Citrus Sinensis ID: 017611

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MVRYDDAGGAAATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQL
ccEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccHHHHHHcccccccccHHHHHHcccccccccccEEEEccccccccccHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHHHccHHcccc
cccEcccccHHHcccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccHHHccHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccc
mvryddaggaaattPTQLLESLGSFMRRCLFRVlavgpiphhfafiMDGNRRYAKKlnveegaghkeGFSSLISVLKYCYELGVKYVTIYAFSidnfqrkpAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFknksdeslaVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAiervkgtedingatvctdgvscdYKSEAQALRagrigngvtegfeekqgnnpiinlVDVEKHmymavapdpdilmrssgetrlsNFLLWQtsnclldspaalwpeIGLWHLVWAVLKFQRNHSFLEKKKKQL
mvryddaggaaattptqLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVnanqvsngvingaEKVEKIYSLTVPSIEESCKEKASRVCNGAiervkgtedingatVCTDGVSCDYKSEAQALRAGRIGNGvtegfeekqgnnPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRnhsflekkkkql
MVRYddaggaaattPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNlmdlllekinellkeQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQL
****************QLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQE*************ANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNH**********
**************PTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEE*************IERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIG****************INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEK*****
MVRYDDAGGAAATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIE********RVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQL
MVRYDDAGGAAATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLE******
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MVRYDDAGGAAATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
Q8S2T1295 Dehydrodolichyl diphospha yes no 0.760 0.949 0.509 6e-93
Q8W3U4284 Rubber cis-polyprenyltran N/A no 0.725 0.940 0.461 2e-77
Q8LAR7272 Dehydrodolichyl diphospha no no 0.502 0.680 0.473 3e-43
Q8LED0271 Dehydrodolichyl diphospha no no 0.453 0.616 0.494 4e-41
Q99KU1333 Dehydrodolichyl diphospha yes no 0.404 0.447 0.427 2e-32
Q86SQ9333 Dehydrodolichyl diphospha yes no 0.418 0.462 0.427 2e-32
Q9V157264 Tritrans,polycis-undecapr yes no 0.502 0.700 0.387 6e-28
O14171264 Uncharacterized protein C yes no 0.423 0.590 0.394 2e-27
P35196286 Dehydrodolichyl diphospha yes no 0.383 0.493 0.416 7e-27
Q5JGE1264 Tritrans,polycis-undecapr yes no 0.404 0.564 0.446 5e-26
>sp|Q8S2T1|DDPS6_ARATH Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2 Back     alignment and function desciption
 Score =  341 bits (874), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 180/353 (50%), Positives = 229/353 (64%), Gaps = 73/353 (20%)

Query: 16  TQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISV 75
           +QLLE +  F RR LFRV+++GPIP H AFIMDGNRRYAKK  + +G+GHK GFS+L+S+
Sbjct: 16  SQLLEQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLLDGSGHKAGFSALMSM 75

Query: 76  LKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135
           L+YCYELG+KYVTIYAFSIDNF+RKP EV+++MDL+LEKI  LL+++SIV+ YGIRVYFI
Sbjct: 76  LQYCYELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQYGIRVYFI 135

Query: 136 GNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVN 195
           GNL  L++ VR AAE+VM ATA+NS+VVLL+C+AY               N +DE     
Sbjct: 136 GNLALLNDQVRAAAEKVMKATAKNSRVVLLICIAY---------------NSTDE----- 175

Query: 196 ANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDG 255
                                 V ++++SC  K+  +     +      DI G  +    
Sbjct: 176 ---------------------IVQAVKKSCINKSDNIEASNYKHEDSDSDIEGTDM---- 210

Query: 256 VSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSG 315
                                 E  E+K      I LVD+E++M M+VAP+PDIL+RSSG
Sbjct: 211 ----------------------ENQEKK------IQLVDIEENMQMSVAPNPDILIRSSG 242

