999 9999999999999999876 568899999998411 3345667777766655554
Q ss_pred C
Q 017532 361 D 361 (370)
Q Consensus 361 d 361 (370)
+
T Consensus 254 ~ 254 (273)
T 1ouv_A 254 K 254 (273)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-15 Score=135.49 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=165.9
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG- 204 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~- 204 (370)
.+.+....|++++|+..+..++..+........ .....++..+|.++...|++++|+..+++++...
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH------------PDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345557889999999999888765544320000 0113567789999999999999999999999863
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 205 -------NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 205 -------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
+ ....++..+|.++...|++++|+.+|++++++...... ...|.. ..++.++|.++...|++++|+.
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 101 KTLGKDHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----KDHPDV-AKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----TTCHHH-HHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHhCCCCh-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----CCChHH-HHHHHHHHHHHHHcCCHHHHHH
Confidence 3 44577899999999999999999999999987533100 123555 7888999999999999999999
Q ss_pred HHHHHHhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------------------
Q 017532 278 EYEECIER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT--------------------------- 322 (370)
Q Consensus 278 ~~~~~l~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~--------------------------- 322 (370)
+|++++.. +|....+++++|.++...|++++|++.++++++..|.
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 99999998 6777789999999999999999999999999985322
Q ss_pred -------------------cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCC
Q 017532 323 -------------------VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 323 -------------------~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~ 360 (370)
......++++++.+|... +..+++..+++..-+..+
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ--GKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---CCSCCCC---------CHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhh
Confidence 112256778899998754 346777777766554433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-16 Score=139.80 Aligned_cols=185 Identities=7% Similarity=0.021 Sum_probs=143.2
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~- 208 (370)
...|++++|++.+...+...... +.. ...+.++..+|.+|...|++++|+..|++++...+. .+
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~------~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANN------RSL--------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT------TCH--------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHc------CCH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45688888888888776544321 000 012356778999999999999999999999887541 22
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 ---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++..+|.+|.. |++++|+.+|++++.+.+.. .++.....++.++|.++..+|++++|+.+|++++.+
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-------CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3577899999999 99999999999999987763 223333678899999999999999999999999998
Q ss_pred CCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh--HHHHHHHHHHHH
Q 017532 286 DYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN--ETLVVNLCSMYE 338 (370)
Q Consensus 286 ~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~~~~nl~~lye 338 (370)
.|.+ ..++.++|.++...|++++|+..|++++ .+|++... ...+.++...|+
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~~ 244 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAYD 244 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHH
Confidence 6543 3478899999999999999999999999 99976322 234555665554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=137.45 Aligned_cols=153 Identities=9% Similarity=0.030 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|++++|+..|+++++.+| +++.+++.+|.++.+.|++++|+..|++++... |+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------------p~~ 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------------QDT 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------------CSH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------------cch
Confidence 4556889999999999999999999999999 999999999999999999999999999998543 222
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
.......+..+...++.++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++ ....+..+++
T Consensus 185 -~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-~~~~a~~~l~ 262 (287)
T 3qou_A 185 -RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-ADGQTRXTFQ 262 (287)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-GGGHHHHHHH
T ss_pred -HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-ccchHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999999975 2256889999
Q ss_pred HHHHhccC
Q 017532 335 SMYELAYV 342 (370)
Q Consensus 335 ~lyel~~~ 342 (370)
.+|.....
T Consensus 263 ~~~~~~g~ 270 (287)
T 3qou_A 263 EILAALGT 270 (287)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 99986554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=129.01 Aligned_cols=163 Identities=7% Similarity=-0.022 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
.++.+|..+...|++++|+..|+++++.+| +++.++..+|.++...|++++|+..|+++++..+ +|.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------~~~-- 74 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----------DNS-- 74 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----------CHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----------ChH--
Confidence 345788899999999999999999999999 9999999999999999999999999999985422 232
Q ss_pred HHHHHhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 256 NLVSRNKALIY-LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 256 ~~~~~~~g~~~-~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
.+...+.+. ...++..+|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++. ...+.++++
T Consensus 75 --~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~a~~~l~ 151 (176)
T 2r5s_A 75 --YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-DGEVKKTFM 151 (176)
T ss_dssp --HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-TTHHHHHHH
T ss_pred --HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-hHHHHHHHH
Confidence 223334332 2334555789999999999999999999999999999999999999999999999751 145888999
Q ss_pred HHHHhccCCchhhHHHHHHHH
Q 017532 335 SMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~ 355 (370)
.+|....+.. +....+.+.+
T Consensus 152 ~~~~~~g~~~-~A~~~y~~al 171 (176)
T 2r5s_A 152 DILSALGQGN-AIASKYRRQL 171 (176)
T ss_dssp HHHHHHCSSC-HHHHHHHHHH
T ss_pred HHHHHhCCCC-cHHHHHHHHH
Confidence 9988655533 3444444333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=148.50 Aligned_cols=135 Identities=10% Similarity=-0.041 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+++|++++++.++.
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------ 90 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------------ 90 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------------
Confidence 4667899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL---RDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~---g~~~~A~~~l~~al~~~p~~ 323 (370)
..++.++|.++...|++++|++.|+++++.+|++..++.++|.++... |++++|++.++++++.+|+.
T Consensus 91 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 91 -PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 567889999999999999999999999999999999999999999999 99999999999999999986
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=128.41 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|++++|+..|++++ + .++.+++.+|.++...|++++|+.+|++++++.+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------ 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------------ 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 345788999999999999999999996 3 467899999999999999999999999999764432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI----------------VAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~----------------~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
..++.++|.+++..|++++|+..|+++++..|.+. .+++++|.++...|++++|++.|+++++
T Consensus 71 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 71 -AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999888766 9999999999999999999999999999
Q ss_pred hCCCc
Q 017532 319 RVPTV 323 (370)
Q Consensus 319 ~~p~~ 323 (370)
.+|+.
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99975
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-14 Score=129.79 Aligned_cols=222 Identities=9% Similarity=-0.031 Sum_probs=140.6
Q ss_pred HHHHHHHHHhhhccccCCchHHHHHHHHHHHHHh-------hhcCH-------HHHHHHhhhcCC-CCCCCCcccccCCC
Q 017532 45 RTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALM-------KLRRF-------DEAQQELDSLED-FNSSGYQYETYPHI 109 (370)
Q Consensus 45 ~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~-------~l~~~-------~~A~~~~~~~~~-l~~~~~~~~~~~~~ 109 (370)
++|+..|++++.. +|.+...|+.+ +..+. +.|++ ++|...+++... +++ +.
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~-------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEA-AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KN-------- 98 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHH-HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TC--------
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHH-HHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-cc--------
Confidence 6788888887543 57765666554 44433 34665 788888887765 332 10
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
. ......+.+....|+.++|...+..++...+. ... .++..++.++.+.|+
T Consensus 99 --------~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~-------~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 99 --------M--LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------------DPT-------LVYIQYMKFARRAEG 149 (308)
T ss_dssp --------H--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------------CTH-------HHHHHHHHHHHHHHC
T ss_pred --------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------------Ccc-------HHHHHHHHHHHHhcC
Confidence 0 11122233334556666666666555431110 000 144567777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ-VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+++|+..|+++++..| .+..++...+.+... .|++++|.+.|++++++.++. ..+|..+|..+..
T Consensus 150 ~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~~~~~ 215 (308)
T 2ond_A 150 IKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------------PEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHH
Confidence 8888888887777777 666666555554332 577777888887777654432 4556777777777
Q ss_pred cCCHHHHHHHHHHHHhh---CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 269 GKDYVSAVREYEECIER---DYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~---~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.|++++|+..|++++.. +|+ ...++.+++......|++++|...++++++..|+.
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 77888888888877774 443 56677777777777777778877777777777764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-15 Score=134.48 Aligned_cols=174 Identities=11% Similarity=-0.060 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN-G----LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~-~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+.++...|+|++|+..|++++...+ . ....++..+|.+|..+|++++|+.+|++++++.+.. .++.
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-------g~~~ 114 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------GQFR 114 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------TCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------CCHH
Confidence 345677888999999999999988753 0 124678999999999999999999999999987763 2333
Q ss_pred HHHHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 254 FRNLVSRNKALIYLVG-KDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
....++.++|.++... |++++|+.+|++++++.|.+ ..+++++|.++..+|++++|+.+|+++++..|+....
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 3367889999999996 99999999999999998754 4679999999999999999999999999999876321
Q ss_pred ----HHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 327 ----ETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 327 ----~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
...+++++.+|... +..+.+...++......|+
T Consensus 195 ~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAA--TDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp GGGHHHHHHHHHHHHHHT--TCHHHHHHHHHGGGCC---
T ss_pred cHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Confidence 12678888888643 3456666666655554444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=139.77 Aligned_cols=250 Identities=9% Similarity=-0.004 Sum_probs=182.1
Q ss_pred HHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.......|+|++|+..+.++...... .++......+...+.++..+|+++.|...+.+..++.... ++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------~~~ 177 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH----------PLY 177 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS----------TTC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC----------CCc
Confidence 34457899999999999998654321 1122122233444788999999999999998885432100 000
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVC 193 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (370)
. ...... ....+.+....|++++|++.+...+..++..- . ......+++++|.++...|++++|
T Consensus 178 ~-~~~~~~-~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----~----------~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 178 S-IRTIQS-LFVIAGNYDDFKHYDKALPHLEAALELAMDIQ----N----------DRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp H-HHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----C----------HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred h-hhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----C----------HHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0 001111 12345556788999999999988876554321 0 002246788999999999999999
Q ss_pred HHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 194 FDLMNESIG-----RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 194 ~~~~~~~l~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+..+++++. .+| ....++..+|.++...|++++|+.+|++++++.+.. .++.. ......++.++..
T Consensus 242 ~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~-~~~~~~l~~ly~~ 312 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR-------SHKFY-KELFLFLQAVYKE 312 (378)
T ss_dssp HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-------CCSCH-HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------CCHHH-HHHHHHHHHHHhC
Confidence 999999999 777 668899999999999999999999999999986653 22323 2345678888888
Q ss_pred cCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 269 GKD---YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 269 ~g~---~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
.|+ +.+|+..+++. ...|....++..+|.++...|++++|+.+|+++++..
T Consensus 313 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 998 88999888873 2234555788899999999999999999999998764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=152.81 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=140.7
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 185 LSSKEYNVCFDLMNESI--------GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
...|++++|+..+++++ +.+| .+..++..+|.++.+.|++++|+..|++++++.+++ .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-------------W 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-------------H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-------------H
Confidence 67899999999999999 8889 999999999999999999999999999999876553 6
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.++.++|.++...|++++|++.|+++++++|+++.+++++|.++...|++++ ++.|+++++.+|++ ..+++|++.+
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~---~~a~~~lg~~ 543 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV---ISAAFGLARA 543 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch---HHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999 99999999999998 7899999999
Q ss_pred HHhccCCchhhHHHHHHHHhhhCCC
Q 017532 337 YELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
|... +..+++...++......|+
T Consensus 544 ~~~~--g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 544 RSAE--GDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHT--TCHHHHHHHHHTSCTTSTT
T ss_pred HHHc--CCHHHHHHHHHhhcccCcc
Confidence 8753 4467777776665555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=148.27 Aligned_cols=161 Identities=7% Similarity=-0.060 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.|++++|+..|+++++.+| .+..+++.+|.++...|++++|+++|++++++.++ . ..++.++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~-~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------------H-PEAVARLGRVR 67 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------------C-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------C-HHHHHHHHHHH
Confidence 4899999999999999999 99999999999999999999999999999964333 3 66789999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC-Cch
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV-NHS 345 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~-~~~ 345 (370)
..+|++++|++.|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|++ ...+++++.+|....+ +..
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccH
Confidence 999999999999999999999999999999999999999999999999999999987 7889999999885411 446
Q ss_pred hhHHHHHHHHhhhCCCCCC
Q 017532 346 DIKRTLSSWIGRVAPDDFD 364 (370)
Q Consensus 346 ~~~~~ll~~~~~~~~d~~~ 364 (370)
++....++...+..|+..+
T Consensus 145 ~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 145 DVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHhcCCcccC
Confidence 7777777776666666543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=125.09 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=113.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
+...|++++|+..+++++..+| .++.++..+|.++...|++++|+.+|++++++.+.+ ..++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------------AELYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------------HHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------HHHHHHHH
Confidence 3456999999999999999999 999999999999999999999999999999876553 45678899
Q ss_pred HH-HHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 264 LI-YLVGKDY--VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 264 ~~-~~~~g~~--~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+ ++..|++ ++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99 8899999 999999999999999999999999999999999999999999999999986
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=122.00 Aligned_cols=115 Identities=18% Similarity=0.070 Sum_probs=103.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e 274 (370)
..|++++..+| .+...++.+|.++...|++++|+..|++++.+.+.+ ..++.++|.++...|++++
T Consensus 5 ~~l~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~g~~~~ 70 (142)
T 2xcb_A 5 GTLAMLRGLSE-DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-------------ARYFLGLGACRQSLGLYEQ 70 (142)
T ss_dssp ----CCTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHcCCH-HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-------------HHHHHHHHHHHHHHhhHHH
Confidence 46778888888 888999999999999999999999999999764442 5678899999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+..|++++.++|+++.+++++|.++...|++++|++.|+++++.+|++
T Consensus 71 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 71 ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=118.82 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|.++...|++++|+..|+++++..| .+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----------- 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----------
Confidence 46677899999999999999999999999999 999999999999999999999999999999764432
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC--LMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~--~~~~g~~~~A~~~l~~al~~~ 320 (370)
..++.++|.++...|++++|+.+|+++++.+|.+..++.+++.+ +...|++++|++.++++....
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 56688999999999999999999999999999999988666555 888899999999999887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-13 Score=129.01 Aligned_cols=287 Identities=11% Similarity=0.019 Sum_probs=194.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
...++..|++++|+..+.++....-..+|......+...+.++...|++++|...+.+...+.+. ..
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~ 87 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-------------HD 87 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------------TT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-------------cC
Confidence 34566899999999999997654311111111122344467788999999999999887543210 00
Q ss_pred CcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017532 115 GSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194 (370)
Q Consensus 115 ~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 194 (370)
............+.+....|++.+|+..+...+...+..-... . .....++.++|.++...|++++|.
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~---~---------~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ---L---------PMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT---S---------THHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc---C---------cHHHHHHHHHHHHHHHhcCHHHHH
Confidence 0000011122344555778999999999888776554321000 0 001245678999999999999999
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 195 DLMNESIGRGNGL----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 195 ~~~~~~l~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
..+++++...+.. ...++..+|.++...|++++|..++++++.+.+.. ...+..........+.++...|
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG------KYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------CCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------CcchhHHHHHHHHHHHHHHHCC
Confidence 9999999877621 23567889999999999999999999999876542 1112221222234566688999
Q ss_pred CHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHhccCC
Q 017532 271 DYVSAVREYEECIERDYND----IVAINNKALCLMYLRDLSDSIKVLENALERVPTVA---LNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~~~nl~~lyel~~~~ 343 (370)
++++|...+++++...|.+ ...+.++|.++...|++++|+..+++++...+... ....+...++.+|....
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 307 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG-- 307 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC--
Confidence 9999999999999877643 34678899999999999999999999988754321 11246778888876443
Q ss_pred chhhHHHHHHH
Q 017532 344 HSDIKRTLSSW 354 (370)
Q Consensus 344 ~~~~~~~ll~~ 354 (370)
..++....++.
T Consensus 308 ~~~~A~~~l~~ 318 (373)
T 1hz4_A 308 RKSDAQRVLLD 318 (373)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 35555555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=129.20 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=137.8
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGR-- 203 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 203 (370)
.+.+....|++++|+..+...+........... .....++..+|.++...|++++|+..+++++..
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDH------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc------------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 445557789999999999888766543311100 012356789999999999999999999999987
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 204 ------GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 204 ------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
+| ....++..+|.++...|++++|+.+|++++++...... ...|.. ..++.++|.++...|++++|+.
T Consensus 117 ~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 117 KVLGKFHP-DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG----PDDPNV-AKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC----TTCHHH-HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCCHHH-HHHHHHHHHHHHHcCCHHHHHH
Confidence 34 55678899999999999999999999999987433210 235555 7889999999999999999999
Q ss_pred HHHHHHhh-------------------------------------------------CCCCHHHHHHHHHHHHHhCCHHH
Q 017532 278 EYEECIER-------------------------------------------------DYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 278 ~~~~~l~~-------------------------------------------------~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
.|+++++. .|....++.++|.++...|++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999986 24445677888888888888888
Q ss_pred HHHHHHHHHHh
Q 017532 309 SIKVLENALER 319 (370)
Q Consensus 309 A~~~l~~al~~ 319 (370)
|+..++++++.
T Consensus 271 A~~~~~~al~~ 281 (283)
T 3edt_B 271 AHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-15 Score=129.31 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=138.6
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+......|+.++|+..+..++...+... ....+++.+|.++...|+|++|+..|+++++.+|
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P- 72 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGP-----------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP- 72 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTST-----------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-
Confidence 3334667999999988888765332110 0124667899999999999999999999999999
Q ss_pred CCH---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHhhcCCccCCccchHHH----------H
Q 017532 207 LDP---ILVSKLGFIQMQ------------------VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF----------R 255 (370)
Q Consensus 207 ~~~---~~~~~lg~~~~~------------------~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~----------~ 255 (370)
.++ .+++.+|.++.. .|++++|+..|+++++..|++.. -+.. .
T Consensus 73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~------a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY------TTDATKRLVFLKDRL 146 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT------HHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh------HHHHHHHHHHHHHHH
Confidence 655 378889998876 67999999999999987666421 1110 0
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
......+|.+++..|++++|+..|+++++..|+++ .++.++|.++.++|++++|++.++++....|+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 22336789999999999999999999999999987 679999999999999999999999999988875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=113.79 Aligned_cols=112 Identities=7% Similarity=0.006 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.++.++|..+++.|+|++|+..|+++++.+| .++.+++++|.++..+|++++|+..|++++++.++.. ...+.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-----ADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----hhhHH
Confidence 34567899999999999999999999999999 9999999999999999999999999999999877642 22333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
. +.++.++|.++..+|++++|++.|++++..+|+ +...
T Consensus 82 ~-a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 82 I-AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 3 778889999999999999999999999988775 4433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-15 Score=114.68 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
.+..+..+|..++..|++++|+..|++++++.+.. ..++.++|.+++..|++++|+..|+++++++|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35667888888888888888888888888764432 56678888888899999999999999998899
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCcchhHHHHHHHHHHH
Q 017532 288 NDIVAINNKALCLMYLRDLSDSIKVLENALERV------PTVALNETLVVNLCSMY 337 (370)
Q Consensus 288 ~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~~~~nl~~ly 337 (370)
+++.+++++|.++...|++++|+..|+++++.+ |++ ..+...+..+.
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~---~~~~~~l~~~~ 122 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA---REIDQLYYKAS 122 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH---HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH---HHHHHHHHHHH
Confidence 888889999999999999999999999998888 654 55555555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-16 Score=143.60 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=124.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC---CccchHHHHHHHHHhHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED---GLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~---~~~~~p~~~~~~~~~~g 263 (370)
.+++++|+..+++++...| .....+..+|.+++..|++++|+..|++++++.+...... .....+.. ..++.++|
T Consensus 126 L~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~-~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR-LASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH-HHHHHHHH
T ss_pred EeecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH-HHHHHHHH
Confidence 4666677777777777677 7778888888888888888888888888888766531000 00112323 67899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+..+++.+|....+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 7889999999886554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=120.16 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER---- 285 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~---- 285 (370)
..+..+|..++..|++++|+..|++++++.++..........|.. ..+|.++|.++..+|+|++|+..|+++|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~-a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-AFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445667777777777777877787777776652110000223433 679999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 286 ---DYNDIVAI----NNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 286 ---~p~~~~~~----~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+|++..+| +|+|.++..+|++++|++.|+++++++|++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999999986
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=133.02 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
.+++.+|.+++..|+|++|+..|++++...| .+ ..+++++|.++..+|++++|+.+|++++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh-ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5567899999999999999999999999999 66 6899999999999999999999999999775
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS-IKVLENALE 318 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A-~~~l~~al~ 318 (370)
+++ ..+++++|.+++..|++++|+..|+++++++|++..++.+++.++...|++++| ...|.+++.
T Consensus 227 p~~-------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNN-------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 667899999999999999999999999999999999999999999999999999 567777765
Q ss_pred h
Q 017532 319 R 319 (370)
Q Consensus 319 ~ 319 (370)
.
T Consensus 294 ~ 294 (336)
T 1p5q_A 294 R 294 (336)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=124.19 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh----------------HHHHHHHcCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN----------------KALIYLVGKD 271 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~----------------~g~~~~~~g~ 271 (370)
++..+...|..++..|++++|+..|++++++ +|+. ..++.. +|.++...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------~p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL------------NIDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CHHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------CCCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC
Confidence 4567788899999999999999999999964 4544 566777 9999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
+++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|++ ..++++++.+|-.
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~ 134 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 7888999988753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=116.88 Aligned_cols=102 Identities=8% Similarity=-0.109 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|+|++|+..|++++..+| .++.+|..+|.++...|++++|+.+|++++++.|++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~------------ 103 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND------------ 103 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC------------
Confidence 5678999999999999999999999999999 999999999999999999999999999999876653
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
..+++++|.++...|++++|+..|++++++.|+.+
T Consensus 104 -~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 -YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred -cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 56789999999999999999999999999999865
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=112.58 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..++..+|.++++.|++++|+.+|++++++.|+. ..++.++|.+++.+|++++|++.|+++++++|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-------------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-------------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 4567889999999999999999999999875542 667899999999999999999999999999876
Q ss_pred CH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 DI-------VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~~-------~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+. .++.++|.++...|++++|++.|+++++..|++
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 53 589999999999999999999999999999874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-14 Score=111.18 Aligned_cols=115 Identities=13% Similarity=-0.053 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|..++..|+|++|+..|+++++.+| .++.++..+|.++...|++++|+..|++++++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------- 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----------- 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----------
Confidence 35677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMY 302 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~ 302 (370)
..++.++|.++...|++++|+..|+++++++ |.+..++..++.+...
T Consensus 72 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 72 --VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999 9999888888877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=119.38 Aligned_cols=126 Identities=14% Similarity=0.068 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc-------hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS-------EVEFRNLVSRNKALIYLVGKDYVSAVREYEE 281 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~-------~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 281 (370)
...+..+|..++..|++++|+..|++++++.+..... ..+. +|.. ..++.++|.+++..|++++|+..|++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR-EKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-SCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4567889999999999999999999999874321000 0011 4444 67899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHHHh
Q 017532 282 CIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNE-TLVVNLCSMYEL 339 (370)
Q Consensus 282 ~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~-~~~~nl~~lyel 339 (370)
+++++|+++.+++++|.++..+|++++|+..|+++++++|++ . .+...+..+...
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA---ASVVAREMKIVTER 144 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 4 455566665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=117.14 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.++..+..+|.+++..|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..|+++++++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-------------PIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445677888888888888888888888888664432 5667888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 8888888888888888888888888888888888876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=117.08 Aligned_cols=115 Identities=19% Similarity=0.124 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|.+++..|+|++|+..|+++++.+| .++.+++.+|.++...|++++|+.+|++++++.+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------- 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----------- 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----------
Confidence 35677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
..++.++|.+++..|++++|+.+|+++++++|++..++.+++.+..+
T Consensus 79 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 79 --SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999988888876554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-14 Score=108.33 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|..+...|++++|+..+++++...| .+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------------ 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC------------
Confidence 4556777777778888888888888887777 777777778888888888888888888877653331
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
..++..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 -SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 445677788888888888888888888888887777888888777777764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=119.02 Aligned_cols=162 Identities=10% Similarity=-0.028 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG----DLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. | ++++|+.+|+++.+.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------- 82 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----------- 82 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----------
Confidence 467889999999999999999999999875 568999999999998 7 999999999999741
Q ss_pred chHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Q 017532 250 SEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERDY--NDIVAINNKALCLMY----LRDLSDSIKVLENALER 319 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p--~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~ 319 (370)
.+ ..+..++|.+|.. .+++++|+.+|+++++.+| .++.+++++|.+|.. .+++++|+..|+++++.
T Consensus 83 g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 83 GS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 12 4567889999988 8999999999999999988 458999999999999 88999999999999998
Q ss_pred CCCcchhHHHHHHHHHHHHhcc----CCchhhHHHHHHHHhhh
Q 017532 320 VPTVALNETLVVNLCSMYELAY----VNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 320 ~p~~~~~~~~~~nl~~lyel~~----~~~~~~~~~ll~~~~~~ 358 (370)
|.+ ....++|+.+|.... ....++...+++.-...
T Consensus 159 -~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 -SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 433 567899999998542 22456667776655443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-14 Score=109.78 Aligned_cols=116 Identities=20% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|.++...|++++|+..|+++++..+. . ..++..+|.++...|++++|+..|+++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------------D-AKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------------C-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------c-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34455566666666666666666666666632221 1 3445556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|.++.+++++|.++...|++++|++.|+++++.+|.. ..+.++++.+|.
T Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 129 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMM 129 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHH
Confidence 6666666666666666666666666666666666654 455555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-15 Score=126.16 Aligned_cols=157 Identities=13% Similarity=0.041 Sum_probs=113.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC---ccchHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG---LLSEVEFRNL 257 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~---~~~~p~~~~~ 257 (370)
+......|+++.|...+.......+ .....+..+|..++..|++++|+..|++++++.+....... ..........
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3344445666666666655444434 45566777888888888888888888888876554310000 0000111246
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.++|.+++..|++++|+.+|++++..+|+++.+++++|.++...|++++|+..|+++++.+|++ ..+..+++.++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---LDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999988 78888888888
Q ss_pred Hhcc
Q 017532 338 ELAY 341 (370)
Q Consensus 338 el~~ 341 (370)
....
T Consensus 167 ~~~~ 170 (198)
T 2fbn_A 167 NKLK 170 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=122.01 Aligned_cols=184 Identities=11% Similarity=0.128 Sum_probs=146.3
Q ss_pred HHhHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 017532 163 EESVKSWKKRE-------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI-LVSKLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 163 ~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~ 234 (370)
+++...+.+.+ ..++..+|.++...|++++|..+|+++++..| .++. ++..+|.++.+.|++++|...|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45555555544 45788999999999999999999999999999 7775 899999999999999999999999
Q ss_pred HHHHhhcCCccCCccchHHHHHHHHHhHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 235 VEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL-VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 235 a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
+++..+.. ..++...+.+.. ..|++++|+..|+++++.+|+++.++.++|..+...|++++|+..|
T Consensus 160 a~~~~p~~-------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 160 AREDARTR-------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHTSTTCC-------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhcCCCC-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99643321 344544555433 2799999999999999999999999999999999999999999999
Q ss_pred HHHHHh---CCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCC
Q 017532 314 ENALER---VPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFD 364 (370)
Q Consensus 314 ~~al~~---~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~ 364 (370)
++++.. .|+. ...++.++..++... +..+....+.....+..|++.+
T Consensus 227 ~~al~~~~l~p~~--~~~l~~~~~~~~~~~--g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 227 ERVLTSGSLPPEK--SGEIWARFLAFESNI--GDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHSSSSCGGG--CHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhccCCCHHH--HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcccccc
Confidence 999996 4431 266777777776543 4467777777777777777654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-12 Score=123.54 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=148.3
Q ss_pred cCCccchHHHHHHHHHHHHHH----HHH-Hh-----hHhhHHhHHHHHHHH----HHHHHHHHHHHHh----cCCHHHHH
Q 017532 133 LSNRQVGLDRFYELLDFVREK----LAR-KL-----AEKLEESVKSWKKRE----IFVLNCLIGYHLS----SKEYNVCF 194 (370)
Q Consensus 133 ~g~~~~al~~l~~ll~~~~~~----~~~-~~-----~~~~~~~~~~~~~~~----~~~~~~la~~~~~----~g~~~~A~ 194 (370)
.++..+|+..+.......... +.. .. ......+...++... ..+++.+|.++.. .+++++|+
T Consensus 200 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 577777777776654321110 000 00 122334444444433 5678888888888 89999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+. .+ ..++.++|.++...
T Consensus 280 ~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----------~~----~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 280 EWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----------GD----ATAQANLGAIYFRL 341 (490)
T ss_dssp HHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----------TC----HHHHHHHHHHHHHS
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----------CC----HHHHHHHHHHHHhC
Confidence 999999865 4577889999999988 8999999999999852 12 34678899999886
Q ss_pred C---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc-
Q 017532 270 K---DYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY- 341 (370)
Q Consensus 270 g---~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~- 341 (370)
| ++++|+.+|+++++. .++.+++++|.++.. .+++++|+..|+++++..+ ....++|+.+|....
T Consensus 342 g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-----SAAQVQLGEIYYYGLG 414 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSS
T ss_pred CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHcCCC
Confidence 6 899999999999987 678999999999999 8999999999999998753 678899999998521
Q ss_pred -CCchhhHHHHHHHHhhhC
Q 017532 342 -VNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 342 -~~~~~~~~~ll~~~~~~~ 359 (370)
.++.+++..+.+......
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 344566666666555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=110.20 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.++.+|.++.+.|++++|+..|++++++.|++ ..++..+|.++...|++++|+..|+++++++|+++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 46788999999999999999999999765442 67789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+++++|.++...|++++|+..|+++++.+|++
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999975
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-14 Score=112.45 Aligned_cols=113 Identities=13% Similarity=-0.059 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..++..|++++|+..|++++..+| .++.++..+|.++...|++++|+.+|++++++.+++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------ 85 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE------------ 85 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------------
Confidence 4567889999999999999999999999999 999999999999999999999999999999875543
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
..+++++|.++...|++++|+..|+++++++|+++........+..
T Consensus 86 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 86 -PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 4567889999999999999999999999999988766555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-14 Score=109.51 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
...++.+|.++...|++++|+..|++++ .- ..+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------- 83 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAI--KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---------- 83 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----------
Confidence 5678899999999999999999999985 42 2467889999999999999999999999999764331
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD 305 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~ 305 (370)
..++.++|.++...|++++|+..|++++..+|.+..++.+++.++...|+
T Consensus 84 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 ---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999988774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=118.24 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=126.8
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++++|+..+..++...+.. ..+++.+|.++...|++++|+..+++++...|
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~--------------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSR--------------------GDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTS--------------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 3444467788888888777765433322 25667899999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 206 GLDPILVSKLGFIQM-QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
++.....++.+.. ..++..+|+..|++++++.|++ ..+++++|.++...|++++|+..|+++++
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 72 --DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN-------------FELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp --CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4555555565533 3334456899999999765442 56788999999999999999999999999
Q ss_pred hCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 285 RDYND--IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 285 ~~p~~--~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.+|+. ..++.++|.++...|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99875 67999999999999999999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-14 Score=113.41 Aligned_cols=105 Identities=15% Similarity=-0.009 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|..+...|+|++|+..|++++..+| .++.+++.+|.++...|++++|+..|++++++.+++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------------ 88 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE------------ 88 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------------
Confidence 4567899999999999999999999999999 999999999999999999999999999999875543
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
..+++++|.++...|++++|+..|+++++++|+++...
T Consensus 89 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 89 -PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 55688899999999999999999999999999877543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=116.53 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP----------------ILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..+..+|..++..|+|++|+..|++++...| .++ .++..+|.++...|++++|+.+|++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4556889999999999999999999999988 665 88999999999999999999999999976
Q ss_pred hhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHH
Q 017532 239 LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI-KVLENA 316 (370)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~-~~l~~a 316 (370)
.+.. ..+++.+|.+++..|++++|+..|+++++++|++..++.+++.++...++..++. ..+.++
T Consensus 118 ~p~~-------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 DKNN-------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp STTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred Cccc-------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 5678899999999999999999999999999999999999999999998888776 444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=125.12 Aligned_cols=170 Identities=9% Similarity=0.000 Sum_probs=133.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNG-LD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~-~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+.++...|++++|+..|.+++...+. .+ ..++..+|.+|..+|++++|+.+|++++++.+.. .++...
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-------g~~~~~ 115 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-------GTPDTA 115 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-------TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-------CCHHHH
Confidence 45677789999999999999887651 11 4577899999999999999999999999987653 234333
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---h
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---N 326 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---~ 326 (370)
..++.++|.++.. |++++|+.+|++++++.|.. ..+++++|.++..+|++++|+.+|++++++.|+... .
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 7788999999999 99999999999999987643 578999999999999999999999999998765321 1
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
...+++++.+|.. .+..+.....++... ..|+
T Consensus 195 ~~~~~~~g~~~~~--~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 195 YKKCIAQVLVQLH--RADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHh-CCCC
Confidence 2356677777653 234566666666555 4443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.8e-12 Score=121.52 Aligned_cols=167 Identities=13% Similarity=0.061 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLS-------SKEYN-------VCFDLMNESIG-RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 174 ~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..+++.+|..+.. .|+++ +|+.+|+++++ ..| .+..++..+|.++...|++++|...|++++++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 4567777777775 68877 89999999997 788 88999999999999999999999999999975
Q ss_pred hhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Q 017532 239 LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC-LMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~-~~~~g~~~~A~~~l~~al 317 (370)
.+. ++ ..+|.+.|.++...|++++|++.|+++++..|.+...+...+.+ +...|++++|+..|++++
T Consensus 351 ~p~---------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 351 EDI---------DP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp SSS---------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccc---------Cc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 332 22 34677778777778888888888888887777766666555543 335788888888888888
Q ss_pred HhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 318 ERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 318 ~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
+.+|++ ..++.+++.++. ..+..+..+.+++.....
T Consensus 419 ~~~p~~---~~~~~~~~~~~~--~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 419 KKYGDI---PEYVLAYIDYLS--HLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHTTC---HHHHHHHHHHHT--TTTCHHHHHHHHHHHHHS
T ss_pred HHCCCC---HHHHHHHHHHHH--hCCCHhhHHHHHHHHHhc
Confidence 888776 566677776654 334456666666655444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=124.26 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
..++.+|.++...|++++|+..+++++...+ .. ..+++.+|.+|...|++++|+.+|++++.+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~------ 188 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQL-TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL------ 188 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC-CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------
Confidence 3456788899999999999999999997654 22 4578999999999999999999999999775543
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN------DIVAINNKALCLMYLRDLSDS-IKVLENALERV 320 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~------~~~~~~nla~~~~~~g~~~~A-~~~l~~al~~~ 320 (370)
..++.....++.++|.++..+|++++|+.+|++++++.+. ...+++++|.++...|++++| ..++++++...
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2234332478999999999999999999999999987532 268999999999999999999 78899998753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-15 Score=143.10 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=121.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---CCccchHHHHHHHHHhH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE---DGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~---~~~~~~p~~~~~~~~~~ 262 (370)
..+++++|+..++.++...| .....+..+|.++++.|++++|+..|++++++.+..... ......+.. ..++.++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~-~~~~~nl 323 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL-LAAFLNL 323 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH-HHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH-HHHHHHH
Confidence 34566777777777777777 777888899999999999999999999999887663100 000012222 6789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
|.+++.+|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+..+++.++....+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 7788899988875544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=125.63 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=144.6
Q ss_pred cCCccchHHHHHHHHHHHHHH----HHH-H-h----hHhhHHhHHHHHHHH----HHHHHHHHHHHHhc-----CCHHHH
Q 017532 133 LSNRQVGLDRFYELLDFVREK----LAR-K-L----AEKLEESVKSWKKRE----IFVLNCLIGYHLSS-----KEYNVC 193 (370)
Q Consensus 133 ~g~~~~al~~l~~ll~~~~~~----~~~-~-~----~~~~~~~~~~~~~~~----~~~~~~la~~~~~~-----g~~~~A 193 (370)
.++..+|+..+...+...... +.. . . ......++..++... ..+++.+|.++... +++++|
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 577788888777654321100 100 0 0 122344555554443 67888999999987 999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH--
Q 017532 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-- 268 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-- 268 (370)
+.+|+++++.+ ++.+++.+|.++...| ++++|+.+|+++.+. .+ ..+++++|.++..
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----------~~----~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----------GE----KAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----------TC----HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----------CC----HHHHHHHHHHHHcCC
Confidence 99999999864 4788999999999977 899999999999963 12 4568889999999
Q ss_pred --cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 269 --GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 269 --~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
.+++++|+.+|+++++.+ ++.+++++|.++.. .+++++|+..|+++++.+|+........++++.++.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 999999999999999864 68999999999999 899999999999999999652222777888888876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=107.92 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=101.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
.+ .++..+..+|.++...|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..|++++
T Consensus 5 ~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 5 KS-PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------------AVYYTNRALCYLKMQQPEQALADCRRAL 70 (137)
T ss_dssp -C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45 678899999999999999999999999999765442 5678899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHH
Q 017532 284 ERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA--LNETLVVNLCSM 336 (370)
Q Consensus 284 ~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~~~nl~~l 336 (370)
..+|+++.+++++|.++...|++++|+..|+++++.+|+.. ....+...+..+
T Consensus 71 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988721 124444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-13 Score=102.45 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..+..+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++|+..|+++++.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 4567777888888888888888888887654331 445677888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.+++++|.++...|++++|++.++++++.+|++ ..+..+++.+.
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 116 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN---PQLKEGLQNME 116 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHhh
Confidence 88888888888888888888888888888888876 56666666553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=110.36 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
+.++..+|.++...|++++|+..+++++...+. .+ ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------ 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence 467789999999999999999999999987551 11 2477899999999999999999999999987663
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY------NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.++.....++.++|.++...|++++|+..|+++++..+ ....++.++|.++...|++++|++.++++++...+
T Consensus 83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 23333377889999999999999999999999997732 22468899999999999999999999999987543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-13 Score=102.36 Aligned_cols=113 Identities=22% Similarity=0.197 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...++.+|.++...|++++|++.|+++++..+.. ..++..+|.++...|++++|+..|++++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 4455555666666666666666666665432221 234455566666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.+++++|.++...|++++|+..++++++.+|+. ..+..+++.++
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 121 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGNAK 121 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHH
Confidence 66666666666666666666666666666666654 45555555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-13 Score=108.40 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..+..+|.++...|++++|+..|++++++.+.. ..++.++|.++...|++++|+..|++++..+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4677899999999999999999999999764432 567888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
++.+++++|.++...|++++|++.|+++++.+|+. .....++.....+...+..++...+....
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999999999999999999999999987 55554444443322333445555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=105.20 Aligned_cols=117 Identities=24% Similarity=0.192 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++|+..|++++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------------AVYFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 456788999999999999999999999999764432 5568889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
|+++.+++++|.++...|++++|+..++++++.+|+. ....++++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN---ETYKSNLKIAELK 126 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 7788888888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=120.15 Aligned_cols=213 Identities=8% Similarity=-0.019 Sum_probs=160.3
Q ss_pred HcCChHHHHHHHHHhhhccccCCchHHHHHHHHH------HHHHhhhcCHHHHHHHhhhcCCCCCCCCccccc-CCCCCC
Q 017532 40 TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYN------TLALMKLRRFDEAQQELDSLEDFNSSGYQYETY-PHIYPN 112 (370)
Q Consensus 40 ~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~------~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~-~~~~~~ 112 (370)
..+++..|...+.++... +|.....|...- ...|.+++++.+++..+.....+.+..+-.... ..+|
T Consensus 18 ~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y-- 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY-- 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT--
T ss_pred cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc--
Confidence 589999999999998654 587544444321 467888999999998888887776422211111 0000
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
|+..-.+..-. .+...++..+...|+|++
T Consensus 92 ---------------------~~~~~~v~~r~------------------------------dl~LayA~~L~~~g~y~e 120 (282)
T 4f3v_A 92 ---------------------GDITYPVTSPL------------------------------AITMGFAACEAAQGNYAD 120 (282)
T ss_dssp ---------------------CCCEEECSSHH------------------------------HHHHHHHHHHHHHTCHHH
T ss_pred ---------------------cccccccCCHh------------------------------HHHHHHHHHHHHCCCHHH
Confidence 11111110000 122345667888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|...|+.++..+| .+. ..+.+|.++++.|++++|+.+|+++.. ..+|.....+++++|.++...|++
T Consensus 121 A~~~l~~~~~~~p-~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-----------~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 121 AMEALEAAPVAGS-EHL-VAWMKAVVYGAAERWTDVIDQVKSAGK-----------WPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHTSSCCTTC-HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG-----------CSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCC-chH-HHHHHHHHHHHcCCHHHHHHHHHHhhc-----------cCCcccHHHHHHHHHHHHHHCCCH
Confidence 9999999999888 777 889999999999999999999987753 224443356889999999999999
Q ss_pred HHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 273 VSAVREYEECIERD--YN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 273 ~eA~~~~~~~l~~~--p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
++|+.+|++++... |. .+.+++++|.++..+|+.++|+..|++++..+|+
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999998654 55 5679999999999999999999999999999997
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=126.37 Aligned_cols=131 Identities=7% Similarity=-0.169 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..+++++..+| +........+..+...|+.++|+..|++++++.|++
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----------- 218 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----------- 218 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-----------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-----------
Confidence 46788999999999999999999999999999 777777777888889999999999999999765542
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND--IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~--~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
..+++++|.++...|++++|+..|++++..+|++ ..++.+++.++...|+.++|+..|++++.
T Consensus 219 --~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 219 --AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6678999999999999999999999999999998 89999999999999999999999999875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-13 Score=119.77 Aligned_cols=238 Identities=10% Similarity=-0.020 Sum_probs=176.2
Q ss_pred ChHhHHHHHHcCCh-HHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhc--CHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 31 DLASLQDLATRGSW-RTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR--RFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 31 ~~~~l~~l~~~g~~-~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~--~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
....+..+.++|.+ ++|++++++++.. +|.. .+.|.+|..++..++ ++++++..++.+...++-.+
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~----nP~~-~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------ 103 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINE----LASH-YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------ 103 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTC-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CcHH-HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------
Confidence 34567777888888 5899999997654 6874 667778899999999 99999999999975553221
Q ss_pred CCCCCCCCcccchhHHHH-HHHcCccc---CCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 108 HIYPNRTGSMVPFSLRWL-YAVLPIKL---SNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l-~a~~~~~~---g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
..|..|-. ...+.... ++..++++.+..++...+ .... +++.++.+
T Consensus 104 ----------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p------------kny~--------aW~~R~~v 153 (306)
T 3dra_A 104 ----------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP------------KNHH--------VWSYRKWL 153 (306)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT------------TCHH--------HHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC------------CCHH--------HHHHHHHH
Confidence 23333322 21111122 455555554444442221 1223 33456667
Q ss_pred HHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 184 HLSSKEYN--VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 184 ~~~~g~~~--~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+...|+++ +++..+.++++.+| .+..+|+..+.+....|+ ++++++++++++.+.+.+
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------------- 219 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------------- 219 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-------------
T ss_pred HHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-------------
Confidence 77778888 99999999999999 999999999999999887 899999999999765543
Q ss_pred HHHHHhHHHHHHHcCCHHHH-HHHHHHHHhhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSA-VREYEECIERD---YNDIVAINNKALCLMYLRDLSDSIKVLENALE-RVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA-~~~~~~~l~~~---p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~-~~p~~ 323 (370)
..+|..++.++...|+..++ .+.+++++.++ |.++.++..+|.++...|+.++|+++|+.+.+ .+|-.
T Consensus 220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence 56788899999999986664 45677777766 88999999999999999999999999999987 68864
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-13 Score=101.45 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..|++++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----------- 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----------
Confidence 56788999999999999999999999999999 899999999999999999999999999999764432
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
...+..+|.++...|++++|+..|++++..+|+++.++.+++.++...|
T Consensus 77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999999999999999999987765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-12 Score=100.98 Aligned_cols=134 Identities=20% Similarity=0.153 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
.+++.+|.++...|++++|+..|+++++..+.. ...+..+|.++...|++++|+..|++++..+|.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 467889999999999999999999999753331 4567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+.+++++|.++...|++++|++.+++++...|.. ...+++++.+|.. .+..+....++.......|+
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH--HccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999987 7788899998874 44467777777766665554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-12 Score=115.73 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=127.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP------ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
...+..+...|+|++|+..++++++..+ ... ..++.+|.++...|++++|+.+|++++.+.... .+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~ 150 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-------ID 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-------SC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-------Cc
Confidence 4566788899999999999999999877 443 335678999999999999999999999765442 12
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECI---ERDYNDI----VAINNKALCLMYLRDLSDSIKVLENALERVPT-- 322 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l---~~~p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~-- 322 (370)
+.....++.++|.+|...|++++|+.+|++++ +..|++. .+++|+|.++...|++++|+.+++++++..++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 22226688999999999999999999999999 4456643 68999999999999999999999999987543
Q ss_pred -cchhHHHHHHHHHHHHhccC
Q 017532 323 -VALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 323 -~~~~~~~~~nl~~lyel~~~ 342 (370)
......+.++++.+|....+
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHcCC
Confidence 12235778999999986544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=113.12 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR------------------GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
+..+..+|..++..|+|++|+..|++++.. +| ....+++++|.++..+|++++|+.+|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456678999999999999999999999998 55 56688999999999999999999999999
Q ss_pred HHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCH
Q 017532 236 EEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-VAINNKALCLMYLRDL 306 (370)
Q Consensus 236 ~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-~~~~nla~~~~~~g~~ 306 (370)
+++.+.. ..+++.+|.+++..|++++|+..|+++++++|++. .+...++.+....++.
T Consensus 90 l~~~p~~-------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 90 LKREETN-------------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcc-------------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9765442 67789999999999999999999999999999998 6677777766555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-13 Score=121.01 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=130.5
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~- 208 (370)
...|+.++|+..+...+...... . . . ......+..+|.++...|++++|+..+++++...+. .+
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~------~---~-~----~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYH------P---E-F----QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCC------H---H-H----HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHhhHHHHHHHHHHHhccccCC------h---H-H----HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 55677777777666654311100 0 0 0 011244556888999999999999999999986541 22
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 ---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++..+|.+|...|++++|+.+|+++++...... ...+.. ..++.++|.+++.+|++++|+++|++++++
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~-~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----DNEEFD-VKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----CCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----cchhHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999998766531 223444 788999999999999999999999999988
Q ss_pred CCCC------HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC
Q 017532 286 DYND------IVAINNKALCLMYLRD-LSDSIKVLENALERV 320 (370)
Q Consensus 286 ~p~~------~~~~~nla~~~~~~g~-~~~A~~~l~~al~~~ 320 (370)
.+.. ..+++++|.++..+|+ +++|+++|++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6433 7899999999999995 699999999998763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-13 Score=100.95 Aligned_cols=112 Identities=16% Similarity=0.050 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|++++|+..+++++...| .++.++..+|.++...|++++|+..|++++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 71 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------------ 71 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------------
Confidence 5667899999999999999999999999999 999999999999999999999999999999764432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
..++.++|.++...|++++|+..|+++++.+|+++.++.+++.+.
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 556888999999999999999999999999999999999888764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-13 Score=105.79 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|..+...|++++|+.+|++++++.++ ++.. ..++.++|.++...|++++|+..|++++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---------PQDQ-AVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---------HHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---------chHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 67788999999999999999999999999964322 3223 6778899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|+++.+++++|.++...|++++|+..|+++++.+|++ ..+...+..+.+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN---KVFQEALRNISG 144 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987 667777776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-14 Score=112.89 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL-------DPI-----LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
+..+.++|..+...|+|++|+..|+++++..| . +.. +|+++|.++..+|++++|+.+|++++++...
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p-~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 45667899999999999999999999999999 6 443 8999999999999999999999999987221
Q ss_pred CCccCCccchHHHHHHHH----HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 017532 242 GKFEDGLLSEVEFRNLVS----RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNK 296 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~----~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nl 296 (370)
. ...+|+. ..+| +++|.++..+|++++|+..|+++++++|++.....-+
T Consensus 90 ~-----~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 90 R-----GELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp H-----CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred c-----ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 0 0235555 7778 9999999999999999999999999999876544333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=127.93 Aligned_cols=145 Identities=9% Similarity=-0.016 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|+|++|+..|++++..+| .++.+++.+|.++..+|++++|+..|++++++. |+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------p~~ 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD------------GQS 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------------TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------CCC
Confidence 4567899999999999999999999999999 999999999999999999999999999999543 333
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HH--------------------------HHHHHHHHHHh
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-----VA--------------------------INNKALCLMYL 303 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-----~~--------------------------~~nla~~~~~~ 303 (370)
..++.++|.++...|++++|+..|+++++++|++. .+ ...++. +..
T Consensus 72 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~ 148 (281)
T 2c2l_A 72 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIA 148 (281)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHH
Confidence 66788999999999999999999999999988652 11 111222 247
Q ss_pred CCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 304 RDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 304 g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|++++|++.++++++.+|+. ..+...+..++.
T Consensus 149 ~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~ 180 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDD---GHIRAQQACIEA 180 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCH---HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccch---hhhhhHHHHHHH
Confidence 89999999999999999986 555566666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=106.24 Aligned_cols=101 Identities=9% Similarity=-0.147 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
++.+|..+...|++++|+..|+++++.+| .++.+++.+|.++...|++++|+..|++++++.|+. .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------------~ 85 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-------------I 85 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------H
Confidence 35678889999999999999999999999 999999999999999999999999999999775542 5
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
.++.++|.++...|++++|+..|+++++.+|++..
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 67889999999999999999999999999998653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=125.13 Aligned_cols=138 Identities=12% Similarity=0.016 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 175 FVLNCLIGYHLSSK---EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV----GDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 175 ~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
.+++.+|.+|...| ++++|+..|+++.+.++ .....++.+|.+|... +++++|+.+|+++. +..
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~----- 247 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY----- 247 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-----
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-----
Confidence 45666666666666 66777777777776666 6666666666666544 56666666666665 221
Q ss_pred ccchHHHHHHHHHhHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHh
Q 017532 248 LLSEVEFRNLVSRNKALI-Y--LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR-----DLSDSIKVLENALER 319 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~-~--~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-----~~~~A~~~l~~al~~ 319 (370)
..+++++|.+ + ...+++++|+.+|+++++. .++.+++++|.+|. .| ++++|+..|+++.
