Citrus Sinensis ID: 017686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQPLQLFVSCTGHPVNSS
Secondary Structure (PSIPRED)
ccccHHHHccccccHHHHHHHHcccccccHHHccccHHHHHHHHccccccEEEEEHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHcccccccccccccccccccccHccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHccccccccccccccccccccccccccccHHHHHccccccHHHHcccccccccc
Coil and Loop (DISEMBL)
mfysqtflarkgplgtVWCAAHLQHRLkkshytstnipstvdrimcpdvpIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTvsvnlpedathapahtvtlpqkfnldsvdlddhtfddeydnhsrsqeditltdqipvgrdVYVAitfdedimmdsthppedvpdsgvrqmqdilrappsdadvgiqdpgpsnqtevlnvtediqdpgashqgelptdseglqepgpsnqtevlgetvelqepgpsnqTEVLRETvnfqepdlsnqtevlhrstdhtsppkfpevevmrdthhdfsagdlspLFLDVAkditepivsshqfsnekeiqtPALEDLLasrgqplqlfvsctghpvnss
Flexible Loop (DISEMBL)
mfysqtflarkgplgTVWCAAHLQHRLKKshytstnipstvdRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDHTFDDeydnhsrsqeditltdqipvgrDVYVAITFDEDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNfqepdlsnqtevlhrstdhtsppkFPEVEVMRDTHHDFSAGDLSPLFLDVAKDITEPivsshqfsnekEIQTPALEDLLASRGQPLQLFVsctghpvnss
Low Complexity Region (SEG)
MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQPLQLFVSCTGHPVNSS
Disordered region (IsUnstruct)
****QTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDL******************ITLTDQIPVGRDVYVAITFDEDI*************************************************************************************************************************************************GDLSPLFLDVAKDITEPIV**************************LQLFVSC********
Disordered Region (DISOPRED)
MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTV*************HTVTLPQKFNLDSVDLDDHTFDDEYD**************************FDE***************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQD***********************QTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQ***********SPPKFPEVEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQPLQLFVSCTGHPVNSS
Disordered Region (DISPRO)
MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQM*D*****************************************************************************************************************************DLS***************************TPALEDLLASRGQPLQLFVSC********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQPLQLFVSCTGHPVNSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9FQ19	693	Sister chromatid cohesion	yes	no	0.831	0.440	0.456	8e-70
O93310	629	Double-strand-break repai	N/A	no	0.397	0.232	0.409	6e-29
Q9H4I0	556	Double-strand-break repai	yes	no	0.449	0.296	0.333	2e-28
D2HSB3	554	Double-strand-break repai	yes	no	0.446	0.296	0.336	2e-28
Q61550	635	Double-strand-break repai	yes	no	0.397	0.229	0.402	9e-28
Q3SWX9	630	Double-strand-break repai	yes	no	0.397	0.231	0.402	9e-28
O60216	631	Double-strand-break repai	no	no	0.397	0.231	0.402	1e-27
Q9FQ20	810	Sister chromatid cohesion	no	no	0.438	0.198	0.410	2e-27
A2AU37	552	Double-strand-break repai	no	no	0.444	0.295	0.347	2e-27
P30776	628	Cohesin subunit rad21 OS=	yes	no	0.370	0.216	0.374	2e-21

>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2

 Score =  264 bits (675), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 162/355 (45%), Positives = 195/355 (54%), Gaps = 50/355 (14%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS T LARKGPLGTVWCAAH+  RLKKS YTS NIP TVD IM P+VP+ALR S HLL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           +GVVRIYSKKVDYLY+D N+    + K F +  VNLPEDA  AP  +VTLPQ  NLD  D
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query: 121 LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ 180
           L+D T D E+DNH+RS+EDITLTDQIP G D YVA+TFDEDI+ +S              
Sbjct: 121 LEDDTLDMEFDNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI------------- 167

Query: 181 MQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQ 240
                   P D D   +                   P + H GE+  D E   E GP N+
Sbjct: 168 --------PMDVDQSTE-------------------PVSRHTGEI--DVETAHETGPDNE 198

Query: 241 TEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVL---HRSTDHTSPPKFPEVEV 297
                   +     P N TE   E    Q+P  SN TE         D TSP   PE+E 
Sbjct: 199 PRDSNIAFDTGTYSPRNVTE---EFTEVQDPRQSNLTEERIPNSERNDATSPGTVPEIER 255

Query: 298 MRDTHHDFSAGDLSPLFLDVAKDI-TEPIVSSHQFSNEKEIQTPALEDLLASRGQ 351
           MRD  HD S     P F    +D+  E   S  +  NEKE   P++++ + + G+
Sbjct: 256 MRDAAHDLSPTS-HPSFAAQQQDVRVERTESLDETLNEKEPTIPSIDEEMLNSGR 309

May be involved in sister chromatid cohesion during mitosis.
Arabidopsis thaliana (taxid: 3702)

>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 3/149 (2%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+CP V +ALR SGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
           LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F + D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
             DLDD     ++  +    E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/espl1 and dissociates from chromatin, allowing sister chromatids to segregate.

Xenopus laevis (taxid: 8355)

>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 107/186 (57%), Gaps = 21/186 (11%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFY+   ++++GPL  +W AAH + +L K+H    N+  T+++I+ P V IALR SGHLL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
           LGVVRIY++K  YL  DC+   + ++ TF    V+LP++   A  + +TLP++F      
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ 120

Query: 115 NLDSVDLDDH-----------TFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIM 163
           N++++D+ +H           T  + +DN    Q +    +   + R  +    FD++I+
Sbjct: 121 NMNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFGEESEILRRHSF----FDDNIL 176

Query: 164 MDSTHP 169
           ++S+ P
Sbjct: 177 LNSSGP 182

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Homo sapiens (taxid: 9606)

>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 23/187 (12%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFY+   ++++GPL  +W AAH + +L K+H    N+  T+++I+   V IALR SGHLL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
           LGVVRIY++K  YL  DCN  L+ ++ TF    V+LP++   A  + +TLP++F      
Sbjct: 61  LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDTQ 120

Query: 115 NLDSVDLDDHTFDDEYDNHSRSQEDITLTDQI---------PVGRDVYVAIT---FDEDI 162
           N++++D+ +H     +  +    E+ITL +             G +  +      FD++I
Sbjct: 121 NVNAIDVSEH-----FTQNQSKPEEITLREDYSNDLLFQAGSFGEETEILRRHSFFDDNI 175

Query: 163 MMDSTHP 169
           +++S+ P
Sbjct: 176 LLNSSGP 182

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Ailuropoda melanoleuca (taxid: 9646)

>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
           LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F + D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
             DLDD     ++  +    E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.