Query: 316 ETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQL 368
           ETRLSNFLLWQT N  L SPAALWPEIGL HL+WA+L FQRNHS+LEK+KKQL
Sbjct: 243 ETRLSNFLLWQTGNTQLCSPAALWPEIGLRHLLWAILNFQRNHSYLEKRKKQL 295
Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q8W3U4|HRT2_HEVBR Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8LAR7|DDPS8_ARATH Dehydrodolichyl diphosphate synthase 8 OS=Arabidopsis thaliana GN=At5g60510 PE=2 SV=2 Back     alignment and function description
>sp|Q8LED0|DDPS7_ARATH Dehydrodolichyl diphosphate synthase 7 OS=Arabidopsis thaliana GN=At5g60500 PE=2 SV=1 Back     alignment and function description
>sp|Q99KU1|DHDDS_MOUSE Dehydrodolichyl diphosphate synthase OS=Mus musculus GN=Dhdds PE=2 SV=1 Back     alignment and function description
>sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=1 SV=3 Back     alignment and function description
>sp|Q9V157|UPPS_PYRAB Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|O14171|YE54_SCHPO Uncharacterized protein C4D7.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4D7.04c PE=3 SV=2 Back     alignment and function description
>sp|P35196|RER2_YEAST Dehydrodolichyl diphosphate synthase RER2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER2 PE=1 SV=1 Back     alignment and function description
>sp|Q5JGE1|UPPS_PYRKO Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=uppS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
357517675360 Undecaprenyl pyrophosphate synthetase [M 0.961 0.983 0.549 1e-107
357443329426 Undecaprenyl pyrophosphate synthetase [M 0.961 0.830 0.549 1e-106
255561403381 undecaprenyl diphosphate synthase, putat 0.907 0.876 0.600 1e-104
356561076360 PREDICTED: dehydrodolichyl diphosphate s 0.937 0.958 0.537 1e-104
255582903370 undecaprenyl diphosphate synthase, putat 0.942 0.937 0.547 1e-103
255582899331 undecaprenyl diphosphate synthase, putat 0.891 0.990 0.547 1e-99
356529679308 PREDICTED: dehydrodolichyl diphosphate s 0.809 0.967 0.525 3e-99
255582905363 undecaprenyl diphosphate synthase, putat 0.945 0.958 0.539 3e-98
147774323384 hypothetical protein VITISV_029565 [Viti 0.777 0.744 0.509 2e-97
297832372296 undecaprenyl pyrophosphate synthetase fa 0.763 0.949 0.526 3e-94
>gi|357517675|ref|XP_003629126.1| Undecaprenyl pyrophosphate synthetase [Medicago truncatula] gi|355523148|gb|AET03602.1| Undecaprenyl pyrophosphate synthetase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/362 (54%), Positives = 252/362 (69%), Gaps = 8/362 (2%)

Query: 10  AAATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGF 69
           +A +    LL  L   +RRC+F VL+ GP+P+H AFIMDGNRRYA++ N+ EG GHK GF
Sbjct: 4   SAGSITGHLLGGLYCCLRRCIFAVLSAGPLPNHIAFIMDGNRRYARRRNLGEGDGHKAGF 63

Query: 70  SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYG 129
           S+L+SVL+YCYELG+KYVT+YAFSIDNF+RKP EVQ  M+L+ EKI ELL+++SI+N YG
Sbjct: 64  SALLSVLRYCYELGIKYVTVYAFSIDNFRRKPKEVQTFMELMREKIEELLQQESIINEYG 123

Query: 130 IRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSD 189
           +R++FIGN++ L+EPVR+AAE  M  TA N + VLL+C+AYTS DEIVHAVQES K+K +
Sbjct: 124 VRLHFIGNMQLLTEPVRIAAERAMRVTAHNQERVLLICVAYTSRDEIVHAVQESCKDKWN 183

Query: 190 ESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGA 249
           E     +++VSNG I    +  K   L      + CKE  ++ C+   E  +G  + +  
Sbjct: 184 EIQPSKSDKVSNGEITRINQGPKRNGLNF-HFHDPCKENGTKACSNLHEEGEGAGEKDAL 242

Query: 250 TVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEE---KQGNNPIINLVDVEKHMYMAVAPD 306
                  S D  SE +        NG+ E  EE   KQG    I LVD+EKHMYM VAPD
Sbjct: 243 FEQNIEKSSDNCSEGEITSC----NGIVEITEEQKYKQGEIASIKLVDIEKHMYMTVAPD 298

Query: 307 PDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKK 366
           PDIL+R+SGE RLSNFLLWQTS C L +P  LWPEIGL HLVWAVL FQR+H +LEKKKK
Sbjct: 299 PDILIRTSGEARLSNFLLWQTSACPLYAPKVLWPEIGLRHLVWAVLNFQRHHFYLEKKKK 358