T Consensus 248 --------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 248 --------PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp --------THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred --------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 3345556655 3 3456666666666666543 35666666666655 44 6666666666665
Q ss_pred CCCcchhHHHHHHHHHHHH
Q 017532 320 VPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 320 ~p~~~~~~~~~~nl~~lye 338 (370)
|.+ ....++|+.+|.
T Consensus 315 -~g~---~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 315 -GRE---VAADYYLGQIYR 329 (452)
T ss_dssp -TTC---HHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHH
Confidence 444 455666666665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=103.14 Aligned_cols=106 Identities=16% Similarity=0.051 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+| .+...+..+|.++...|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..|++++
T Consensus 2 ~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 2 VD-QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-------------SKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp CC-SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45 677788899999999999999999999999765432 4567889999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCc
Q 017532 284 ERDYN--DIVAINNKALCLMYL-RDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 284 ~~~p~--~~~~~~nla~~~~~~-g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+|. +..+++++|.++... |++++|++++++++...|..
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 999999999999999 99999999999999999874
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-15 Score=141.09 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|+|++|+..|+++++.+| .+..+++.+|.++.++|++++|+++|++++++.++ .
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------~ 73 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------------Y 73 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------C
Confidence 3455677888999999999999999999999 99999999999999999999999999999975433 2
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHhCC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC--LMYLRDLSDSIKVLE-----------NALERVP 321 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~--~~~~g~~~~A~~~l~-----------~al~~~p 321 (370)
..++.++|.++..+|++++|++.|+++++++|++..++.+++.+ +...|++++|++.++ +++..+|
T Consensus 74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~ 152 (477)
T 1wao_1 74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 152 (477)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccc
Confidence 56788999999999999999999999999999999999999998 888999999999999 8888887
Q ss_pred Cc
Q 017532 322 TV 323 (370)
Q Consensus 322 ~~ 323 (370)
+.
T Consensus 153 ~~ 154 (477)
T 1wao_1 153 EY 154 (477)
T ss_dssp TC
T ss_pred cc
Confidence 64
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=101.95 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND- 289 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~- 289 (370)
.++.+|.++...|++++|+..|+++++..+++ +.. ..+++.+|.+++..|++++|+..|++++..+|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---------VYT-PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---------TTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---------ccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 46788999999999999999999999765542 111 3578889999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 --IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 --~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+++++|.++...|++++|+..|+++++..|+.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999999999999987
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-13 Score=129.09 Aligned_cols=129 Identities=9% Similarity=0.088 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
..++.+|..++..|+|++|+..|+++++..| .+ ..+++++|.++.++|++++|+.+|++++++.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5667899999999999999999999999999 66 6899999999999999999999999999765
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV-LENAL 317 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~-l~~al 317 (370)
+++ ..+++++|.+++.+|++++|+..|+++++++|++..++.+++.++...|++++|... +.+++
T Consensus 348 p~~-------------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SAN-------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred Ccc-------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 677899999999999999999999999999999999999999999999999988754 44443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-13 Score=104.79 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|.++...|+|++|+..|++++..+| .++.++..+|.++...|++++|+..|++++++.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----------- 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-----------
Confidence 35677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHh
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-----DIVAINNKALCLMYL 303 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-----~~~~~~nla~~~~~~ 303 (370)
..++.++|.++...|++++|+..|+++++.+|+ +..+...+..+....
T Consensus 77 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 77 --VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999987 666666666655443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-11 Score=111.83 Aligned_cols=167 Identities=8% Similarity=-0.082 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 177 LNCLIGYHLSSK--EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD-LEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 177 ~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
++.++.++...+ ++++++.++.++++.+| .+..+|+..+.+....|. +++++++++++++..+.+
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N----------- 178 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN----------- 178 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC-----------
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC-----------
Confidence 345556666667 59999999999999999 999999999999999999 699999999999765543
Q ss_pred HHHHHHHhHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----------CCHHH
Q 017532 254 FRNLVSRNKALIYLVG--------------KDYVSAVREYEECIERDYNDIVAINNKALCLMYL-----------RDLSD 308 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~--------------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~-----------g~~~~ 308 (370)
..+|.+++.++... +.++++++++.+++..+|+|..+|+.+.-++... +.+++
T Consensus 179 --~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 179 --YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp --HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 56788899998877 6799999999999999999999997544444433 46899
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHh-ccCCchhhHHHHHHHHhhhCC
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSMYEL-AYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~lyel-~~~~~~~~~~~ll~~~~~~~~ 360 (370)
+++.++++++..|++ .+.+..++.+... ...+..+.-..++.++....|
T Consensus 257 el~~~~elle~~pd~---~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 257 ELESCKELQELEPEN---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhCccc---chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 999999999999987 5555555543322 223334555666666666655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.7e-13 Score=111.63 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR------GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
..++..+|.++...|++++|+..+++++.. .+ ....++..+|.++...|++++|+.+|++++++.+..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----- 99 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT-AEHRALHQVGMVERMAGNWDAARRCFLEERELLASL----- 99 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----
Confidence 356778999999999999999999999883 23 345678999999999999999999999999987653
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDI----VAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
..++.....++.++|.++...|++++|+.+|++++... ..+. .++.++|.++...|++++|+..+++++++..
T Consensus 100 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 100 -PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 22342337889999999999999999999999999763 2222 4578999999999999999999999998744
Q ss_pred C
Q 017532 322 T 322 (370)
Q Consensus 322 ~ 322 (370)
.
T Consensus 179 ~ 179 (203)
T 3gw4_A 179 E 179 (203)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-12 Score=106.10 Aligned_cols=161 Identities=11% Similarity=0.045 Sum_probs=123.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
+..|++++|...++.+.. +|.....++..+|.++...|++++|+.+|++++.+.... ...+.. ..++.++|.
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~-~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS------GDHTAE-HRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------CCHHHH-HHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc------CCcHHH-HHHHHHHHH
Confidence 457999999996666554 342667889999999999999999999999999987764 234444 888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---cchhHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIER---DYND----IVAINNKALCLMYLRDLSDSIKVLENALERVPT---VALNETLVVNLC 334 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~---~p~~----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~~~nl~ 334 (370)
++...|++++|+..|+++++. .+++ ..+++++|.++...|++++|+..+++++...+. .......+.+++
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999988 4433 467899999999999999999999999976432 212234567899
Q ss_pred HHHHhccCCchhhHHHHHHHH
Q 017532 335 SMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~ 355 (370)
.+|.... ..++....++..
T Consensus 155 ~~~~~~g--~~~~A~~~~~~a 173 (203)
T 3gw4_A 155 DLAQQEK--NLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHCc--CHHHHHHHHHHH
Confidence 8887543 355555555433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-12 Score=116.44 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=124.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI------LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..+..++..|+|++|+..+++++...+ ..+. .+..+|.++...|++++|+.+|++++.+.... .+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-------~~~ 151 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-------IDV 151 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-------SCT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-------ccH
Confidence 446678889999999999999999777 5543 23458999999999999999999999864442 111
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIER-------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV-- 323 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~-- 323 (370)
.....++.++|.+|...|++++|+.+|+++++. .+....+++|+|.++...|++++|+++++++++..+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 122567899999999999999999999999953 12334689999999999999999999999999886442
Q ss_pred -chhHHHHHHHHHHHHhcc
Q 017532 324 -ALNETLVVNLCSMYELAY 341 (370)
Q Consensus 324 -~~~~~~~~nl~~lyel~~ 341 (370)
.....++++++.+|....
T Consensus 232 ~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 233678899999998644
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=100.50 Aligned_cols=122 Identities=9% Similarity=0.111 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|.++...|++++|+..+++++...| .++.++..+|.++...|++++|+.+|++++.+.+... ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-----EDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-----TCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-----hhHHHH
Confidence 5677899999999999999999999999999 8999999999999999999999999999998876531 122222
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
..++.++|.++...|++++|+..|+++++.+| ++.....++.+....+
T Consensus 79 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 79 -AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999988 6888888877765544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=109.16 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
..++.+|.++...|++++|+..|++++ ..+ ..++.++|.++...|++++|+..|++++..+|++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~------------~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ------------DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS------------SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------------CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 456788999999999999999999986 112 4578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc-------------hhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVA-------------LNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~-------------~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
+.+++++|.++...|++++|++.|+++++..|++. ....++++++.+|... +..+.....++...
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al 148 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK--EEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988752 1237889999998754 44677777777666
Q ss_pred hhCCC
Q 017532 357 RVAPD 361 (370)
Q Consensus 357 ~~~~d 361 (370)
...|+
T Consensus 149 ~~~p~ 153 (213)
T 1hh8_A 149 SMKSE 153 (213)
T ss_dssp TTCCS
T ss_pred HcCcc
Confidence 65554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=121.19 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc----cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF----EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~----~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..+..+|..++..|++++|+..|++++++.+.... ......+|.. ..++.++|.+++.+|++++|+.+|++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44667788888888888888888888765432100 0000145665 788999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
+|+++.+++++|.++..+|++++|++.|+++++++|++ ..+..+++.++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~---~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED---KAIQAELLKVKQKI 354 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 77888888887643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=127.82 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..++..|+|++|+..|++++...| .+. .+...|+++++...+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~--------~~~~~~~~~~~~~~l~--------------------- 229 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-DDF--------MFQLYGKYQDMALAVK--------------------- 229 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-HHH--------HHTCCHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cch--------hhhhcccHHHHHHHHH---------------------
Confidence 4566889999999999999999999999988 443 1223344443332210
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++.++|.+++..|+|++|+.+|+++++++|++..+++++|.++..+|++++|+..|+++++++|++ ..+..+|.
T Consensus 230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~---~~a~~~L~ 305 (338)
T 2if4_A 230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD---KAIRRELR 305 (338)
T ss_dssp -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHH
Confidence 23456677777777777777777777777777777777777777777777777777777777777765 56666666
Q ss_pred HHHHhccC
Q 017532 335 SMYELAYV 342 (370)
Q Consensus 335 ~lyel~~~ 342 (370)
.+......
T Consensus 306 ~l~~~~~~ 313 (338)
T 2if4_A 306 ALAEQEKA 313 (338)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66554333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-13 Score=102.15 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=81.2
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
.+|++++|+.+|++++++. ..+|+. ..++.++|.+++..|++++|+..|+++++.+|+++.+++++|.++
T Consensus 2 ~~g~~~~A~~~~~~al~~~---------~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---------LQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSC---------CCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---------CCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4689999999999999421 115766 788999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCc
Q 017532 301 MYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 301 ~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...|++++|+..|+++++..|++
T Consensus 72 ~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999986
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-12 Score=101.83 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..++.+|..+...|++++|+..|+++++..| .+ ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------- 98 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--------- 98 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---------
Confidence 3456788899999999999999999999999 76 7889999999999999999999999999764432
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
..++..+|.++...|++++|+.+|+++++.+|++..++..++.+..
T Consensus 99 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 99 ----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 5668889999999999999999999999999999999888877653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-12 Score=114.73 Aligned_cols=258 Identities=12% Similarity=0.110 Sum_probs=173.5
Q ss_pred CCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 29 VPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 29 ~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
|...=.++..+=.|+|..+|+-..+. .|.+......+...+++.+|+++.. +.+
T Consensus 14 ~~~lf~ikn~fy~G~yq~~i~e~~~~-------~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~---------- 67 (310)
T 3mv2_B 14 PMDYFNIKQNYYTGNFVQCLQEIEKF-------SKVTDNTLLFYKAKTLLALGQYQSQ---------DPT---------- 67 (310)
T ss_dssp -CCTHHHHHHHTTTCHHHHTHHHHTS-------SCCCCHHHHHHHHHHHHHTTCCCCC---------CSS----------
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHcCCCccC---------CCC----------
Confidence 44555889999999999999844432 1222234444556788888888741 100
Q ss_pred CCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 188 (370)
. ..--.++++...+ .+. ++..+.+++... ... ..++..+|.++...|
T Consensus 68 -----~--~~~~a~~~la~~~---~~~---a~~~l~~l~~~~-------~~~-------------~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 68 -----S--KLGKVLDLYVQFL---DTK---NIEELENLLKDK-------QNS-------------PYELYLLATAQAILG 114 (310)
T ss_dssp -----S--TTHHHHHHHHHHH---TTT---CCHHHHHTTTTS-------CCC-------------HHHHHHHHHHHHHHT
T ss_pred -----C--HHHHHHHHHHHHh---ccc---HHHHHHHHHhcC-------CCC-------------cHHHHHHHHHHHHcC
Confidence 0 0111234333332 122 555554443210 000 123357888999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 189 EYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
++++|+.++++.+..+| ..+..++..++.+++++|+++.|.+.++++.+..++. .-.+.........|.+.+
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~-------~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT-------VSGDNEMILNLAESYIKF 187 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-------cccchHHHHHHHHHHHHH
Confidence 99999999999998875 3677888999999999999999999999998643210 000111333344465577
Q ss_pred HcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------CCcchhHHHHHHH
Q 017532 268 VGK--DYVSAVREYEECIERDYN--DIVAINNKALCLMYLRDLSDSIKVLENALERV----------PTVALNETLVVNL 333 (370)
Q Consensus 268 ~~g--~~~eA~~~~~~~l~~~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~----------p~~~~~~~~~~nl 333 (370)
..| ++.+|...|+++....|+ .+..+.| ++..+|++++|.+.++.+++.. |++ ..++.|+
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~---~~~LaN~ 261 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK---PTFLANQ 261 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH---HHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC---HHHHHHH
Confidence 667 999999999999888886 3445555 8999999999999999888874 555 7888899
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.+++..... ...+++.++....|++
T Consensus 262 i~l~~~lgk----~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 262 ITLALMQGL----DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHTTC----TTHHHHHHHHHTTCCC
T ss_pred HHHHHHhCh----HHHHHHHHHHHhCCCC
Confidence 888775432 4467788888888876
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-12 Score=99.62 Aligned_cols=118 Identities=8% Similarity=-0.129 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.++.+|..++..|+|++|+..|+++++..| .++ .+++.+|.++...|++++|+.+|+++++..++. +
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------D 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------T
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---------c
Confidence 456889999999999999999999999999 777 789999999999999999999999999875552 1
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
.. ..++..+|.++...|++++|+..|++++..+|+++.+...+..+..-.+
T Consensus 74 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 74 KA-AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp TH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 11 4567889999999999999999999999999999877665555443333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-11 Score=112.67 Aligned_cols=175 Identities=10% Similarity=-0.026 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..++..++.++...|++++|+..+++++...|..+. .++..+|.++...|++++|+..+++++++.+..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 86 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------- 86 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-------
Confidence 356677888899999999999999999998873333 256888999999999999999999999887763
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--------YNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.++.....++.++|.++...|++++|+..|+++++.. |....++.++|.++...|++++|+..+++++...|
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 2333336677889999999999999999999999874 33456788999999999999999999999999887
Q ss_pred Ccc--hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 322 TVA--LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 322 ~~~--~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
... .....+.+++.++... +..++...+++....
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLAR--GDLDNARSQLNRLEN 202 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 632 1235677888888754 346677777665543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=99.56 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
.+..+..+|.++...|++++|+.+|++++...+.. ..++.++|.++...|++++|+.+|++++..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 35678899999999999999999999999764432 55678899999999999999999999999988
Q ss_pred CC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 288 ND-------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 288 ~~-------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
.+ ..+++++|.++...|++++|++.|+++++..|+ ......+..++..
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~ 124 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT----PDVLKKCQQAEKI 124 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHH
Confidence 77 899999999999999999999999999999985 5667777776653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-11 Score=109.17 Aligned_cols=151 Identities=8% Similarity=-0.045 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHhhcCCcc
Q 017532 175 FVLNCLIGYHLSSK--EYNVCFDLMNESIGRGNGLDPILVSKLGFIQ----MQV---GDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 175 ~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.+++.++.++...| ++++++..++.++..+| .+..+|+..+.+. ... +++++++.+++++++..+++
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn--- 143 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN--- 143 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---
Confidence 45567778888888 99999999999999999 9999999999999 777 89999999999999765553
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHH
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYV--SAVREYEECIERDYNDIVAINNKALCLMYLRD------LSDSIKVLENAL 317 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~--eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~------~~~A~~~l~~al 317 (370)
-.+|..++.+....|+++ ++++.++++++.+|.|..+|++++.++...|+ ++++++++++++
T Consensus 144 ----------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 144 ----------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213 (306)
T ss_dssp ----------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 678999999999999999 99999999999999999999999999999988 999999999999
Q ss_pred HhCCCcchhHHHHHHHHHHHHhccC
Q 017532 318 ERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 318 ~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
..+|++ .++++++..++.....
T Consensus 214 ~~~p~n---~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 214 VKCPQN---PSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHCSSC---HHHHHHHHHHHHHTTC
T ss_pred HhCCCC---ccHHHHHHHHHHhcCC
Confidence 999998 8888888888765443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=121.88 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIG----------------RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
+..+..+|..++..|+|++|+..|+++++ ..| .+..+++++|.++.++|++++|+.+|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 46678999999999999999999999998 666 7778999999999999999999999999996
Q ss_pred HhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 017532 238 MLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV 312 (370)
Q Consensus 238 l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~ 312 (370)
+. |+. ..+++.+|.++...|++++|+..|+++++++|++..++.+++.++...++.+++.+.
T Consensus 302 ~~------------p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 ID------------PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TC------------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hC------------chh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 333 677899999999999999999999999999999999999999999999998887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=120.51 Aligned_cols=149 Identities=8% Similarity=0.018 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLSSKE----------YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG--DLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~a~~l~~~ 241 (370)
..+++.++.++...|+ +++++..++++++.+| .+..+|+..+.+..+.| ++++|++.+++++++.+.
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 3566677777777777 9999999999999999 99999999999999999 779999999999976554
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------------CCH
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERDYNDIVAINNKALCLMYL--------------RDL 306 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~--------------g~~ 306 (370)
+ ..+|..+|.+....| .++++++++.++++.+|.+..+|++++.++... +++
T Consensus 142 N-------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~ 208 (567)
T 1dce_A 142 N-------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL 208 (567)
T ss_dssp C-------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred c-------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHH
Confidence 3 678899999999999 999999999999999999999999999999885 678
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 307 SDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 307 ~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
+++++++.+++..+|++ ..+++++.-++..
T Consensus 209 ~eel~~~~~ai~~~P~~---~saW~y~~~ll~~ 238 (567)
T 1dce_A 209 LKELELVQNAFFTDPND---QSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHHHHHHHHHCSSC---SHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhCCCC---ccHHHHHHHHHhc
Confidence 99999999999999998 8899998888753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-11 Score=125.59 Aligned_cols=250 Identities=11% Similarity=0.013 Sum_probs=165.9
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccc------------------cCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSL------------------LTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLED 95 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~------------------~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~ 95 (370)
....++..|.|++|+.+|+++..... ....++..+|..+ +.++...|++++|...+.+..+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqL-AKAql~~G~~kEAIdsYiKAdD 1133 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQL-AKAQLQKGMVKEAIDSYIKADD 1133 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCHHHHHHHHHhcCC
Confidence 45556677777777777666311000 0011222344443 7788899999999998877633
Q ss_pred CCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-----H-HHH-hhHhhHHhHHH
Q 017532 96 FNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-----L-ARK-LAEKLEESVKS 168 (370)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-----~-~~~-~~~~~~~~~~~ 168 (370)
.+ . ..++ +......|+.++++..|.......+.. + ... +.+...+....
T Consensus 1134 ~s---a-------------------y~eV--a~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1134 PS---S-------------------YMEV--VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred hH---H-------------------HHHH--HHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH
Confidence 21 1 1222 333467799999998887654332111 0 000 11122221112
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 169 WKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
........+..+|..+...|+|++|+.+|..+ ..|..+|.++.++|++++|++.+.++..
T Consensus 1190 I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n----------- 1249 (1630)
T 1xi4_A 1190 INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS----------- 1249 (1630)
T ss_pred HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-----------
Confidence 22222345668999999999999999999986 3688899999999999999999999952
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHH
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNET 328 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 328 (370)
..+|.+.+.+++..|+|..|..+... +.. ++.-+..++..|...|.+++|+..|++++.++|.. -.
T Consensus 1250 -------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH---~g 1315 (1630)
T 1xi4_A 1250 -------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAH---MG 1315 (1630)
T ss_pred -------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH---hH
Confidence 45678888888899999999887764 433 34455578888889999999999999999988765 55
Q ss_pred HHHHHHHHHHhccC
Q 017532 329 LVVNLCSMYELAYV 342 (370)
Q Consensus 329 ~~~nl~~lyel~~~ 342 (370)
+.-.|+.+|...+.
T Consensus 1316 mftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1316 MFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHHHHHhCCH
Confidence 55677777765433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-13 Score=103.15 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 187 SKEYNVCFDLMNESIGR---GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
.|++++|+..|+++++. +| .++.++..+|.++...|++++|+.+|++++++.|+. ..++.++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~l~ 68 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-------------QALRVFYA 68 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------hHHHHHHH
Confidence 58999999999999999 47 778899999999999999999999999999765542 56788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS 307 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~ 307 (370)
.++...|++++|+..|+++++.+|+++.+......+....+.++
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987665555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=105.25 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=82.2
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY----------VSAVREYEECIERDYND 289 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~----------~eA~~~~~~~l~~~p~~ 289 (370)
.+.+.+++|++.|++++++.|+. ..+++++|.++...+++ ++|+..|+++++++|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-------------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 35678999999999999765543 67899999999999876 59999999999999999
Q ss_pred HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCc
Q 017532 290 IVAINNKALCLMYLR-----------DLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 ~~~~~nla~~~~~~g-----------~~~~A~~~l~~al~~~p~~ 323 (370)
..+++++|.+|...| ++++|+++|++|++++|++
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 999999999999885 8999999999999999987
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-13 Score=121.92 Aligned_cols=122 Identities=15% Similarity=0.064 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...+..+|..++..|++++|+.+|++++.+.+. . . .+...|++.++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~------------~-~--------~~~~~~~~~~~~~~l~-------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD------------D-F--------MFQLYGKYQDMALAVK-------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH------------H-H--------HHTCCHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc------------c-h--------hhhhcccHHHHHHHHH--------
Confidence 456788899999999999999999999965332 1 1 1234556666655442
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
..+++|+|.++..+|++++|+..|+++++.+|++ ..++++++.+|... +..+.+...++...+..|++.+.
T Consensus 230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---PKALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTT--TCHHHHHHHHHHTTC--------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHH
Confidence 2488999999999999999999999999999988 88999999999754 44778888888777776666443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=113.59 Aligned_cols=151 Identities=11% Similarity=-0.058 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSK-EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV-G-DLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+++.++.++...| ++++++..++.++..+| .+..+|+..+.+.... + ++++++++++++++. +
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~------------d 155 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP------------D 155 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS------------C
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------------C
Confidence 34456667777778 59999999999999999 9999999999999998 8 999999999999954 3
Q ss_pred HHHHHHHHHhHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYV--------SAVREYEECIERDYNDIVAINNKALCLMYLRD-------LSDSIKVLENA 316 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~--------eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~-------~~~A~~~l~~a 316 (370)
|.. -.+|..++.+....|+++ ++++.++++++.+|.|..+|++++.++...++ ++++++++.++
T Consensus 156 pkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~a 234 (349)
T 3q7a_A 156 PKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKS 234 (349)
T ss_dssp TTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 333 678889999999999888 99999999999999999999999999999987 79999999999
Q ss_pred HHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 317 LERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 317 l~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
+..+|++ .++++++..++.-...
T Consensus 235 I~~~P~n---~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 235 IHLIPHN---VSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHTTC
T ss_pred HHhCCCC---HHHHHHHHHHHHhcCC
Confidence 9999998 8999998888875443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-11 Score=116.62 Aligned_cols=220 Identities=9% Similarity=-0.031 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh-------hcCHH-------HHHHHhhhcCC-CCCCCCcccccCCC
Q 017532 45 RTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK-------LRRFD-------EAQQELDSLED-FNSSGYQYETYPHI 109 (370)
Q Consensus 45 ~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~-------l~~~~-------~A~~~~~~~~~-l~~~~~~~~~~~~~ 109 (370)
+.|+..|++++.. +|.+...|+.+ +..+.+ .|+++ +|...+++... +.+ +
T Consensus 255 ~~a~~~y~~al~~----~p~~~~~w~~~-~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~--------- 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLV----LGHHPDIWYEA-AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-K--------- 319 (530)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHH-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-S---------
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-c---------
Confidence 4677888887543 57765555554 444443 68876 77887777753 221 0
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
+ ..+....+.+....|+.++|...+..++...+. .. ..++...+.++.+.|+
T Consensus 320 ------~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------~~--------~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 320 ------N---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----------DP--------TLVYIQYMKFARRAEG 371 (530)
T ss_dssp ------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----------CH--------HHHHHHHHHHHHHHHH
T ss_pred ------c---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----------Cc--------hHHHHHHHHHHHHhcC
Confidence 0 011111222223345555554444443321000 00 0123344444445555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFI-QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+++|..+|+++++..| .....+...+.+ +...|++++|...|+++++..|++ ..+|...|..+..