Mus musculus (taxid: 10090)

>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
           LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F + D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
             DLDD     ++  +    E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.

Bos taurus (taxid: 9913)

>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+ P V +ALR SGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF-NLDS- 118
           LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F + D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 119 -VDLDDHTFDDEYDNHSRSQEDITLTDQI 146
             DLDD     ++  +    E+IT+ +++
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEV 149

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Also plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway.

Homo sapiens (taxid: 9606)

>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 102/173 (58%), Gaps = 12/173 (6%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDV-PIALRMSGHL 59
           MFYS   ++RKGPLG +W AA+   +LKKS   +T+IPS+VD+I+  ++  +  R+  +L
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 60  LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPA----HTVTLPQKFN 115
           LLGVVRIYSKKVD+L+ DCN  LI + K F     N  +     PA     ++ LP++F 
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGV-KEFVAKERNREKTGVSLPASIECFSIALPERFE 119

Query: 116 LDSVDLDDHTFDDEYDNHSRSQEDITLTD--QIPVGRDVYVAITFD--EDIMM 164
           LD+ DL     +D +  + +  EDITL D  Q     D+Y    FD  ED++ 
Sbjct: 120 LDAFDLG--VLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLF 170

May be involved in sister chromatid cohesion during mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 105/184 (57%), Gaps = 21/184 (11%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFY+   ++++GPL  +W AAH + +L K+H    N+  T+ +I+ P V IALR SGHLL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
           LGVVRIY++K  YL  DC+   + ++ TF    V+LP++   A  +T+TLP++F      
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFEIY 120

Query: 115 NLDSVDL-----------DDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIM 163
           N++ +D+           ++ T  +EY N    Q   +  D+  + R       FD++I+
Sbjct: 121 NINEIDISEPLAQNQSRPEEITLREEYSNDLLFQAG-SFGDEPEILRRHSF---FDDNIL 176

Query: 164 MDST 167
           M+S+
Sbjct: 177 MNSS 180

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Mus musculus (taxid: 10090)

>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 11/147 (7%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPD-VPIALRMSGHL 59
           MFYS+  L++KGPL  VW AAH + +L K     T+I  +V  I+  +  P+ALR+SG L
Sbjct: 1   MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60

Query: 60  LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATH----------APAHTVT 109
           +LGVVRIYS+K  YL  DC   L+ L+ +F    V++ E AT             +  +T
Sbjct: 61  MLGVVRIYSRKARYLLEDCTEALMRLKMSFQPGQVDMIEPATALQSLKGKDAVTQSANLT 120

Query: 110 LPQKFNLDSVDLDDHTFDDEYDNHSRS 136
           LP+      + + D TFD ++    R+
Sbjct: 121 LPETITEFDLLVPDSTFDFQWSQLLRT 147

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by cut1 and dissociates from chromatin, allowing sister chromatids to segregate. Also involved in the DNA double-strand-break (DSB) repair system.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
255544264	774	cohesin subunit rad21, putative [Ricinus	0.885	0.419	0.557	3e-96
359487344	761	PREDICTED: sister chromatid cohesion 1 p	0.893	0.431	0.527	4e-87
224058927	818	predicted protein [Populus trichocarpa]	0.888	0.398	0.504	2e-82
297736205	709	unnamed protein product [Vitis vinifera]	0.850	0.440	0.495	2e-76
15231707	693	Sister chromatid cohesion 1 protein 3 [A	0.831	0.440	0.456	5e-68
12006362	692	cohesion family protein SYN3 [Arabidopsi	0.831	0.440	0.456	8e-68
297817254	696	hypothetical protein ARALYDRAFT_486422 [	0.831	0.438	0.453	8e-68
357455555	737	Sister chromatid cohesion 1 protein [Med	0.558	0.278	0.508	3e-51
449464894	908	PREDICTED: sister chromatid cohesion 1 p	0.645	0.261	0.469	2e-50
357140066	677	PREDICTED: sister chromatid cohesion 1 p	0.422	0.228	0.524	2e-41

>gi|255544264|ref|XP_002513194.1| cohesin subunit rad21, putative [Ricinus communis] gi|223547692|gb|EEF49185.1| cohesin subunit rad21, putative [Ricinus communis]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/357 (55%), Positives = 247/357 (69%), Gaps = 32/357 (8%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTST+I STVDRIM P+VPIALRMSGHLL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTDISSTVDRIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           LGVVRIYSKKVD+LYHDCNV L+ LRK F+++ VNLPE+AT A   +VTLP  F+LD++D
Sbjct: 61  LGVVRIYSKKVDFLYHDCNVVLVGLRKAFTSIEVNLPENATTAKFESVTLPPTFDLDALD 120

Query: 121 LDDHTFD-DEY---DNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
           +D   FD D Y   DNH RSQE+ITL DQIP  RD YV I+FDED+MMD T PPE+  ++
Sbjct: 121 VD---FDIDAYGSPDNHMRSQEEITLQDQIPTDRDPYVVISFDEDVMMD-TLPPEEELNA 176