Query: 367 QL 368
           Q 
Sbjct: 359 QF 360

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357443329|ref|XP_003591942.1| Undecaprenyl pyrophosphate synthetase [Medicago truncatula] gi|355480990|gb|AES62193.1| Undecaprenyl pyrophosphate synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255561403|ref|XP_002521712.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] gi|223539103|gb|EEF40699.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356561076|ref|XP_003548811.1| PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|255582903|ref|XP_002532223.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] gi|223528080|gb|EEF30154.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255582899|ref|XP_002532221.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] gi|223528078|gb|EEF30152.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356529679|ref|XP_003533416.1| PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|255582905|ref|XP_002532224.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] gi|223528081|gb|EEF30155.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147774323|emb|CAN61413.1| hypothetical protein VITISV_029565 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297832372|ref|XP_002884068.1| undecaprenyl pyrophosphate synthetase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329908|gb|EFH60327.1| undecaprenyl pyrophosphate synthetase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2053903295 cPT1 "cis-prenyltransferase 1" 0.567 0.708 0.557 1.7e-88
TAIR|locus:2175183272 cPT9 "cis-prenyltransferase 9" 0.505 0.683 0.427 2.6e-61
TAIR|locus:2175168271 cPT8 "cis-prenyltransferase 8" 0.467 0.634 0.439 8.8e-59
UNIPROTKB|E1C3V5333 DHDDS "Uncharacterized protein 0.432 0.477 0.389 8.6e-47
ZFIN|ZDB-GENE-040426-2236335 dhdds "dehydrodolichyl diphosp 0.432 0.474 0.383 3.3e-45
FB|FBgn0029980300 CG10778 [Drosophila melanogast 0.453 0.556 0.369 2.8e-42
UNIPROTKB|D4A6Z6299 Dhdds "Protein Dhdds" [Rattus 0.361 0.444 0.375 8.4e-41
SGD|S000000206286 RER2 "Cis-prenyltransferase in 0.383 0.493 0.389 4e-39
UNIPROTKB|Q5T0A3216 DHDDS "Dehydrodolichyl diphosp 0.220 0.375 0.518 3.5e-38
CGD|CAL0004730328 orf19.4028 [Candida albicans ( 0.421 0.472 0.387 2.4e-37
TAIR|locus:2053903 cPT1 "cis-prenyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 576 (207.8 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
 Identities = 117/210 (55%), Positives = 152/210 (72%)

Query:    16 TQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISV 75
             +QLLE +  F RR LFRV+++GPIP H AFIMDGNRRYAKK  + +G+GHK GFS+L+S+
Sbjct:    16 SQLLEQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLLDGSGHKAGFSALMSM 75

Query:    76 LKYCYELGVKYVTIYAFSIDNFQRKPAEVQNXXXXXXXXXXXXXXXQSIVNLYGIRVYFI 135
             L+YCYELG+KYVTIYAFSIDNF+RKP EV++               +SIV+ YGIRVYFI
Sbjct:    76 LQYCYELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQYGIRVYFI 135

Query:   136 GNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVN 195
             GNL  L++ VR AAE+VM ATA+NS+VVLL+C+AY S DEIV AV++S  NKSD   A N
Sbjct:   136 GNLALLNDQVRAAAEKVMKATAKNSRVVLLICIAYNSTDEIVQAVKKSCINKSDNIEASN 195