T Consensus 372 ~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-------------~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 372 IKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------------PEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHh
Confidence 5555555555555554 443333333333 223555555555555555443321 3344555555555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 269 GKDYVSAVREYEECIERDYNDIV----AINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~p~~~~----~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.|++++|...|++++...|.++. +|...+......|+.+.+..++.++++..|
T Consensus 438 ~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 438 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55555555555555555443322 444444444455555555555555555555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-11 Score=101.25 Aligned_cols=141 Identities=11% Similarity=-0.010 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 175 FVLNCLIGYHLSSK----EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 175 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
.+++.+|.+|.. + ++++|+.+|+++.+ + .++.+++.+|.+|.. .+++++|+.+|+++.+..+
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~------ 120 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--A-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE------ 120 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--T-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT------
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC------
Confidence 567789999888 7 99999999999976 4 678999999999998 8999999999999984211
Q ss_pred CccchHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKALCLMYL-R-----DLSDSIKVLENA 316 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~-g-----~~~~A~~~l~~a 316 (370)
.... ..++.++|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+..|+++
T Consensus 121 ----~~~~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 121 ----SDAA-VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp ----SHHH-HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred ----Ccch-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 1022 5678899999999 89999999999999998 77788999999999874 3 899999999999
Q ss_pred HHhCCCcchhHHHHHHHHHH
Q 017532 317 LERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 317 l~~~p~~~~~~~~~~nl~~l 336 (370)
++... .....++..+
T Consensus 195 ~~~g~-----~~A~~~l~~l 209 (212)
T 3rjv_A 195 CLEGF-----DTGCEEFDRI 209 (212)
T ss_dssp HHHTC-----HHHHHHHHHH
T ss_pred HHcCC-----HHHHHHHHHh
Confidence 99865 3444454443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-12 Score=113.00 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|..+...|++++|+..|++++++.+.. ..++.++|.++...|++++|+..|+++++++
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------------AVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999999999765442 5678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+++.+++++|.++...|++++|+..|+++++.+|+.
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999998864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-10 Score=103.21 Aligned_cols=147 Identities=8% Similarity=0.020 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhcC
Q 017532 175 FVLNCLIGYHLSSKE----------YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD--LEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 175 ~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~a~~l~~~~ 242 (370)
.+++.++.++...++ +++++.+++.++..+| .+..+|+..+.+....|+ +++++.+++++++..+.+
T Consensus 65 taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN 143 (331)
T 3dss_A 65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN 143 (331)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence 344445555544443 7899999999999999 999999999999999994 899999999999765543
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------------CCHH
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKD-YVSAVREYEECIERDYNDIVAINNKALCLMYL--------------RDLS 307 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~-~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~--------------g~~~ 307 (370)
-.+|..++.+....|. ++++++++.++++.+|.|..+|++++.++... +.++
T Consensus 144 -------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~ 210 (331)
T 3dss_A 144 -------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 210 (331)
T ss_dssp -------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred -------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHH
Confidence 6778899999999999 69999999999999999999999999999887 5699
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 308 DSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 308 ~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
++++++.+++..+|++ .++++.+.-++.
T Consensus 211 eEle~~~~ai~~~P~d---~SaW~Y~r~ll~ 238 (331)
T 3dss_A 211 KELELVQNAFFTDPND---QSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHSTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence 9999999999999998 777776665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-10 Score=118.18 Aligned_cols=243 Identities=15% Similarity=0.048 Sum_probs=155.2
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
-...+.++..|.+.+|+.+++++.-.+-...-+..+-....+.......++..+....++.. +
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~---d-------------- 1051 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY---D-------------- 1051 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc---c--------------
Confidence 44778888999999999999997532110000111222222223333445555555444322 0
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--hhHhhHHhHHHHHHH-HHHHHHHHHHHHHhcC
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--LAEKLEESVKSWKKR-EIFVLNCLIGYHLSSK 188 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g 188 (370)
.+ . .|.+....|.+++|+..|........ .+... ..+..+++.+...+- ...+++.+|..+...|
T Consensus 1052 ------~~---e--IA~Iai~lglyEEAf~IYkKa~~~~~-A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1052 ------AP---D--IANIAISNELFEEAFAIFRKFDVNTS-AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred ------HH---H--HHHHHHhCCCHHHHHHHHHHcCCHHH-HHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 00 0 23344667777888777766431111 11000 111222222222211 1678889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---------------CCccchHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE---------------DGLLSEVE 253 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~---------------~~~~~~p~ 253 (370)
++++|+..|.++ +++..+..+|.++.+.|++++|+++|+.+.+..++...+ -.......
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~ 1193 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 1193 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCC
Confidence 999999999886 778889999999999999999999999887654332000 00000000
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
. ...+...|..++..|+|++|+.+|.++ ..|..+|.++.++|++++|++.++++..
T Consensus 1194 n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1194 N-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 0 124567999999999999999999986 4788999999999999999999999933
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=102.06 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=105.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
+...|++++|+..|+++++..+.. ..++..+|.+++..|++++|+..|++++..+|+++.++.++|.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 86 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT 86 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346799999999999999764432 5678889999999999999999999999999999999999999
Q ss_pred H-HHHhCCH--HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 299 C-LMYLRDL--SDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 299 ~-~~~~g~~--~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
+ +...|++ ++|+..++++++.+|+. ..++++++.+|... +..+.....++.+....|++.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQ--ANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhCCCCc
Confidence 9 7899999 99999999999999987 78899999998754 447777777777777666653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-10 Score=111.43 Aligned_cols=165 Identities=10% Similarity=0.024 Sum_probs=128.8
Q ss_pred hHHhHHHHHHHH------HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHH
Q 017532 162 LEESVKSWKKRE------IFVLNCLIGYHLSS----KEYNVCFDLMNESIGRGNGLDPILVSKLGFI-Q--MQVGDLEGA 228 (370)
Q Consensus 162 ~~~~~~~~~~~~------~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~-~--~~~g~~~~A 228 (370)
..++++.++... +..++.+|.+|... +++++|+.+|+++. + .++.+++.+|.+ + ...|++++|
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P-GYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G-GSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C-CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 344555554443 44558899988765 79999999999998 7 889999999998 4 568999999
Q ss_pred HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 017532 229 KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-----DYVSAVREYEECIERDYNDIVAINNKALCLMY- 302 (370)
Q Consensus 229 ~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-----~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~- 302 (370)
+.+|+++.+. .+ ..+..++|.+|. .| ++++|+.+|+++. |.++.+.+++|.+|..
T Consensus 271 ~~~~~~Aa~~-----------g~----~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 271 MKYLDNGRAA-----------DQ----PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHHHHT-----------TC----HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-----------CC----HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC
Confidence 9999999852 12 456788999998 66 9999999999998 8999999999998887
Q ss_pred ---hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc--CCchhhHHHHHHH
Q 017532 303 ---LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY--VNHSDIKRTLSSW 354 (370)
Q Consensus 303 ---~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~--~~~~~~~~~ll~~ 354 (370)
..++++|+..|+++.+... ....++|+.+|+... ..+..+...+...
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~-----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQ-----NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTC-----TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhCh-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4499999999999988643 567889999998432 1233444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=102.42 Aligned_cols=93 Identities=8% Similarity=0.054 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL----------EGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+.+.|++|+..++++++.+| .++.++.++|.++...|++ ++|+..|++++++.|+ .
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------------~- 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------------K- 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------------C-
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------------c-
Confidence 34789999999999999999 9999999999999999875 5999999999977554 3
Q ss_pred HHHHHhHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHH
Q 017532 256 NLVSRNKALIYLVGK-----------DYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g-----------~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
..+++++|.+|..+| ++++|+++|+++++++|++...
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 778999999999885 8999999999999999998643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=93.57 Aligned_cols=103 Identities=14% Similarity=-0.004 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+++.+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|++++++.+.. .+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~---- 75 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE-------YN---- 75 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-------TC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-------ch----
Confidence 456788999999999999999999999999 999999999999999999999999999999754330 01
Q ss_pred HHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q 017532 256 NLVSRNKALIYLVG-KDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 256 ~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~p~~~ 290 (370)
..++.++|.++... |++++|+++|++++..+|.++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 56788999999999 999999999999999998753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=125.11 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+..+|.++.+.|++++|+++|++++++.++. ..++.++|.++..+|++++|++.|+++++++|+++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 45567888999999999999999999765442 67789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
.+++++|.++..+|++++|++.|+++++.+|+. .....+++.+..+...+..+++..+.
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---TTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999987 66777777774333333334444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-10 Score=92.48 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..++..+|.++...|++++|+.+|++++++.+.. .++.....++.++|.++...|++++|+..|+++++..+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999887652 233333678899999999999999999999999987543
Q ss_pred C------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 289 D------IVAINNKALCLMYLRDLSDSIKVLENALERVPT---VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 289 ~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
. ..++.++|.++...|++++|+..++++++..+. .........+++.+|....+ .+.....++...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~ 156 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHL 156 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHHHHH
Confidence 2 568899999999999999999999999987432 22335677889998875433 566666665443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=112.70 Aligned_cols=138 Identities=11% Similarity=-0.036 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGN----GLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
....+..+..+|+|++|+.++++++++.. .+++ .++++||.+|..+|++++|+.++++++.+...... .
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG----~ 387 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH----H 387 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----T
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC----C
Confidence 34555667889999999999999987532 1555 45689999999999999999999999988765432 5
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYNDI---VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+|+. +..+.++|.+|..+|++++|+..|++++++ .|+++ .+..+++.++..++++++|...|.++.+.
T Consensus 388 ~Hp~~-a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 388 NNAQL-GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888 899999999999999999999999999987 45555 56789999999999999999999998654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-12 Score=119.18 Aligned_cols=234 Identities=13% Similarity=0.052 Sum_probs=101.2
Q ss_pred HcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccc
Q 017532 40 TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVP 119 (370)
Q Consensus 40 ~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (370)
+.|++++|.+.+++. .+| . .|...+.++.+.|++++|+..+.+..+.. .|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~---~-vWs~La~A~l~~g~~~eAIdsfika~D~~---~y~---------------- 65 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEP---A-VWSQLAKAQLQKGMVKEAIDSYIKADDPS---SYM---------------- 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CCh---H-HHHHHHHHHHHcCCHHHHHHHHHcCCCHH---HHH----------------
Confidence 567799999888774 122 2 33445888999999999999887653221 111
Q ss_pred hhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-HH-----HH-hhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 120 FSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-LA-----RK-LAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 120 ~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-~~-----~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
.+ .......|+.++|+..+...++..+.. +. .. +.+...+.....+.-...++..+|..+...|+|++
T Consensus 66 ---~V--~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 66 ---EV--VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTCC----------------CTTT
T ss_pred ---HH--HHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Confidence 00 111244688888888665554432111 00 00 11111121111111113477899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|..+|.++ ..+..+|.++.++|++++|++.|.++. + ...|...+.++...|+|
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------------~----~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--------------S----TRTWKEVCFACVDGKEF 193 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------------C----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--------------C----chhHHHHHHHHHHcCcH
Confidence 99999976 248889999999999999999999994 1 45677788899999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY 341 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~ 341 (370)
+.|..+... +..+|++ ...++.+|.+.|++++|++.+++++.+++.. ..+...|+.+|...+
T Consensus 194 ~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah---~~~ftel~il~~ky~ 255 (449)
T 1b89_A 194 RLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAH---MGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC---HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH---HHHHHHHHHHHHhcC
Confidence 999887775 3355554 3357788999999999999999999999877 788888999987543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-12 Score=110.98 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=128.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLD---------------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
+.++...+++.+++..+++.+.+.| .. ..+....+.++...|++++|.+.|+.+.
T Consensus 54 ~~~L~~~~r~~~a~~~~~~~l~l~p-~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~--- 129 (282)
T 4f3v_A 54 RVTLFRAWYSRRNFGQLSGSVQISM-STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP--- 129 (282)
T ss_dssp HHHHHHHHHTGGGTTHHHHTTTCCG-GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCh-hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 5667777888899999999999777 22 2445667899999999999999999887
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-D-IVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-~-~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
...|.. . ..+.+|.+++..|+|++|+..|++++...++ . ..+++++|.++..+|++++|+..|++++
T Consensus 130 ---------~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 130 ---------VAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp ---------CTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 334554 4 7788999999999999999999988765322 1 3589999999999999999999999998
Q ss_pred HhC--CCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 318 ERV--PTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 318 ~~~--p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
... |. ......++++.++.- .+..+++..+++++....|+
T Consensus 199 ~g~~~P~--~~~da~~~~glaL~~--lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 199 DSPAGEA--CARAIAWYLAMARRS--QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TSTTTTT--THHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSCC
T ss_pred cCCCCcc--ccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCc
Confidence 544 33 135678888887763 45578889988888777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-10 Score=109.94 Aligned_cols=136 Identities=5% Similarity=-0.004 Sum_probs=123.8
Q ss_pred cCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 187 SKE-YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD----------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 187 ~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
.|+ .++|+..+.+++..+| .+..+|+..+.++...|+ ++++++.++++++..+++
T Consensus 41 ~~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------------- 106 (567)
T 1dce_A 41 AGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------- 106 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-------------
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-------------
Confidence 344 4578999999999999 999999999999999998 999999999999765543
Q ss_pred HHHHHhHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 256 NLVSRNKALIYLVGK--DYVSAVREYEECIERDYNDIVAINNKALCLMYLR-DLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g--~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
..+|.++|.++...| ++++|++.+.++++.+|.+..+|++++.++...| .+++++++++++++.+|++ ..++.+
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n---~saW~~ 183 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---YSSWHY 183 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---HHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC---ccHHHH
Confidence 678999999999999 7799999999999999999999999999999999 9999999999999999998 788888
Q ss_pred HHHHHHh
Q 017532 333 LCSMYEL 339 (370)
Q Consensus 333 l~~lyel 339 (370)
.+.++..
T Consensus 184 r~~ll~~ 190 (567)
T 1dce_A 184 RSCLLPQ 190 (567)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-12 Score=94.85 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...+..+|.++...|++++|+..|++++++.+.. ..++.++|.+++..|++++|+..|+++++++|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-------------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3445556666666666666666666666543321 334555666666666666666666666666666
Q ss_pred C------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 289 D------IVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 289 ~------~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
+ ..+++++|.++...|++++|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 5 5566666666666666555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-09 Score=99.14 Aligned_cols=140 Identities=9% Similarity=-0.065 Sum_probs=125.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG-DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
....+..++|+..+.+++..+| .+..+|+..+.+....| ++++++..+++++...+++ -.+|..+
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-------------y~aW~hR 129 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-------------YQVWHHR 129 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-------------HHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-------------HHHHHHH
Confidence 3344666789999999999999 99999999999999999 5999999999999655443 6789999
Q ss_pred HHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 263 ALIYLVG-K-DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS--------DSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 263 g~~~~~~-g-~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~--------~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
+.++... + +++++++.+.++++.+|.|..+|+.++-++...|+++ +++++++++++.+|++ ..++.+
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N---~SAW~~ 206 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN---NSAWGW 206 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 9999988 8 9999999999999999999999999999999999988 9999999999999998 888888
Q ss_pred HHHHHHhc
Q 017532 333 LCSMYELA 340 (370)
Q Consensus 333 l~~lyel~ 340 (370)
...+....
T Consensus 207 R~~lL~~l 214 (349)
T 3q7a_A 207 RWYLRVSR 214 (349)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhc
Confidence 88776543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.3e-10 Score=105.19 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=154.8
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCc------------hHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQP------------HHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS 98 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P------------~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~ 98 (370)
.....+.+++.|+|++|++.+.+++........ ......+...+..+...|++++|...+..+....+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345778899999999999999997654311100 00011233346778999999999999888743211
Q ss_pred CCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 99 SGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
........-..+.....+....|..+.++..+...+......- .. . . ..+++.
T Consensus 87 -------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~-~-----~----~~~~~~ 139 (434)
T 4b4t_Q 87 -------------QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK----RV-F-----L----KHSLSI 139 (434)
T ss_dssp -------------TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS----CC-S-----S----HHHHHH
T ss_pred -------------HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC----cc-H-----H----HHHHHH
Confidence 0010111112233345555667888888877766554433210 00 0 0 136778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+|.++...|+|++|+.++++++.... .....++..+|++|...|++++|...|++++.+.+.. ...+.
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~ 213 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI------YCPTQ 213 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------CCCHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC------CCchH
Confidence 999999999999999999999976432 1234678999999999999999999999999887654 34455
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.....+...|.++...|+|++|..+|.++++.
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55788889999999999999999999999875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-10 Score=82.33 Aligned_cols=80 Identities=24% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
...+..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++...|++++|+..++++++.+|++ .....+++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999987 788899988
Q ss_pred HHH
Q 017532 336 MYE 338 (370)
Q Consensus 336 lye 338 (370)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=82.43 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...++.+|.++...|++++|+.+|++++++.+.. ..++.++|.++...|++++|+..|+++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788999999999999999999999999764432 4567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 017532 287 YNDIVAINNKALCLMYLR 304 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g 304 (370)
|+++.++.++|.++...|
T Consensus 74 p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999988765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-10 Score=85.64 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
++.++|.+++..|++++|+..|++++..+|++..+++++|.++...|++++|+..|+++++..|
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3444455555555555555555555555555555555555555555555555555555555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=108.25 Aligned_cols=164 Identities=9% Similarity=0.023 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..+..+|.++.+.|+|++|+..++++ .++.+|..++.++...|+++.|..+.... ..+|+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-------------~~~ad~ 209 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------------VVHADE 209 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-------------TTCHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-------------HhCHhh
Confidence 34568999999999999999999999 56889999999999999999997777653 235544
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCC-----CcchhH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY--LRDLSDSIKVLENALERVP-----TVALNE 327 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~--~g~~~~A~~~l~~al~~~p-----~~~~~~ 327 (370)
...+..+|.+.|++++|+..|++++.+++.+...+.-+|+++.+ .+++.+.++.|.+.+.+.| .. .
T Consensus 210 ----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~---~ 282 (449)
T 1b89_A 210 ----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ---A 282 (449)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT---T
T ss_pred ----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH---H
Confidence 22477889999999999999999999999999999999998875 6788888888887766655 33 4
Q ss_pred HHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCCcccc
Q 017532 328 TLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTR 369 (370)
Q Consensus 328 ~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~~~~ 369 (370)
.++..+..+|--..+ -+.+.. -+-..+++.|+...||
T Consensus 283 ~~w~e~~~ly~~~~e--~d~A~~---tm~~h~~~a~~~~~f~ 319 (449)
T 1b89_A 283 HLWAELVFLYDKYEE--YDNAII---TMMNHPTDAWKEGQFK 319 (449)
T ss_dssp TCHHHHHHHHHHTTC--HHHHHH---HHHHSTTTTCCHHHHH
T ss_pred HHHHHHHHHHHhhch--HHHHHH---HHHhCChhhhhhHHHH
Confidence 566777777753222 222221 2345566766665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-10 Score=82.96 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=73.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc---hhHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA---LNETLVVN 332 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~~~n 332 (370)
...+..+|.+++..|++++|++.|+++++.+|+++.+++++|.++...|++++|++.++++++.+|++. ....++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999851 12445667
Q ss_pred HHHHHHh
Q 017532 333 LCSMYEL 339 (370)
Q Consensus 333 l~~lyel 339 (370)
++.++..
T Consensus 84 ~~~~~~~ 90 (111)
T 2l6j_A 84 LELAQGA 90 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-09 Score=85.47 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
+++++|+.+|+++.+.+. .... +|.+|...+.+++|+.+|+++.+. .+ ..+..++|.+|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-----------g~----~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL-----------NS----GNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----------TC----HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----------CC----HHHHHHHHHHHH
Confidence 678999999999998876 4443 999999999999999999999853 12 456788999999
Q ss_pred H----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCC
Q 017532 268 V----GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVP 321 (370)
Q Consensus 268 ~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p 321 (370)
. .+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+..|+++.+...
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9 89999999999999987 679999999999999 9999999999999999854
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-10 Score=85.26 Aligned_cols=81 Identities=10% Similarity=-0.050 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++ ...+++++.+|.... ..+.....+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g--~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQG--DRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999988 788999999998544 366666666
Q ss_pred HHHhhh
Q 017532 353 SWIGRV 358 (370)
Q Consensus 353 ~~~~~~ 358 (370)
+.....
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-10 Score=84.56 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=64.0
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..+++++|.+++..|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|++++++.|+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5678999999999999999999999999999999999999999999999999999999999998765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-09 Score=97.59 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=128.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD-----------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
..|..+...|+|++|+..|.++++..+ .. ..++..+|.+|...|++++|.++|++++...+.
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDS-SQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCC-CSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc-ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 445667778999999999999999887 22 145788999999999999999999999987765
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
. .+......+..++|.++...|++++|+..+++++... +....++.++|.++...|++++|+..+++
T Consensus 88 ~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 88 F-------AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp S-------CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c-------cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3 2222224566778999999999999999999998763 33457889999999999999999999999
Q ss_pred HHHhCCC---cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 316 ALERVPT---VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 316 al~~~p~---~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
++..... ......++.+++.+|....+ .++...++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al 202 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLTAAR 202 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHHHHH
Confidence 8876322 12235677888888875444 566666655544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=83.97 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=41.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIV-AINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~-~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..|.+++..|++++|+..|+++++.+|+++. +++++|.++...|++++|++.|+++++.+|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 4566666666666666666666666666666 66666666666666666666666666666665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=97.98 Aligned_cols=165 Identities=12% Similarity=0.061 Sum_probs=122.4
Q ss_pred HHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 124 WLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 124 ~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
.+.+.+....|+.++|+..+...+...+. . . ..+++..++.+++.+|+.+.|...++++.+.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~------~----~--------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA------E----G--------TTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS------T----T--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC------c----C--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45666667789999888877664321110 0 0 0134457788999999999999999999888
Q ss_pred CCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH
Q 017532 204 GNGL----DPILVSKL--GFIQMQVG--DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA 275 (370)
Q Consensus 204 ~~~~----~~~~~~~l--g~~~~~~g--~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA 275 (370)
+| + +..++..+ |++.+..| ++.+|...|+++.... .+... ...+.+ +++.+|++++|
T Consensus 166 ~~-d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----------p~~~~-~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 166 IE-DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----------PTWKT-QLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----------CSHHH-HHHHHH---HHHHHTCHHHH
T ss_pred Cc-cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----------CCccc-HHHHHH---HHHHcCCHHHH
Confidence 77 3 34444444 55566667 9999999999987321 11001 222333 89999999999
Q ss_pred HHHHHHHHhh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 276 VREYEECIER----------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 276 ~~~~~~~l~~----------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+.++.+++. +|+++.++.|++.+...+|+ +|.++++++.+.+|+.
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 9999988876 58899999999999999998 9999999999999986
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.8e-09 Score=99.18 Aligned_cols=118 Identities=9% Similarity=-0.105 Sum_probs=97.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCC--
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYN-- 288 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~-- 288 (370)
+..+..+|++++|+..|++++++....-. ..+|.. ..++.++|.+|..+|+|++|+.++++++++ .|+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg----~~Hp~~-a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFA----DTNLYV-LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBC----TTSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CCCHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 44566899999999999999998776533 567887 899999999999999999999999999987 344
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCcchhHHHHHHHHHHHH
Q 017532 289 -DIVAINNKALCLMYLRDLSDSIKVLENALER-----VPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 289 -~~~~~~nla~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~~~nl~~lye 338 (370)
....++|+|.+|..+|++++|+..|++|+++ .|+......+.-+|+..+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 446 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM 446 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999975 5665333455566766663
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-09 Score=77.40 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCccCCccchHHHHHH-HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 017532 232 FNRVEEMLNEGKFEDGLLSEVEFRNL-VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 232 ~~~a~~l~~~~~~~~~~~~~p~~~~~-~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~ 310 (370)
+++|+....... ..+|+. .. ++.++|.++...|++++|+..|+++++.+|++..++++ +.+.+++
T Consensus 16 ~~~A~~~~~~al-----~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~ 81 (99)
T 2kc7_A 16 IENALQALEEFL-----QTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDIL 81 (99)
T ss_dssp HHHHHHHHHHHH-----HHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHH-----HHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHH
Confidence 445665544421 233444 45 88999999999999999999999999999999988765 6788999
Q ss_pred HHHHHHHHhCCCc
Q 017532 311 KVLENALERVPTV 323 (370)
Q Consensus 311 ~~l~~al~~~p~~ 323 (370)
..|++++..+|++
T Consensus 82 ~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 82 NFYNKDMYNQLEH 94 (99)
T ss_dssp HHHCCTTHHHHCC
T ss_pred HHHHHHhccCccc
Confidence 9999998888875
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-09 Score=77.03 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+| .++.+++.+|.++...|++++|+.+|++++++.++. ..++.++|.++...|++++|+..|++++
T Consensus 3 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 3 DP-EDPFTRYALAQEHLKHDNASRALALFEELVETDPDY-------------VGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46 677778888888888888888888888888654432 4567778888888888888888888887
Q ss_pred hhCC
Q 017532 284 ERDY 287 (370)
Q Consensus 284 ~~~p 287 (370)
++.|
T Consensus 69 ~l~~ 72 (100)
T 3ma5_A 69 EVAR 72 (100)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=96.92 Aligned_cols=95 Identities=14% Similarity=-0.014 Sum_probs=83.6
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CC---CCHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DY---NDIV 291 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p---~~~~ 291 (370)
...|++++|+..|++++++....-. ..+|.. ..++.++|.+|..+|+|++|+.+|++++++ .| +...