Query: 177 GVRQMQDILRAPPSDADVGIQDPG--PSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQE 234
           G+R  +DI+  PPS  D  +  P   PS++ EV + T D+QD G ++  E+  D   LQE
Sbjct: 177 GIRPTEDIV--PPSGVDTDMASPHTIPSSRIEVTSETVDLQDSGPTNLTEVLMDFADLQE 234

Query: 235 PGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPE 294
             PSN+TE+  +T++ QEPGPSNQTEVL   +N                 +   P   PE
Sbjct: 235 TCPSNKTELQTQTLDFQEPGPSNQTEVLNSAIN-----------------NDNFP---PE 274

Query: 295 VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQ 351
           +EV+RD    FS+ +L P+F     D +EP +S  Q  NEK+  +P  ED++ S GQ
Sbjct: 275 IEVLRDHVDVFSSENLPPVFTHQQNDASEPNISLDQGLNEKKTPSPFKEDVIPSGGQ 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487344|ref|XP_002263663.2| PREDICTED: sister chromatid cohesion 1 protein 3-like [Vitis vinifera]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 189/358 (52%), Positives = 236/358 (65%), Gaps = 30/358 (8%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS TFLARKGPLGTVWCAAHLQH+LKKSHYT+T+IPSTV+RIM P+VPIALRMSGHLL
Sbjct: 1   MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           LGVVRIYSKKVDYLY DCN+ LI +RK FS++ VNLPEDA+HAP H++TLP  F LD++D
Sbjct: 61  LGVVRIYSKKVDYLYQDCNIVLIGIRKAFSSIEVNLPEDASHAPFHSITLPDTFELDALD 120

Query: 121 LD-DHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMD-STHPPEDVPDSGV 178
           LD D   +   D H R+QE+ITLTDQIP+GRD Y+AITFDED+M D S H  E++PDSGV
Sbjct: 121 LDADFYVEGALDMHLRAQEEITLTDQIPIGRDPYIAITFDEDVMTDLSNH--EEIPDSGV 178

Query: 179 RQM-QDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGP 237
           R M +D++   P +     QDPG S+     N  E + +    H  +LP + E +++   
Sbjct: 179 RPMDEDVVHPTPVEGRADFQDPGLSDIMGQSN--ERLNEDNLPH--DLP-EIEVMRDAIH 233

Query: 238 SNQTEVL--GETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEV 295
              +E L  G     Q+PGPS+Q E L E  N                 + T P + PE+
Sbjct: 234 DLHSENLPVGGNAGFQDPGPSHQMEQLNEMFN-----------------EETVPQEVPEM 276

Query: 296 EVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQPL 353
           EVMRD  HD  +  L P++ +   D TE   S  Q  NEKEI +P + D+L S  Q L
Sbjct: 277 EVMRDAVHDLQSERL-PVWPEHGNDTTELDRSLDQMLNEKEILSPNMPDILYSGEQSL 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058927|ref|XP_002299652.1| predicted protein [Populus trichocarpa] gi|222846910|gb|EEE84457.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 185/367 (50%), Positives = 219/367 (59%), Gaps = 41/367 (11%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTST+IPSTVDRIM P+VPIALRMS HLL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTDIPSTVDRIMFPEVPIALRMSSHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           LGVVRIY KKVDYL+ DC V L  L K F+T  VNLPE+AT A   ++TLP   NLD  D
Sbjct: 61  LGVVRIYKKKVDYLFQDCTVALAGLNKAFTTTEVNLPENATTATFESITLPPTLNLDGFD 120

Query: 121 LDDHTFDDEY-----DNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPD 175
           + D+   + +     DNH +S E+IT+ DQI      Y+ I  DED +  S   PE  P 
Sbjct: 121 MSDYLDPEGFVVRSPDNHLKSYEEITIPDQI----SPYITIHVDEDNICPSV--PEQDPS 174

Query: 176 SGVRQMQDILRAPPSDADVGIQD--------------PGPSNQTEVLNVTEDIQDPGASH 221
           S  R + DI   PP + D+  QD              PG SNQT+VL    D  DPG S+
Sbjct: 175 SEARPVDDIHPPPPVNGDLPSQDTGQRTQTVVNNETGPGASNQTDVLVDDMDFHDPGQSN 234

Query: 222 QGELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLH 281
           Q E P D+E  ++P PSNQTEVL  T + Q+PGPSNQT V  ET+N              
Sbjct: 235 QPEDPMDTEDFRDPAPSNQTEVLMHTGDFQDPGPSNQTSVPTETLN-------------Q 281

Query: 282 RSTDHTSPPKFPEVEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPA 341
             +   SP   PE+EVMRD   D  +    PL      D  EP  S  +  NEK+  +P 
Sbjct: 282 SLSGENSP---PEIEVMRDAATDLGSESFPPLSPTRKDDAAEPNRSLDEVLNEKDFLSPI 338

Query: 342 LEDLLAS 348
           +ED L S
Sbjct: 339 MEDALPS 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736205|emb|CBI24843.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 221/357 (61%), Gaps = 45/357 (12%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS TFLARKGPLGTVWCAAHLQH+LKKSHYT+T+IPSTV+RIM P+VPIALRMSGHLL
Sbjct: 1   MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           LGVVRIYSKKVDYLY DCN+ LI +RK FS++ VNLPEDA+HAP H++TLP  F LD++D
Sbjct: 61  LGVVRIYSKKVDYLYQDCNIVLIGIRKAFSSIEVNLPEDASHAPFHSITLPDTFELDALD 120

Query: 121 LD-DHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDE-DIMMDSTHPPEDVPDSGV 178
           LD D   +   D H R+QE+ITLTDQIP+GRD Y+AITFDE +I+  S            
Sbjct: 121 LDADFYVEGALDMHLRAQEEITLTDQIPIGRDPYIAITFDEVNILFPSL----------- 169

Query: 179 RQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPS 238
              Q+ L          + DPG S+     N  E + +    H  +LP + E +++    
Sbjct: 170 -LNQNALSL------CCLMDPGLSDIMGQSN--ERLNEDNLPH--DLP-EIEVMRDAIHD 217