Query:   196 -ANQVSNGVINGAEKVEKIYSLTVPSIEES 224
               ++ S+  I G +   +   + +  IEE+
Sbjct:   196 YKHEDSDSDIEGTDMENQEKKIQLVDIEEN 225
GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA
TAIR|locus:2175183 cPT9 "cis-prenyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175168 cPT8 "cis-prenyltransferase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3V5 DHDDS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2236 dhdds "dehydrodolichyl diphosphate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0029980 CG10778 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|D4A6Z6 Dhdds "Protein Dhdds" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
SGD|S000000206 RER2 "Cis-prenyltransferase involved in dolichol synthesis" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T0A3 DHDDS "Dehydrodolichyl diphosphate synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
CGD|CAL0004730 orf19.4028 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8S2T1DDPS6_ARATH2, ., 5, ., 1, ., -0.50990.76080.9491yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.1.310.737
3rd Layer2.5.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
pfam01255222 pfam01255, Prenyltransf, Putative undecaprenyl dip 9e-54
cd00475221 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate S 2e-49
COG0020245 COG0020, UppS, Undecaprenyl pyrophosphate synthase 7e-46
TIGR00055226 TIGR00055, uppS, undecaprenyl diphosphate synthase 1e-36
PRK14830251 PRK14830, PRK14830, undecaprenyl pyrophosphate syn 7e-32
PRK14836253 PRK14836, PRK14836, undecaprenyl pyrophosphate syn 1e-27
PRK14835275 PRK14835, PRK14835, undecaprenyl pyrophosphate syn 3e-27
PRK14831249 PRK14831, PRK14831, undecaprenyl pyrophosphate syn 2e-26
PRK14833233 PRK14833, PRK14833, undecaprenyl pyrophosphate syn 1e-25
PRK14834249 PRK14834, PRK14834, undecaprenyl pyrophosphate syn 3e-25
PRK14832253 PRK14832, PRK14832, undecaprenyl pyrophosphate syn 3e-25
PTZ00349322 PTZ00349, PTZ00349, dehydrodolichyl diphosphate sy 3e-24
PRK14838242 PRK14838, PRK14838, undecaprenyl pyrophosphate syn 4e-24
PRK14829243 PRK14829, PRK14829, undecaprenyl pyrophosphate syn 2e-23
PRK14842241 PRK14842, PRK14842, undecaprenyl pyrophosphate syn 5e-23
PRK14841233 PRK14841, PRK14841, undecaprenyl pyrophosphate syn 6e-23
PRK14840250 PRK14840, PRK14840, undecaprenyl pyrophosphate syn 4e-22
pfam01255222 pfam01255, Prenyltransf, Putative undecaprenyl dip 7e-22
PRK14828256 PRK14828, PRK14828, undecaprenyl pyrophosphate syn 1e-21
PRK14837230 PRK14837, PRK14837, undecaprenyl pyrophosphate syn 1e-19
PRK14839239 PRK14839, PRK14839, undecaprenyl pyrophosphate syn 4e-19
cd00475221 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate S 2e-17
PRK14827296 PRK14827, PRK14827, undecaprenyl pyrophosphate syn 3e-17
TIGR00055226 TIGR00055, uppS, undecaprenyl diphosphate synthase 1e-16
COG0020245 COG0020, UppS, Undecaprenyl pyrophosphate synthase 4e-15
PRK14832253 PRK14832, PRK14832, undecaprenyl pyrophosphate syn 7e-13
PRK14830251 PRK14830, PRK14830, undecaprenyl pyrophosphate syn 1e-11
PRK14831249 PRK14831, PRK14831, undecaprenyl pyrophosphate syn 1e-10
PRK14836253 PRK14836, PRK14836, undecaprenyl pyrophosphate syn 2e-10
PRK10240229 PRK10240, PRK10240, undecaprenyl pyrophosphate syn 4e-10
PRK14842241 PRK14842, PRK14842, undecaprenyl pyrophosphate syn 2e-09
PRK14828256 PRK14828, PRK14828, undecaprenyl pyrophosphate syn 3e-09
PRK14841233 PRK14841, PRK14841, undecaprenyl pyrophosphate syn 4e-09
PRK14835275 PRK14835, PRK14835, undecaprenyl pyrophosphate syn 9e-09
PRK14840250 PRK14840, PRK14840, undecaprenyl pyrophosphate syn 9e-09
PRK14834249 PRK14834, PRK14834, undecaprenyl pyrophosphate syn 1e-08
PRK14829243 PRK14829, PRK14829, undecaprenyl pyrophosphate syn 1e-08
PRK14838242 PRK14838, PRK14838, undecaprenyl pyrophosphate syn 9e-08
PRK14833233 PRK14833, PRK14833, undecaprenyl pyrophosphate syn 1e-06
PRK14839239 PRK14839, PRK14839, undecaprenyl pyrophosphate syn 2e-06
PRK14827296 PRK14827, PRK14827, undecaprenyl pyrophosphate syn 5e-06
PRK14837230 PRK14837, PRK14837, undecaprenyl pyrophosphate syn 1e-05
PRK10240229 PRK10240, PRK10240, undecaprenyl pyrophosphate syn 0.001
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase Back     alignment and domain information 
 Score =  176 bits (449), Expect = 9e-54
 Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 3/150 (2%)