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg----~~Hp~~-a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFE----DSNVYM-LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBC----TTSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccC----hhchHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 3578999999999999998776433 567887 899999999999999999999999999987 34 4457
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.++|+|.+|..+|++++|+..|++|+++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999886
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=95.11 Aligned_cols=120 Identities=11% Similarity=-0.066 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN----GLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
....-+...|+|++|+..+++++++.. ..++ .++.++|.+|..+|++++|+.++++++.+...... ..+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg----~~H 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP----GSH 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC----SSC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC----CCC
Confidence 334556678999999999999997643 1555 45689999999999999999999999988665322 568
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHh
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYNDI---VAINNKALCLMYL 303 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~~---~~~~nla~~~~~~ 303 (370)
|.. +..++++|.+|..+|++++|+..|++++++ .|+++ .++++++.+....
T Consensus 368 p~~-a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 368 PVR-GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 888 899999999999999999999999999987 46665 5667777776543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=86.96 Aligned_cols=138 Identities=9% Similarity=-0.045 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 177 LNCLIGYHLSSK---EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV---G-DLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 177 ~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~---g-~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
++..|..++..+ +..+|+.+|+++++.+| +.+.++..++.++... + ..........++.+..... .
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP-~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~------~ 271 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSP-EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL------P 271 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC------G
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc------c
Confidence 345555555544 45899999999999999 9999998888777532 1 1112222223333211111 1
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+|.. ..++..+|..+...|++++|+..++++++++| ++.++..+|.++...|++++|++.|++|+.++|..
T Consensus 272 ~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 272 ELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 22222 45566688888889999999999999999997 47888999999999999999999999999999975
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=94.93 Aligned_cols=102 Identities=9% Similarity=0.023 Sum_probs=86.6
Q ss_pred HhcCCHHHHHHHHHHHHhC-----CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 185 LSSKEYNVCFDLMNESIGR-----GNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~-----~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
...|+|++|+.++++++++ ++ +++ .++.+||.+|..+|++++|+.++++++.+...... ..+|+. +
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG----~~Hp~~-a 382 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP----VYSLNV-A 382 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----SSCHHH-H
T ss_pred hhccCHHHHHHHHHHHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC----CCChHH-H
Confidence 3568999999999999874 44 565 45689999999999999999999999988765422 568888 8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIER-----DYNDIVA 292 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~~~~ 292 (370)
..++++|.+|..+|++++|+..|++++++ .|+++.+
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999999999999999999887 5777644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.6e-08 Score=91.69 Aligned_cols=114 Identities=11% Similarity=-0.130 Sum_probs=90.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYND--- 289 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~--- 289 (370)
-+..+|++++|+..|++++++....-. ..+|.. ..++.++|.+|..+|+|++|+.++++++++ .|++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg----~~h~~~-~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLP----DINIYQ-LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCC----TTSHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCC----ccchHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 345689999999999999976554322 567777 889999999999999999999999999977 3444
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCcchhHHHHHHHHHH
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALER-----VPTVALNETLVVNLCSM 336 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~~~nl~~l 336 (370)
...++|+|.+|..+|++++|+..+++|+++ .|+......+.-||+..
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 478999999999999999999999999876 55543223344444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-06 Score=85.24 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=124.4
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHH
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK---------EYNVCFDLMNESI 201 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l 201 (370)
+..|+.++|+..+.++...- + ..+ ..+++.+...+...+ +.+.|..+|+++.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~G---v---~pd-------------~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNG---V---QLS-------------QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHT---C---CCC-------------HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcC---C---CCC-------------HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 77899999998888775320 0 000 133445555554433 4789999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 017532 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEE 281 (370)
Q Consensus 202 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 281 (370)
..+...+..+++.+...+.+.|++++|.+.|+++.+. ...|+. ..+..+-..+.+.|+.++|.+.|++
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------g~~Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF----------GIQPRL--RSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCCcc--ceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8876578999999999999999999999999999852 234443 3344455566699999999999999
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 282 CIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 282 ~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+.. ..+..+|+.+..++.+.|+.++|.++|+++-+..-.+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99875 4578899999999999999999999999998765443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.9e-07 Score=85.35 Aligned_cols=165 Identities=11% Similarity=-0.006 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHhhcCCccCC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG---------DLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
+..+...+++.|+.++|+.+|+++.+.+-..+..+++.+-.++...| ++++|.+.|+++.+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--------- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--------- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---------
Confidence 44556788899999999999999998876578888888877776554 378999999998742
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
...|+. ..+..+-..+.+.|++++|.+.|+++.+.. ..+..+|+.+..++++.|++++|.+.|+++.+..-.+.
T Consensus 100 -G~~Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-- 174 (501)
T 4g26_A 100 -KVVPNE--ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-- 174 (501)
T ss_dssp -TCCCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--
T ss_pred -CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC--
Confidence 234443 345556667779999999999999998875 55789999999999999999999999999998754441
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
...+..|-..| +..+..++...+++....
T Consensus 175 ~~ty~~Li~~~--~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 EPELAALLKVS--MDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHH--HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhCCCHHHHHHHHHHHHH
Confidence 22233333343 345667888888777653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-07 Score=70.04 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
++.-.+.+|..+++.|+++.|+.+|++|++..+... ...+.. ..++..+|.+++++|++++|+..+++++.++|
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----~~~~~~-~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----ISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----CCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----CCcccH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 345568899999999999999999999998765421 011112 56788899999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 017532 288 NDIVAINNKA 297 (370)
Q Consensus 288 ~~~~~~~nla 297 (370)
++..+.+|++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 9999998887
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-07 Score=69.35 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=65.9
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERD-------YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~-------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
.+.+|..++..|+|..|+.+|++++... +..+.++.++|.++.++|++++|+..++++++.+|++ ..+..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~ 84 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANG 84 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHh
Confidence 4679999999999999999999999863 3456899999999999999999999999999999998 77778
Q ss_pred HHH
Q 017532 332 NLC 334 (370)
Q Consensus 332 nl~ 334 (370)
|+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 887
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=69.39 Aligned_cols=68 Identities=10% Similarity=-0.074 Sum_probs=62.3
Q ss_pred HHHHHhHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKD---YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~---~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..++..+|.+++..++ .++|...|+++++.+|+++.+++.+|..++..|++++|+.+|+++++.+|..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3457778999877766 7999999999999999999999999999999999999999999999999983
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-06 Score=74.28 Aligned_cols=109 Identities=13% Similarity=-0.028 Sum_probs=89.8
Q ss_pred hCCCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-
Q 017532 202 GRGNGLDPILVSKLGFIQMQ-----VG------DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG- 269 (370)
Q Consensus 202 ~~~~~~~~~~~~~lg~~~~~-----~g------~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~- 269 (370)
+.++ .++..++..|.++.. .| ....|...+++++++.++ .. . ..++..+|.+|...
T Consensus 146 ~~~~-~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~-------~~---~-GsA~~~LG~lY~~vP 213 (301)
T 3u64_A 146 RCTR-VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS-------YQ---E-GAVWNVLTKFYAAAP 213 (301)
T ss_dssp TCCG-GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT-------HH---H-HHHHHHHHHHHHHSC
T ss_pred HcCc-cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC-------cc---c-CHHHHHHHHHHHhCC
Confidence 4456 788888777766533 23 357889999999977554 11 1 56788899999995
Q ss_pred ----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCC
Q 017532 270 ----KDYVSAVREYEECIERDYND-IVAINNKALCLMYL-RDLSDSIKVLENALERVPT 322 (370)
Q Consensus 270 ----g~~~eA~~~~~~~l~~~p~~-~~~~~nla~~~~~~-g~~~~A~~~l~~al~~~p~ 322 (370)
|+.++|..+|+++++++|+. ..+++.+|..++.. |+.++|.+++++++..+|.
T Consensus 214 p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 214 ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999975 99999999999985 9999999999999999887
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.5e-06 Score=81.10 Aligned_cols=240 Identities=10% Similarity=0.022 Sum_probs=159.5
Q ss_pred HHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHH-HHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHH
Q 017532 46 TIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQ-QELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRW 124 (370)
Q Consensus 46 ~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 124 (370)
.+...|++++. ..|.....|+.+ +.-+...|..++|. ..+.+..... |. + ..+.+
T Consensus 327 Rv~~~Ye~aL~----~~p~~~~lW~~y-a~~~~~~~~~~~a~r~il~rAi~~~-------------P~---s---~~Lwl 382 (679)
T 4e6h_A 327 RMTYVYMQAAQ----HVCFAPEIWFNM-ANYQGEKNTDSTVITKYLKLGQQCI-------------PN---S---AVLAF 382 (679)
T ss_dssp HHHHHHHHHHH----HTTTCHHHHHHH-HHHHHHHSCCTTHHHHHHHHHHHHC-------------TT---C---HHHHH
T ss_pred HHHHHHHHHHH----HcCCCHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHhC-------------CC---C---HHHHH
Confidence 34455666543 357655566554 44456678888886 8777774221 10 1 12344
Q ss_pred HHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhh--HHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017532 125 LYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKL--EESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIG 202 (370)
Q Consensus 125 l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 202 (370)
..+.+.-..|+.+.|.+.+..++.........-..... .+...........++...+....+.|+.+.|..+|.++++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44554456788888888887777654322211000000 0001111111233455666777778999999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH
Q 017532 203 R-GNGLDPILVSKLGFIQMQVG-DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE 280 (370)
Q Consensus 203 ~-~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 280 (370)
. .+ ....++...+.+-.+.| +++.|.+.|+++++..++ ++ ..+...+......|+.+.|..+|+
T Consensus 463 ~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~---------~~----~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 463 LKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT---------DG----EYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp TGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT---------CH----HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---------ch----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7 44 45567777777777765 599999999999987665 23 345566777788899999999999
Q ss_pred HHHhhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 281 ECIERDYN---DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 281 ~~l~~~p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++...|+ ...+|......-...|+.+.+.++.+++.+..|+.
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99998873 44566667776778899999999999999999985
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-07 Score=71.70 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHH
Q 017532 224 DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK---DYVSAVREYEECIERD-Y-NDIVAINNKAL 298 (370)
Q Consensus 224 ~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g---~~~eA~~~~~~~l~~~-p-~~~~~~~nla~ 298 (370)
++..+.+.|++.....+ .+ .++.++.|.++...+ +..+++..|+.+++.+ | ++...++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~---------~~----~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS---------VS----KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHHHHHTTC---------CC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC---------Cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 45667777877764211 12 567788999999988 7779999999999998 7 56899999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 299 CLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 299 ~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.++++|+|++|+++++++++.+|++
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999986
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=69.57 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
....+...|++.+..++ .+..+.+.+|+++.+.+ ++++++..++..++. ..|..+.+.++++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----------~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----------GSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----------CCccchHHHHHHHHHH
Confidence 34566777888888888 89999999999999998 777999999999952 1253347889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
+++.|+|++|..+++++++.+|++..+..-+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999999999988766543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-06 Score=66.97 Aligned_cols=98 Identities=13% Similarity=-0.011 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+|.+|...+.+++|+.+|+++.+. .++.+.+.+|.+|.. .+|+++|+.+|+++.+. .+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----------g~---- 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----------ND---- 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----------TC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----------CC----
Confidence 888888889999999999999986 568999999999999 89999999999999853 12
Q ss_pred HHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 256 NLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 256 ~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
..+..++|.+|.. .+++++|+.+|+++.+.. ++.+..+++
T Consensus 93 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 93 QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 4567889999999 999999999999999874 455555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.4e-06 Score=81.87 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRG-----------NGL-----------DPILVSKLGFIQMQVGDLEGAKKSF 232 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----------~~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~ 232 (370)
.++...+......|+++.|..+|++++... | . ...+|...++...+.|+.+.|.+.|
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p-~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP-TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC-cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345667788888999999999999998752 3 2 2346777788888899999999999
Q ss_pred HHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 017532 233 NRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311 (370)
Q Consensus 233 ~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~ 311 (370)
.+|+...+. .. ..++...|.+-+..| +++.|...|+++++..|+++..+...+......|+.+.|..
T Consensus 458 ~~A~~~~~~--------~~----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 458 GKCRRLKKL--------VT----PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHHHHTGGG--------SC----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcCC--------CC----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 999864221 11 234555666666654 59999999999999999999999899998889999999999
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 312 VLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 312 ~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.|++++...|+... ...++..-.-||.. .|+.+...++.....+.-|++
T Consensus 526 lferal~~~~~~~~-~~~lw~~~~~fE~~-~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 526 LFESSIDKISDSHL-LKMIFQKVIFFESK-VGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHTTTSSSTTH-HHHHHHHHHHHHHH-TCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhcCCHHH-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence 99999999884211 33344444445543 344567777777776655554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=63.84 Aligned_cols=72 Identities=3% Similarity=-0.031 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE 280 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 280 (370)
+| .++..+..+|.+++..++ .++|...+++++++.++. ..+++.+|..++..|+|++|+.+|+
T Consensus 2 ~p-~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-------------~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 2 NA-VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-------------EAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CC-CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45 788899999998876666 689999999999765543 5677889999999999999999999
Q ss_pred HHHhhCCCC
Q 017532 281 ECIERDYND 289 (370)
Q Consensus 281 ~~l~~~p~~ 289 (370)
++++.+|.+
T Consensus 68 ~~l~~~p~~ 76 (93)
T 3bee_A 68 LLLDSNDPN 76 (93)
T ss_dssp HHHTCCCTT
T ss_pred HHHhhCCCC
Confidence 999998874
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-05 Score=62.81 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-- 286 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-- 286 (370)
-.++..-....+..|.|+.|+-....++.+...+. ....|..+..+...+|..++..|+|..|...|++++...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~----~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP----ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST----TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc----ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34455667778889999999999999888865532 134677778889999999999999999999999987652
Q ss_pred -CC----------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 287 -YN----------------------DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 287 -p~----------------------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
+. +..+.+.+|.|+...|++++|+..++.+-...-+ ..+..-|+.+|
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt----~kvnm~LakLy 165 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT----PKINMLLANLY 165 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC----HHHHHHHHHHC
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC----HHHHHHHHHHh
Confidence 11 1267899999999999999999999886444332 45666677776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.7e-05 Score=69.66 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=94.8
Q ss_pred HHhCCCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC---
Q 017532 200 SIGRGNGLDPILV--SKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD--- 271 (370)
Q Consensus 200 ~l~~~~~~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~--- 271 (370)
+....| .+..+| +..|+-++..++ +.+|+.+|++++++.|+ + ..++..++.+++....
T Consensus 186 ~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------------~-a~A~A~la~a~~~~~~~~~ 251 (372)
T 3ly7_A 186 LQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------------F-TYARAEKALVDIVRHSQHP 251 (372)
T ss_dssp HHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------------C-HHHHHHHHHHHHHHHHHSC
T ss_pred HhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------C-HHHHHHHHHHHHHHhccCC
Confidence 334455 555444 667888877665 47999999999976544 3 5555556666542111
Q ss_pred ----HHHHH-HHHHH--HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCc
Q 017532 272 ----YVSAV-REYEE--CIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNH 344 (370)
Q Consensus 272 ----~~eA~-~~~~~--~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~ 344 (370)
..+++ ..++. ++..+|.++.++.-++..+...|++++|+..+++++.++|+ ...+..++.++++..+
T Consensus 252 ~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~-- 325 (372)
T 3ly7_A 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGM-- 325 (372)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTC--
T ss_pred CchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCC--
Confidence 11111 12222 22557999999999999999999999999999999999975 4456788899987544
Q ss_pred hhhHHHHHHHHhhhCC
Q 017532 345 SDIKRTLSSWIGRVAP 360 (370)
Q Consensus 345 ~~~~~~ll~~~~~~~~ 360 (370)
.+...+....--+..|
T Consensus 326 ~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 326 NREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5666666655444444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0002 Score=54.84 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEG---AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~---A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
..+...|++....++ ....+.+.+|+++.+...... ++..++...+ ...|..+.+..+.+|..++
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-----------~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-----------KGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-----------TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----------cCCcchHHHHHHHHHHHHH
Confidence 334455555555555 666777777777777666555 6666666552 1124333556666777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINNK 296 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~nl 296 (370)
+.|+|++|..+++.+++.+|+|..+..-.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 77777777777777777777776655433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00041 Score=71.04 Aligned_cols=134 Identities=9% Similarity=0.009 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD- 286 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~- 286 (370)
...+++.+-..+++.|++++|.+.|+++.+.... ...|+. ..|..+-..+++.|+.++|.+.|+++.+..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-------G~~Pdv--vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~ 196 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-------RKLLTL--DMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-------HTTCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-------CCCCCH--hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3457888999999999999999999887643221 234443 334445555569999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 287 YNDIVAINNKALCLMYLRDL-SDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
..|..+|+.+..++++.|+. ++|.+.|+++.+..-.+ +.+.++-. + ....+..+++.|.+..|+
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~P---D~vtY~~l-l-------~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL---QALFTAVL-L-------SEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCS---HHHHHHSC-C-------CHHHHHHHHHHHGGGCCC
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCC---Chhhcccc-c-------ChhhHHHHHHHHHHhCcc
Confidence 56899999999999999985 78999999999987665 55555421 1 246667788888877553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0002 Score=54.88 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHH
Q 017532 222 VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS---AVREYEECIERD-Y-NDIVAINNK 296 (370)
Q Consensus 222 ~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e---A~~~~~~~l~~~-p-~~~~~~~nl 296 (370)
...+..+...|++...... .. ..+.++.|.++....+..+ ++..++..+..+ | .....++.+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~---------~s----~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS---------VS----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC---------CC----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC---------Cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3455667777777764211 11 4567889999999888888 999999999887 5 466899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 297 ALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 297 a~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+.++++|+|++|+.+++.+++..|++
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999986
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=6.5e-05 Score=66.12 Aligned_cols=87 Identities=8% Similarity=0.033 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 189 EYNVCFDLMNESIGRGNGL--DPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~--~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
....|...++++++++| . +..++..+|.+|.+. |+.++|.++|++++++.++. ..+ .++.
T Consensus 178 ~l~~A~a~lerAleLDP-~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~------~id------~~v~ 244 (301)
T 3u64_A 178 TVHAAVMMLERACDLWP-SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH------DPD------HHIT 244 (301)
T ss_dssp HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT------CSH------HHHH
T ss_pred hHHHHHHHHHHHHHhCC-CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC------Cch------HHHH
Confidence 46789999999999999 7 567999999999995 99999999999999987752 133 3445
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 017532 262 KALIYLV-GKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 262 ~g~~~~~-~g~~~eA~~~~~~~l~~~p~ 288 (370)
.|..++. .|++++|...+++++..+|.
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 7888877 59999999999999998876
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00082 Score=52.72 Aligned_cols=114 Identities=12% Similarity=-0.032 Sum_probs=92.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHH
Q 017532 203 RGNGLDPILVSKLGFIQMQVGDL------EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAV 276 (370)
Q Consensus 203 ~~~~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~ 276 (370)
..| .+++.|..........|+. ++-++.|++|+...|.... ...... ...|+..+.. ...++.++|.
T Consensus 8 ~~p-~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~----~~wrrY-I~LWIrYA~~-~ei~D~d~aR 80 (161)
T 4h7y_A 8 MMA-NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY----GQNESF-ARIQVRFAEL-KAIQEPDDAR 80 (161)
T ss_dssp --C-CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG----TTCHHH-HHHHHHHHHH-HHHHCGGGCH
T ss_pred eCC-CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc----ccHHHH-HHHHHHHHHH-HHhcCHHHHH
Confidence 356 8888888878888888998 8889999999987654311 222333 6667777755 5669999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 277 REYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 277 ~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..|+.++..+...+.+|...|.--.+.|+++.|.+.+.+++.+.|.+
T Consensus 81 ~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 81 DYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 99999999888888899999998899999999999999999999986
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00093 Score=53.47 Aligned_cols=119 Identities=11% Similarity=-0.147 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC--
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD---------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG-- 247 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~-- 247 (370)
.-+..++..|.|+.|+.....++.... ++ ..++..+|.+++..|+|..|...|++++.+.+.-.....
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~-~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSN-NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc-CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344556777999999999888766543 22 247789999999999999999999999887663211000
Q ss_pred -----ccchH---HH--HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 248 -----LLSEV---EF--RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 248 -----~~~~p---~~--~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
....| +. ..++.+.++.|+++.|++.+|+..++.+-.. -..+.+...+|..
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL 164 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL 164 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence 00001 00 1356677999999999999999988764211 2344444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.45 E-value=0.012 Score=56.57 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc------cCCc---------------
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF------EDGL--------------- 248 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~------~~~~--------------- 248 (370)
.+....+|++++...| ..+.+|...+..+.+.|++++|...|++++.. |.+.. ....
T Consensus 195 ~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 3456789999999889 88999999999999999999999999999987 65421 0000
Q ss_pred -------cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhC
Q 017532 249 -------LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR-DLSDSIKVLENALERV 320 (370)
Q Consensus 249 -------~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-~~~~A~~~l~~al~~~ 320 (370)
...+.. ..+|...+......|..+.|...|+++ ...+....++...|..-...+ +.+.|.+.|+.+++..
T Consensus 273 ~~~~~~~~~~~~~-~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKEL-DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 001111 345666666666788899999999999 433345667766676666666 5999999999999988
Q ss_pred CCc
Q 017532 321 PTV 323 (370)
Q Consensus 321 p~~ 323 (370)
|+.
T Consensus 351 ~~~ 353 (493)
T 2uy1_A 351 PDS 353 (493)
T ss_dssp TTC
T ss_pred CCC
Confidence 875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.27 E-value=0.019 Score=55.16 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH------------------------------------
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGF------------------------------------ 217 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~------------------------------------ 217 (370)
..++...+..+...|+.+.|..+|++++.. | .+..++...+.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 456777788888999999999999999999 8 55433322221
Q ss_pred ----HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHH
Q 017532 218 ----IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 218 ----~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
...+.|+++.|...|+++ + .+. .. ..++...+.+-+..| +.+.|...|+.+++..|+++..
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~-~~~--------~~----~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-G-NEG--------VG----PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-T-TSC--------CC----HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-h-CCC--------CC----hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 222466788898999888 2 111 11 234444565555555 6999999999999999999988
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 293 INNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
+...+......|+.+.|...|+++
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888999999999999998
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.067 Score=49.47 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNG-LDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..+|..|+..|+|.+|...+.++.+.-.. ++. ..+....++|...|++.++...|.++....... +.+|
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai------~~~p 176 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI------YCPP 176 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------CCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC------CCCH
Confidence 47889999999999999999988764221 222 445667889999999999999999998775442 4678
Q ss_pred HHHHHHHHhHHHHHH-HcCCHHHHHHHHHHHHhhCC-C----CHHHHHHHHHHHHHhCCHHH
Q 017532 253 EFRNLVSRNKALIYL-VGKDYVSAVREYEECIERDY-N----DIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~~l~~~p-~----~~~~~~nla~~~~~~g~~~~ 308 (370)
..++.+...-|..++ ..++|.+|...|-++.+... . ...+...++.|.+-+++..+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 887888888999999 89999999999999875421 1 12334446666666666433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.005 Score=47.25 Aligned_cols=68 Identities=10% Similarity=-0.008 Sum_probs=58.5
Q ss_pred HHHHHhHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDY---VSAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~---~eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+.++.|.++.+..+. .+++..++..+..+|. ....++.+|+.+.++|+|++|..+.+.+++..|++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34567778888777655 4689999999998885 46889999999999999999999999999999987
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.006 Score=47.43 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=59.0
Q ss_pred HHHHHhHHHHHHHcCCHH---HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYV---SAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~---eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+.++.|.++....+.. +++..++..+..+|. ....++.+|+.++++|+|++|..+.+.+++..|++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455677888888877655 689999999998885 45789999999999999999999999999999986
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.03 Score=44.73 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhcCCcc---CCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE--MLNEGKFE---DGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~--l~~~~~~~---~~~~~~p~ 253 (370)
.++-.++-.|+|..|+-.+... +.....+..+.+|-...|+.+|+.+++..+. +.++..-| +.-..+|.
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~l------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHKL------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhcchHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 4455677789999999887754 5567777779999999999999999999983 22221000 00012232
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+...+..+|.++-..|+-+||+.+|......+|--+
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 2345667799999999999999999999988876533
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0046 Score=63.44 Aligned_cols=101 Identities=9% Similarity=-0.030 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR---GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
..+++.+...|++.|+.++|..++.++.+. +...+..+|+.+-..|++.|++++|.+.|+++.+. ..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----------G~ 196 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA----------GL 196 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----------CC
Confidence 467889999999999999999999876543 33368899999999999999999999999999842 45
Q ss_pred hHHHHHHHHHhHHHHHHHcCCH-HHHHHHHHHHHhhC
Q 017532 251 EVEFRNLVSRNKALIYLVGKDY-VSAVREYEECIERD 286 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~-~eA~~~~~~~l~~~ 286 (370)
.|+..+... +-.++.+.|+. ++|.+.|+++.+..