Query: 239 NQTEVL--GETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRSTDHTSPPKFPEVE 296
             +E L  G     Q+PGPS+Q E L E  N                 + T P + PE+E
Sbjct: 218 LHSENLPVGGNAGFQDPGPSHQMEQLNEMFN-----------------EETVPQEVPEME 260

Query: 297 VMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQTPALEDLLASRGQPL 353
           VMRD  HD  +  L P++ +   D TE   S  Q  NEKEI +P + D+L S  Q L
Sbjct: 261 VMRDAVHDLQSERL-PVWPEHGNDTTELDRSLDQMLNEKEILSPNMPDILYSGEQSL 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231707|ref|NP_191514.1| Sister chromatid cohesion 1 protein 3 [Arabidopsis thaliana] gi|30913284|sp|Q9FQ19.2|SCC13_ARATH RecName: Full=Sister chromatid cohesion 1 protein 3; AltName: Full=SCC1 homolog 3; Short=AtRAD21-2 gi|18157647|gb|AAL62059.1|AF400128_1 RAD21-2 [Arabidopsis thaliana] gi|6996291|emb|CAB75452.1| putative protein [Arabidopsis thaliana] gi|332646418|gb|AEE79939.1| Sister chromatid cohesion 1 protein 3 [Arabidopsis thaliana]

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 162/355 (45%), Positives = 195/355 (54%), Gaps = 50/355 (14%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS T LARKGPLGTVWCAAH+  RLKKS YTS NIP TVD IM P+VP+ALR S HLL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           +GVVRIYSKKVDYLY+D N+    + K F +  VNLPEDA  AP  +VTLPQ  NLD  D
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query: 121 LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ 180
           L+D T D E+DNH+RS+EDITLTDQIP G D YVA+TFDEDI+ +S              
Sbjct: 121 LEDDTLDMEFDNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI------------- 167

Query: 181 MQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQ 240
                   P D D   +                   P + H GE+  D E   E GP N+
Sbjct: 168 --------PMDVDQSTE-------------------PVSRHTGEI--DVETAHETGPDNE 198

Query: 241 TEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVL---HRSTDHTSPPKFPEVEV 297
                   +     P N TE   E    Q+P  SN TE         D TSP   PE+E 
Sbjct: 199 PRDSNIAFDTGTYSPRNVTE---EFTEVQDPRQSNLTEERIPNSERNDATSPGTVPEIER 255

Query: 298 MRDTHHDFSAGDLSPLFLDVAKDI-TEPIVSSHQFSNEKEIQTPALEDLLASRGQ 351
           MRD  HD S     P F    +D+  E   S  +  NEKE   P++++ + + G+
Sbjct: 256 MRDAAHDLSPTS-HPSFAAQQQDVRVERTESLDETLNEKEPTIPSIDEEMLNSGR 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12006362|gb|AAG44843.1|AF281155_1 cohesion family protein SYN3 [Arabidopsis thaliana]

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 162/355 (45%), Positives = 194/355 (54%), Gaps = 50/355 (14%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS T LARKGPLGTVWCAAH+  RLKKS YTS NIP TVD IM P+VP+ALR S HLL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           +GVVRIYSKKVDYLY+D N+    + K F +  VNLPEDA  AP  +VTLPQ  NLD  D
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query: 121 LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ 180
           L+D T D E+DNH+RS+EDITLTDQIP G D YVA+TFDEDI+ +S              
Sbjct: 121 LEDDTLDMEFDNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI------------- 167

Query: 181 MQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQ 240
                   P D D   +                   P   H GE+  D E   E GP N+
Sbjct: 168 --------PMDVDQSTE-------------------PVRRHTGEI--DVETAHETGPDNE 198

Query: 241 TEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVL---HRSTDHTSPPKFPEVEV 297
                   +     P N TE   E    Q+P  SN TE         D TSP   PE+E 
Sbjct: 199 PRDSNIAFDTGTYSPRNVTE---EFTEVQDPRQSNLTEERIPNSERNDATSPGTVPEIER 255

Query: 298 MRDTHHDFSAGDLSPLFLDVAKDI-TEPIVSSHQFSNEKEIQTPALEDLLASRGQ 351
           MRD  HD S     P F    +D+  E   S  +  NEKE   P++++ + + G+
Sbjct: 256 MRDAAHDLSPTS-HPSFAAQQQDVRVERTESLDETLNEKEPTIPSIDEEMLNSGR 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817254|ref|XP_002876510.1| hypothetical protein ARALYDRAFT_486422 [Arabidopsis lyrata subsp. lyrata] gi|297322348|gb|EFH52769.1| hypothetical protein ARALYDRAFT_486422 [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 161/355 (45%), Positives = 197/355 (55%), Gaps = 50/355 (14%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS T LARKGPLGTVWCAAH+QHRLKKS YT+ NIP TVD IM P+ P+ALR+SGHLL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVQHRLKKSQYTAVNIPDTVDNIMFPEAPLALRLSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
            GVVRIYSKKVDYLY+D N+    + K F +  VNLPEDA  AP  +VTLPQ  NLD  D
Sbjct: 61  FGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSSQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query: 121 LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ 180
           L+D   D E+DNH+RS+EDITLTDQIP G D YVA+TFDEDI+ +S              
Sbjct: 121 LEDDRLDMEFDNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI------------- 167

Query: 181 MQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQ 240
                   P D D   +                   P + H GE  TD E   E G  N+
Sbjct: 168 --------PMDVDQSTE-------------------PVSGHNGE--TDVETAHEAGQDNE 198

Query: 241 TEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRST---DHTSPPKFPEVEV 297
                   +     P N TE   E    Q+P  SN TE ++ +T   D  SP   PE+E 
Sbjct: 199 PRDSNIAFDTGTYSPRNVTEEFPEV---QDPRQSNLTEEINPNTERNDANSPGNVPEIEK 255