Query: 46  IMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQ 105
           IMDGNRR+AKK  +    GH+ G  ++  +L++C ELG+KY+T+YAFS +N++R   EV 
Sbjct: 1   IMDGNRRWAKKRGLPRTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEVD 60

Query: 106 NLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLL 165
            LM+LL  K+  LL++   ++  G+RV  IG+L  L E +R A E+   AT  N+ + L 
Sbjct: 61  FLMELLERKLRRLLED---LHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLN 117

Query: 166 VCLAYTSADEIVHAVQESFKNKSDESLAVN 195
           + L Y   DEIV AV+   ++ +D  L+  
Sbjct: 118 IALNYGGRDEIVDAVKRLARDVADGKLSPE 147

Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase. Length = 222
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
PRK14837230 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14842241 undecaprenyl pyrophosphate synthase; Provisional 100.0
KOG1602271 consensus Cis-prenyltransferase [Lipid transport a 100.0
PRK14832253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14835275 undecaprenyl pyrophosphate synthase; Provisional 100.0
TIGR00055226 uppS undecaprenyl diphosphate synthase. Alternate 100.0
PRK14833233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14838242 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14840250 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14828256 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14831249 undecaprenyl pyrophosphate synthase; Provisional 100.0
PTZ00349322 dehydrodolichyl diphosphate synthetase; Provisiona 100.0
PRK14841233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14829243 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14836253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14834249 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14830251 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14839239 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14827296 undecaprenyl pyrophosphate synthase; Provisional 100.0
cd00475221 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases ( 100.0
COG0020245 UppS Undecaprenyl pyrophosphate synthase [Lipid me 100.0
PRK10240229 undecaprenyl pyrophosphate synthase; Provisional 100.0
PF01255223 Prenyltransf: Putative undecaprenyl diphosphate sy 100.0
KOG2818263 consensus Predicted undecaprenyl diphosphate synth 99.32
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 86.16
PRK09856275 fructoselysine 3-epimerase; Provisional 85.21
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-90  Score=651.35  Aligned_cols=229  Identities=29%  Similarity=0.513  Sum_probs=217.5

Q ss_pred             cCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHH
Q 017611           35 AVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEK  114 (368)
Q Consensus        35 ~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~  114 (368)
                      ..+++|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++||+||||+|||+||++||++||+|+..+
T Consensus         2 ~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~   81 (230)
T PRK14837          2 NKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADY   81 (230)
T ss_pred             CCCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhh
Q 017611          115 INELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV  194 (368)
Q Consensus       115 l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~  194 (368)
                      |.+...   .++++|||||||||+++||++++++++++|+.|++|++++||||++||||+||++|++++++..       
T Consensus        82 l~~~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~-------  151 (230)
T PRK14837         82 LSSEFN---FYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLSSG-------  151 (230)
T ss_pred             HHHHHH---HHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHhcC-------
Confidence            987554   4789999999999999999999999999999999999999999999999999999999997431       


Q ss_pred             hccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCC
Q 017611          195 NANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGN  274 (368)
Q Consensus       195 ~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~  274 (368)
                               +                                                                      
T Consensus       152 ---------~----------------------------------------------------------------------  152 (230)
T PRK14837        152 ---------L----------------------------------------------------------------------  152 (230)
T ss_pred             ---------C----------------------------------------------------------------------
Confidence                     1                                                                      


Q ss_pred             CCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHH
Q 017611          275 GVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF  354 (368)
Q Consensus       275 ~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~y  354 (368)
                                 .+++|+++.|+++||++++||||||||||||+|||||||||++||||||+|++||||+.+||.+||.+|
T Consensus       153 -----------~~~~i~e~~~~~~L~~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~~dl~~ai~~y  221 (230)
T PRK14837        153 -----------DLETLNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECF  221 (230)
T ss_pred             -----------ChhhCCHHHHHHhhccCCCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCHHHHHHHHHHH
Confidence                       245688889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhh
Q 017611          355 QRNHSFLEK  363 (368)
Q Consensus       355 q~r~rRfGK  363 (368)
                      |+|+||||+
T Consensus       222 ~~R~RrfG~  230 (230)
T PRK14837        222 KNRKRNFGR  230 (230)
T ss_pred             hcccCcCCC
Confidence            999999995