T Consensus 197 ~PDvvTYnt--LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 197 TPDLLSYAA--ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CCCHHHHHH--HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHH--HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 566534443 44455688884 78999999999875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.034 Score=45.15 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
..++.|+++.|.++.+.+ ++...|..||...+..|+++-|+.+|+++-. - -.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------~-------~~L 66 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------------F-------DKL 66 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------H-------HHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------H-------HHH
Confidence 345679999999998877 6788999999999999999999999998851 1 114
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
.++|...|+.+.=.+.-+.+.. ..++ +..-.+++.+|+++++++.|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-~g~~----n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-REDF----GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-TTCH----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-CccH----HHHHHHHHHcCCHHHHHHHHHHC
Confidence 5667777776554333333322 2221 22345678899999999998664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.019 Score=44.08 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 207 LDPILVSKLGFIQMQVGDL---EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~---~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
..+.+.+..|+++.+..+. .+++..++...+- +|..+.+.++.+|..+++.|+|++|..+.+.++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~------------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5678888999999888765 4677777777642 232236678889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHH
Q 017532 284 ERDYNDIVAINNKAL 298 (370)
Q Consensus 284 ~~~p~~~~~~~nla~ 298 (370)
+..|+|..+..-...
T Consensus 106 ~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 106 EHERNNKQVGALKSM 120 (134)
T ss_dssp TTCTTCHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHH
Confidence 999999887655443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.012 Score=55.31 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
++..+|..|++.|+++.|...|.++..... ......+..+.++++..||+..+..++.++..+... ..+++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-------~~d~~ 205 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-------GGDWE 205 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-------CCCTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-------CCCHH
Confidence 456789999999999999999999976543 234567788889999999999999999999877655 23455
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+.......|..++..++|.+|...|-.++...
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 545666778999999999999999999987654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.047 Score=51.58 Aligned_cols=106 Identities=10% Similarity=0.037 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
+++...|+.++...|++.+|..+++.+..... ..+ ...+....++++..+|+.+|...+.++.......
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~------ 210 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN------ 210 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc------
Confidence 35566889999999999999999999864322 112 3566788999999999999999999985432221
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
...|..+...+...|..+...++|.+|..+|..+...
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4567777888888999999999999999999999765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.13 Score=39.92 Aligned_cols=79 Identities=13% Similarity=-0.024 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 207 LDPILVSKLGFIQMQVGDLE---GAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~---~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
....+.++.|+++.+..+.+ +++..++...+.. +.. +.+..+.+|..+++.|+|++|..+.+.++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---------~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---------ESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---------CST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---------ccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 67788899999999887654 6777777776421 111 25667889999999999999999999999
Q ss_pred hhCCCCHHHHHHHH
Q 017532 284 ERDYNDIVAINNKA 297 (370)
Q Consensus 284 ~~~p~~~~~~~nla 297 (370)
+.+|+|..+.....
T Consensus 105 ~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 105 EHERNNKQVGALKS 118 (144)
T ss_dssp HTCCCCHHHHHHHH
T ss_pred hcCCCcHHHHHHHH
Confidence 99999987765443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.046 Score=42.88 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCH------HHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 179 CLIGYHLSSKEY------NVCFDLMNESIGRGNGLD--------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 179 ~la~~~~~~g~~------~~A~~~~~~~l~~~~~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
.....+-..|+. +.-+..|++++..-| .. ..+|..-+ .+...+|.++|.+.|+.++++.+.
T Consensus 18 ~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKk--- 92 (161)
T 4h7y_A 18 SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARANCKK--- 92 (161)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTT---
T ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHH---
Confidence 334445555887 788899999988776 21 23333334 335669999999999999986222
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD 305 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~ 305 (370)
+ +.+|+..|.--.++|+...|.+.+.+++...|.....+. .|+.-++.|+
T Consensus 93 ---------F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le-~a~~nl~~~~ 142 (161)
T 4h7y_A 93 ---------F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE-IALRNLNLQK 142 (161)
T ss_dssp ---------B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH-HHHHHHHTTC
T ss_pred ---------H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH-HHHHhhhcCC
Confidence 2 667888999999999999999999999999998765543 3444455544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.079 Score=53.12 Aligned_cols=128 Identities=12% Similarity=0.086 Sum_probs=86.6
Q ss_pred hcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcC-CHHHHHHHHHHHHHHh----hcCC-ccCCc-cchHHHH
Q 017532 186 SSKE-YNVCFDLMNESIGRGNGLDPILVSKLGFIQM--QVG-DLEGAKKSFNRVEEML----NEGK-FEDGL-LSEVEFR 255 (370)
Q Consensus 186 ~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~--~~g-~~~~A~~~~~~a~~l~----~~~~-~~~~~-~~~p~~~ 255 (370)
..++ ++.|+.+++++...+| .... ++..+.+.. +.+ +--+|++...++++-. .+.. .+... ...|..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p-~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~- 336 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDP-IHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM- 336 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCG-GGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH-
T ss_pred ccccHHHHHHHHHHHHHhhCC-chhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc-
Confidence 3455 6889999999999888 4433 222233222 222 3346777777665321 1100 00000 001111
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
...+...+.-++.+|+|+-|+++-++++..-|.+...|+.|+.||..+|+++.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445556777888999999999999999999999999999999999999999999888876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.15 Score=47.25 Aligned_cols=106 Identities=8% Similarity=-0.035 Sum_probs=77.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEG-AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
..|+.+.|...+++++.... ...- -.. ..+.+-. ....+++.. ..+...++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~r-G~~L--~~~-----~~~~w~~~~r~~l~~~~-------------------~~a~~~~~~ 179 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWR-GPVL--DDL-----RDFQFVEPFATALVEDK-------------------VLAHTAKAE 179 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCC-SSTT--GGG-----TTSTTHHHHHHHHHHHH-------------------HHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcC-CCCC--CCC-----CchhHHHHHHHHHHHHH-------------------HHHHHHHHH
Confidence 35889999999999998876 3210 000 0112211 122222222 233444677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.+...|++.+|+..+++++..+|-+..++..+..++...|+..+|++.|++.-+
T Consensus 180 ~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 180 AEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999988754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.11 Score=52.06 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
..++..-+..++.+|+|+-|+.+.++++...| .+...|+.|+.+|..+||++.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34666778889999999999999999999999 99999999999999999999999887764
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.041 Score=52.55 Aligned_cols=81 Identities=12% Similarity=-0.081 Sum_probs=71.8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.....+|.+....+.++.|..+|.+++.+.|.+...++.+|++....|+.-+|+-+|-+++.....+ ....-||..+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf---~~a~~nL~~~ 229 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF---PAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC---HHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC---hhHHHHHHHH
Confidence 3556799999999999999999999999999999999999999999999999999999998775545 7778888888
Q ss_pred HHhc
Q 017532 337 YELA 340 (370)
Q Consensus 337 yel~ 340 (370)
++..
T Consensus 230 f~~~ 233 (497)
T 1ya0_A 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.075 Score=53.69 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
..+..|++++|.++.+.+ ++...|..+|..+++.|+++.|+.+|.++-
T Consensus 661 ~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345679999999886543 678899999999999999999999999864
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=1.3 Score=43.43 Aligned_cols=124 Identities=6% Similarity=-0.135 Sum_probs=81.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPIL---VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+...+..++.+.|...+.............. ...++.-....+...++...+.++.. . ..+... .+
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~-~e 289 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---R-------SQSTSL-IE 289 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---T-------CCCHHH-HH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---c-------CCChHH-HH
Confidence 3344455688999999988865444122222 23344444445535677778877552 1 122222 22
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+ ..+. .+..|+++.|..+|+++-..........+-+|.++...|+.++|...|+++..
T Consensus 290 -~-~~r~-Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 -R-RVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -H-HHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -H-HHHH-HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 1233 45679999999999887654456788899999999999999999999998875
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.29 Score=42.30 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=86.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
.+++.|+.++|+..+...++..| .+......+..+++-.|+++.|.+.++.+.++.+.. .|. +..+ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~--------~~~--a~~y--r 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY--------LPG--ASQL--R 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG--------HHH--HHHH--H
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh--------hHH--HHHH--H
Confidence 46778999999999999999999 999999999999999999999999999999775541 111 1111 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-hh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 263 ALIYLVGKDYVSAVREYEECI-ER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l-~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+ .| +.++..+ +- .|.........+......|+.++|.+.-+++++..|..
T Consensus 73 ~lI--------~a-E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 73 HLV--------KA-AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHH--------HH-HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHH--------HH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 111 11 1122222 11 23334555566777788999999999999999998764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.35 Score=44.67 Aligned_cols=102 Identities=11% Similarity=-0.010 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC---CCC
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD---YND 289 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~---p~~ 289 (370)
..+|.+|+..|++.+|.+.+.+..+-+... .++....+++.....+|...|++.++...|.++.... +.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-------dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKL-------DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-------SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 478999999999999999999999876652 2334447888889999999999999999999986552 233
Q ss_pred H----HHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCC
Q 017532 290 I----VAINNKALCLM-YLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 290 ~----~~~~nla~~~~-~~g~~~~A~~~l~~al~~~p 321 (370)
| .....-|..++ ..++|.+|-..|-++.+...
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 4 23445678888 89999999999999976543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.52 Score=47.45 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=59.8
Q ss_pred hHhHHHHHHcCChHHHHH-HHHHhhhccccCCc-hHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 32 LASLQDLATRGSWRTIID-NVSRARSQSLLTQP-HHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~-~~~~~~~~~~~~~P-~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.-.....+..|+|++|.+ .+.. -| .+.. ..-+..+.+.|..++|....+..
T Consensus 603 ~~~~~~~~~~~~~~~a~~~~l~~--------i~~~~~~---~~~~~~l~~~~~~~~a~~~~~~~---------------- 655 (814)
T 3mkq_A 603 VLEFQTLTLRGEIEEAIENVLPN--------VEGKDSL---TKIARFLEGQEYYEEALNISPDQ---------------- 655 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHTGGG--------CCCHHHH---HHHHHHHHHTTCHHHHHHHCCCH----------------
T ss_pred HHHHhHHHHhCCHHHHHHHHHhc--------CCchHHH---HHHHHHHHhCCChHHheecCCCc----------------
Confidence 345677788999999886 3322 12 2212 21234577888888888644211
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
...|. +....|+.++|++....+ +....|+ .+|..+++.++
T Consensus 656 -------~~~f~-------~~l~~~~~~~A~~~~~~~-----------------~~~~~W~--------~la~~al~~~~ 696 (814)
T 3mkq_A 656 -------DQKFE-------LALKVGQLTLARDLLTDE-----------------SAEMKWR--------ALGDASLQRFN 696 (814)
T ss_dssp -------HHHHH-------HHHHHTCHHHHHHHHTTC-----------------CCHHHHH--------HHHHHHHHTTC
T ss_pred -------chhee-------hhhhcCCHHHHHHHHHhh-----------------CcHhHHH--------HHHHHHHHcCC
Confidence 01111 113446666665532111 1123443 68888888999
Q ss_pred HHHHHHHHHHH
Q 017532 190 YNVCFDLMNES 200 (370)
Q Consensus 190 ~~~A~~~~~~~ 200 (370)
++.|+..|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999987
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.75 Score=36.80 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=82.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
+-.+|+.++-+-.-+.. ..++....++.++...|++..|.-++...- . .-+......|
T Consensus 14 kY~dYdt~~fLsa~L~~----~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN------------T------~Ts~YYk~LC 71 (242)
T 3kae_A 14 RYRDYETAIFLAACLLP----CKPEYRMLMSIVLYLNGEYTRALFHLHKLN------------T------CTSKYYESLC 71 (242)
T ss_dssp HTTCHHHHHHHHHHHC--------CTHHHHHHHHHHTTCHHHHHHHHHTCC------------B------HHHHHHHHHH
T ss_pred hcccccHHHHHHHHHcc----CChHHHhhhhhhhhhcchHhHHHHHHHhcc------------h------HHHHHHHHHH
Confidence 44778877655443333 223445666778888999988877664332 1 3344568999
Q ss_pred HHHcCCHHHHHHHHHHHHhh-----------------CCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 266 YLVGKDYVSAVREYEECIER-----------------DYNDIV-AINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~-----------------~p~~~~-~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+.++|..|+..++..++- +|.|.. .++.+|..+-.+|.-+||+.++.......|-+
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 99999999999999999943 234444 45567888899999999999999998888754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.2 Score=47.77 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+..||.+....+.++.|..+|.+|..+.|+. +..++.+|.+....|+.-+|+-+|.+++......+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-------------G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-------------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-------------CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence 45678999999999999999999999776653 55677899999999999999999999998776677
Q ss_pred HHHHHHHHHHHH
Q 017532 291 VAINNKALCLMY 302 (370)
Q Consensus 291 ~~~~nla~~~~~ 302 (370)
.+..|+...+.+
T Consensus 221 ~a~~nL~~~f~~ 232 (497)
T 1ya0_A 221 AASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 777777666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.22 Score=45.98 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 171 KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
+....+...++..+...|++.+|+..+..++..+| .+..++..+..++...|+..+|+..|++..+..
T Consensus 168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33356667888899999999999999999999999 999999999999999999999999999987643
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.14 Score=44.29 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+++.|+.++|++.....++.+|.|......+...+|-.|+++.|.+.++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45688999999999999999999999999999999999999999999999999999986
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.92 E-value=1.6 Score=40.96 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh---hC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE---RD 286 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~---~~ 286 (370)
.+...|+.++...|++.+|...++....=... ..+...+.+.+.....+++..+++..|...++++.. ..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~-------~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYG-------SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-------SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 45578999999999999999999998643222 123333477888899999999999999999999742 23
Q ss_pred CCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 287 YNDI----VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 287 p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+.++ ..+...|..+...++|.+|-.+|..+...
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3333 45667888999999999999999988764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.51 Score=44.19 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--C
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER--D 286 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~ 286 (370)
..++..+|..|...||+++|.+.|.++...+.... . +...+...-.+++..+++..+...++++-.. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-------~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-------A---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-------S---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-------H---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 34678899999999999999999999987665431 1 1556777778888999999999999998654 2
Q ss_pred CCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 287 YNDIV----AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 287 p~~~~----~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..++. .....|..+...++|.+|-..|-.++.-...
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 22332 3344577788899999999999988766443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.14 E-value=1.1 Score=42.53 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
+.+++.+...|+..+.|++|..+..+..-... ..+ ...++.+|+++.-.++|.+|.+++..|++.++.. .
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~------~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN------S 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS------S
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------h
Confidence 46777888899999999999999999853211 011 2345788999999999999999999999776653 1
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCCc
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND---IVAINNKALCLMYLRDL---SDSIKVLENALERVPTV 323 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~---~~~~~nla~~~~~~g~~---~~A~~~l~~al~~~p~~ 323 (370)
....++..++..+-.+-+-+|+..+ ...|+ .|.. ...|..++.++ +.|++ +.+++..+.....+...
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~-----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty 377 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGDIPE-LSFFH-----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDTY 377 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCCCC-HHHHT-----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCT
T ss_pred hhhhHHHHHHHHHHhHHhhcCCCCC-hHHhh-----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccCChh
Confidence 1222223444344445455688765 22222 2332 23456666554 55664 44555555566666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.36 E-value=3.2 Score=44.00 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-----
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF----- 254 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~----- 254 (370)
+...+...+.++.|..+. ..-+ .++...+.+|++++..|++++|..+|+++..-...... ........
T Consensus 818 l~~~l~~~~~~~~~~~l~----~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~--l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLI----GWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS--QFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHH----HHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC--SCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHh----hhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch--hhhhhcccccccc
Confidence 444555667666654432 3334 56667799999999999999999999997421111000 00000000
Q ss_pred -------HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH----HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 255 -------RNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDI----VAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 255 -------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~----~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
...-+.....++...|.++.+++.-+.+++.. +++. ..|.++=..++..|+|++|-..+-..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 01234556677788899999999999999865 3443 25777888899999999998888654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.19 E-value=7.7 Score=41.07 Aligned_cols=124 Identities=7% Similarity=-0.128 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C---------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRG-N---------------------GLDPILVSKLGFIQMQVGDLEGAKKS 231 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~ 231 (370)
....+.+|.+++..|++++|..+|+++-..- . ..-+..+..+..++.+.|-++.+++.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3345889999999999999999998873211 1 01123456778899999999999999
Q ss_pred HHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 232 FNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 232 ~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
-+.|++.... .+++.....|.++=..+...|+|++|...+...-.. ..-...+..+...++..|+.
T Consensus 922 a~lAi~~~~~--------~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 922 SLLADASKET--------DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHCCS--------CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccC--------CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCCh
Confidence 9999975432 344444566777777888999999998777554221 12234455555555555553
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.91 E-value=1.2 Score=42.48 Aligned_cols=133 Identities=10% Similarity=-0.043 Sum_probs=59.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh---CCC-------CCCHHHHHHHHHHHHHcCCHHHHHHH----------HHHHHHHhhc
Q 017532 182 GYHLSSKEYNVCFDLMNESIG---RGN-------GLDPILVSKLGFIQMQVGDLEGAKKS----------FNRVEEMLNE 241 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~---~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~----------~~~a~~l~~~ 241 (370)
..++..++|++|..+...++. ... .-....|+..++++...|+....... +-.+.+...-
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345678899999888776652 111 02345566677777778877654322 2222221111
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND-------IVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-------~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
..+.+.++..+..+=..|...+.|+.|.....++. .|.. ...++.+|.++...++|.+|.+.+.
T Consensus 224 -------r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 224 -------KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp -------CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 12333336667777888899999999999999884 3322 3456778999999999999999999
Q ss_pred HHHHhCCCc
Q 017532 315 NALERVPTV 323 (370)
Q Consensus 315 ~al~~~p~~ 323 (370)
.|+...|..
T Consensus 295 ~A~rkap~~ 303 (523)
T 4b4t_S 295 AAIRKAPHN 303 (523)
T ss_dssp HHTSSCSCS
T ss_pred HHHHhCCcc
Confidence 999988764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.41 E-value=3.9 Score=32.91 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
.|+...+. +.++.|+++.|.+..++.. + ...|..+|...+..|+++-|..+|+++
T Consensus 6 ~D~~~rF~---LAL~lg~l~~A~e~a~~l~--------------~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFD---LALEYGNLDAALDEAKKLN--------------D----SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHH---HHHHTTCHHHHHHHHHHHC--------------C----HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHH---HHHhcCCHHHHHHHHHHhC--------------C----HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45555555 4568999999998876542 1 345888999999999999999999987
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.65 E-value=21 Score=36.77 Aligned_cols=158 Identities=11% Similarity=0.101 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPIL----VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~----~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++..|+.+.+-.+.+.+.... ++.. ...+|..|.-.|+...-...+..+.. ..+.+.+..
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-----------d~~d~VRra 597 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-----------DSNDDVRRA 597 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-----------CSCHHHHHH
T ss_pred HHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-----------CCcHHHHHH
Confidence 33444566666665555554422 2222 23456666677774333334544442 122334445
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHhCCH-HHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL--MYLRDL-SDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~--~~~g~~-~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
+...+|.+ ..|+.+.+...++.... -.++.+.+..+.++ ...|.. .+++..+.++. .+++..+...+++-|+
T Consensus 598 AViaLGlI--~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~-~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 598 AVIALGFV--LLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT-KDPVDFVRQAAMIALS 672 (963)
T ss_dssp HHHHHHHH--TSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH-TCSSHHHHHHHHHHHH
T ss_pred HHHHHHhh--ccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc-cCCCHHHHHHHHHHHH
Confidence 55555555 44444333333332222 23455555444333 233333 67888887775 4777666677777887
Q ss_pred HHHHhccCCchhhHHHHHHHHhhh
Q 017532 335 SMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
.+-.-..+....+-..+++.+..+
T Consensus 673 ~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 673 MILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp HHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHhcCCccccchHHHHHHHHHHHH
Confidence 774311111111456666766654
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.10 E-value=9.9 Score=34.87 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=70.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGN----------------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.+.....+.++|+..++++...-. .........+++.|+..|+.++|..+++++.......
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~--- 160 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKK--- 160 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS---
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc---
Confidence 345567899999999988743210 0112344778999999999999999999998765542
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
...+|......+...+..+...++|.++...+-..+.
T Consensus 161 --~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 161 --DSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp --CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1345555566777788888899999988777666654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.95 E-value=33 Score=33.45 Aligned_cols=133 Identities=7% Similarity=-0.086 Sum_probs=88.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------hhcCCcc---
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM-----------LNEGKFE--- 245 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l-----------~~~~~~~--- 245 (370)
++...++.|+++.|...++.+-.... ......+.+|+.+...|+.++|...|+++..- .......
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~ 369 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID 369 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC
Confidence 33345567999999999988755444 56778899999999999999999999986521 0000000
Q ss_pred CC-ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 246 DG-LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 246 ~~-~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
.. ......+.....+..+..++..|...+|...+..++... +..-...++......|.++.++....+
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00 000001111123446778889999999999998887642 234444667777888888888766543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.87 E-value=21 Score=36.73 Aligned_cols=162 Identities=10% Similarity=-0.041 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GL---DP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~---~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
+++.+|.++. |..++++.++...+.... .. +. -+...||.++.-.|+ +++.+.+..++. +
T Consensus 415 AllaLGli~a--g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~---d----- 483 (963)
T 4ady_A 415 SLYGLGLIYA--GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY---N----- 483 (963)
T ss_dssp HHHHHHHHTT--TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH---T-----
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh---c-----
Confidence 3344444444 333467777776664321 00 11 223456666665565 456666666653 1
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
.++.....+.+.+|.++.-.|+-+-....+..+.+...++..-..-+|..+...|+.+.+-..++.+.. +.++...
T Consensus 484 ---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~~dp~vR 559 (963)
T 4ady_A 484 ---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-SDESLLR 559 (963)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-CSCHHHH
T ss_pred ---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-CCCHHHH
Confidence 122222355667888888888866555555555554433333334556666678888776666655443 4444344
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHH
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~ 354 (370)
....+-++..|- ..+...+-..+|+.
T Consensus 560 ygaa~alglAya--GTGn~~aIq~LL~~ 585 (963)
T 4ady_A 560 YGGAFTIALAYA--GTGNNSAVKRLLHV 585 (963)
T ss_dssp HHHHHHHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 444444544442 33444444445543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 370 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 5e-06
Identities = 29/166 (17%), Positives = 46/166 (27%), Gaps = 14/166 (8%)
Query: 159 AEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFI 218
A S V L + ++ D +I P L
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANA 280
Query: 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVRE 278
+ G + A+ +N L N A I + AVR
Sbjct: 281 LKEKGSVAEAEDCYNTA-------------LRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 279 YEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324
Y + +E A +N A L L +++ + A+ PT A
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 10/64 (15%), Positives = 23/64 (35%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
A D+ +A R + ++ ++ + + R L S A+++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 321 PTVA 324
P +A
Sbjct: 64 PLLA 67
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273
+L + Q GD E A++ ++ E LL + I+ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWR--QEPDNTGVLL-----------LLSSIHFQCRRLD 50
Query: 274 SAVREYEECIERDYNDIVAINNKALCLMY 302
+ I+++ A +N
Sbjct: 51 RSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 9e-05
Identities = 15/94 (15%), Positives = 27/94 (28%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320
+ L L D +AV +E +++D + A +I L LE
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 321 PTVALNETLVVNLCSMYELAYVNHSDIKRTLSSW 354
P + + L ++ L
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYT 117
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.79 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.66 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.63 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.59 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.56 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.46 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.39 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.34 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.94 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.75 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.3 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.2 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.48 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.67 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.48 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 89.18 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 83.82 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-22 Score=185.77 Aligned_cols=148 Identities=18% Similarity=0.093 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
...+..+|.++...|++++|+..|+++++.+| .++.++..+|.++...|++++|++.|+++....+..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 304 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH----------- 304 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc-----------
Confidence 45666777777778888888888888888777 777777778888888888888888887777543331
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
...+..+|.++...|++++|++.|+++++.+|+++.+++++|.++...|++++|++.|+++++++|++ ..++++|
T Consensus 305 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l 379 (388)
T d1w3ba_ 305 --ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNM 379 (388)
T ss_dssp --HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC---HHHHHHH
T ss_pred --chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 44566677888888888888888888888888888888888888888888888888888888888876 6677777
Q ss_pred HHHHH
Q 017532 334 CSMYE 338 (370)
Q Consensus 334 ~~lye 338 (370)
+.+|.
T Consensus 380 g~~~~ 384 (388)
T d1w3ba_ 380 GNTLK 384 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-21 Score=178.64 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=202.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
.......+.|+|++|++.+.+++.. +|.+... +...+.++.++|++++|...++++..+++..
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~----~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------ 66 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQ----EPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL------------ 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------
Confidence 4456788999999999999997543 5765443 3445788999999999999999886554211
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH-----------HH------------H------------
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL-----------AR------------K------------ 157 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~-----------~~------------~------------ 157 (370)
+ ......+.+....|+.++|+..+........... .. .