Query: 298 MRDTHHDFSAGDLSPLFLDVAKDI-TEPIVSSHQFSNEKEIQTPALEDLLASRGQ 351
            RD  HD S     P F    ++I  E   S  +  NEKE   P++++ + + G+
Sbjct: 256 RRDAGHDLSPTS-HPSFAAEQQNIRVERTESLDETLNEKEPTIPSIDEEMLNSGR 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455555|ref|XP_003598058.1| Sister chromatid cohesion 1 protein [Medicago truncatula] gi|355487106|gb|AES68309.1| Sister chromatid cohesion 1 protein [Medicago truncatula]

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/246 (50%), Positives = 152/246 (61%), Gaps = 41/246 (16%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTV------------------- 41
           MFYSQTFLARKGPL TVW AAHLQHRLKKS Y ST+IPSTV                   
Sbjct: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSQYASTDIPSTVRNFGYKYKCVLLNKIPKEI 60

Query: 42  -------------DR----IMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNVFLIS 84
                        DR    IM P VPIALRMS HLLLGVVRIYSKKVDYL +DCN+    
Sbjct: 61  VVQLVKSPELPFFDRMIEHIMDPGVPIALRMSAHLLLGVVRIYSKKVDYLLNDCNLVRTV 120

Query: 85  LRKTFSTVSVN-LPEDATHAPAHTVTLPQKFNLDSVDLD-DHTFDDEYDNHSRSQEDITL 142
           L K F++VS N LPEDA  AP HT+T+P  F+LD+++L  +  F+   D H RSQ++ITL
Sbjct: 121 LYKVFASVSNNTLPEDARQAPVHTITMPATFDLDALNLGYEIDFNGYEDAHIRSQDEITL 180

Query: 143 TDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQMQD--ILRAPPSDADVGIQDPG 200
            D+ P+  D YVAI FDEDI    ++  + +PDS  R  ++  I ++P S   V +QD G
Sbjct: 181 ADRSPIVVDNYVAIRFDEDIPFSPSN-AQPLPDSEARPNEEEFIPQSPSSTRVVDVQDGG 239

Query: 201 PSNQTE 206
           PS+  E
Sbjct: 240 PSSHIE 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464894|ref|XP_004150164.1| PREDICTED: sister chromatid cohesion 1 protein 3-like [Cucumis sativus]

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 153/243 (62%), Gaps = 6/243 (2%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS T LARK PLGTVWCAAHLQHRL K  Y  T I   VD IM  +VP+ALR S +LL
Sbjct: 201 MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKISVVVDAIMFGEVPLALRTSSYLL 260

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRK--TFSTVSVNLPEDATHAPAHTVTLPQKFNLDS 118
           LGVVRIYSK++DYL HD +V ++ LRK    ++  + LP+    AP +++TLP  F+LD+
Sbjct: 261 LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSVYQAPFYSITLPATFDLDA 320

Query: 119 VDLDDHTFDDEY-DNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSG 177
           ++LD   + D   D H +SQE+ITL DQ  +GRD Y+ I+F+ED+M DSTH P    D  
Sbjct: 321 LELDSDIYHDGVPDTHMKSQEEITLADQTYIGRDAYLDISFEEDVMHDSTH-PGGSSDQF 379

Query: 178 VRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGP 237
           V    D++  PP   D+ +    PS+  ++LN   D  +   S      TD+  +Q+ GP
Sbjct: 380 VSMEDDMI--PPPHVDITMDVEVPSDFEDILNTGHDGDNMPHSFPEVEVTDAMNVQDFGP 437

Query: 238 SNQ 240
           SN+
Sbjct: 438 SNK 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357140066|ref|XP_003571593.1| PREDICTED: sister chromatid cohesion 1 protein 2-like [Brachypodium distachyon]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 113/162 (69%), Gaps = 7/162 (4%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS + LARK PLGTVW AAHL+ ++KK+     NIPS  + IM P+VPIALR+SGHLL
Sbjct: 1   MFYSHSILARKSPLGTVWIAAHLERKVKKTQIDGINIPSYAECIMAPEVPIALRLSGHLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
           LG+VRIYS +V+YL+ DCN  L ++R  F++V V+LP DA  AP   +T+P+ FNLD ++
Sbjct: 61  LGLVRIYSWQVNYLFQDCNRMLSAVRTAFASVEVDLPFDADRAPFELITMPETFNLDHLN 120

Query: 121 LDDHTFDDEY-DNHSRSQEDITLTDQIPVGRDVYVAITFDED 161
           LDD     E  DNH R+ + ITL+++       YV I+ DED
Sbjct: 121 LDDAIRQMETPDNHRRTSDQITLSEE------EYVTISLDED 156

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2097548	693	SYN3 "AT3G59550" [Arabidopsis	0.711	0.376	0.505	2.1e-61
TAIR|locus:2181457	1031	SYN4 "sister chromatid cohesio	0.667	0.237	0.386	4.8e-37
UNIPROTKB|O93310	629	rad21 "Double-strand-break rep	0.395	0.230	0.426	1.3e-28
FB|FBgn0260987	715	vtd "verthandi" [Drosophila me	0.389	0.2	0.425	5.7e-28
TAIR|locus:2164501	810	SYN2 [Arabidopsis thaliana (ta	0.790	0.358	0.32	1e-27
UNIPROTKB|F1PWJ5	555	RAD21L1 "Uncharacterized prote	0.422	0.279	0.389	1.2e-27
RGD|1594529	635	Rad21 "RAD21 homolog (S. pombe	0.901	0.521	0.299	3e-26
UNIPROTKB|E5RFV8	225	RAD21 "Double-strand-break rep	0.395	0.644	0.42	4e-26
UNIPROTKB|E5RIN7	228	RAD21 "Double-strand-break rep	0.395	0.635	0.42	4e-26
UNIPROTKB|D2HSB3	554	RAD21L1 "Double-strand-break r	0.727	0.481	0.288	6.8e-26