>PRK14842 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>TIGR00055 uppS undecaprenyl diphosphate synthase Back     alignment and domain information
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional Back     alignment and domain information
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2 Back     alignment and domain information
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism] Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information
>PRK09856 fructoselysine 3-epimerase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
1f75_A249 Crystal Structure Of Undecaprenyl Diphosphate Synth 6e-15
1f75_A249 Crystal Structure Of Undecaprenyl Diphosphate Synth 4e-07
4h8e_A256 Structure Of S. Aureus Undecaprenyl Diphosphate Syn 1e-13
4h8e_A256 Structure Of S. Aureus Undecaprenyl Diphosphate Syn 7e-08
2vg2_A284 Rv2361 With Ipp Length = 284 1e-12
2vg2_A284 Rv2361 With Ipp Length = 284 3e-04
2vfw_A227 Rv1086 Native Length = 227 1e-09
2vfw_A227 Rv1086 Native Length = 227 4e-07
2vg1_A228 Rv1086 E,E-Farnesyl Diphosphate Complex Length = 22 1e-09
2vg1_A228 Rv1086 E,E-Farnesyl Diphosphate Complex Length = 22 4e-07
2d2r_A245 Crystal Structure Of Helicobacter Pylori Undecapren 1e-09
2d2r_A245 Crystal Structure Of Helicobacter Pylori Undecapren 2e-05
3ugs_B225 Crystal Structure Of A Probable Undecaprenyl Diphos 3e-08
1ueh_A253 E. Coli Undecaprenyl Pyrophosphate Synthase In Comp 3e-08
1ueh_A253 E. Coli Undecaprenyl Pyrophosphate Synthase In Comp 4e-05
1jp3_A253 Structure Of E.Coli Undecaprenyl Pyrophosphate Synt 2e-07
1jp3_A253 Structure Of E.Coli Undecaprenyl Pyrophosphate Synt 2e-04
1x08_A253 Crystal Structure Of D26a Mutant Upps In Complex Wi 3e-07
1x08_A253 Crystal Structure Of D26a Mutant Upps In Complex Wi 3e-05
>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase From Micrococcus Luteus B-P 26 Length = 249 Back     alignment and structure 
Iteration: 1

 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 39  IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
           IP H A IMDGN R+AK+  +    GH EG  ++  + +Y  +LGVKY+T+YAFS +N+ 
Sbjct: 20  IPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWS 79
Query: 99  RKPAEVQNXXXXXXXXXXXXXXXQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
           R   EV N               + I     ++V  IG +  L +  + A  E    T  
Sbjct: 80  RPKDEV-NYLMKLPGDFLNTFLPELIEK--NVKVETIGFIDDLPDHTKKAVLEAKEKTKH 136
Query: 159 NSKVVLLVCLAYTSADEIVHAVQ 181
           N+ + L+  L Y    EI+ AVQ
Sbjct: 137 NTGLTLVFALNYGGRKEIISAVQ 159
>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase From Micrococcus Luteus B-P 26 Length = 249 Back     alignment and structure
>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase In Complex With Fpp And Sulfate Length = 256 Back     alignment and structure
>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase In Complex With Fpp And Sulfate Length = 256 Back     alignment and structure
>pdb|2VG2|A Chain A, Rv2361 With Ipp Length = 284 Back     alignment and structure
>pdb|2VG2|A Chain A, Rv2361 With Ipp Length = 284 Back     alignment and structure
>pdb|2VFW|A Chain A, Rv1086 Native Length = 227 Back     alignment and structure
>pdb|2VFW|A Chain A, Rv1086 Native Length = 227 Back     alignment and structure
>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex Length = 228 Back     alignment and structure
>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex Length = 228 Back     alignment and structure
>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl Pyrophosphate Synthase Length = 245 Back     alignment and structure
>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl Pyrophosphate Synthase Length = 245 Back     alignment and structure
>pdb|3UGS|B Chain B, Crystal Structure Of A Probable Undecaprenyl Diphosphate Synthase (Upps) From Campylobacter Jejuni Length = 225 Back     alignment and structure
>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With Triton X- 100, Magnesium And Sulfate Length = 253 Back     alignment and structure
>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With Triton X- 100, Magnesium And Sulfate Length = 253 Back     alignment and structure
>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase Length = 253 Back     alignment and structure
>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase Length = 253 Back     alignment and structure
>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg, Ipp And Fspp Length = 253 Back     alignment and structure
>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg, Ipp And Fspp Length = 253 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 2e-45
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 5e-14
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 4e-41
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 4e-14
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 7e-40
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 8e-13
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 1e-39
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 3e-14
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 3e-39
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 1e-14
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 7e-39
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 2e-14
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Length = 227 Back     alignment and structure
 Score =  154 bits (392), Expect = 2e-45
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 6/145 (4%)