T Consensus 67 ------~-~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (388)
T d1w3ba_ 67 ------A-EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 139 (388)
T ss_dssp ------H-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH
T ss_pred ------H-HHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 1122234455677888888887765533210000 00 0
Q ss_pred -----------------------------------------hhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCH
Q 017532 158 -----------------------------------------LAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 158 -----------------------------------------~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~ 190 (370)
..+....+...+...+ ..++..+|.++...|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 219 (388)
T d1w3ba_ 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred cccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccH
Confidence 0001112222222222 35667777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++|+..++++....+ .....+..+|.++...|++++|+..|++++++.++. ..++.++|.++...|
T Consensus 220 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 220 DRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-------------PDAYCNLANALKEKG 285 (388)
T ss_dssp THHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-------------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHcC
Confidence 888888888877777 777777788888888888888888888888654332 456778888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHH
Q 017532 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRT 350 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ 350 (370)
++++|++.|++++...|.+...+..+|.++...|++++|++.|+++++.+|++ ..++++++.+|.. .+..+++..
T Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--~g~~~~A~~ 360 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQ--QGKLQEALM 360 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHT--TTCCHHHHH
T ss_pred CHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--cCCHHHHHH
Confidence 88888888888888888888888899999999999999999999999999987 7788899988874 344667777
Q ss_pred HHHHHhhhCCCC
Q 017532 351 LSSWIGRVAPDD 362 (370)
Q Consensus 351 ll~~~~~~~~d~ 362 (370)
.+++.-+..|++
T Consensus 361 ~~~~al~l~P~~ 372 (388)
T d1w3ba_ 361 HYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHTTCTTC
T ss_pred HHHHHHHhCCCC
Confidence 777666666664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.7e-22 Score=179.80 Aligned_cols=256 Identities=13% Similarity=0.063 Sum_probs=191.0
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.+.+........+++.|+|++|+..+++++. .+|.+...+.. .+.++...|++++|...+.++..+++-.
T Consensus 17 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 86 (323)
T d1fcha_ 17 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQY-LGTTQAENEQELLAISALRRCLELKPDN----- 86 (323)
T ss_dssp TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHH-HHHHHHHcCChHHHHHHHHhhhcccccc-----
Confidence 4666667888999999999999999999764 46886555544 5889999999999999999987654311
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL 185 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (370)
. ......+.+....|+.++|++.+...+...+......... .....+.. ..........+.
T Consensus 87 -----------~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~ 147 (323)
T d1fcha_ 87 -----------Q---TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA---EEGAGGAG--LGPSKRILGSLL 147 (323)
T ss_dssp -----------H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------------CTTHHHH
T ss_pred -----------c---cccccccccccccccccccccchhhHHHhccchHHHHHhh---hhhhhhcc--cccchhhHHHHH
Confidence 0 1122234445678999999888877654322110000000 00000000 001112223345
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
..+.+.+|+..|.++++.+| ..++.++..+|.++...|++++|+.+|++++...++ . ..++.++|.
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------~-~~~~~~lg~ 214 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------------D-YLLWNKLGA 214 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------C-HHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc------------c-ccchhhhhh
Confidence 56788999999999999988 235678899999999999999999999999975443 2 667889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++...|++++|++.|+++++.+|+++.+++++|.++...|++++|++.|+++++++|+.
T Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 215 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999999999999999999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.9e-18 Score=152.92 Aligned_cols=211 Identities=9% Similarity=-0.070 Sum_probs=167.9
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+......|+.++|+..+..+++..+.. ..+++.+|.++...|++++|+..++++++.+|
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~~--------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 84 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPKH--------------------MEAWQYLGTTQAENEQELLAISALRRCLELKP- 84 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-
Confidence 334467899999999888876433221 24567899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc------------C---Cc----------------------c
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE------------D---GL----------------------L 249 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~------------~---~~----------------------~ 249 (370)
.+...+..+|.++...|++++|++.|++++.+.+..... . .. .
T Consensus 85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765542110 0 00 0
Q ss_pred chHHH-HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHH
Q 017532 250 SEVEF-RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNET 328 (370)
Q Consensus 250 ~~p~~-~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 328 (370)
.+|+. ...++..+|.++...|++++|+..|++++..+|+++.+++++|.++...|++++|++.|+++++.+|++ ..
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc---HH
Confidence 00000 034567889999999999999999999999999999999999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 329 LVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 329 ~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
++++++.+|....+ .+.+.......-...|++.
T Consensus 242 a~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 242 SRYNLGISCINLGA--HREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCcCh
Confidence 99999999985443 5666666665555444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1e-17 Score=151.17 Aligned_cols=147 Identities=8% Similarity=0.013 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 175 FVLNCLIGYHLSSK-EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 175 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+++.+|.++...| ++++|+..++++++.+| .+..++..+|.++..+|++++|++.|++++++.+++
T Consensus 78 ~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n----------- 145 (315)
T d2h6fa1 78 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----------- 145 (315)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-----------
Confidence 56678899988876 59999999999999999 999999999999999999999999999999765543
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHhCCCcchhH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD------LSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~------~~~A~~~l~~al~~~p~~~~~~ 327 (370)
..+|.++|.++...|++++|++.|+++++++|.+..+|+++|.++...++ +++|++.+.++++.+|++ .
T Consensus 146 --~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~---~ 220 (315)
T d2h6fa1 146 --YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN---E 220 (315)
T ss_dssp --HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC---H
T ss_pred --hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc---h
Confidence 67899999999999999999999999999999999999999999988877 689999999999999998 8
Q ss_pred HHHHHHHHHHH
Q 017532 328 TLVVNLCSMYE 338 (370)
Q Consensus 328 ~~~~nl~~lye 338 (370)
.++++++.++.
T Consensus 221 ~~~~~l~~ll~ 231 (315)
T d2h6fa1 221 SAWNYLKGILQ 231 (315)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88899998875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.2e-17 Score=148.91 Aligned_cols=149 Identities=8% Similarity=0.049 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG-DLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.++..++.++.+.+.+++|+..++++++++| .+..+|+.+|.++...| ++++|+.+|++++++.++.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~----------- 111 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----------- 111 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-----------
Confidence 4556778889999999999999999999999 99999999999999987 5999999999999765543
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
..+|.++|.++...|++++|++.|+++++++|.+..+|+++|.++...|++++|++.++++++++|++ ..+++++
T Consensus 112 --~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n---~~a~~~r 186 (315)
T d2h6fa1 112 --YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN---NSVWNQR 186 (315)
T ss_dssp --HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred --hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc---HHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999998 7888999
Q ss_pred HHHHHhc
Q 017532 334 CSMYELA 340 (370)
Q Consensus 334 ~~lyel~ 340 (370)
+.++...
T Consensus 187 ~~~l~~~ 193 (315)
T d2h6fa1 187 YFVISNT 193 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8887643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=6.7e-17 Score=140.64 Aligned_cols=130 Identities=15% Similarity=0.028 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.+++.+|.+|...|++++|+..|+++++++| +++.+++.+|.++..+|++++|+..|++++++.|+.
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------- 104 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------- 104 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh-----------
Confidence 47788999999999999999999999999999 999999999999999999999999999999765542
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
..++.++|.+++..|++++|++.|+++++.+|++......++.+....+..+.+........
T Consensus 105 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 105 --NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp --THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 56789999999999999999999999999999988776666666555555444444433333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=6.1e-16 Score=129.08 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
+.|..+...|+|+.|+..|+++ .+ .++.+++++|.++..+|++++|+++|++++++.++ . ..+
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i---~~-~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~------------~-~~a 72 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV---QD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------L-AVA 72 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS---SS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------C-HHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhc---CC-CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh------------h-hhh
Confidence 5688899999999999999864 55 67889999999999999999999999999976444 3 778
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYND----------------IVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~----------------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+.++|.+++.+|++++|++.|++++...|.+ ..+++|+|.++.+.|++++|++.+++++.+.|+
T Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999875432 478899999999999999999999999999997
Q ss_pred c
Q 017532 323 V 323 (370)
Q Consensus 323 ~ 323 (370)
.
T Consensus 153 ~ 153 (192)
T d1hh8a_ 153 P 153 (192)
T ss_dssp G
T ss_pred c
Confidence 5
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6.9e-16 Score=117.95 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
+...|..++..|++++|+..|++++++.|.. ..++.++|.++...|++++|+..|++++.++|+++.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 72 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 72 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-------------hhhhhcccccccccccccccchhhhhHHHhccchhh
Confidence 4556888888888888888888888654432 566788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+|+++|.++..+|++++|+..|+++++.+|++ ..+..++..+
T Consensus 73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~l 114 (117)
T d1elwa_ 73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANN---PQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence 88888888888888888888888888888887 6666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.9e-15 Score=115.48 Aligned_cols=110 Identities=16% Similarity=0.066 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
+...|..++..|+|++|+..|+++++.+| .++.+++.+|.++..+|++++|+..|++++++.++. .
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------------~ 71 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-------------G 71 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhccch-------------h
Confidence 34678999999999999999999999999 999999999999999999999999999999775542 6
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
.++.++|.++..+|++++|+..|+++++.+|+++.++.+++.+.
T Consensus 72 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999988764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.7e-15 Score=121.12 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
+.+...|+.+++.|+|++|+..|+++++.+| .++.++..+|.+++.+|++++|+..|++++++.+..
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~------------ 77 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 77 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc------------
Confidence 3345678888999999999999999999999 899999999999999999999999999999764442
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--HhCCHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM--YLRDLSDSIKV 312 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~--~~g~~~~A~~~ 312 (370)
..++..+|.+++..|++++|+..|++++.++|+++.++..++.+.. ..+.+++|+..
T Consensus 78 -~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 78 -IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6678889999999999999999999999999999988888776643 33445555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=6.6e-15 Score=127.72 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 188 KEYNVCFDLMNESIGRGNG---LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
.+++.|+..+++++...+. ....+++.+|.+|.+.|++++|+..|++++++.|+. ..++.++|.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-------------~~a~~~lg~ 79 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-------------PEVFNYLGI 79 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-------------HHHHhhhch
Confidence 4567788888888876541 244688999999999999999999999999875553 567899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
++...|++++|++.|+++++++|+++.++.++|.++..+|++++|++.++++++.+|++ ......++..+.
T Consensus 80 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~ 150 (259)
T d1xnfa_ 80 YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND---PFRSLWLYLAEQ 150 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc---HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 444445554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=7.7e-15 Score=118.34 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
..+...|..+++.|++++|+.+|++++++.|+. ..+|.++|.+++..|++++|+..|+++++++|++
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~ 77 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 77 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhh-------------hhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence 345677999999999999999999999765543 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
+.+++++|.++..+|++++|+..+++++.++|++ ..+...+..+..
T Consensus 78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~---~~~~~~l~~~~~ 123 (159)
T d1a17a_ 78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD---KDAKMKYQECNK 123 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 666666665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.2e-14 Score=118.57 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc---cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL---LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~---~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
...|..+++.|++++|+..|++++++.+........ ...+ ....++.++|.||+..|++++|+..+++++.++|++
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~ 95 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA-LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 95 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhch-hHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence 344555555555555555555555554332110000 0111 125667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
+.+++++|.++..+|++++|+..|+++++++|++ ..+...++.++....+
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n---~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRR 145 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 7788888888765544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=8.3e-14 Score=124.87 Aligned_cols=287 Identities=11% Similarity=0.017 Sum_probs=198.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
...++..|++++|+.++++++...-..++......+...+.++...|++++|...+..+..+.+.. .
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~ 85 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-------------D 85 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------------T
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------c
Confidence 455789999999999999986543211222122334445788999999999999998885432100 0
Q ss_pred CcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017532 115 GSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194 (370)
Q Consensus 115 ~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 194 (370)
............+.+....|+...+...+...+........... .....++..+|.++...|+++.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~------------~~~~~~~~~la~~~~~~~~~~~a~ 153 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------------PMHEFLVRIRAQLLWAWARLDEAE 153 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------------THHHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchh------------hHHHHHHHHHHHHHHHhcchhhhH
Confidence 00000011112334446678888888877776654433211000 011245567899999999999999
Q ss_pred HHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 195 DLMNESIGRGNG----LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 195 ~~~~~~l~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
..+.+++...+. .....+...+..+...|++.++...+.++..+..... ...+.. ..++...|.++...|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 154 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-----YHSDWI-SNANKVRVIYWQMTG 227 (366)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-----CCHHHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-----ccCchH-HHHHHHHHHHHHhcc
Confidence 999999887651 2345668889999999999999999999998876531 223333 667788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CcchhHHHHHHHHHHHHhccCC
Q 017532 271 DYVSAVREYEECIERDYND----IVAINNKALCLMYLRDLSDSIKVLENALERVP---TVALNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~~~nl~~lyel~~~~ 343 (370)
++++|...+++++...|.+ ...+.++|.++...|++++|+..+++++.... .......++++++.+|....
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-- 305 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG-- 305 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC--
Confidence 9999999999998886543 46778899999999999999999999986532 11223567788999987543
Q ss_pred chhhHHHHHHH
Q 017532 344 HSDIKRTLSSW 354 (370)
Q Consensus 344 ~~~~~~~ll~~ 354 (370)
..+++...++.
T Consensus 306 ~~~~A~~~l~~ 316 (366)
T d1hz4a_ 306 RKSDAQRVLLD 316 (366)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 35555555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.59 E-value=2.5e-14 Score=116.40 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC---ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG---LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+...|..++..|++++|+..|++++.+.+....... ...++ ....++.++|.|++.+|++++|+..+++++.++|+
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~ 96 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES-FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 96 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcch-hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence 444566666666666666666666655443211000 00111 12567888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
+..+++++|.++..+|++++|+..|+++++++|++ ..+...+..+....
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n---~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQIFMCQKKA 145 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 66777777776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=6e-15 Score=123.12 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
+...|..++..|+|++|+..|++++..+| .++.+++++|.+|.+.|++++|+.+|++++++ +|+. .
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------------~p~~-~ 72 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL------------DGQS-V 72 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------------CTTC-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh------------CCCc-H
Confidence 44556666666666666666666666666 66666666666666666666666666666532 2222 4
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
.++.++|.+++.+|++++|+..|+++++++|++...+...+....
T Consensus 73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455566666666666666666666666655544433333333333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=4.9e-14 Score=125.03 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=141.6
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~- 208 (370)
...|++++|++.+...+..+...-. .. ..+.++.++|.+|..+|++++|+..|++++...+. .+
T Consensus 48 ~~~~~~~~A~~~y~kA~~~~~~~~~------~~--------~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~ 113 (290)
T d1qqea_ 48 RLRKELNLAGDSFLKAADYQKKAGN------ED--------EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (290)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTC------HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCC------CH--------HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence 4568889999988887755443210 00 12467788999999999999999999999887651 11
Q ss_pred ---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 209 ---PILVSKLGFIQMQ-VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 209 ---~~~~~~lg~~~~~-~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
..++..+|.++.. .|++++|+++|++++.+.+.. ...+.. ..++.++|.++..+|+|++|+..|++++.
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~------~~~~~~-~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD------QSVALS-NKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT------TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc------Cchhhh-hhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 4567888988865 699999999999999887653 223333 77889999999999999999999999999
Q ss_pred hCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh--HHHHHHHHHHHH
Q 017532 285 RDYNDI-------VAINNKALCLMYLRDLSDSIKVLENALERVPTVALN--ETLVVNLCSMYE 338 (370)
Q Consensus 285 ~~p~~~-------~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~~~~nl~~lye 338 (370)
..|.+. ..+.+.+.++...|+++.|...++++++.+|.+... ...+.++...|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred hCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 987654 456789999999999999999999999999875321 234556666665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=1.6e-14 Score=130.66 Aligned_cols=259 Identities=11% Similarity=-0.015 Sum_probs=175.9
Q ss_pred HHHHHHcCCh-HHHHHHHHHhhhccccCCchHHHHHHHHHHHHHh----------hhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 35 LQDLATRGSW-RTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALM----------KLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 35 l~~l~~~g~~-~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~----------~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
+....+.|.+ ++|+..+.+++. .+|.+.. .|.++...+. ..|++++|+..++.+...++-.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~----~~P~~~~-a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~--- 106 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILG----ANPDFAT-LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--- 106 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHH----HCTTCHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHhcccccHHHHHHHHHHHH----HCCCcHH-HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc---
Confidence 3444556655 899999999754 4688643 4444444333 3455788888888875443211
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
...|..+. ........++..+++..+...+...+.. .. .....++.+
T Consensus 107 -------------~~~~~~~~-~~~~~~~~~~~~~a~~~~~~al~~~~~~------------~~-------~~~~~~~~~ 153 (334)
T d1dcea1 107 -------------YGTWHHRC-WLLSRLPEPNWARELELCARFLEADERN------------FH-------CWDYRRFVA 153 (334)
T ss_dssp -------------HHHHHHHH-HHHHTCSSCCHHHHHHHHHHHHHHCTTC------------HH-------HHHHHHHHH
T ss_pred -------------HHHHHHhh-HHHHHhccccHHHHHHHHHHHHhhCchh------------hh-------hhhhHHHHH
Confidence 11222121 1112233445566666665554332211 11 123456778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc--------cCCc-------
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF--------EDGL------- 248 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~--------~~~~------- 248 (370)
+...+++++|+..+++++..+| .+..+++.+|.++..+|++++|+..+++++.+.+.... ....
T Consensus 154 ~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~ 232 (334)
T d1dcea1 154 AQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (334)
T ss_dssp HHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 8889999999999999999999 99999999999999999988776666554443322100 0000
Q ss_pred ---cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 249 ---LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 249 ---~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
..+|.. ...+..+|.++...|++.+|+..|.+++..+|++..++.++|.++...|++++|+++|+++++++|..
T Consensus 233 ~~l~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~-- 309 (334)
T d1dcea1 233 RWLLGRAEP-LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-- 309 (334)
T ss_dssp HHHHSCCCC-SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG--
T ss_pred HHHHhCcch-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc--
Confidence 001111 22334678899999999999999999999999999999999999999999999999999999999976
Q ss_pred hHHHHHHHHHHHHh
Q 017532 326 NETLVVNLCSMYEL 339 (370)
Q Consensus 326 ~~~~~~nl~~lyel 339 (370)
...+.+|+..+.+
T Consensus 310 -~~y~~~L~~~~~~ 322 (334)
T d1dcea1 310 -AAYLDDLRSKFLL 322 (334)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhH
Confidence 6677788777764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=3.3e-15 Score=124.73 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
+++..+...|..+++.|++++|+.+|++++.+.|.+ ..++.++|.+|+..|++++|+..|++++.++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-------------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~ 68 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------------AVYYTNRALCYLKMQQPEQALADCRRALELD 68 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 456677888999999999999999999999875543 6678999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+++.+|+++|.++..+|++++|+..|+++++++|+.
T Consensus 69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999998753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.56 E-value=3.1e-14 Score=115.92 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=78.6
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHH
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETL 329 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 329 (370)
.+|.. ...+.++|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++ ..+
T Consensus 72 ~~~~~-~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n---~~~ 147 (169)
T d1ihga1 72 LQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED---KAI 147 (169)
T ss_dssp GHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH
T ss_pred hChhh-HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHH
Confidence 35555 77889999999999999999999999999999999999999999999999999999999999999997 777
Q ss_pred HHHHHHHHHh
Q 017532 330 VVNLCSMYEL 339 (370)
Q Consensus 330 ~~nl~~lyel 339 (370)
...+..++..
T Consensus 148 ~~~l~~~~~~ 157 (169)
T d1ihga1 148 QAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788777653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.55 E-value=1.8e-13 Score=109.48 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=73.4
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
...+.|+|.+|+.+|++++|++.|+++++++|.+..+++++|.++..+|++++|+..|+++++++|++ ..+..++..
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n---~~~~~~l~~ 143 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---LDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999997 666777766
Q ss_pred HHH
Q 017532 336 MYE 338 (370)
Q Consensus 336 lye 338 (370)
+..
T Consensus 144 ~~~ 146 (153)
T d2fbna1 144 CVN 146 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.1e-13 Score=110.03 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD--------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
+..+...|..++..|+|++|+..|++++...+... ..++.++|.+|++.|++++|+.++++++++.
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 45566889999999999999999999998877111 2456789999999999999999999999765
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~ 310 (370)
|.+ ..++..+|.+++.+|++++|+..|+++++++|+++.+...++.+....++..+..
T Consensus 93 p~~-------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 93 SNN-------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp TTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 442 6678999999999999999999999999999999999999999887776666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.9e-13 Score=113.65 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=105.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
++..|..+...|++++|++.|.++. ..+ ..+++++|.+++.+|++++|++.|+++++++|+++.
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i~------------~~~----~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~ 71 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAVQ------------DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 71 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS------------SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcC------------CCC----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh
Confidence 4466999999999999999998753 223 346899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch-------------hHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPTVAL-------------NETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~-------------~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
+++++|.++..+|++++|++.|++++...|.+.. ...+++|++.+|.-..+ .++....+....+.
T Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~--~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhc
Confidence 9999999999999999999999999987665321 23678999999875433 55555555544333
Q ss_pred CC
Q 017532 359 AP 360 (370)
Q Consensus 359 ~~ 360 (370)
.+
T Consensus 150 ~~ 151 (192)
T d1hh8a_ 150 KS 151 (192)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.51 E-value=1e-13 Score=104.76 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
..+.+|.++.+.|++++|+..|++++++.|+. ..++.++|.++...|++++|+..|+++++++|++.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 84 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 84 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccccc-------------chhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence 35778999999999999999999999765442 67789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
.++.++|.++...|++++|++.+++.+
T Consensus 85 ~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 85 AVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.5e-14 Score=106.41 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
++++.++..+++++|...|++++..+| .++.+++++|.++++.+ ++++|+..|+++++. ...|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----------~~~~~~- 71 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----------GSKEEQ- 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----------SCHHHH-
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----------cCCchH-
Confidence 566778888999999999999999999 99999999999998755 455799999998842 123333
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL 303 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~ 303 (370)
..+++++|.+|+..|++++|+++|+++++++|++..+...++.+..+.
T Consensus 72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999988887766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9.4e-13 Score=101.80 Aligned_cols=111 Identities=9% Similarity=0.126 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..+..+|..++..|+|++|+..|+++++.+| .++.++.++|.+|.++|++++|+..|++++++.+... ...+..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-----~~~~~~ 78 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-----EDYRQI 78 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-----TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-----HHHHHH
Confidence 3455899999999999999999999999999 9999999999999999999999999999999887742 233444
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
+.++..+|.++...+++++|+++|++++..+|+ +...
T Consensus 79 -a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 115 (128)
T d1elra_ 79 -AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVL 115 (128)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHH
Confidence 788899999999999999999999999988765 4333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.48 E-value=6e-13 Score=106.30 Aligned_cols=117 Identities=13% Similarity=-0.024 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL----D-----------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
..+...|..+++.|+|.+|+..|++++...+.. + ..+++++|.+|.++|++++|+.+|++++++.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 344568889999999999999999999876611 1 1356789999999999999999999999765
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
|. . ..+++.+|.++..+|++++|+..|+++++++|++..+..+++.+..+++
T Consensus 98 p~------------~-~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 98 KN------------N-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp TT------------C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred ch------------h-hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 44 3 6789999999999999999999999999999999999999988876554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.5e-12 Score=115.21 Aligned_cols=174 Identities=10% Similarity=-0.110 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-G----LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..+...|.+|...|+|++|+..|.+++.... . ....++..+|.+|.++|++++|+++|++++++.+..
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~------- 110 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------- 110 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc-------
Confidence 4456778899999999999999999988643 1 223578899999999999999999999999987764
Q ss_pred chHHHHHHHHHhHHHHHHH-cCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 250 SEVEFRNLVSRNKALIYLV-GKDYVSAVREYEECIERDYN------DIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~-~g~~~eA~~~~~~~l~~~p~------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.++.....++.++|.++.. .|++++|++.|++++++.+. ...++.++|.++..+|++++|++.|++++...|.
T Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 2333336778889988865 69999999999999987432 2467899999999999999999999999999877
Q ss_pred cch----hHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 323 VAL----NETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 323 ~~~----~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
... ....+++++.+|... +........++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~--~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 191 NRLSQWSLKDYFLKKGLCQLAA--TDAVAAARTLQEGQS 227 (290)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHT--TCHHHHHHHHHGGGC
T ss_pred chhhhhhHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHH
Confidence 531 123455666655432 334555555554433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.46 E-value=1.2e-12 Score=106.11 Aligned_cols=133 Identities=8% Similarity=0.055 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL--------------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
+..+...|..+++.|+|.+|+..|++++...+.. ...++.++|.+|..+|++++|+.++++++.+.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 3456688999999999999999999998754411 12446789999999999999999999999775
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD-SIKVLENALE 318 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~-A~~~l~~al~ 318 (370)
|.+ ..+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..+ ..+.+.++.+
T Consensus 95 p~~-------------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 95 SAN-------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cch-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 543 67789999999999999999999999999999999999999999887776654 4555555554
Q ss_pred h
Q 017532 319 R 319 (370)
Q Consensus 319 ~ 319 (370)
.