TAIR|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 139/275 (50%), Positives = 170/275 (61%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFYS T LARKGPLGTVWCAAH+  RLKKS YTS NIP TVD IM P+VP+ALR S HLL
Sbjct:     1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
             +GVVRIYSKKVDYLY+D N+    + K F +  VNLPEDA  AP  +VTLPQ  NLD  D
Sbjct:    61 VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFD 120

Query:   121 LDDHTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQ 180
             L+D T D E+DNH+RS+EDITLTDQIP G D YVA+TFDEDI+ +S   P DV  S    
Sbjct:   121 LEDDTLDMEFDNHTRSEEDITLTDQIPTGIDPYVAVTFDEDIISESI--PMDVDQS---- 174

Query:   181 MQDILRAPPSDADVGI-QDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSN 239
              + + R    + DV    + GP N+    N+  D    G      +  +   +Q+P  SN
Sbjct:   175 TEPVSRHT-GEIDVETAHETGPDNEPRDSNIAFDT---GTYSPRNVTEEFTEVQDPRQSN 230

Query:   240 QTEVL---GETVELQEPGPSNQTEVLRETVNFQEP 271
              TE      E  +   PG   + E +R+  +   P
Sbjct:   231 LTEERIPNSERNDATSPGTVPEIERMRDAAHDLSP 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0000798 "nuclear cohesin complex" evidence=ISS

GO:0007067 "mitosis" evidence=IEP

GO:0005730 "nucleolus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009561 "megagametogenesis" evidence=IMP

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

TAIR|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 4.8e-37, P = 4.8e-37
 Identities = 100/259 (38%), Positives = 148/259 (57%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFYSQ  LA+KGPLGT+W AAHL+ +L+K+    T+I  +VD I+ P+ PIALR+S HLL
Sbjct:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
             LGVVRIYS+KV+YL+ DC+  L+ +++ F + +V+LP + + AP H++TLP+ F+LD  +
Sbjct:    61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query:   121 L-DDHTFDDEY-DNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMM---DSTHPPEDVPD 175
             L D+  F   Y D+H  ++E ITL D +  G  VY    F  D      D++    D+ D
Sbjct:   121 LPDNEIFQGNYVDHHVSTKEQITLQDTMD-GV-VYSTSQFGLDERFGDGDTSQAALDL-D 177

Query:   176 SGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEP 235
               V Q +D++    SD D G+  PG  +   +      I+D        +P D    Q  
Sbjct:   178 EAVFQDKDVIG---SD-DEGV--PGIDHNAYLDAAAPGIKDSMEGVSEAMPMDFNEEQVE 231

Query:   236 GPSNQTEVLGETVELQEPG 254
               +   E + +    Q PG
Sbjct:   232 DLAMNNEFIEDAQAPQTPG 250

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=ISS;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

UNIPROTKB|O93310 rad21 "Double-strand-break repair protein rad21 homolog" [Xenopus laevis (taxid:8355)]

 Score = 305 (112.4 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
 Identities = 64/150 (42%), Positives = 93/150 (62%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+CP V +ALR SGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
             LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F+  D  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
               DLDD     ++  N SR +E IT+ +++
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEE-ITMREEV 149

GO:0071168 "protein localization to chromatin" evidence=ISS

FB|FBgn0260987 vtd "verthandi" [Drosophila melanogaster (taxid:7227)]

 Score = 296 (109.3 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
 Identities = 63/148 (42%), Positives = 90/148 (60%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFY    LA+KGPL  +W AAH   ++ K+H   TNI  +V+ I+ P V +ALR SGHLL
Sbjct:     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
             LGVVRIYS+K  YL  DCN   + ++  F    V+LPE    A  + +TLP+ F+  D+ 
Sbjct:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTA 120

Query:   120 --DLDDHTFDDEYD-NHSRSQEDITLTD 144
               +L+D   + ++  N SR+ E IT+ +
Sbjct:   121 LPELNDIDIEAQFSINQSRADE-ITMRE 147

GO:0006289 "nucleotide-excision repair" evidence=NAS

GO:0008278 "cohesin complex" evidence=ISS;IDA;NAS;IPI

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISS;IMP;NAS

GO:0000775 "chromosome, centromeric region" evidence=NAS

GO:0007067 "mitosis" evidence=IMP

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005705 "polytene chromosome interband" evidence=IDA

GO:0016322 "neuron remodeling" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IGI

TAIR|locus:2164501 SYN2 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 104/325 (32%), Positives = 159/325 (48%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVP-IALRMSGHL 59
             MFYS   ++RKGPLG +W AA+   +LKKS   +T+IPS+VD+I+  ++  +  R+  +L
Sbjct:     1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query:    60 LLGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAH----TVTLPQKFN 115
             LLGVVRIYSKKVD+L+ DCN  LI + K F     N  +     PA     ++ LP++F 
Sbjct:    61 LLGVVRIYSKKVDFLFDDCNKALIGV-KEFVAKERNREKTGVSLPASIECFSIALPERFE 119

Query:   116 LDSVDLDDHTFDDEYDNHSRSQEDITLTD--QIPVGRDVYVAITFD--EDIMMD-----S 166
             LD+ DL     +D +  + +  EDITL D  Q     D+Y    FD  ED++       S
Sbjct:   120 LDAFDLG--VLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLFTFHETFS 177

Query:   167 THPPEDVPDSGVRQMQ---DILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQG 223
             T+  E+  +S    M+   + +R    +A V + +  P +  E    + D Q+  AS   
Sbjct:   178 TNHNENKHESFAHDMELDAENVRDTTEEASVRVVEAEPLDSNEP---SRDHQN--ASRHR 232

Query:   224 ELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQEPDLSNQTEVLHRS 283
             E P   + L EP  S    +  E   ++E        +++  V+  E    N    LHR 
Sbjct:   233 EDPESDDILLEPQMSEDIRIAQEEDTVRE----TICTIVQRLVDSHESSGDN----LHRD 284