Query: 39  IPHHFAFIMDGNRRYAKKLNVEEGA-GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97
           +P H A + DGNRR+A+    ++ + G++ G + +  +L++C+E G++  T+Y  S +N 
Sbjct: 2   LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL 61

Query: 98  QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATA 157
           QR P E+  L++++ + + E+             V  +G+L  + E         + +T 
Sbjct: 62  QRDPDELAALIEIITDVVEEICAP-----ANHWSVRTVGDLGLIGEEPARRLRGAVESTP 116

Query: 158 RNSKVVLLVCLAYTSADEIVHAVQE 182
             +   + V + Y    EIV AV+ 
Sbjct: 117 EVASFHVNVAVGYGGRREIVDAVRA 141
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Length = 227 Back     alignment and structure
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Length = 249 Back     alignment and structure
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Length = 249 Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} Length = 225 Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} Length = 225 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Length = 253 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Length = 253 Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284 Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284 Back     alignment and structure
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245 Back     alignment and structure
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
4h8e_A256 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
3sgv_B253 Undecaprenyl pyrophosphate synthase; alpha/beta, t 100.0
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 100.0
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 100.0
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 100.0
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 100.0
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 100.0
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=1.9e-92  Score=671.41  Aligned_cols=238  Identities=31%  Similarity=0.510  Sum_probs=224.1

Q ss_pred             hhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHH
Q 017611           33 VLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLL  112 (368)
Q Consensus        33 ~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~  112 (368)
                      .+..+++|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++|||||||||||+||++||++||+|+.
T Consensus        18 ~~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~   97 (256)
T 4h8e_A           18 ELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPV   97 (256)
T ss_dssp             -CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHH
Confidence            47779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhh
Q 017611          113 EKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESL  192 (368)
Q Consensus       113 ~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~  192 (368)
                      .+|.+.++   .++++|||||+|||++.||+++++.+.++++.|++|++++||||++||||+||++|++++++++.    
T Consensus        98 ~~l~~~~~---~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~----  170 (256)
T 4h8e_A           98 NFLKTFLP---ELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELH----  170 (256)
T ss_dssp             HHHHHHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHH---HHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH----
Confidence            99998764   47899999999999999999999999999999999999999999999999999999999988742    


Q ss_pred             hhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhccc
Q 017611          193 AVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRI  272 (368)
Q Consensus       193 ~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~  272 (368)
                              +|.+                                                                    
T Consensus       171 --------~g~l--------------------------------------------------------------------  174 (256)
T 4h8e_A          171 --------QQGL--------------------------------------------------------------------  174 (256)
T ss_dssp             --------HTTC--------------------------------------------------------------------
T ss_pred             --------cCCC--------------------------------------------------------------------
Confidence                    2332                                                                    


Q ss_pred             CCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611          273 GNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL  352 (368)
Q Consensus       273 ~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~  352 (368)
                                   +|++|+++.|++||||++.||||||||||||+|||||||||++||||||+|++||||+.+||++||.
T Consensus       175 -------------~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~Ai~  241 (256)
T 4h8e_A          175 -------------NSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIK  241 (256)
T ss_dssp             -------------CGGGCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHH
T ss_pred             -------------ChhhCCHHHHHHhCCCCCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccCCHHHHHHHHH
Confidence                         3567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhc
Q 017611          353 KFQRNHSFLEKKKK  366 (368)
Q Consensus       353 ~yq~r~rRfGK~~~  366 (368)
                      +||+|+||||+.++
T Consensus       242 ~yq~R~RRfG~~~~  255 (256)
T 4h8e_A          242 IYQSRQRRFGGLSE  255 (256)
T ss_dssp             HHHHCCCCTTCC--
T ss_pred             HHHhhhhccCCCCC
Confidence            99999999998764
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ... Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0 Back     alignment and structure
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Back     alignment and structure
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Back     alignment and structure
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 368
d1ueha_228 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 4e-31
d1ueha_228 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 6e-17
d1f75a_229 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 5e-28
d1f75a_229 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 1e-20
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