T Consensus 162 ~ 162 (168)
T d1kt1a1 162 K 162 (168)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.8e-13 Score=104.90 Aligned_cols=110 Identities=13% Similarity=0.038 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK---DYVSAVREYEECIERDYND 289 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g---~~~eA~~~~~~~l~~~p~~ 289 (370)
..++..+...+++++|++.|++++.+.|.+ ..+++++|.+++..+ ++++|+..|++++..+|.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-------------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~ 69 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc
Confidence 356778889999999999999999765553 567899999998744 5567999999999998765
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 290 --IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 290 --~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
..+++++|.++...|++++|+++|+++++++|++ ..+...+..+.+
T Consensus 70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~---~~A~~l~~~I~~ 117 (122)
T d1nzna_ 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC---HHHHHHHHHHHH
Confidence 4589999999999999999999999999999998 666666666654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.44 E-value=4.9e-13 Score=108.64 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGN---------------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~---------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~ 242 (370)
...|..++..|+|++|+..|+++++..+ .....++.++|.++.++|++++|+..|++++++.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--- 107 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--- 107 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh---
Confidence 3566778889999999999999876432 0344567889999999999999999999999653
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~ 310 (370)
|+. ..+++.+|.+++.+|++++|+..|+++++++|++..+...++.+........++.
T Consensus 108 ---------p~~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 108 ---------PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp ---------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hhh-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443 7789999999999999999999999999999999999999999887776666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.2e-12 Score=101.15 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+-.+|..+++.|++++|+.+|++++++.|+. ..++.++|.+++.+|+|++|+..|+++++++|.++
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~ 72 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence 45678999999999999999999999875542 56789999999999999999999999999988765
Q ss_pred -------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 291 -------VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 291 -------~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.++.++|.++...+++++|++.|++++..+|+.
T Consensus 73 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 467788889999999999999999999998864
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.43 E-value=7.7e-13 Score=99.76 Aligned_cols=92 Identities=10% Similarity=-0.112 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+.+|..+.+.|++++|+..|+++++.+| .++.++..+|.++...|++++|+.+|++++++.|+. ..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~ 85 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-------------IA 85 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhccccccccccccc-------------cc
Confidence 5678899999999999999999999999 999999999999999999999999999999775543 67
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
++.++|.++...|++++|++.|++.|
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88999999999999999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.39 E-value=7.3e-13 Score=104.77 Aligned_cols=111 Identities=6% Similarity=-0.002 Sum_probs=93.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV----------GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.+.+.|++|+..|+++++.+| .++.+++.+|.++... +.+++|+..|++++++.|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~----------- 74 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----------- 74 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-----------
Confidence 4456889999999999999999 9999999999999854 55689999999999775543
Q ss_pred HHHHHHHhHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH
Q 017532 254 FRNLVSRNKALIYLVGKD-----------YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~-----------~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
..++.++|.+|..+|+ |++|+++|+++++++|++..++.+++.+....+.+.+
T Consensus 75 --~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 75 --DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred --hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999988764 7999999999999999999999999988644444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9.3e-13 Score=125.60 Aligned_cols=141 Identities=12% Similarity=-0.053 Sum_probs=98.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
.+....+.|+.|+..+++.+..+| .+...+..+|.++...|+.++|+..+++++.+ ++ ..++++
T Consensus 94 ~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------~~---~~~~~~ 157 (497)
T d1ya0a1 94 FLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY------------IC---QHCLVH 157 (497)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH------------HH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC------------CH---HHHHHH
Confidence 344456889999999999999999 88889999999999999999999999999843 33 456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY 341 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~ 341 (370)
+|.++...|++++|+.+|+++++++|++..+++++|+++...|+..+|+.+|.+++..+|.+ ..+..||..+++...
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~---~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF---PAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999988 889999999988544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=8.8e-13 Score=118.91 Aligned_cols=109 Identities=4% Similarity=-0.202 Sum_probs=96.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
+...+.+++|...+.+++...| .....+..+|.++...|++++|+..|.+++ ..+|.. ..++..+|
T Consensus 218 ~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------~~~p~~-~~~~~~l~ 283 (334)
T d1dcea1 218 AFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELE------------PENKWC-LLTIILLM 283 (334)
T ss_dssp HHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHC------------TTCHHH-HHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHH------------hhCchH-HHHHHHHH
Confidence 4455788889999999999999 888888889999999999999999999998 567777 88999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
.++...|++++|+++|+++++++|.+...|.+++..+.-...+
T Consensus 284 ~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~ 326 (334)
T d1dcea1 284 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 326 (334)
T ss_dssp HHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence 9999999999999999999999999999999999888754333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6e-12 Score=91.74 Aligned_cols=88 Identities=16% Similarity=0.045 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+.-.+.+|.++.+.|++++|+.+|++|+++.+... ...++. ..++.++|.++...|++++|+..|+++++++|+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-----~~~~~~-~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-----ISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----CCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-----ccCccH-HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 45678999999999999999999999999887642 122333 678999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 017532 289 DIVAINNKALCLMY 302 (370)
Q Consensus 289 ~~~~~~nla~~~~~ 302 (370)
++.+++|++.....
T Consensus 79 ~~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 79 HQRANGNLKYFEYI 92 (95)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999775543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.34 E-value=4.9e-12 Score=101.17 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=88.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN------ 288 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~------ 288 (370)
.|..++..|++++|+..|++++++.+...........+.. +.++.++|.+|..+|++++|++.+++++.+.|.
T Consensus 15 ~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~-a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 15 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhH-HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 3778889999999999999999998764221111123333 678999999999999999999999999987432
Q ss_pred -----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 -----DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 -----~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...+++++|.++..+|++++|++.|++++++.|+.
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 23578999999999999999999999999997753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.33 E-value=4.2e-12 Score=100.28 Aligned_cols=103 Identities=10% Similarity=-0.038 Sum_probs=87.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc----------CCHHHHHHHHHHHHhhCC
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG----------KDYVSAVREYEECIERDY 287 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~----------g~~~eA~~~~~~~l~~~p 287 (370)
.+.+++.+++|+..|++++++.|++ ..++.++|.++... +++++|+..|+++++++|
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~-------------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P 72 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLD-------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 72 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcc-------------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4567788999999999999765543 67788999998854 556899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 288 NDIVAINNKALCLMYLRD-----------LSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 288 ~~~~~~~nla~~~~~~g~-----------~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+++.+++++|.++...|+ +++|++.|+++++++|++ .....+|...
T Consensus 73 ~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~---~~~~~~L~~~ 129 (145)
T d1zu2a1 73 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN---THYLKSLEMT 129 (145)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH---HHHHHHHHHH
Confidence 999999999999988764 799999999999999997 6666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.28 E-value=3.3e-11 Score=96.17 Aligned_cols=108 Identities=11% Similarity=-0.033 Sum_probs=87.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLD------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
...|..++..|+|++|+..|++++++.+ .. ..++.++|.+|..+|++++|+..+++++++.+....
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~-~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~- 90 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE- 90 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCh-hhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc-
Confidence 3447888899999999999999998876 32 357889999999999999999999999998764211
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
......+.. ..+++++|.++..+|++++|+..|++++++.|.
T Consensus 91 ~~~~~~~~~-~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 91 LNQDEGKLW-ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp TTSTHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccchh-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 000223334 667899999999999999999999999998653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=5.5e-10 Score=99.29 Aligned_cols=157 Identities=10% Similarity=-0.064 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
+....+|.+++..|++++|+.++++++...|..+ ..++..+|.++...|++++|+..|++++++.+.. ..
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~------~~ 86 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------DV 86 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------TC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh------cc
Confidence 4556678899999999999999999999998333 2467889999999999999999999999887663 23
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY--------NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p--------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.+.. ...+.++|.++...|++.+|...+.+++...+ .....+.++|.++...|++++|...+++++...+.
T Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 87 WHYA-LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp HHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 3444 77888999999999999999999999987632 12357788999999999999999999999998775
Q ss_pred cc--hhHHHHHHHHHHHH
Q 017532 323 VA--LNETLVVNLCSMYE 338 (370)
Q Consensus 323 ~~--~~~~~~~nl~~lye 338 (370)
.. .......+++..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~ 183 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQCSL 183 (366)
T ss_dssp SCGGGGHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 42 22344455555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.9e-11 Score=87.99 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=70.8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYND-------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETL 329 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 329 (370)
+-.+++|.+++..|+|++|+.+|++++++.|.+ ..+++|+|.++.+.|++++|++.++++++++|++ ..+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~---~~a 82 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRA 82 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC---HHH
Confidence 345789999999999999999999999886543 5789999999999999999999999999999998 889
Q ss_pred HHHHHHHHH
Q 017532 330 VVNLCSMYE 338 (370)
Q Consensus 330 ~~nl~~lye 338 (370)
..|+..+..
T Consensus 83 ~~Nl~~~~~ 91 (95)
T d1tjca_ 83 NGNLKYFEY 91 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=3.2e-09 Score=94.07 Aligned_cols=173 Identities=10% Similarity=0.027 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
++...+..+...|+++.|..+|++++...|.+...++...+....+.|++++|.+.|++++...+..
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~------------- 167 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------------- 167 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-------------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-------------
Confidence 4456777888999999999999999999983445578888999999999999999999999654432
Q ss_pred HHHHHhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 256 NLVSRNKALIY-LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 256 ~~~~~~~g~~~-~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
...+...|... ...|+.+.|...|++++..+|+++..+...+..+...|+++.|+.+|++++...|.+......+++.-
T Consensus 168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~ 247 (308)
T d2onda1 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34455666654 45689999999999999999999999999999999999999999999999998775422123344444
Q ss_pred HHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 335 SMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.-||... |+.+...++.+.....-|+.
T Consensus 248 ~~fE~~~-G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 248 LAFESNI-GDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHH-SCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHCccc
Confidence 4455433 34455555555444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=9.5e-09 Score=90.91 Aligned_cols=225 Identities=8% Similarity=-0.068 Sum_probs=154.7
Q ss_pred hHHHHHHHHHhhhccccCCchHHHHHHHHHHHH-------------HhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCC
Q 017532 44 WRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLA-------------LMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIY 110 (370)
Q Consensus 44 ~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~a-------------l~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~ 110 (370)
...+...|+++... .|.+...|+.+--+. ....+.+++|...+++......|.
T Consensus 32 ~~Rv~~vyerAl~~----~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~---------- 97 (308)
T d2onda1 32 TKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---------- 97 (308)
T ss_dssp HHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----------
T ss_pred HHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCC----------
Confidence 34566677776543 355445554431111 123345678888887775321111
Q ss_pred CCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCH
Q 017532 111 PNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 111 ~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (370)
+ ..+....+.+....|+.+.+...+..++...+. .....| ...+....+.|++
T Consensus 98 -----~---~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~-----------~~~~~w--------~~~~~~~~~~~~~ 150 (308)
T d2onda1 98 -----N---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----------DPTLVY--------IQYMKFARRAEGI 150 (308)
T ss_dssp -----C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----------CTHHHH--------HHHHHHHHHHHCH
T ss_pred -----C---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-----------ChHHHH--------HHHHHHHHHcCCh
Confidence 0 012222344445667777777666655422110 112233 4566677788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQM-QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
+.|..+|+++++..| .+...+...|.... ..|+.+.|...|++++...+.+ ...|...+......
T Consensus 151 ~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~-------------~~~w~~y~~~~~~~ 216 (308)
T d2onda1 151 KSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------------PEYVLAYIDYLSHL 216 (308)
T ss_dssp HHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh-------------HHHHHHHHHHHHHc
Confidence 999999999999999 88888888887654 4689999999999999765542 45678889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 270 KDYVSAVREYEECIERDYNDI----VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+++.|...|++++...|.++ ..|.....--...|+.+.+.++++++.+..|..
T Consensus 217 g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 999999999999999876543 466666666677899999999999999999875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.05 E-value=2.3e-10 Score=99.27 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=107.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
-.+..|++++|+..|+++++.+| .+..++..+|.+++..|++++|++.|++++++.++ . ...+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------------~-~~~~~~l 70 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------------Y-LPGASQL 70 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------------G-HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------c-HHHHHHH
Confidence 45678999999999999999999 99999999999999999999999999999976544 2 4556677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 263 ALIYLVGKDYVSAVREYEECIE-RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~-~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.++...+..+++...+.+... .+|++...+...+.++...|++++|++.++++.+..|..
T Consensus 71 ~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 8888887777777665554333 356677888889999999999999999999999999975
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=5.2e-10 Score=106.19 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..+.++|..+.+.|++++|+..+.+++..++ ..++..+|.++...|++++|+.+|++|+++.|++
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~------------ 185 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN------------ 185 (497)
T ss_dssp ----------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB------------
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------------
Confidence 4566888999999999999999999988766 4678889999999999999999999999876553
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
+..+.++|.++...|++.+|+.+|.+++..+|+.+.++.|++.++.+..
T Consensus 186 -~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 186 -GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp -SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 6778999999999999999999999999999999999999988776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.94 E-value=5.9e-09 Score=84.68 Aligned_cols=118 Identities=6% Similarity=-0.142 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
+.+...|..+...|++++|+..|.+++.+.+ .+..... ..+++ ....... ..+..
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r-G~~l~~~-------~~~~w-----~~~~r~~------------l~~~~ 66 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWR-GPVLDDL-------RDFQF-----VEPFATA------------LVEDK 66 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-SSTTGGG-------TTSTT-----HHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-ccccccC-------cchHH-----HHHHHHH------------HHHHH
Confidence 4556777888888999999999999999887 4431110 01111 1112221 12333
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
..++.++|.++...|++++|+..++++++.+|.+..+|.+++.++...|++.+|+..|+++..
T Consensus 67 -~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 67 -VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 667888999999999999999999999999999999999999999999999999999999843
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.75 E-value=2.4e-06 Score=72.97 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=143.4
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh----hcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK----LRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~----l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
....+...|++.+|++.++++...+ ++ ...+.+ +..+.. .+.+..|...+........+.
T Consensus 8 lG~~~~~~~d~~~A~~~~~kAa~~g---~~---~A~~~L-g~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~--------- 71 (265)
T d1ouva_ 8 LGAKSYKEKDFTQAKKYFEKACDLK---EN---SGCFNL-GVLYYQGQGVEKNLKKAASFYAKACDLNYSN--------- 71 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CH---HHHHHH-HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC---CH---HHHHHH-HHHHHcCCCcchhHHHHHHhhcccccccccc---------
Confidence 4567788999999999999986554 22 333333 444443 457777777776653222100
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH----
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL---- 185 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---- 185 (370)
....+..+...-....+....|+..+..... ... ......++..+.
T Consensus 72 --------a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~-------~g~---------------~~a~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 72 --------GCHLLGNLYYSGQGVSQNTNKALQYYSKACD-------LKY---------------AEGCASLGGIYHDGKV 121 (265)
T ss_dssp --------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTC---------------HHHHHHHHHHHHHCSS
T ss_pred --------hhhccccccccccccchhhHHHHHHHhhhhh-------hhh---------------hhHHHhhcccccCCCc
Confidence 0011111111111222333444433333211 100 112233444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
.......|...+...... .+...++.+|.++.. ..+...+..+++.+.+. .+ ..+..+
T Consensus 122 ~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------g~----~~A~~~ 183 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----------KD----SPGCFN 183 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------TC----HHHHHH
T ss_pred ccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc-----------cc----cccccc
Confidence 356678888888887664 557888999999986 56778888888888741 12 456778
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCC
Q 017532 262 KALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 262 ~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~ 322 (370)
+|.++.. ..++++|+.+|+++.+. .++.+.+++|.++.. ..++++|+++|+++....+.
T Consensus 184 lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 184 AGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 9999887 77999999999999887 468899999999986 44899999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.71 E-value=1.6e-06 Score=74.05 Aligned_cols=66 Identities=11% Similarity=-0.064 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc--CCchhhHHHHHHHHhhh
Q 017532 288 NDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY--VNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 288 ~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~--~~~~~~~~~ll~~~~~~ 358 (370)
.++.+.+++|.++.. ..++++|+..|+++.+.+. ....++|+.+|.-.. +.+.+++..++++-...
T Consensus 176 g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 176 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred cccccccchhhhcccCcccccchhhhhhhHhhhhcccC-----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 467788899988887 6789999999999998854 568899999997321 22346666666655444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.54 E-value=9.1e-08 Score=82.45 Aligned_cols=129 Identities=9% Similarity=-0.070 Sum_probs=96.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINN 295 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~n 295 (370)
++-.+..|++++|+..|+++++..|+ . ...+..+|.+++..|++++|+..|+++++++|++..++.+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~------------d-~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~ 69 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPK------------D-ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTT------------C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC------------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34567789999999999999975444 2 6778899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 296 KALCLMYLRDLSDSIKVLENALER-VPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 296 la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
++.++...+..+++...+.+.... .|.. ....+..+.++. ..+..++...+++......|+.
T Consensus 70 l~~ll~a~~~~~~a~~~~~~~~~~~~p~~---~~~~l~~a~~~~--~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 70 LRHLVKAAQARKDFAQGAATAKVLGENEE---LTKSLVSFNLSM--VSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEECCCSCHH---HHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhccccHHHHHHhhhhhcccCchH---HHHHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCC
Confidence 999888777777766555443333 2321 233344444443 3455788888888776665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=4.5e-06 Score=61.87 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=59.8
Q ss_pred HHHHHhHHHHHHHc---CCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVG---KDYVSAVREYEECIERDYNDI-VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~---g~~~eA~~~~~~~l~~~p~~~-~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+.++.|.++.+. ++..+|+..|+.++..+|.+. ..++++|+++.++|++++|.++++++++++|++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 34567788888765 455689999999999999775 799999999999999999999999999999997
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.28 E-value=1.1e-05 Score=64.83 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=81.5
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHhCCHH
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND----------------------IVAINNKALCLMYLRDLS 307 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~----------------------~~~~~nla~~~~~~g~~~ 307 (370)
.|... ...+...|..+...|++++|+..|.+++++.+.+ ..++.+++.++...|+++
T Consensus 6 ~D~~~-f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 6 CDLGR-FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp BHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 34443 6778889999999999999999999999986532 256789999999999999
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 308 DSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 308 ~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
+|+..++++++.+|.+ +..+.++..+|... +.........+.+
T Consensus 85 ~Al~~~~~al~~~P~~---e~~~~~l~~al~~~--Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 85 AVIAELEALTFEHPYR---EPLWTQLITAYYLS--DRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHSTTC---HHHHHHHHHHHHTT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcc---HHHHHHHHHHHHHh--cCHHHHHHHHHHH
Confidence 9999999999999998 99999999888743 3355554444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=1.1e-05 Score=61.35 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
.|+++|+.+|+++.+.+. +...+.+|. ....+.++|+++|+++.+. .+ ..+.+.+|.+|.
T Consensus 7 kd~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-----------g~----~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACEL-----------NS----GNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHT-----------TC----HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhcc-----------cc----hhhhhhHHHhhh
Confidence 578999999999988654 445566664 3457899999999999852 22 345677898887
Q ss_pred H----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCC
Q 017532 268 V----GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVP 321 (370)
Q Consensus 268 ~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p 321 (370)
. ..++++|+++|+++.+. .++.+.+++|.+|.. ..++.+|+..|+++.+...
T Consensus 67 ~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 67 NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 6 56799999999999876 568899999999887 5689999999999988765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.01 E-value=8.3e-06 Score=60.41 Aligned_cols=81 Identities=11% Similarity=-0.047 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 207 LDPILVSKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
....+.+..|+++.+.. +.++|+..++++.+. +|..+.+.++++|..|++.|+|++|..++++++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~------------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc------------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678888898888664 557899999998853 222226788999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHH
Q 017532 284 ERDYNDIVAINNKALC 299 (370)
Q Consensus 284 ~~~p~~~~~~~nla~~ 299 (370)
+++|++..+....-.+
T Consensus 101 ~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 101 EHERNNKQVGALKSMV 116 (124)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHH
Confidence 9999999887655443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.48 E-value=0.0011 Score=49.63 Aligned_cols=108 Identities=11% Similarity=-0.080 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 223 g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
.|+++|+.+|+++.+.. + ..+..++|. ....++++|+.+|+++.+. .++.+.+++|.+|..
T Consensus 7 kd~~~A~~~~~kaa~~g-----------~----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~ 67 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN-----------E----MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYEN 67 (133)
T ss_dssp HHHHHHHHHHHHHHHTT-----------C----TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC-----------C----hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhh
Confidence 37899999999998531 1 122333443 4678999999999999875 678999999999886
Q ss_pred ----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc--CCchhhHHHHHHH
Q 017532 303 ----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY--VNHSDIKRTLSSW 354 (370)
Q Consensus 303 ----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~--~~~~~~~~~ll~~ 354 (370)
..++++|++.|+++.+... ....++|+.+|.-.. ..+.++...+.++
T Consensus 68 g~~~~~d~~~A~~~~~~aa~~g~-----~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~ 120 (133)
T d1klxa_ 68 GKYVKKDLRKAAQYYSKACGLND-----QDGCLILGYKQYAGKGVVKNEKQAVKTFEK 120 (133)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHhhhhccCc-----chHHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 5679999999999998754 567899999998532 2234555555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.38 Score=42.96 Aligned_cols=121 Identities=7% Similarity=-0.101 Sum_probs=80.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILV----SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.-...++.+.|...+.......+ .....+ ..++......+..+.|...+..... . ..+... ...
T Consensus 223 ~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~---~-------~~~~~~-~~w 290 (450)
T d1qsaa1 223 ASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---R-------SQSTSL-IER 290 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---T-------CCCHHH-HHH
T ss_pred HHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc---c-------ccchHH-HHH
Confidence 34445788999999888876665 333333 2333333445677788887776653 1 222322 121
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
..+ ..+..+++..+...++.+-......+...+.+|.++...|+.++|...|..+..
T Consensus 291 --~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 291 --RVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp --HHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 233 345678999998888776444445678889999999999999999999998765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.67 E-value=1.1 Score=38.19 Aligned_cols=87 Identities=9% Similarity=0.133 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH----
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF---- 254 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~---- 254 (370)
.+...+...|.+++.+.+++..+...+ .+...+..++.+|.+.+ .++=.+++.+.- . ..++..
T Consensus 104 ~~v~~ye~~~~~e~Li~~Le~~~~~~~-~~~~~~~~L~~lyak~~-~~kl~e~l~~~s----~-------~y~~~k~~~~ 170 (336)
T d1b89a_ 104 ELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKFK-PQKMREHLELFW----S-------RVNIPKVLRA 170 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTT-CCHHHHHHHHHHHHTTC-HHHHHHHHHHHS----T-------TSCHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHcCCc-cchHHHHHHHHHHHHhC-hHHHHHHHHhcc----c-------cCCHHHHHHH
Confidence 344566778999999999999998877 88888888998888754 455555554421 0 111111
Q ss_pred --HHHHHHhHHHHHHHcCCHHHHHHH
Q 017532 255 --RNLVSRNKALIYLVGKDYVSAVRE 278 (370)
Q Consensus 255 --~~~~~~~~g~~~~~~g~~~eA~~~ 278 (370)
....|-....+|.+.|++++|+..
T Consensus 171 c~~~~l~~elv~Ly~~~~~~~~A~~~ 196 (336)
T d1b89a_ 171 AEQAHLWAELVFLYDKYEEYDNAIIT 196 (336)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHhcCCHHHHHHH
Confidence 012233456777788888887654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=1 Score=39.88 Aligned_cols=133 Identities=7% Similarity=-0.070 Sum_probs=92.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HhhcCCc---c
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE-----------MLNEGKF---E 245 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~-----------l~~~~~~---~ 245 (370)
++...+..+++..+...+..+-.... ..+...|.+|+.+...|+.++|...|..+.. ....... .
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~ 369 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID 369 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcC
Confidence 33445567899999988887643333 5677889999999999999999999998542 1111100 0
Q ss_pred --CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 246 --DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 246 --~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
....... +.....+..+..++..|+..+|...+..++.. .+..-...+|......|.++.||....++
T Consensus 370 ~~~~~~~~~-~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 370 KAPQNVDSA-LTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCSCCCCH-HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCccHHHh-hhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0001111 11222345778889999999999999988754 34566667899999999999999888776
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.18 E-value=4.9 Score=33.88 Aligned_cols=102 Identities=9% Similarity=0.026 Sum_probs=63.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
++.++.+.++++.|.....+. .+..+|..+...+.+..+..-|.-. .... ..+|+. .
T Consensus 46 l~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la~i~-~~~~------------~~~~d~----l 102 (336)
T d1b89a_ 46 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC-GLHI------------VVHADE----L 102 (336)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT-TTTT------------TTCHHH----H
T ss_pred HHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHHHHH-HHHh------------hcCHHH----H
Confidence 445667777777777776665 5666777777777776665432111 0000 223332 1
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
...-..+...|.+++.+..++..+..++.+...++-++.++.+.+
T Consensus 103 ~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 103 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 223455667788888888888887777777777777887776653
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.82 E-value=1.1 Score=29.00 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+..+--.+.-+...|+|+|||++++++.
T Consensus 8 AH~~~RrAer~l~~~rydeAIech~kA~ 35 (83)
T d2crba1 8 AHQQSRRADRLLAAGKYEEAISCHRKAT 35 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455557778888888888888877653
|