Query:   284 --TDHTSPPKFPEVEVMRDTHHDFS 306
               T++    K  +     +  HD S
Sbjct:   285 GHTENLESEKTSKKTSCEEMQHDRS 309

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0000798 "nuclear cohesin complex" evidence=ISS

GO:0007067 "mitosis" evidence=IEP;RCA

GO:0006302 "double-strand break repair" evidence=RCA;IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0010212 "response to ionizing radiation" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

UNIPROTKB|F1PWJ5 RAD21L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 298 (110.0 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 65/167 (38%), Positives = 102/167 (61%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFY+   ++++GPL  +W AAH + +L K+H    N+  T+++I+ P V IALR SGHLL
Sbjct:     1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKIISPKVKIALRTSGHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVD 120
             LGVVRIY++K  YL  DC+  L+ ++ TF    V+LP++   A    +TLP++F+    D
Sbjct:    61 LGVVRIYNRKAKYLLADCSEALLKMKMTFRPGLVDLPKENFEAAYSAITLPEEFH----D 116

Query:   121 LDDHTFD----DEYDNHSRSQ-EDITLTDQIPVGRDV-YVAITFDED 161
              D H  +     E   H++S+ E+ITL +    G D+ + A +F E+
Sbjct:   117 FDTHNVNAIDVSEQFTHNQSRPEEITLREHY--GNDLLFQAGSFGEE 161

GO:0000228 "nuclear chromosome" evidence=IEA

RGD|1594529 Rad21 "RAD21 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 3.0e-26, P = 3.0e-26
 Identities = 107/357 (29%), Positives = 170/357 (47%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+ P V +ALR SGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
             LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F+  D  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   120 --DLDDHTFDDEYD-NHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDS 176
               DLDD     ++  N SR +E IT+ ++  VG    ++I  + D   D      ++   
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEE-ITMREE--VGN---ISILQENDFG-DFGMDDREIMRE 173

Query:   177 GVRQMQDILRAPPSDADVGIQ-DPGPSNQTEVLNVTE---DIQDP--GASHQGELPTDSE 230
             G     D +    S +++ ++ +   SN  E +N  E     +D   G  + G +  D  
Sbjct:   174 GSAFEDDDMLVSTSASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKL 233

Query:   231 -GLQEPGPSNQTEVLGET-VELQE-PGPSNQTEVLRETVNFQE-PDLSNQTEVLHRSTDH 286
                 + G  +    L ET V L E P   +  E    ++   + PD  +  E +   TD 
Sbjct:   234 ISNNDGGIFDDPPALSETGVMLPEQPAHDDMDEDDNGSLGGPDSPDSVDPVEPMPTMTDQ 293

Query:   287 TS-PPKFPE---VEVMRDTHHDFSAGDLSPLFLDVAKDITEPIVSSHQFSNEKEIQT 339
             T+  P   E   +E +  T  +  A     L +D  K++    + + Q S+  +I T
Sbjct:   294 TTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRA-QLSDYSDIVT 349

GO:0005634 "nucleus" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008278 "cohesin complex" evidence=ISO

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA;ISO

GO:0071168 "protein localization to chromatin" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E5RFV8 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 63/150 (42%), Positives = 92/150 (61%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+ P V +ALR SGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
             LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F+  D  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
               DLDD     ++  N SR +E IT+ +++
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEE-ITMREEV 149

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

UNIPROTKB|E5RIN7 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 63/150 (42%), Positives = 92/150 (61%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFY+   L+++GPL  +W AAH   +L K+H    N+ S+V+ I+ P V +ALR SGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFN-LDSV 119
             LGVVRIY +K  YL  DCN   I ++  F    V+LPE+   A  + +TLP++F+  D  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   120 --DLDDHTFDDEYD-NHSRSQEDITLTDQI 146
               DLDD     ++  N SR +E IT+ +++
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEE-ITMREEV 149

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

UNIPROTKB|D2HSB3 RAD21L1 "Double-strand-break repair protein rad21-like protein 1" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 299 (110.3 bits), Expect = 6.8e-26, P = 6.8e-26
 Identities = 86/298 (28%), Positives = 152/298 (51%)

Query:     1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
             MFY+   ++++GPL  +W AAH + +L K+H    N+  T+++I+   V IALR SGHLL
Sbjct:     1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60

Query:    61 LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKF------ 114
             LGVVRIY++K  YL  DCN  L+ ++ TF    V+LP++   A  + +TLP++F      
Sbjct:    61 LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDTQ 120

Query:   115 NLDSVDLDDH-TFDDEYDNHSRSQEDIT--LTDQI-PVGRDVYVAIT---FDEDIMMDST 167
             N++++D+ +H T +         +ED +  L  Q    G +  +      FD++I+++S+
Sbjct:   121 NVNAIDVSEHFTQNQSKPEEITLREDYSNDLLFQAGSFGEETEILRRHSFFDDNILLNSS 180

Query:   168 HPPEDVPDSGVRQMQDILRAPPSDADVGIQDPGPSNQTEVLNVTED-----IQDPGASHQ 222
              P  +     +   + +      D++ G  D G + +  + N+ +D     ++D   + +
Sbjct:   181 GPLVEHSSGSIAGEKPLFY----DSEDGFGDEGAAGEM-IDNLLQDDQNILLEDSHLNRE 235

Query:   223 GELPTDSEGLQEPGPSNQTEVLGETVELQEPGPSNQTEVLRETVNFQ-EP-DLSNQTE 278
               LP +        P N      E + L E G  ++T +  E   F  +P D+S+  E
Sbjct:   236 ISLPPEPPDTIVVEPDNP-----EYIRLPENGKMDET-LSNEEEGFTLDPIDVSDIAE 287

GO:0005634 "nucleus" evidence=ISS

GO:0005694 "chromosome" evidence=ISS

GO:0007128 "meiotic prophase I" evidence=ISS

GO:0030893 "meiotic cohesin complex" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I001200 hypothetical protein (818 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
pfam04825	110	pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec	1e-45

>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein

 Score =  151 bits (384), Expect = 1e-45
 Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 1/111 (0%)

Query: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLL 60
           MFYS   L +KGPL TVW AA L+ +L +      +IP + + I+ P+ PIALR+SG LL
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  LGVVRIYSKKVDYLYHDCNVFLISLRKTFSTVSVNLPEDATHAPAHTVTLP 111
            GVVRIYS+KV+YL  DCN  L  L+K F  +   L      A  + +TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAF-RIPGQLDLPERKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
KOG1213	614	consensus Sister chromatid cohesion complex Cohesi	100.0
PF04825	111	Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot	100.0
PF06278	565	DUF1032: Protein of unknown function (DUF1032); In	84.25

>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-43  Score=366.90  Aligned_cols=124  Identities=52%  Similarity=0.912  Sum_probs=120.9

Q ss_pred             CCchhhhhhccCChhHHHHHhhcCCccCchhhccCChHHHHHHHhCCCCceehhhhccccceeEEEEecchhhhHhhHHH
Q 017686            1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNV   80 (367)
Q Consensus         1 MFYS~~LLsKkGpLa~IWLAATl~kKLsKkqIl~vdI~kacd~Il~P~~PlALRLSg~LLlGVVRIYsrKv~YLl~Dcn~   80 (367)
                      |||||.||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||+|||||+||||||||||+||++|||+
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 017686           81 FLISLRKTFSTVSVNLPEDATHAPAHTVTLPQKFNLDSVDLDDH  124 (367)
Q Consensus        81 ~l~kIk~aFr~~~vdLp~~~~~A~~eaITLPd~f~Ld~LdLdd~  124 (367)
                      ++.|||++||++++++|..+..+..++||||++|.++++++.+.
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~~  124 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPDE  124 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhcccccccccc
Confidence            99999999999999999999999999999999999998888753

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families

Probab=100.00  E-value=2.1e-39  Score=272.27  Aligned_cols=111  Identities=48%  Similarity=0.879  Sum_probs=109.4

Q ss_pred             CCchhhhhhccCChhHHHHHhhcCCccCchhhccCChHHHHHHHhCCCCceehhhhccccceeEEEEecchhhhHhhHHH
Q 017686            1 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTNIPSTVDRIMCPDVPIALRMSGHLLLGVVRIYSKKVDYLYHDCNV   80 (367)
Q Consensus         1 MFYS~~LLsKkGpLa~IWLAATl~kKLsKkqIl~vdI~kacd~Il~P~~PlALRLSg~LLlGVVRIYsrKv~YLl~Dcn~   80 (367)
                      ||||++||+|+|+|++||+|||+++||+|++|+++||+++|++|++|+.|+|||+||+||+||||||+|||+||++||+.
T Consensus         1 MFy~~~iL~k~~~l~~vWlaat~~~kl~k~~i~~vdI~~~c~~I~~~~~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~   80 (111)
T PF04825_consen    1 MFYSHDILSKKGPLATVWLAATLGKKLSKKQILQVDIPKICEEIIEPENPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNE   80 (111)
T ss_pred             CCccHHHHhcCCcHHHHHHHHhccCCCCHHHHHhCCHHHHHHHHhCCCcCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCCCCCCccccCC
Q 017686           81 FLISLRKTFSTVSVNLPEDATHAPAHTVTLP  111 (367)
Q Consensus        81 ~l~kIk~aFr~~~vdLp~~~~~A~~eaITLP  111 (367)
                      ++.+|+++|++..+++|+++..|++++||||
T Consensus        81 ~~~~l~~~~~~~~~dl~~~~~~~~~~~it~p  111 (111)
T PF04825_consen   81 LLSKLKRAFRPKKIDLPKDKTKASRNAITLP  111 (111)
T ss_pred             HHHHHHHHhcccccCCCccccCCChhhccCc
Confidence            9999999999888899999999999999998

Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding

>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2

Probab=84.25  E-value=0.72  Score=49.45  Aligned_cols=34  Identities=35%  Similarity=0.391  Sum_probs=29.1

Q ss_pred             ccccceeEEEEecchhhhHhhHHHHHHHHHHhhc
Q 017686           57 GHLLLGVVRIYSKKVDYLYHDCNVFLISLRKTFS   90 (367)
Q Consensus        57 g~LLlGVVRIYsrKv~YLl~Dcn~~l~kIk~aFr   90 (367)
                      +.|+-|.+-||||||+|||+=+-.++.-|..--+
T Consensus         7 alliQgsa~vYskKVeyly~lv~~~l~~l~~~~~   40 (565)
T PF06278_consen    7 ALLIQGSACVYSKKVEYLYSLVYQALDFLSGKKR   40 (565)
T ss_pred             HHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3477899999999999999999999988876544

Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 26/190 (13%), Positives = 50/190 (26%), Gaps = 75/190 (39%)

Query: 124 HTFDDEYDNHSRSQEDITLTDQIPVGRDVYVAITFDEDIMMDSTHPPEDVPDSGVRQMQD 183
           H  D E   H    +DI     + V         F++            V +   + +QD
Sbjct: 5   HHMDFETGEHQYQYKDI-----LSV---------FEDAF----------VDNFDCKDVQD 40

Query: 184 ILRAPPSDADVGIQDPGPSNQTEVLNVTEDIQDPGASHQGELPTDSEGLQEPGPSNQTEV 243
           + ++  S  ++                 + I                 +      + T  
Sbjct: 41  MPKSILSKEEI-----------------DHI-----------------IMSKDAVSGTLR 66

Query: 244 LGETVELQEPGPSNQT-----EVLRETVNF---------QEPDLSNQTEVLHRSTDHTSP 289
           L  T+  +             EVLR    F         ++P +  +  +  R   +   
Sbjct: 67  LFWTLLSK---QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 290 PKFPEVEVMR 299
             F +  V R
Sbjct: 124 QVFAKYNVSR 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00