 Score =  116 bits (290), Expect = 4e-31
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 39  IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
              H A IMDGN R+AKK       GHK G  S+   + +    G++ +T+YAFS +N+ 
Sbjct: 5   GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWN 64

Query: 99  RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
           R   EV  LM+     +  L  E   ++ + +R+  IG+    +  ++    +    TA 
Sbjct: 65  RPAQEVSALME---LFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAG 121

Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSN 201
           N+ + L +   Y    +IV  V++  +     +L  +      
Sbjct: 122 NTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEM 164
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229 Back     information, alignment and structure
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d1ueha_228 Undecaprenyl diphosphate synthase {Escherichia col 100.0
d1f75a_229 Undecaprenyl diphosphate synthase {Micrococcus lut 100.0
d1i60a_278 Hypothetical protein IolI {Bacillus subtilis [TaxI 86.18
d1hl2a_295 N-acetylneuraminate lyase {Escherichia coli [TaxId 81.64
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-86  Score=618.88  Aligned_cols=226  Identities=28%  Similarity=0.429  Sum_probs=199.4

Q ss_pred             CCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Q 017611           37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKIN  116 (368)
Q Consensus        37 ~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~  116 (368)
                      .+.|+|||||||||||||+++|++..+||+.|+++|.++++||.++||++|||||||+|||+||++||++||.|+..+|.
T Consensus         3 ~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l~   82 (228)
T d1ueha_           3 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD   82 (228)
T ss_dssp             TTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHHH
T ss_pred             CCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhc
Q 017611          117 ELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNA  196 (368)
Q Consensus       117 ~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~  196 (368)
                      +...   .++++||||+|||+++.||+++++++.++|+.|++|++++||||++||||+||++|++++++++         
T Consensus        83 ~~~~---~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~---------  150 (228)
T d1ueha_          83 SEVK---SLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV---------  150 (228)
T ss_dssp             HTHH---HHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHH---------
T ss_pred             HhHH---HHHhccEEEEEECCcchhhhhhhhhhhhHHHhccCCCCceEEEEeccccchHHHHHHHHHHHHH---------
Confidence            7543   5889999999999999999999999999999999999999999999999999999999998874         


Q ss_pred             cccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCC
Q 017611          197 NQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGV  276 (368)
Q Consensus       197 ~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  276 (368)
                         .+|.+                                                                        
T Consensus       151 ---~~~~~------------------------------------------------------------------------  155 (228)
T d1ueha_         151 ---QQGNL------------------------------------------------------------------------  155 (228)
T ss_dssp             ---HTTSC------------------------------------------------------------------------
T ss_pred             ---HhCCC------------------------------------------------------------------------
Confidence               22322                                                                        


Q ss_pred             CCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHH
Q 017611          277 TEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR  356 (368)
Q Consensus       277 i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~  356 (368)
                               .+++|+++.|+++||+++.||||||||||||+|||||||||++||||||+|++||||+.+||.+||.+||+
T Consensus       156 ---------~~~~i~~~~~~~~l~~~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEl~F~d~lWPdf~~~dl~~al~~y~~  226 (228)
T d1ueha_         156 ---------QPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN  226 (228)
T ss_dssp             ---------CGGGCCHHHHHTTSTTTTSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHT
T ss_pred             ---------CHhHhhhhheecccccCCCCCCcEEEecCCceeccccchhcccceeEEECCCCCCcCCHHHHHHHHHHHHc
Confidence                     35678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh
Q 017611          357 NH  358 (368)
Q Consensus       357 r~  358 (368)
                      |+
T Consensus       227 R~  228 (228)
T d1ueha_         227 RE  228 (228)
T ss_dssp             CC
T ss_pred             cC
Confidence            85
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Back     information, alignment and structure
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure